BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033610
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
          Thermus Thermophilus Hb8
 pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
          Thermus Thermophilus Hb8
          Length = 418

 Score = 28.5 bits (62), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 16 ELIAPTLREMEAKMREAENDP 36
          E + P L E+EA  REA+ DP
Sbjct: 40 ETLIPALEELEAAYREAKKDP 60


>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
           Coli
          Length = 264

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 22  LREMEAKMREAENDPHDGKRKCETLWPIF---KIAHQRSQYIFELYYKRNEISKELYEFC 78
           + ++   + + +NDP D +R   + W +    K+A       F+ Y    ++S +LY+ C
Sbjct: 109 IDQITTVLNQLKNDP-DSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRC 167

Query: 79  LDQGYG 84
            D   G
Sbjct: 168 XDVFLG 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,721,062
Number of Sequences: 62578
Number of extensions: 139673
Number of successful extensions: 311
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 12
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)