Query 033610
Match_columns 115
No_of_seqs 102 out of 149
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 06:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033610.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033610hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ou8a_ b.136.1.1 (A:) Stringe 55.4 2.6 0.00019 28.1 1.8 14 70-83 8-21 (106)
2 d1yfna1 b.136.1.1 (A:4-111) St 52.6 3 0.00022 27.8 1.8 15 70-84 10-24 (108)
3 d3ci0k1 a.60.16.1 (K:204-274) 40.7 5.2 0.00038 24.7 1.4 15 9-23 35-49 (71)
4 d2ho2a1 b.72.1.1 (A:253-285) A 38.5 1.4 0.0001 24.2 -1.5 11 11-21 3-13 (33)
5 d1a0pa1 a.60.9.1 (A:3-100) Rec 37.1 6.4 0.00047 23.8 1.4 30 58-87 55-93 (98)
6 d2qtva4 d.109.2.1 (A:627-768) 31.6 5.3 0.00039 27.7 0.3 12 87-98 42-53 (142)
7 d1z4ea1 d.108.1.1 (A:4-153) Tr 22.2 10 0.00073 23.0 0.3 36 65-100 94-142 (150)
8 d1zq1c1 a.182.1.2 (C:457-512) 21.8 26 0.0019 19.7 2.1 19 73-92 31-49 (56)
9 d1hf2a2 c.102.1.1 (A:1-99) Cel 21.6 30 0.0022 22.5 2.7 27 13-39 16-42 (99)
10 d2cuja1 a.4.1.18 (A:8-108) Tra 19.7 22 0.0016 22.6 1.7 15 72-86 86-100 (101)
No 1
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=55.38 E-value=2.6 Score=28.08 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=11.8
Q ss_pred hhHHHHHHHHhcCC
Q 033610 70 ISKELYEFCLDQGY 83 (115)
Q Consensus 70 ISkeLY~~~l~~~y 83 (115)
+=|.+||||+++|+
T Consensus 8 LiRA~y~W~~Dn~~ 21 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSF 21 (106)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCC
Confidence 44779999999996
No 2
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=52.57 E-value=3 Score=27.79 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhcCCC
Q 033610 70 ISKELYEFCLDQGYG 84 (115)
Q Consensus 70 ISkeLY~~~l~~~ya 84 (115)
+=|.+||||+++|+-
T Consensus 10 liRA~y~W~~Dn~~T 24 (108)
T d1yfna1 10 LLRAFYEWLLDNQLT 24 (108)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 457899999999953
No 3
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=40.66 E-value=5.2 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.2
Q ss_pred CCCCCchhhhHHHHH
Q 033610 9 TKYPDGWELIAPTLR 23 (115)
Q Consensus 9 k~pPeG~e~IeptL~ 23 (115)
.+|+.||+.|++.+.
T Consensus 35 ~RP~~Gw~sv~~F~~ 49 (71)
T d3ci0k1 35 QRPAKGWEDVDQFLA 49 (71)
T ss_dssp TCCTTCCSCHHHHHT
T ss_pred hCCcchhhhHHHHHh
Confidence 579999999999875
No 4
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.48 E-value=1.4 Score=24.23 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=8.5
Q ss_pred CCCchhhhHHH
Q 033610 11 YPDGWELIAPT 21 (115)
Q Consensus 11 pPeG~e~Iept 21 (115)
-|+||++|+++
T Consensus 3 LPpGW~ki~D~ 13 (33)
T d2ho2a1 3 LPAGWMRVQDT 13 (33)
T ss_dssp SCTTEEEEECS
T ss_pred CCCcceeeecC
Confidence 38899998763
No 5
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=37.06 E-value=6.4 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.403 Sum_probs=18.4
Q ss_pred hHHHHhh---hhhhhhhHH------HHHHHHhcCCCCHH
Q 033610 58 QYIFELY---YKRNEISKE------LYEFCLDQGYGDSN 87 (115)
Q Consensus 58 RYIydly---Ykrk~ISke------LY~~~l~~~yaD~~ 87 (115)
.|+-.|. ++...|.+. +|.||.++|+++.|
T Consensus 55 ~yl~~l~~~g~s~~Ti~r~lsalr~ff~~l~~~~~i~~n 93 (98)
T d1a0pa1 55 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 93 (98)
T ss_dssp HHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHCCCcCcC
Confidence 4665543 233444444 69999999999865
No 6
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.62 E-value=5.3 Score=27.70 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.5
Q ss_pred HHHHhhccccch
Q 033610 87 NLIAKWKKVHTC 98 (115)
Q Consensus 87 ~LIaKWKK~GYE 98 (115)
.-||.|+|+||.
T Consensus 42 ~~Ia~Wrkagy~ 53 (142)
T d2qtva4 42 EQIAQWRKAGYQ 53 (142)
T ss_dssp HHHHHHHHHTGG
T ss_pred cHHHHHHHcCCc
Confidence 669999999994
No 7
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]}
Probab=22.23 E-value=10 Score=23.03 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=25.9
Q ss_pred hhhhhhhHHHHHHHHh----cCC---------CCHHHHHhhccccchhh
Q 033610 65 YKRNEISKELYEFCLD----QGY---------GDSNLIAKWKKVHTCSS 100 (115)
Q Consensus 65 Ykrk~ISkeLY~~~l~----~~y---------aD~~LIaKWKK~GYE~~ 100 (115)
|+++-|.+.|++++++ +|. -+...++-|+|-||+.+
T Consensus 94 ~rg~Gig~~l~~~~~~~a~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~ 142 (150)
T d1z4ea1 94 ARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKAS 142 (150)
T ss_dssp STTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHHTCEEE
T ss_pred HcCCChhHHHHHHHHHHHHHcCCCEEEEEEcCCCHHHHHHHHHCCCEEc
Confidence 5677799988888654 441 13557899999999764
No 8
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=21.83 E-value=26 Score=19.72 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCCHHHHHhh
Q 033610 73 ELYEFCLDQGYGDSNLIAKW 92 (115)
Q Consensus 73 eLY~~~l~~~yaD~~LIaKW 92 (115)
+.|+=++..| +|+.|+|.|
T Consensus 31 ~~Fee~v~~~-~~pklaAnw 49 (56)
T d1zq1c1 31 ELFEELVSMG-VKPSLAASI 49 (56)
T ss_dssp HHHHHHHHTT-CSTTHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHH
Confidence 3777788776 999999999
No 9
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.63 E-value=30 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.3
Q ss_pred CchhhhHHHHHHHHHHHHHhhCCCCCC
Q 033610 13 DGWELIAPTLREMEAKMREAENDPHDG 39 (115)
Q Consensus 13 eG~e~IeptL~e~~~kmrea~~e~~~~ 39 (115)
+.|+.||+.|+|.+++|.++-+=..+|
T Consensus 16 ~~Y~~lE~llneI~~K~~~m~~FFa~g 42 (99)
T d1hf2a2 16 KDYQNLEEVLNAISARITQMGGFFAKG 42 (99)
T ss_dssp CCCSCHHHHHHHHHHHHHHTGGGCCTT
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhcCC
Confidence 468999999999999999987655444
No 10
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.74 E-value=22 Score=22.56 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCCCH
Q 033610 72 KELYEFCLDQGYGDS 86 (115)
Q Consensus 72 keLY~~~l~~~yaD~ 86 (115)
+.|||+++++|++.+
T Consensus 86 ~rIydfl~~~GWi~~ 100 (101)
T d2cuja1 86 RKIYDFLIREGYITK 100 (101)
T ss_dssp HHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHccCccc
Confidence 457777788877653
Done!