Query 033610
Match_columns 115
No_of_seqs 102 out of 149
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ou8_A Stringent starvation pr 58.4 4.5 0.00015 28.8 1.8 14 70-83 12-25 (111)
2 1yfn_A Stringent starvation pr 57.4 4.8 0.00016 29.0 1.8 14 70-83 13-26 (118)
3 1jmt_B Splicing factor U2AF 65 55.5 2.9 9.9E-05 23.3 0.3 13 9-21 9-21 (28)
4 1ou9_A Stringent starvation pr 53.1 6.1 0.00021 28.9 1.8 14 70-83 12-25 (129)
5 2l6w_A Beta-type platelet-deri 53.7 3.8 0.00013 24.5 0.0 11 88-98 28-39 (39)
6 3nrw_A Phage integrase/site-sp 47.3 7.9 0.00027 24.7 1.5 24 72-95 84-107 (117)
7 3lys_A Prophage PI2 protein 01 43.0 7.6 0.00026 24.4 0.9 30 70-99 78-107 (112)
8 1xgw_A Epsin 4; ENTH, enthopro 35.1 54 0.0019 24.4 4.6 53 23-83 33-105 (176)
9 1r48_A Proline/betaine transpo 29.8 44 0.0015 18.8 2.6 20 14-33 2-21 (33)
10 2d4p_A Hypothetical protein TT 29.3 15 0.00053 26.4 0.7 49 51-100 57-118 (141)
11 1eyh_A Epsin; superhelix of he 28.8 49 0.0017 23.6 3.3 51 24-82 5-74 (144)
12 2kj5_A Phage integrase; GFT PS 27.7 27 0.00091 21.4 1.5 24 72-95 80-103 (116)
13 2key_A Putative phage integras 27.6 38 0.0013 20.7 2.2 24 72-95 83-106 (112)
14 3i5p_A Nucleoporin NUP170; hel 27.4 24 0.00081 30.3 1.6 23 66-88 176-198 (525)
15 2oxo_A Integrase; DNA-binding 27.3 18 0.00062 21.0 0.7 23 71-93 74-96 (103)
16 2kkp_A Phage integrase; SAM-li 26.5 27 0.00091 21.3 1.4 22 72-93 83-104 (117)
17 2khq_A Integrase; all-alpha, s 26.5 28 0.00097 21.0 1.5 22 72-93 76-97 (110)
18 1ng7_A Poliovirus 3A-N, genome 26.2 31 0.0011 22.1 1.7 16 70-85 30-45 (60)
19 2kob_A Uncharacterized protein 25.0 29 0.001 20.8 1.3 20 72-91 74-93 (108)
20 3onk_A Epsin-3, ENT3; helix, p 23.4 87 0.003 22.6 3.8 51 24-82 11-81 (150)
21 1inz_A EPS15-interacting porte 22.8 80 0.0027 22.6 3.5 51 24-82 23-92 (148)
22 2kiw_A INT protein; alpha, str 21.3 26 0.00091 21.3 0.6 24 72-95 73-96 (111)
No 1
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=58.39 E-value=4.5 Score=28.81 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=11.9
Q ss_pred hhHHHHHHHHhcCC
Q 033610 70 ISKELYEFCLDQGY 83 (115)
Q Consensus 70 ISkeLY~~~l~~~y 83 (115)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (111)
T 1ou8_A 12 LLRAYYDWLVDNSF 25 (111)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 2
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=57.36 E-value=4.8 Score=28.95 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhcCC
Q 033610 70 ISKELYEFCLDQGY 83 (115)
Q Consensus 70 ISkeLY~~~l~~~y 83 (115)
+=|.+||||+++++
T Consensus 13 LiRA~yeWi~DN~~ 26 (118)
T 1yfn_A 13 LLRAFYEWLLDNQL 26 (118)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC
Confidence 55789999999996
No 3
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=55.49 E-value=2.9 Score=23.34 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.9
Q ss_pred CCCCCchhhhHHH
Q 033610 9 TKYPDGWELIAPT 21 (115)
Q Consensus 9 k~pPeG~e~Iept 21 (115)
-.||+|||.|-|.
T Consensus 9 DvpP~GyE~vtp~ 21 (28)
T 1jmt_B 9 DVPPPGFEHITPM 21 (28)
T ss_dssp TCCCTTCTTSCHH
T ss_pred CCCCCCccccCHH
Confidence 6799999988773
No 4
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=53.14 E-value=6.1 Score=28.86 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=11.9
Q ss_pred hhHHHHHHHHhcCC
Q 033610 70 ISKELYEFCLDQGY 83 (115)
Q Consensus 70 ISkeLY~~~l~~~y 83 (115)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (129)
T 1ou9_A 12 LLRAYYDWLVDNSF 25 (129)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 5
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=53.66 E-value=3.8 Score=24.50 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=8.0
Q ss_pred HHHhhc-cccch
Q 033610 88 LIAKWK-KVHTC 98 (115)
Q Consensus 88 LIaKWK-K~GYE 98 (115)
||.+|+ ||-||
T Consensus 28 Li~~w~qKPrYe 39 (39)
T 2l6w_A 28 LIMLWQKKPRYE 39 (39)
Confidence 678887 66665
No 6
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=47.33 E-value=7.9 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCHHHHHhhccc
Q 033610 72 KELYEFCLDQGYGDSNLIAKWKKV 95 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaKWKK~ 95 (115)
+-+|+||+++|+++.|..+.-+.+
T Consensus 84 r~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 84 KNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp HHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred HHHHHHHHHcCCcccCHHHHccCC
Confidence 458999999999999987765544
No 7
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=43.04 E-value=7.6 Score=24.38 Aligned_cols=30 Identities=3% Similarity=-0.033 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhcCCCCHHHHHhhccccchh
Q 033610 70 ISKELYEFCLDQGYGDSNLIAKWKKVHTCS 99 (115)
Q Consensus 70 ISkeLY~~~l~~~yaD~~LIaKWKK~GYE~ 99 (115)
+=+.+++|++++|+++.|-.+.=+.+|-|-
T Consensus 78 ~l~~i~~~Av~~g~i~~NP~~~v~~~~~~~ 107 (112)
T 3lys_A 78 RVRASIQCLIEEGRLQKDFTTRAVVKGLEH 107 (112)
T ss_dssp HHHHHHHHHHHTTSCSSCTTSSTTCCCCCC
T ss_pred HHHHHHHHHHHCCCcccCccccceeccccc
Confidence 335799999999999999988888888763
No 8
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=35.13 E-value=54 Score=24.37 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCCCCCC------------CCccccchhhhhhhhh--------hHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 23 REMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQRS--------QYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 23 ~e~~~kmrea~~e~~~~kr------------k~E~lWpI~rIhhqRS--------RYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
.+.+.+.|+|.++.+-|.. ..+.++.|+.+-|.|- |-|| |++. |.+||+++|
T Consensus 33 s~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vy------KaL~--LLeYLl~nG 104 (176)
T 1xgw_A 33 SEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVY------KSLL--LLAYLIRNG 104 (176)
T ss_dssp CHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHH------HHHH--HHHHHHHHS
T ss_pred CHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHH------HHHH--HHHHHHHhC
Confidence 3566788999988765542 2466788888877772 3343 3343 999999999
Q ss_pred C
Q 033610 83 Y 83 (115)
Q Consensus 83 y 83 (115)
-
T Consensus 105 s 105 (176)
T 1xgw_A 105 S 105 (176)
T ss_dssp C
T ss_pred C
Confidence 3
No 9
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=29.83 E-value=44 Score=18.76 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=17.3
Q ss_pred chhhhHHHHHHHHHHHHHhh
Q 033610 14 GWELIAPTLREMEAKMREAE 33 (115)
Q Consensus 14 G~e~IeptL~e~~~kmrea~ 33 (115)
|.+.|+-.++.++++..+++
T Consensus 2 ~~Dnie~~iedi~~ei~~l~ 21 (33)
T 1r48_A 2 GGDNIEQKIDDIDHEIADLQ 21 (33)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHhhhhHHHHHHHHH
Confidence 78889999999999888875
No 10
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=29.32 E-value=15 Score=26.39 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHhhhhhhhhhHHHHH----HHHhcCC------C---CHHHHHhhccccchhh
Q 033610 51 KIAHQRSQYIFELYYKRNEISKELYE----FCLDQGY------G---DSNLIAKWKKVHTCSS 100 (115)
Q Consensus 51 rIhhqRSRYIydlyYkrk~ISkeLY~----~~l~~~y------a---D~~LIaKWKK~GYE~~ 100 (115)
.- =.|.=|||||+|.++-|.+.|-+ |+.++|. + +....+-|.+.||...
T Consensus 57 ~g-dg~~~~L~dl~~R~~GIG~~Ll~~a~~~a~~~G~~rv~L~~~~~N~~a~~fye~~Gf~~~ 118 (141)
T 2d4p_A 57 QG-EATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALG 118 (141)
T ss_dssp CS-SSEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEECCCTTCHHHHHHHHHTTCCCC
T ss_pred Ec-CCeEEEEeHHhhccccHHHHHHHHHHHHHHHCCCCEEEEEecccCHHHHHHHHHCCCEec
Confidence 45 77888999999999999999875 5556662 2 3457888999999654
No 11
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=28.77 E-value=49 Score=23.62 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=32.8
Q ss_pred HHHHHHHHhhCCCCCCCC------------CCccccchhhhhhhhh-------hHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 24 EMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQRS-------QYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 24 e~~~kmrea~~e~~~~kr------------k~E~lWpI~rIhhqRS-------RYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
+++.+.|+|.++..-|.. ..+.++.|+.+-|.|- |-|| |+.. |.+||+++|
T Consensus 5 ~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vy------KaL~--lleyLl~nG 74 (144)
T 1eyh_A 5 EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVY------KAMT--LMEYLIKTG 74 (144)
T ss_dssp HHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHH------HHHH--HHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHh------HHHH--HHHHHHHhC
Confidence 567888999988765532 1244566666665552 3333 2333 899999998
No 12
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=27.65 E-value=27 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCCHHHHHhhccc
Q 033610 72 KELYEFCLDQGYGDSNLIAKWKKV 95 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaKWKK~ 95 (115)
+.+++|++++|+++.|-...-+.+
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~i~~p 103 (116)
T 2kj5_A 80 KRMFNYAIKRHIIEYNPAAAFDPG 103 (116)
T ss_dssp HHHHHHHHHTTSCSSCGGGGSCCC
T ss_pred HHHHHHHHHcCccccCchhhCCCC
Confidence 568999999999998876655443
No 13
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=27.62 E-value=38 Score=20.66 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCCHHHHHhhccc
Q 033610 72 KELYEFCLDQGYGDSNLIAKWKKV 95 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaKWKK~ 95 (115)
+-+|+|++++|+++.|-...-+.|
T Consensus 83 r~~~~~a~~~~~i~~nP~~~v~~p 106 (112)
T 2key_A 83 KIYVSAAIKKGYMENDPFKDFGLE 106 (112)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHTCC
T ss_pred HHHHHHHHHCCCcccCCcccCCCc
Confidence 468999999999998876655443
No 14
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=27.44 E-value=24 Score=30.29 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHHHhcCCCCHHH
Q 033610 66 KRNEISKELYEFCLDQGYGDSNL 88 (115)
Q Consensus 66 krk~ISkeLY~~~l~~~yaD~~L 88 (115)
+.+..--.||+|++.+|..|.-|
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL 198 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLL 198 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGG
T ss_pred ChHHHHHHHHHHHHhCCCcchhh
Confidence 44555667999999999877543
No 15
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=27.29 E-value=18 Score=20.98 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=16.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHhhc
Q 033610 71 SKELYEFCLDQGYGDSNLIAKWK 93 (115)
Q Consensus 71 SkeLY~~~l~~~yaD~~LIaKWK 93 (115)
=+.+++|++++|+++.|-...-+
T Consensus 74 l~~~~~~a~~~~~i~~nP~~~v~ 96 (103)
T 2oxo_A 74 LSDAFREAIAEGHITTNHVAATR 96 (103)
T ss_dssp HHHHHHHHHHTTSCSSCTTC---
T ss_pred HHHHHHHHHHcCCCCCChHhhcC
Confidence 35689999999999887654433
No 16
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=26.55 E-value=27 Score=21.32 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCCHHHHHhhc
Q 033610 72 KELYEFCLDQGYGDSNLIAKWK 93 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaKWK 93 (115)
+.+++|++++|+++.|-...-+
T Consensus 83 ~~~~~~A~~~~~i~~nP~~~i~ 104 (117)
T 2kkp_A 83 HEAMSQARESGLLLQNPTEAAK 104 (117)
T ss_dssp HHHHHHHHTTTSCSSCGGGGSC
T ss_pred HHHHHHHHHCCCcccCccccCC
Confidence 4689999999998877665444
No 17
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=26.52 E-value=28 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCCHHHHHhhc
Q 033610 72 KELYEFCLDQGYGDSNLIAKWK 93 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaKWK 93 (115)
+.+|+|++++|+++.|-...-+
T Consensus 76 ~~~~~~a~~~~~i~~NP~~~v~ 97 (110)
T 2khq_A 76 RNAFDDAIHEGYVIKNPTYKAE 97 (110)
T ss_dssp HHHHHHHHHTTCCCCCGGGGCC
T ss_pred HHHHHHHHHCCCcccCcccccc
Confidence 5689999999999988765443
No 18
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=26.24 E-value=31 Score=22.06 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=13.3
Q ss_pred hhHHHHHHHHhcCCCC
Q 033610 70 ISKELYEFCLDQGYGD 85 (115)
Q Consensus 70 ISkeLY~~~l~~~yaD 85 (115)
=|.|+-+||.++|++=
T Consensus 30 ds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 30 DSQEVRDYCEKKGWIV 45 (60)
T ss_dssp CCHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHCCcee
Confidence 3688999999999863
No 19
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=25.04 E-value=29 Score=20.80 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCCHHHHHh
Q 033610 72 KELYEFCLDQGYGDSNLIAK 91 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaK 91 (115)
+.+++|++++|+++.|-...
T Consensus 74 ~~~~~~A~~~~~i~~NP~~~ 93 (108)
T 2kob_A 74 SQIFRLAIENRAIDFNPADY 93 (108)
T ss_dssp HHHHHHHHHTTSSSSCGGGT
T ss_pred HHHHHHHHHcCCcccCcccc
Confidence 56899999999988876554
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=23.43 E-value=87 Score=22.58 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCCCCCC------------CCccccchhhhhhhh--------hhHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 24 EMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQR--------SQYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 24 e~~~kmrea~~e~~~~kr------------k~E~lWpI~rIhhqR--------SRYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
+++.+.|+|.++.+-|.. ..+.++.|+.+-|.| =|.|| |++. |.+||+++|
T Consensus 11 ~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vy------KaL~--lLeyLl~nG 81 (150)
T 3onk_A 11 EMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIY------KALQ--LLDYLIKHG 81 (150)
T ss_dssp HHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHH------HHHH--HHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHH------HHHH--HHHHHHHhC
Confidence 677889999987765532 234556666665554 13333 3333 999999999
No 21
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=22.77 E-value=80 Score=22.65 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=32.4
Q ss_pred HHHHHHHHhhCCCCCCCCC------------Cccccchhhhhhhhh-------hHHHHhhhhhhhhhHHHHHHHHhcC
Q 033610 24 EMEAKMREAENDPHDGKRK------------CETLWPIFKIAHQRS-------QYIFELYYKRNEISKELYEFCLDQG 82 (115)
Q Consensus 24 e~~~kmrea~~e~~~~krk------------~E~lWpI~rIhhqRS-------RYIydlyYkrk~ISkeLY~~~l~~~ 82 (115)
+++.+.|+|.++..-|... .+.++.|+.+-|.|- |-|| |+.. |.+||+++|
T Consensus 23 ~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vy------KaL~--lleyLl~nG 92 (148)
T 1inz_A 23 EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVY------KAMT--LMEYLIKTG 92 (148)
T ss_dssp CHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHH------HHHH--HHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhh------HHHH--HHHHHHHhC
Confidence 4567789999887655432 244566666665553 2333 3333 899999998
No 22
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=21.25 E-value=26 Score=21.27 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCCHHHHHhhccc
Q 033610 72 KELYEFCLDQGYGDSNLIAKWKKV 95 (115)
Q Consensus 72 keLY~~~l~~~yaD~~LIaKWKK~ 95 (115)
+.+++|++++|+++.|-...-+.+
T Consensus 73 r~~~~~A~~~~~i~~nP~~~i~~p 96 (111)
T 2kiw_A 73 NMIFKYAYDTRLIKAMPSEGIKRP 96 (111)
T ss_dssp HHHHHHHHHTTSCSCCTTTTCCCC
T ss_pred HHHHHHHHHhCChhhCccccCCCC
Confidence 568999999999998876555443
Done!