Query 033610
Match_columns 115
No_of_seqs 102 out of 149
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01125 G10: G10 protein; In 100.0 2.1E-63 4.5E-68 374.5 9.9 111 1-111 1-112 (145)
2 KOG3404 G10 protein/predicted 100.0 2E-63 4.4E-68 372.1 7.9 109 1-109 1-109 (145)
3 COG5132 BUD31 Cell cycle contr 100.0 2.2E-52 4.8E-57 312.1 7.9 108 1-109 1-109 (146)
4 PF14553 YqbF: YqbF, hypotheti 60.1 6.7 0.00014 24.6 1.6 17 67-83 18-34 (43)
5 COG3433 Aryl carrier domain [S 60.0 4.5 9.7E-05 28.1 0.9 17 87-103 36-52 (74)
6 PRK11798 ClpXP protease specif 55.6 7.7 0.00017 29.6 1.6 15 70-84 11-25 (138)
7 PF12368 DUF3650: Protein of u 46.2 9.3 0.0002 22.1 0.6 16 53-73 4-19 (28)
8 PF14077 WD40_alt: Alternative 43.7 14 0.00031 23.8 1.2 12 68-79 31-42 (48)
9 COG2969 SspB Stringent starvat 42.8 15 0.00033 28.6 1.5 14 70-83 12-25 (155)
10 PF08513 LisH: LisH; InterPro 38.3 20 0.00044 19.6 1.2 18 70-87 3-20 (27)
11 smart00667 LisH Lissencephaly 36.3 25 0.00054 18.3 1.3 21 67-87 3-23 (34)
12 PRK12726 flagellar biosynthesi 36.1 44 0.00095 29.5 3.4 40 48-92 125-164 (407)
13 cd08796 Death_IRAK-M Death dom 35.9 13 0.00027 26.2 0.1 34 11-44 23-56 (89)
14 PF08946 Osmo_CC: Osmosensory 35.6 42 0.00092 21.5 2.4 21 13-33 12-32 (46)
15 KOG3816 Cell differentiation r 35.3 14 0.00029 33.4 0.2 22 88-109 141-165 (526)
16 COG1908 FrhD Coenzyme F420-red 35.2 47 0.001 25.4 3.1 27 13-39 105-131 (132)
17 KOG4587 Predicted membrane pro 34.3 33 0.00072 31.7 2.5 55 54-110 512-586 (605)
18 PF11808 DUF3329: Domain of un 32.8 83 0.0018 21.4 3.8 24 9-32 61-87 (90)
19 PRK06342 transcription elongat 30.2 31 0.00067 26.2 1.4 24 10-33 31-54 (160)
20 cd07624 BAR_SNX7_30 The Bin/Am 29.1 59 0.0013 24.9 2.8 25 9-33 10-34 (200)
21 cd08793 Death_IRAK4 Death doma 28.7 15 0.00032 26.6 -0.5 37 10-46 19-62 (100)
22 PTZ00087 thrombosponding-relat 28.5 31 0.00068 29.7 1.3 19 59-77 314-332 (340)
23 PF04210 MtrG: Tetrahydrometha 27.7 29 0.00064 23.9 0.8 25 9-33 8-32 (70)
24 cd03571 ENTH_epsin ENTH domain 25.1 96 0.0021 22.6 3.2 51 24-82 1-70 (123)
25 PF08727 P3A: Poliovirus 3A pr 23.8 53 0.0011 21.8 1.4 16 70-85 28-43 (57)
26 PF04376 ATE_N: Arginine-tRNA- 23.7 57 0.0012 21.9 1.6 20 68-96 29-48 (80)
27 PRK01026 tetrahydromethanopter 22.6 50 0.0011 23.1 1.2 25 9-33 11-35 (77)
28 KOG2056 Equilibrative nucleosi 22.2 88 0.0019 27.0 2.9 53 22-82 19-90 (336)
29 PF14394 DUF4423: Domain of un 21.5 70 0.0015 24.3 1.9 28 10-37 129-156 (171)
30 TIGR01149 mtrG N5-methyltetrah 21.0 58 0.0013 22.4 1.3 25 9-33 8-32 (70)
31 PRK14134 recX recombination re 20.9 1.9E+02 0.004 23.7 4.4 68 14-83 195-267 (283)
32 PF01417 ENTH: ENTH domain; I 20.8 1.6E+02 0.0035 20.5 3.6 53 23-83 2-74 (125)
33 PF08343 RNR_N: Ribonucleotide 20.0 94 0.002 21.4 2.2 20 73-92 46-65 (82)
No 1
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=100.00 E-value=2.1e-63 Score=374.45 Aligned_cols=111 Identities=57% Similarity=0.957 Sum_probs=107.4
Q ss_pred CCCCCCCC-CCCCCchhhhHHHHHHHHHHHHHhhCCCCCCCCCCccccchhhhhhhhhhHHHHhhhhhhhhhHHHHHHHH
Q 033610 1 MPKVRTNR-TKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYIFELYYKRNEISKELYEFCL 79 (115)
Q Consensus 1 MPkir~~~-k~pPeG~e~IeptL~e~~~kmrea~~e~~~~krk~E~lWpI~rIhhqRSRYIydlyYkrk~ISkeLY~~~l 79 (115)
||+||+++ ++||+|||+|||||+||++|||||+|++|+|||++|++|||||||||||||||||||++++||+||||||+
T Consensus 1 MPkir~~~~k~pP~G~~~Ie~tL~e~~~kmr~ae~~~~~~k~k~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLY~~ll 80 (145)
T PF01125_consen 1 MPKIRTSRKKPPPEGFEKIEPTLEEFEQKMREAENEPHEGKRKNESLWPIFRIHHQRSRYIYDLYYKRKAISKELYDWLL 80 (145)
T ss_pred CCCcccCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCcCCCCCccccceeeecchhhhHHHHHHHHhhhccHHHHHHHH
Confidence 99999764 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHhhccccchhhhhhhhhccccc
Q 033610 80 DQGYGDSNLIAKWKKVHTCSSFMNKLCKGVSY 111 (115)
Q Consensus 80 ~~~yaD~~LIaKWKK~GYE~~~~~~~~~~~~~ 111 (115)
+++|||++|||||||+|||++|+.+|+|.-..
T Consensus 81 ~~~yaD~~LIaKWKk~GYE~LCCl~Ciq~~~~ 112 (145)
T PF01125_consen 81 KEKYADANLIAKWKKPGYEKLCCLRCIQTRDT 112 (145)
T ss_pred HcCCcCHHHHHHhccccHHHHHHHHHhccccc
Confidence 99999999999999999999999999996443
No 2
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription]
Probab=100.00 E-value=2e-63 Score=372.12 Aligned_cols=109 Identities=59% Similarity=1.060 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHHHhhCCCCCCCCCCccccchhhhhhhhhhHHHHhhhhhhhhhHHHHHHHHh
Q 033610 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYIFELYYKRNEISKELYEFCLD 80 (115)
Q Consensus 1 MPkir~~~k~pPeG~e~IeptL~e~~~kmrea~~e~~~~krk~E~lWpI~rIhhqRSRYIydlyYkrk~ISkeLY~~~l~ 80 (115)
||||++++++||+|||+|||||++|+++||+||++||+|+|++|++|||||||||||||||||||||++||+|||+||++
T Consensus 1 mpkv~~~rk~~Pdg~e~IeptL~e~e~kmReae~~~~~~~~~~E~lwpIfqlhHQrsRYiYdlyykR~~IS~eLY~~~l~ 80 (145)
T KOG3404|consen 1 MPKVKRSRKPPPDGWELIEPTLEEFEAKMREAETEPHEGKRKTESLWPIFQLHHQRSRYIYDLYYKRKAISRELYDYCLK 80 (145)
T ss_pred CCccCcCCCCCCcchhhhhhhHHHHHHHHHHhhcCcccCCCcchhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhccccchhhhhhhhhccc
Q 033610 81 QGYGDSNLIAKWKKVHTCSSFMNKLCKGV 109 (115)
Q Consensus 81 ~~yaD~~LIaKWKK~GYE~~~~~~~~~~~ 109 (115)
++|||++|||||||+|||++|+-||+|-.
T Consensus 81 ~~yaD~~LiakWkk~GYE~LCClRCIq~~ 109 (145)
T KOG3404|consen 81 EKYADKNLIAKWKKQGYENLCCLRCIQTR 109 (145)
T ss_pred cccchHHHHHHHhhcCccceeeeeecccc
Confidence 99999999999999999999999999954
No 3
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-52 Score=312.10 Aligned_cols=108 Identities=48% Similarity=0.819 Sum_probs=102.9
Q ss_pred CCCCCCCC-CCCCCchhhhHHHHHHHHHHHHHhhCCCCCCCCCCccccchhhhhhhhhhHHHHhhhhhhhhhHHHHHHHH
Q 033610 1 MPKVRTNR-TKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYIFELYYKRNEISKELYEFCL 79 (115)
Q Consensus 1 MPkir~~~-k~pPeG~e~IeptL~e~~~kmrea~~e~~~~krk~E~lWpI~rIhhqRSRYIydlyYkrk~ISkeLY~~~l 79 (115)
||+|++++ |+||+|||+|+|||++|+.+||+|||.+..+ .+.|.||||||+|||||||||+|||||++||.+||+||+
T Consensus 1 MPRi~t~rskp~PdgFeki~ptL~~fe~~mRqaen~~~~~-sk~E~lwpIfQLHHQRSRYIY~LyyKR~aISt~LY~wL~ 79 (146)
T COG5132 1 MPRIPTNRSKPAPDGFEKIRPTLEKFEAEMRQAENAPLAP-SKPENLWPIFQLHHQRSRYIYNLYYKRGAISTKLYGWLS 79 (146)
T ss_pred CCcCccCCCCCCCcchhhhcchHHHHHHHHHHHhcCCCCC-CChHHhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988 7779999999999999999999999999854 445999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHhhccccchhhhhhhhhccc
Q 033610 80 DQGYGDSNLIAKWKKVHTCSSFMNKLCKGV 109 (115)
Q Consensus 80 ~~~yaD~~LIaKWKK~GYE~~~~~~~~~~~ 109 (115)
+++|||.+|||||+|.|||.+|+-||+|-.
T Consensus 80 k~~yaD~~LiakW~k~GYEkLCCLRCIQ~~ 109 (146)
T COG5132 80 KNRYADHELIAKWDKVGYEKLCCLRCIQPI 109 (146)
T ss_pred HhcccchhHhhhhcccchhhhhhHhhcCcc
Confidence 999999999999999999999999999965
No 4
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=60.14 E-value=6.7 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.667 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHhcCC
Q 033610 67 RNEISKELYEFCLDQGY 83 (115)
Q Consensus 67 rk~ISkeLY~~~l~~~y 83 (115)
...||+++|+||.++++
T Consensus 18 ee~V~kk~y~YL~~ne~ 34 (43)
T PF14553_consen 18 EEKVSKKIYNYLNDNEF 34 (43)
T ss_dssp EEEE-HHHHHHHHHSTT
T ss_pred eeehhHHHHHHHhcCCc
Confidence 35699999999999875
No 5
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.95 E-value=4.5 Score=28.15 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=14.5
Q ss_pred HHHHhhccccchhhhhh
Q 033610 87 NLIAKWKKVHTCSSFMN 103 (115)
Q Consensus 87 ~LIaKWKK~GYE~~~~~ 103 (115)
.|.++||+.|++..|+.
T Consensus 36 ~L~~~wR~~G~~i~F~~ 52 (74)
T COG3433 36 ALLERWRKRGADIDFAQ 52 (74)
T ss_pred HHHHHHHHcCCcccHHH
Confidence 47799999999998864
No 6
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=55.56 E-value=7.7 Score=29.59 Aligned_cols=15 Identities=33% Similarity=0.756 Sum_probs=12.4
Q ss_pred hhHHHHHHHHhcCCC
Q 033610 70 ISKELYEFCLDQGYG 84 (115)
Q Consensus 70 ISkeLY~~~l~~~ya 84 (115)
+=|.|||||+++|+-
T Consensus 11 LlRA~yeW~~Dn~~T 25 (138)
T PRK11798 11 LLRALYEWIVDNGLT 25 (138)
T ss_pred HHHHHHHHHhhCCCC
Confidence 457899999999963
No 7
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=46.15 E-value=9.3 Score=22.09 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=11.1
Q ss_pred hhhhhhHHHHhhhhhhhhhHH
Q 033610 53 AHQRSQYIFELYYKRNEISKE 73 (115)
Q Consensus 53 hhqRSRYIydlyYkrk~ISke 73 (115)
-|.|+||| ++.-||.|
T Consensus 4 ~hprNrYV-----~eh~ls~e 19 (28)
T PF12368_consen 4 VHPRNRYV-----KEHGLSEE 19 (28)
T ss_pred cCcchhhH-----HhcCCCHH
Confidence 38899998 45556665
No 8
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=43.65 E-value=14 Score=23.77 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHH
Q 033610 68 NEISKELYEFCL 79 (115)
Q Consensus 68 k~ISkeLY~~~l 79 (115)
+.|+|+||||+-
T Consensus 31 rKINrdLfdFSt 42 (48)
T PF14077_consen 31 RKINRDLFDFST 42 (48)
T ss_pred HHHhHHHHhhhh
Confidence 349999999974
No 9
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=42.83 E-value=15 Score=28.62 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhcCC
Q 033610 70 ISKELYEFCLDQGY 83 (115)
Q Consensus 70 ISkeLY~~~l~~~y 83 (115)
+=|.+||||+++++
T Consensus 12 LlRA~yeWl~DN~~ 25 (155)
T COG2969 12 LLRALYEWLLDNQL 25 (155)
T ss_pred HHHHHHHHHhcCCC
Confidence 55789999999985
No 10
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=38.30 E-value=20 Score=19.63 Aligned_cols=18 Identities=17% Similarity=0.772 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhcCCCCHH
Q 033610 70 ISKELYEFCLDQGYGDSN 87 (115)
Q Consensus 70 ISkeLY~~~l~~~yaD~~ 87 (115)
|..=+|+||+++||.+..
T Consensus 3 Ln~lI~~YL~~~Gy~~tA 20 (27)
T PF08513_consen 3 LNQLIYDYLVENGYKETA 20 (27)
T ss_dssp HHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHCCcHHHH
Confidence 455589999999987653
No 11
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=36.28 E-value=25 Score=18.33 Aligned_cols=21 Identities=29% Similarity=0.710 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHhcCCCCHH
Q 033610 67 RNEISKELYEFCLDQGYGDSN 87 (115)
Q Consensus 67 rk~ISkeLY~~~l~~~yaD~~ 87 (115)
+..+.+=+.+||+++||.+..
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta 23 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETA 23 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHH
Confidence 345677799999999987654
No 12
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.07 E-value=44 Score=29.53 Aligned_cols=40 Identities=10% Similarity=0.278 Sum_probs=30.2
Q ss_pred chhhhhhhhhhHHHHhhhhhhhhhHHHHHHHHhcCCCCHHHHHhh
Q 033610 48 PIFKIAHQRSQYIFELYYKRNEISKELYEFCLDQGYGDSNLIAKW 92 (115)
Q Consensus 48 pI~rIhhqRSRYIydlyYkrk~ISkeLY~~~l~~~yaD~~LIaKW 92 (115)
.|-++|++-+ -+| +..|+=++|+|++|+++| +|..++..+
T Consensus 125 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~L~~~g-V~~~~~~~l 164 (407)
T PRK12726 125 ELAALNRELA---VKM-REEREQNSDFVKFLKGRG-ISDTYVADF 164 (407)
T ss_pred HHHHHHHHHH---HHh-hhhhcccHHHHHHHHHcC-CCHHHHHHH
Confidence 4667777777 677 677766779999999999 666666555
No 13
>cd08796 Death_IRAK-M Death domain of Interleukin 1 Receptor Associated Kinase-M. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase M (IRAK-M). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors(TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK-M, also called IRAK-3, is an inactive kinase present only in macrophages in an inducible manner. It is a negative regulator of TLR signaling and it contributes to the attenuation of NF-kB activation. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=35.91 E-value=13 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCCchhhhHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 033610 11 YPDGWELIAPTLREMEAKMREAENDPHDGKRKCE 44 (115)
Q Consensus 11 pPeG~e~IeptL~e~~~kmrea~~e~~~~krk~E 44 (115)
+|.+|..+...+.-...++|.+++....|+.+.+
T Consensus 23 ~~~~W~~lA~~i~~~~~~vr~ie~~~~~G~SPT~ 56 (89)
T cd08796 23 GGLGWRTLAERLSSSWLEVRHIEKYVVQGKSGTR 56 (89)
T ss_pred ccccHHHHHHHHhccHHHHHHHHHHHHcCCCcHH
Confidence 5789999999999888899999987766766654
No 14
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=35.56 E-value=42 Score=21.45 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=16.9
Q ss_pred CchhhhHHHHHHHHHHHHHhh
Q 033610 13 DGWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 13 eG~e~IeptL~e~~~kmrea~ 33 (115)
+-+|.||..++++++++.+.+
T Consensus 12 e~~d~IEqkiedid~qIaeLe 32 (46)
T PF08946_consen 12 EHYDNIEQKIEDIDEQIAELE 32 (46)
T ss_dssp ---THHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhHHHHHHHHHHHH
Confidence 668999999999999999887
No 15
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=35.26 E-value=14 Score=33.36 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=18.0
Q ss_pred HHHhhccccchh---hhhhhhhccc
Q 033610 88 LIAKWKKVHTCS---SFMNKLCKGV 109 (115)
Q Consensus 88 LIaKWKK~GYE~---~~~~~~~~~~ 109 (115)
+-.-|-|+|||. .|+-||+||-
T Consensus 141 ~Q~mWTKKGYdL~~r~CSCrCG~G~ 165 (526)
T KOG3816|consen 141 RQNMWTKKGYDLAFRFCSCRCGQGH 165 (526)
T ss_pred HHHHhhhhhHHHHHHhhcccccccc
Confidence 456799999986 5788999984
No 16
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=35.23 E-value=47 Score=25.36 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.7
Q ss_pred CchhhhHHHHHHHHHHHHHhhCCCCCC
Q 033610 13 DGWELIAPTLREMEAKMREAENDPHDG 39 (115)
Q Consensus 13 eG~e~IeptL~e~~~kmrea~~e~~~~ 39 (115)
.-+|+|..|++||.++++++-..|.++
T Consensus 105 ~E~ekf~e~~~efv~~i~~lGpnp~k~ 131 (132)
T COG1908 105 AEGEKFAETINEFVERIKELGPNPLKG 131 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCccCc
Confidence 358999999999999999988776543
No 17
>KOG4587 consensus Predicted membrane protein [Function unknown]
Probab=34.26 E-value=33 Score=31.68 Aligned_cols=55 Identities=25% Similarity=0.471 Sum_probs=39.8
Q ss_pred hhhhhHHHHhhhhhhhhhHHHHH---------------HHHhcCCCCHHHHHhhc-----cccchhhhhhhhhcccc
Q 033610 54 HQRSQYIFELYYKRNEISKELYE---------------FCLDQGYGDSNLIAKWK-----KVHTCSSFMNKLCKGVS 110 (115)
Q Consensus 54 hqRSRYIydlyYkrk~ISkeLY~---------------~~l~~~yaD~~LIaKWK-----K~GYE~~~~~~~~~~~~ 110 (115)
.+|+-.||.|| -||++| |+|. ||.++-=-|-.|.+-|- -+||-.+|--=+-+.++
T Consensus 512 reRT~~VYSmy-Srk~~~-ev~~~~~~lkvnY~i~~l~~C~~e~rp~C~~~~iWD~edPan~g~t~lC~ll~~~~~p 586 (605)
T KOG4587|consen 512 RERTEHVYSMY-SRKQSS-EVYNQCAQLKVNYLIISLDECTNEVRPDCDLLAIWDDEDPANQGYTQLCHLLLHKNVP 586 (605)
T ss_pred HHHHHHHHHHh-ccccHH-HHHHHHHHhCCcEEEEEhhhhhcccCCCCCchhhccCcCccccCCchhHHHHHHhcCc
Confidence 38999999999 667555 6775 55555567788999994 57888888655544443
No 18
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=32.81 E-value=83 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=15.9
Q ss_pred CCCCCc---hhhhHHHHHHHHHHHHHh
Q 033610 9 TKYPDG---WELIAPTLREMEAKMREA 32 (115)
Q Consensus 9 k~pPeG---~e~IeptL~e~~~kmrea 32 (115)
..||+| |+.|-+.|-.+.++-|..
T Consensus 61 ~~pP~~~G~W~~if~~Lyr~qrr~r~~ 87 (90)
T PF11808_consen 61 DEPPEGSGIWGEIFDRLYRLQRRNRKR 87 (90)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 558888 666666666666666553
No 19
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=30.17 E-value=31 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhh
Q 033610 10 KYPDGWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 10 ~pPeG~e~IeptL~e~~~kmrea~ 33 (115)
-.|+||++++..|+.+..++++|-
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar 54 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQ 54 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999984
No 20
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.06 E-value=59 Score=24.93 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.3
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhh
Q 033610 9 TKYPDGWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 9 k~pPeG~e~IeptL~e~~~kmrea~ 33 (115)
++||+-|+.|..-+++|+.+|..++
T Consensus 10 ~~~d~eF~e~~eyi~~L~~~l~~~~ 34 (200)
T cd07624 10 KNRSPEFDKMNEYLTLFGEKLGTIE 34 (200)
T ss_pred cCCCccHHHHHHHHHHHHHHhHHHH
Confidence 5677789999999999999998876
No 21
>cd08793 Death_IRAK4 Death domain of Interleukin-1 Receptor-Associated Kinase 4. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 4 (IRAK4). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB, and mitogen-activated protein kinases. IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK4 is an active kinase that is also involved in T-cell receptor signaling pathways, implying that it may function in acquired immunity and not just in innate immunity. It is known as the master IRAK member because its absence strongly impairs TLR- and IL-1-mediated signaling and innate immune defenses, while the absence of other IRAK proteins only shows slight effects. IRAK4-deficient patients have impaired inflammatory responses and recurrent life-threatening infections. DDs are protein-protein int
Probab=28.74 E-value=15 Score=26.59 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=27.0
Q ss_pred CCCCchhhhHHHHHH------HHH-HHHHhhCCCCCCCCCCccc
Q 033610 10 KYPDGWELIAPTLRE------MEA-KMREAENDPHDGKRKCETL 46 (115)
Q Consensus 10 ~pPeG~e~IeptL~e------~~~-kmrea~~e~~~~krk~E~l 46 (115)
-|+++|+.+.+.+.. |.. +++..+.....|+.+.+.+
T Consensus 19 Dp~~~W~~LA~~i~~~~~~~~y~~~ei~~ie~~~~~g~SPT~~L 62 (100)
T cd08793 19 DPQEGWKKIAVAIKKPSGDPRYSQFHIRRFEALVQQGKSPTCEL 62 (100)
T ss_pred CCcccHHHHHHHHhcccCCCCCCHHHHHHHHHHHHcCCChHHHH
Confidence 478999999999875 776 6888877555566555543
No 22
>PTZ00087 thrombosponding-related protein; Provisional
Probab=28.49 E-value=31 Score=29.71 Aligned_cols=19 Identities=37% Similarity=0.836 Sum_probs=16.9
Q ss_pred HHHHhhhhhhhhhHHHHHH
Q 033610 59 YIFELYYKRNEISKELYEF 77 (115)
Q Consensus 59 YIydlyYkrk~ISkeLY~~ 77 (115)
-+|..||++|.-.+||||=
T Consensus 314 ily~ify~~k~~ekelyen 332 (340)
T PTZ00087 314 ILYHIFYKKKGAEKELYEN 332 (340)
T ss_pred HHHHHhhhccchHHHHHHh
Confidence 4699999999999999974
No 23
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.66 E-value=29 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.5
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhh
Q 033610 9 TKYPDGWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 9 k~pPeG~e~IeptL~e~~~kmrea~ 33 (115)
-.||+-|..|...|++.++|..-..
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 3579999999999999999987654
No 24
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=25.11 E-value=96 Score=22.58 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCCCCC------------CCccccchhhhhhhh-------hhHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 24 EMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQR-------SQYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 24 e~~~kmrea~~e~~~~kr------------k~E~lWpI~rIhhqR-------SRYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
+++.+.|+|.|+..-|.. ..+.++.|+.+-|.| -|-|| |+.. |-+||+++|
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vy------KaL~--lleyLl~nG 70 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVY------KALT--LLEYLLKNG 70 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHH------HHHH--HHHHHHHhC
Confidence 357788888887765532 123455666555544 24444 3333 899999999
No 25
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=23.81 E-value=53 Score=21.79 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=10.8
Q ss_pred hhHHHHHHHHhcCCCC
Q 033610 70 ISKELYEFCLDQGYGD 85 (115)
Q Consensus 70 ISkeLY~~~l~~~yaD 85 (115)
=|.|+-+||-++|++=
T Consensus 28 ~~~eV~~YC~~~GWIi 43 (57)
T PF08727_consen 28 DSPEVREYCEEQGWII 43 (57)
T ss_dssp --HHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHCCccc
Confidence 4788999999999763
No 26
>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the N-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=23.71 E-value=57 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHhhcccc
Q 033610 68 NEISKELYEFCLDQGYGDSNLIAKWKKVH 96 (115)
Q Consensus 68 k~ISkeLY~~~l~~~yaD~~LIaKWKK~G 96 (115)
..++.++|+-|++.| |++.|
T Consensus 29 ~~~~~~~y~~Ll~~G---------~RRsG 48 (80)
T PF04376_consen 29 ESLSPEDYQQLLDRG---------FRRSG 48 (80)
T ss_pred ccCCHHHHHHHHHhC---------CcccC
Confidence 448999999999999 77766
No 27
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=22.62 E-value=50 Score=23.11 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhh
Q 033610 9 TKYPDGWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 9 k~pPeG~e~IeptL~e~~~kmrea~ 33 (115)
-.||+.|..|...|++.|+|..-.-
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999987654
No 28
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=22.24 E-value=88 Score=27.03 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCCCCC------------CCCccccchhhhhhhhh-------hHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 22 LREMEAKMREAENDPHDGK------------RKCETLWPIFKIAHQRS-------QYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 22 L~e~~~kmrea~~e~~~~k------------rk~E~lWpI~rIhhqRS-------RYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
..+.+.+.|+|.++..=|. .....+|.|+-+-|.|- |+|| |+++ |.||||+.|
T Consensus 19 y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~Vy------KaLt--lleyLl~~G 90 (336)
T KOG2056|consen 19 YSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVY------KALT--LLEYLLKNG 90 (336)
T ss_pred chHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHH------HHHH--HHHHHHhcC
Confidence 4567888999987665442 23456888988888883 4555 3333 999999987
No 29
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=21.52 E-value=70 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhhCCCC
Q 033610 10 KYPDGWELIAPTLREMEAKMREAENDPH 37 (115)
Q Consensus 10 ~pPeG~e~IeptL~e~~~kmrea~~e~~ 37 (115)
--+++|++|...|.+|..++....++..
T Consensus 129 vs~~~~~ki~~~i~~fRk~i~~i~~~~~ 156 (171)
T PF14394_consen 129 VSREDYEKIKKEIREFRKKIIAIAEEDK 156 (171)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3478999999999999999999877653
No 30
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.01 E-value=58 Score=22.44 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhh
Q 033610 9 TKYPDGWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 9 k~pPeG~e~IeptL~e~~~kmrea~ 33 (115)
-.||..|..+-..|++.|+|..-.-
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999987643
No 31
>PRK14134 recX recombination regulator RecX; Provisional
Probab=20.90 E-value=1.9e+02 Score=23.70 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=34.5
Q ss_pred chhhhHHHHHHHHHHHH-Hhh--CCCCCCCCCCccccchhhhhhhhhhHHHH--hhhhhhhhhHHHHHHHHhcCC
Q 033610 14 GWELIAPTLREMEAKMR-EAE--NDPHDGKRKCETLWPIFKIAHQRSQYIFE--LYYKRNEISKELYEFCLDQGY 83 (115)
Q Consensus 14 G~e~IeptL~e~~~kmr-ea~--~e~~~~krk~E~lWpI~rIhhqRSRYIyd--lyYkrk~ISkeLY~~~l~~~y 83 (115)
+++.|..+|.++..+=. +.+ .+.++.-...+++=..+.+ .+.||-.. .=+....+.+.||.||++.||
T Consensus 195 s~~~I~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~kr~~~~~~~e~d~~k~~~Kl~~~L~rkGf 267 (283)
T PRK14134 195 SSNIAEWILNELIKNEALYKDNNSQNIENNIKDENIEELHNL--ARKRYDIIIKSEDDKNKIYRRLSNYLLRRGY 267 (283)
T ss_pred CHHHHHHHHHHHHhHhhhhhhccccchhhccccChHHHHHHH--HHHHHhhhhcccccHHHHHHHHHHHHHhCCC
Confidence 35678888887754331 111 1112211223333233332 34555221 112344588899999999996
No 32
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.78 E-value=1.6e+02 Score=20.51 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCCC------------CCccccchhhhhhhh--------hhHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 23 REMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQR--------SQYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 23 ~e~~~kmrea~~e~~~~kr------------k~E~lWpI~rIhhqR--------SRYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
.+++.+.++|.++..-|.. ....+..|+.+-|.| -|-|| |++. |.+||+.+|
T Consensus 2 s~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~------KaL~--ll~yLl~nG 73 (125)
T PF01417_consen 2 SELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVY------KALT--LLEYLLKNG 73 (125)
T ss_dssp -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHH------HHHH--HHHHHHHHS
T ss_pred CHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHH------HHHH--HHHHHHHHC
Confidence 3677888888887765431 123445555554444 23333 4444 899999999
Q ss_pred C
Q 033610 83 Y 83 (115)
Q Consensus 83 y 83 (115)
-
T Consensus 74 ~ 74 (125)
T PF01417_consen 74 S 74 (125)
T ss_dssp -
T ss_pred C
Confidence 4
No 33
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=20.01 E-value=94 Score=21.38 Aligned_cols=20 Identities=15% Similarity=0.536 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCCHHHHHhh
Q 033610 73 ELYEFCLDQGYGDSNLIAKW 92 (115)
Q Consensus 73 eLY~~~l~~~yaD~~LIaKW 92 (115)
|=.+||+++||-|..++++-
T Consensus 46 Erl~yLv~~~YYe~~~l~~Y 65 (82)
T PF08343_consen 46 ERLDYLVENDYYEKEVLDKY 65 (82)
T ss_dssp HHHHHHHHTTSB-HHHHTTS
T ss_pred HHHHHHHHcCcHHHHHHHhC
Confidence 34689999999999999763
Done!