Query 033611
Match_columns 115
No_of_seqs 162 out of 1026
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ux2_A MIP18 family protein FA 99.9 5E-24 1.7E-28 151.4 5.4 78 37-114 9-89 (130)
2 1uwd_A Hypothetical protein TM 99.8 4.7E-21 1.6E-25 129.7 9.0 76 35-114 5-80 (103)
3 3lno_A Putative uncharacterize 99.8 2E-21 6.8E-26 133.0 5.4 77 35-114 7-83 (108)
4 3cq1_A Putative uncharacterize 99.8 3.1E-20 1E-24 125.8 7.5 73 37-114 7-79 (103)
5 1xhj_A Nitrogen fixation prote 95.5 0.058 2E-06 35.3 6.7 69 38-114 9-78 (88)
6 1veh_A NIFU-like protein hirip 94.1 0.091 3.1E-06 34.6 4.9 71 38-115 15-86 (92)
7 2z51_A NIFU-like protein 2, ch 90.0 1.1 3.9E-05 31.7 6.8 71 35-115 84-154 (154)
8 1th5_A NIFU1; iron-sulfur clus 89.9 0.35 1.2E-05 30.5 3.7 70 35-115 3-73 (74)
9 2z51_A NIFU-like protein 2, ch 88.1 0.84 2.9E-05 32.5 5.0 72 35-114 3-75 (154)
10 2dyj_A Ribosome-binding factor 76.7 12 0.00039 24.1 6.7 40 39-85 14-53 (95)
11 1jos_A RBFA, ribosome-binding 50.3 47 0.0016 22.2 5.9 40 39-85 17-57 (128)
12 1pa4_A Probable ribosome-bindi 34.1 44 0.0015 22.0 3.6 40 39-85 15-55 (116)
13 2q5w_E Molybdopterin-convertin 33.7 38 0.0013 23.6 3.3 69 34-114 10-79 (149)
14 1xoc_A Oligopeptide-binding pr 28.3 81 0.0028 25.0 4.9 56 34-94 96-153 (520)
15 2zzt_A Putative uncharacterize 27.6 1.2E+02 0.004 19.1 6.6 65 37-112 11-78 (107)
16 2wp4_A Molybdopterin-convertin 25.2 96 0.0033 21.4 4.2 69 34-114 18-87 (147)
17 1uqw_A Putative binding protei 22.9 89 0.0031 24.7 4.2 56 34-94 99-155 (509)
18 1ic9_A TH10AOX; three stranded 21.0 39 0.0013 17.1 1.1 10 81-90 10-19 (29)
No 1
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.89 E-value=5e-24 Score=151.44 Aligned_cols=78 Identities=54% Similarity=0.925 Sum_probs=70.3
Q ss_pred CHHHHHHHhcCCCCCCCCCCceeccceeeccEEE---eCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEE
Q 033611 37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVR 113 (115)
Q Consensus 37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i---~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~ 113 (115)
++++||++|++|+|||+|++|++||+||+++|.+ +++++.|.|+||||+|||||++.|+.+|+.+|++++|+.++|+
T Consensus 9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 5789999999999999999999999999976754 3344579999999999999999999999999988899988887
Q ss_pred e
Q 033611 114 R 114 (115)
Q Consensus 114 v 114 (115)
+
T Consensus 89 v 89 (130)
T 3ux2_A 89 I 89 (130)
T ss_dssp C
T ss_pred E
Confidence 6
No 2
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.85 E-value=4.7e-21 Score=129.72 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=69.4
Q ss_pred cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR 114 (115)
Q Consensus 35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v 114 (115)
|+++++|+++|++|+|||+|.||++||+||+ |.+++++ +|+|.|++|+|+||+...|..+++++| ++++|..+|+|
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~~-~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V 80 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYD--IQIDDQN-NVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVEV 80 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCC--EEECTTC-EEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEE
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeE--EEEcCCC-EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCcceEEE
Confidence 5789999999999999999999999999999 9997543 799999999999999999999999999 78888766654
No 3
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.84 E-value=2e-21 Score=133.05 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=69.2
Q ss_pred cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR 114 (115)
Q Consensus 35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v 114 (115)
+.++++|+++|++|+|||+|+||++||+||+ |.+++++ +|+|+|+||+|+||+...|..+++.+|+++++|..+|+|
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~--I~v~~~~-~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYD--VTADENN-NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEE--EEECTTC-CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCCHHHcCCceE--EEECCCC-eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 4688999999999999999999999999999 9997543 799999999999999999999999999667888766554
No 4
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.82 E-value=3.1e-20 Score=125.82 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=67.3
Q ss_pred CHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611 37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR 114 (115)
Q Consensus 37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v 114 (115)
++++|+++|++|+|||+|.+|++||+||+ |.++++ .|+|+|++|+|+||+...|..+++++| ++++|..+|+|
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~--~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V 79 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYD--LVVEPP--RAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEV 79 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEE--EEEETT--EEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEE--EEEECC--EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCceeEEE
Confidence 57899999999999999999999999999 999754 799999999999999999999999999 78888766654
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=95.47 E-value=0.058 Score=35.27 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEEe
Q 033611 38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVRR 114 (115)
Q Consensus 38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~v 114 (115)
.+.|.++|.+ .=|-+-. +=|=|.- +.+++ +.|+|.|.=...|||++.. ++..|+++|++.+|+...|..
T Consensus 9 ~~~I~~~L~~-IRP~L~~---dGGdvel--v~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~ 78 (88)
T 1xhj_A 9 FDQVAEVIER-LRPFLLR---DGGDCTL--VDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ 78 (88)
T ss_dssp HHHHHHHHHH-HHHHHHH---HSCEEEE--EECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHH-hcHHHHh---cCCeEEE--EEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4455555554 3343322 2233333 44442 4799999999999999976 777999999888998777654
No 6
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=94.07 E-value=0.091 Score=34.57 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEEeC
Q 033611 38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVRRV 115 (115)
Q Consensus 38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~v~ 115 (115)
.+.|.++|.+-.=|-+-. +=|=|.- +.+++ +.|+|.|.=...|||++.. ++..|+++|++.+|...+|..|
T Consensus 15 ~~~I~~~L~~~IRP~L~~---dGGdvel--v~v~~--g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v 86 (92)
T 1veh_A 15 VAMIKELLDTRIRPTVQE---DGGDVIY--RGFED--GIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp HHHHHHHHHHTTHHHHHH---HSCCCCE--EEEET--TEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred HHHHHHHHHHHhhHHHHh---cCCeEEE--EEEeC--CEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence 344556665433344322 2233333 44543 3799999888999999976 7779999998889988777643
No 7
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=89.99 E-value=1.1 Score=31.74 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=49.7
Q ss_pred cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR 114 (115)
Q Consensus 35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v 114 (115)
.++++.|-++|..++ |-+..+ +=|=|.- +.+++ +.|+|.++=...+| ..++..|+++|++.+|+..+|..
T Consensus 84 ~L~~~~v~~~L~~iR-P~L~~~--dGGdvel--v~v~~--~~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~~ 153 (154)
T 2z51_A 84 ELNEENIEKVLEEIR-PYLIGT--ADGSLDL--VEIED--PIVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQL 153 (154)
T ss_dssp CSSHHHHHHHHHHHG-GGCCGG--GCCEEEE--EEEET--TEEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHH-HHhhhc--CCCCeEE--EEEEC--CEEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEEe
Confidence 578888888887643 555321 2344555 56654 37888888765555 67888999999999999988875
Q ss_pred C
Q 033611 115 V 115 (115)
Q Consensus 115 ~ 115 (115)
+
T Consensus 154 ~ 154 (154)
T 2z51_A 154 I 154 (154)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=89.94 E-value=0.35 Score=30.47 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=49.9
Q ss_pred cCCHHHHHHHhcCCCCCCCCCCc-eeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEE
Q 033611 35 QIDQQEVFDHVRDIKDPEHPYSL-EELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVR 113 (115)
Q Consensus 35 ~it~~~I~~aL~~V~DPEi~~~I-vdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~ 113 (115)
.++.+.|.++|.+ .-|-+..+= -+.-+ +.+++ +.|+|.++=...+| ..++..|+++|++.+|+..+|.
T Consensus 3 ~~~~~~V~~~L~~-iRP~L~~dGGGdvel-----v~v~~--g~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V~ 71 (74)
T 1th5_A 3 ELNEENVEKVLNE-IRPYLAGTGGGGLQF-----LMIKG--PIVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIVQ 71 (74)
T ss_dssp CCSHHHHHHHHTT-THHHHTTTTCCCCCC-----CEEET--TEEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEEE
T ss_pred hHHHHHHHHHHHH-HhHHHHhcCCCcEEE-----EEEeC--CEEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEEE
Confidence 3578889999987 566655443 33333 33443 37888888777788 5888999999988999988876
Q ss_pred eC
Q 033611 114 RV 115 (115)
Q Consensus 114 v~ 115 (115)
.|
T Consensus 72 ~v 73 (74)
T 1th5_A 72 LL 73 (74)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 9
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=88.15 E-value=0.84 Score=32.45 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=50.4
Q ss_pred cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEE
Q 033611 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVR 113 (115)
Q Consensus 35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~ 113 (115)
+++.++|.++|.. .=|-+-.+= |=|.- +.+++ +.|+|.+.=...|||++.. +...|+++|++.+|...+|.
T Consensus 3 ~~~~e~v~~~L~~-iRP~l~~dG---Gdvel--v~v~~--~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~ 74 (154)
T 2z51_A 3 PLTEENVESVLDE-IRPYLMSDG---GNVAL--HEIDG--NVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVE 74 (154)
T ss_dssp CSCHHHHHHHHHH-HHHHHHHTT---EEEEE--EEEET--TEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cchHHHHHHHHHH-hChHHHhcC---CeEEE--EEEEC--CEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEE
Confidence 4677778777765 344443332 33333 44553 3799999999999999764 77799999988899877775
Q ss_pred e
Q 033611 114 R 114 (115)
Q Consensus 114 v 114 (115)
-
T Consensus 75 ~ 75 (154)
T 2z51_A 75 A 75 (154)
T ss_dssp E
T ss_pred E
Confidence 4
No 10
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=76.72 E-value=12 Score=24.09 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCC
Q 033611 39 QEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTV 85 (115)
Q Consensus 39 ~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~ 85 (115)
.++-+.|++++||-++ .+ -|.+ |++..+...++|.++.-.
T Consensus 14 ~~ls~il~ei~Dprl~--~v---tVt~--V~vs~Dl~~AkVyvs~~~ 53 (95)
T 2dyj_A 14 RALAEEIQALEDPRLF--LL---TVEA--VRLSKDGSVLSVYVEAFR 53 (95)
T ss_dssp HHHHHHHHTCCCGGGT--TC---EEEE--EEECTTSSEEEEEEECSS
T ss_pred HHHHHHHHHhcCcccC--cE---EEEE--EEECCCCCEEEEEEEeCC
Confidence 4455666899999885 22 2445 888877778888887653
No 11
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=50.35 E-value=47 Score=22.22 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=27.7
Q ss_pred HHHHHHh-cCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCC
Q 033611 39 QEVFDHV-RDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTV 85 (115)
Q Consensus 39 ~~I~~aL-~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~ 85 (115)
.+|-+.| +.++||-++ .+ -|.+ |++..+-..++|.+++..
T Consensus 17 ~~ls~il~~eikDprl~--~v---tVt~--V~vS~Dl~~AkVyvs~~g 57 (128)
T 1jos_A 17 KEIAVILQREVKDPRIG--MV---TVSD--VEVSSDLSYAKIFVTFLF 57 (128)
T ss_dssp HHHHHHHHHHCCCTTTC--CE---EEEE--EEECTTSCEEEEEEEESC
T ss_pred HHHHHHHHHHccCCccC--ce---EEeE--EEECCCCCEEEEEEEeCC
Confidence 3344454 689999886 22 2445 888877778899888865
No 12
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=34.14 E-value=44 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=26.6
Q ss_pred HHHHHHh-cCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCC
Q 033611 39 QEVFDHV-RDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTV 85 (115)
Q Consensus 39 ~~I~~aL-~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~ 85 (115)
.++-+.| +.++||-++ .+ -|.+ |++..+-..++|.+++..
T Consensus 15 ~~ls~il~~eikDprl~--~v---tVt~--V~vs~Dl~~AkVyvs~~~ 55 (116)
T 1pa4_A 15 RLINRTVIHEIYNETVK--TG---HVTH--VKLSDDLLHVTVYLDCYN 55 (116)
T ss_dssp HHHHHHHTTCSSSSCHH--HH---CCSC--CEEETTTTEEEECCCCSS
T ss_pred HHHHHHHHHhccCcccC--ce---EEeE--EEECCCCCEEEEEEEeCC
Confidence 3445555 789999875 22 2345 778777778888887753
No 13
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=33.75 E-value=38 Score=23.56 Aligned_cols=69 Identities=10% Similarity=-0.074 Sum_probs=43.6
Q ss_pred CcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCC-ChHHHHHHHHHHHHHHhCCCceeE
Q 033611 34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHC-SMATVIGLCLRVKLMRSLPPRFKV 112 (115)
Q Consensus 34 ~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~C-p~~~~I~~~v~~~L~~~~~~~~~V 112 (115)
++++..+++++++ +|..|--+.-.|.|++ - ++ |..|. . |++.+- ||+......|...+.+. ++...|
T Consensus 10 ~~~d~~~~~~~~~---~~~~GAvv~F~G~VR~--~--~~-g~~V~-~--L~ye~y~~ma~~~l~~I~~ea~~r-~~~~~v 77 (149)
T 2q5w_E 10 EPIQTEQYREFTI---NEYQGAVVVFTGHVRE--W--TK-GVKTE-Y--LEYEAYIPMAEKKLAQIGDEINEK-WPGTIT 77 (149)
T ss_dssp SCCCCHHHHHHHC---CTTCCEEEEEEEECCS--C--SS-SSCEE-E--EEEEECHHHHHHHHHHHHHHHHHH-STTCEE
T ss_pred CCCCHHHHHHHhc---CCCCcEEEEEEEEECC--C--CC-CCcEE-E--EEEEeCchHHHHHHHHHHHHHHHh-CCCcEE
Confidence 4577778888885 5999999999999998 2 12 22232 3 333344 67777666666666454 344454
Q ss_pred Ee
Q 033611 113 RR 114 (115)
Q Consensus 113 ~v 114 (115)
-|
T Consensus 78 ~v 79 (149)
T 2q5w_E 78 SI 79 (149)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 14
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=28.29 E-value=81 Score=25.03 Aligned_cols=56 Identities=7% Similarity=0.082 Sum_probs=38.4
Q ss_pred CcCCHHHHHHHhcCCCCCCCCCC-ceeccceeeccEEEeCCCcEEEEEEEeCCCCCC-hHHHH
Q 033611 34 EQIDQQEVFDHVRDIKDPEHPYS-LEELKVITEDAIEVDDERSYVRVTFTPTVEHCS-MATVI 94 (115)
Q Consensus 34 ~~it~~~I~~aL~~V~DPEi~~~-IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp-~~~~I 94 (115)
+++|.++|...++.+.+|..+-. -..+.-|.. |++.++ -+|.|+++.|.-+ +...+
T Consensus 96 ~p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~--v~~~d~---~Tv~i~l~~p~~~~~~~~l 153 (520)
T 1xoc_A 96 KELTADDVVFTYSVPLSKDYKGERGSTYEMLKS--VEKKGD---YEVLFKLKYKDGNFYNNAL 153 (520)
T ss_dssp CBCCHHHHHHHHHGGGSTTCCCSCGGGTTTEEE--EEEEET---TEEEEEESSCCTHHHHTHH
T ss_pred CccCHHHHHHHHHHHhCCCCCccccccccccce--EEEccC---CEEEEEeCCCCcHHHHHHh
Confidence 47999999999999999986522 233455667 777554 2567777777666 55444
No 15
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=27.55 E-value=1.2e+02 Score=19.09 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=34.9
Q ss_pred CHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCC-CCChHH--HHHHHHHHHHHHhCCCceeE
Q 033611 37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVE-HCSMAT--VIGLCLRVKLMRSLPPRFKV 112 (115)
Q Consensus 37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p-~Cp~~~--~I~~~v~~~L~~~~~~~~~V 112 (115)
+.++|.++|..+ |+. .++-+| .+-..|..+.+++.+..+ ..++.. .|...++.+|++.++....|
T Consensus 11 ~~~~I~~~l~~~--~gV-~~vh~l--------r~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~v 78 (107)
T 2zzt_A 11 MYDDIFAVLERF--PNV-HNPHRV--------RIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDV 78 (107)
T ss_dssp HHHHHHHHHTTC--SSC-EEEEEE--------EEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHcC--CCc-cccEEE--------EEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 346677777654 332 233333 221122234445444444 445444 89999999997777644433
No 16
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=25.22 E-value=96 Score=21.39 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=43.6
Q ss_pred CcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCC-ChHHHHHHHHHHHHHHhCCCceeE
Q 033611 34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHC-SMATVIGLCLRVKLMRSLPPRFKV 112 (115)
Q Consensus 34 ~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~C-p~~~~I~~~v~~~L~~~~~~~~~V 112 (115)
++++..+++++++ +|..|--+.-.|.|++ -. + +..| ..| ++.+- ||+......|...+.+. ++...|
T Consensus 18 ~~~d~~~~~~~~~---~~~~GAvv~F~G~VR~--~~--~-g~~V-~~L--eye~y~~ma~~~l~~I~~ea~~r-~~~~~v 85 (147)
T 2wp4_A 18 QPLSVDEVLAAVS---GPEQGGIVIFVGNVRD--HN--A-GHDV-TRL--FYEAYPPMVIRTLMSIIGRCEDK-AEGVRV 85 (147)
T ss_dssp SCCCHHHHHHHHC---CTTCCEEEEEEEECCC-------------CEE--EEECCHHHHHHHHHHHHHHHHTS-STTCEE
T ss_pred CCCCHHHHHHHhh---CCCCceEEEEEEEECC--CC--C-CCcE-EEE--EEEeCchHHHHHHHHHHHHHHHh-CCCceE
Confidence 4688888888885 5999999999999998 31 2 2222 233 33444 77777777777766343 444555
Q ss_pred Ee
Q 033611 113 RR 114 (115)
Q Consensus 113 ~v 114 (115)
-|
T Consensus 86 ~i 87 (147)
T 2wp4_A 86 AV 87 (147)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 17
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=22.94 E-value=89 Score=24.74 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.2
Q ss_pred CcCCHHHHHHHhcCCCCCCCCCC-ceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHH
Q 033611 34 EQIDQQEVFDHVRDIKDPEHPYS-LEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVI 94 (115)
Q Consensus 34 ~~it~~~I~~aL~~V~DPEi~~~-IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I 94 (115)
.++|.++|...++.+.+|+.+.. -..+.-|.. |++.++ =+|.|++..|.-++...+
T Consensus 99 ~p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~--v~~~dd---~Tv~i~l~~p~~~~~~~l 155 (509)
T 1uqw_A 99 TDFNAAAVKANLDRASDPANHLKRHNLYKNIAK--TEAIDP---TTVKITLKQPFSAFINIL 155 (509)
T ss_dssp CBCCHHHHHHHHHHHTCGGGCCTTGGGTTTEEE--EEEEET---TEEEEEESSCCTTHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcchhhhcceee--EEEcCC---CEEEEEECCCCHHHHHHH
Confidence 57999999999998889876522 122345666 776554 256677777765555444
No 18
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=21.04 E-value=39 Score=17.12 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.5
Q ss_pred EEeCCCCCCh
Q 033611 81 FTPTVEHCSM 90 (115)
Q Consensus 81 mtlT~p~Cp~ 90 (115)
.|+..||||-
T Consensus 10 ytfrgpgcpt 19 (29)
T 1ic9_A 10 YTFRGPGCPT 19 (29)
T ss_dssp EEEECSCCCC
T ss_pred eeecCCCCCc
Confidence 4667899984
Done!