BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033609
MEGAGSSSVSDNGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLV
GQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES

High Scoring Gene Products

Symbol, full name Information P value
AT2G38450 protein from Arabidopsis thaliana 1.3e-29
AT5G05360 protein from Arabidopsis thaliana 1.2e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033609
        (115 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2057227 - symbol:AT2G38450 species:3702 "Arabi...   328  1.3e-29   1
TAIR|locus:2153559 - symbol:AT5G05360 species:3702 "Arabi...   319  1.2e-28   1


>TAIR|locus:2057227 [details] [associations]
            symbol:AT2G38450 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR011990 EMBL:CP002685
            Gene3D:1.25.40.10 InterPro:IPR006597 Pfam:PF08238 SMART:SM00671
            IPI:IPI00528292 RefSeq:NP_565889.2 UniGene:At.37292
            ProteinModelPortal:F4ISY9 SMR:F4ISY9 PRIDE:F4ISY9
            EnsemblPlants:AT2G38450.1 GeneID:818426 KEGG:ath:AT2G38450
            OMA:KAGNITM Uniprot:F4ISY9
        Length = 138

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 61/82 (74%), Positives = 72/82 (87%)

Query:    24 ETTR--VPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWI 81
             ETTR  VPLS VVSDC KRWF+DTL+EAK G+I MQVL+GQMY+SGYGV +DA+KGR+WI
Sbjct:    49 ETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWI 108

Query:    82 SRASRTRSSVWKVGEKHPGYNA 103
             ++ASR RSSVWKV +K PGYNA
Sbjct:   109 TKASRVRSSVWKVIDKRPGYNA 130


>TAIR|locus:2153559 [details] [associations]
            symbol:AT5G05360 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR011990 EMBL:CP002688
            Gene3D:1.25.40.10 IPI:IPI00541046 RefSeq:NP_196155.2
            UniGene:At.43299 ProteinModelPortal:F4JZA9 SMR:F4JZA9 PRIDE:F4JZA9
            EnsemblPlants:AT5G05360.1 GeneID:830418 KEGG:ath:AT5G05360
            OMA:RTRSSAW Uniprot:F4JZA9
        Length = 163

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 56/87 (64%), Positives = 69/87 (79%)

Query:    27 RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
             RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLVGQMY SGYG+ +D  KGR WI++ASR
Sbjct:    77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKASR 136

Query:    87 TRSSVWKVGEKHPGYNAXXXXXXEMKE 113
             TRSS W+V +K PGYNA      + K+
Sbjct:   137 TRSSAWQVSDKPPGYNASDSDSNDKKD 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115        90   0.00091  102 3  11 22  0.37    30
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  118 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.87u 0.15s 8.02t   Elapsed:  00:00:00
  Total cpu time:  7.87u 0.15s 8.02t   Elapsed:  00:00:00
  Start:  Thu May  9 21:12:38 2013   End:  Thu May  9 21:12:38 2013

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