Query 033615
Match_columns 115
No_of_seqs 176 out of 1123
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.7 9.9E-18 2.1E-22 112.3 8.1 61 1-61 39-99 (100)
2 PF06005 DUF904: Protein of un 95.4 0.33 7.2E-06 30.7 8.7 51 8-63 1-51 (72)
3 COG3074 Uncharacterized protei 92.7 1.7 3.7E-05 27.7 8.7 51 8-63 1-51 (79)
4 PRK15422 septal ring assembly 92.0 2.2 4.8E-05 27.5 8.6 43 8-55 1-43 (79)
5 PRK13169 DNA replication intia 90.7 2.9 6.3E-05 28.6 7.9 49 10-63 7-55 (110)
6 PF06156 DUF972: Protein of un 90.2 3.7 7.9E-05 27.9 8.0 49 10-63 7-55 (107)
7 PF01166 TSC22: TSC-22/dip/bun 87.1 1.9 4.2E-05 26.3 4.4 26 33-58 17-42 (59)
8 KOG4797 Transcriptional regula 85.8 5.2 0.00011 27.5 6.5 45 15-59 45-89 (123)
9 cd07429 Cby_like Chibby, a nuc 85.6 1.9 4.2E-05 29.4 4.4 26 38-63 73-98 (108)
10 PF06698 DUF1192: Protein of u 85.3 1.9 4.1E-05 26.4 3.8 27 1-27 14-40 (59)
11 smart00338 BRLZ basic region l 84.9 6.4 0.00014 23.7 6.9 41 22-66 15-55 (65)
12 KOG0014 MADS box transcription 84.9 0.096 2.1E-06 37.9 -2.5 40 1-40 137-177 (195)
13 PF10504 DUF2452: Protein of u 79.6 17 0.00037 26.4 7.6 43 9-51 28-73 (159)
14 PF00170 bZIP_1: bZIP transcri 77.5 13 0.00028 22.3 7.4 39 22-64 15-53 (64)
15 PF07716 bZIP_2: Basic region 76.3 13 0.00028 21.7 6.8 38 22-63 14-51 (54)
16 PF06156 DUF972: Protein of un 74.9 16 0.00035 24.7 6.0 34 31-64 16-49 (107)
17 KOG0709 CREB/ATF family transc 73.2 3.9 8.4E-05 34.5 3.2 56 7-62 233-311 (472)
18 PRK10884 SH3 domain-containing 71.3 41 0.00089 25.2 8.9 22 40-61 128-149 (206)
19 KOG4797 Transcriptional regula 71.0 9.7 0.00021 26.2 4.2 44 15-59 49-96 (123)
20 PF05529 Bap31: B-cell recepto 63.9 53 0.0011 23.8 8.3 53 10-62 124-186 (192)
21 PF03980 Nnf1: Nnf1 ; InterPr 63.8 34 0.00073 22.6 5.8 38 26-63 69-106 (109)
22 PF14645 Chibby: Chibby family 63.6 15 0.00032 25.2 4.0 27 37-63 71-97 (116)
23 PF06005 DUF904: Protein of un 63.3 35 0.00075 21.4 6.9 39 29-67 10-48 (72)
24 smart00340 HALZ homeobox assoc 61.8 26 0.00057 20.0 4.1 25 40-64 8-32 (44)
25 PRK00888 ftsB cell division pr 61.5 36 0.00078 22.7 5.5 33 32-64 29-61 (105)
26 PF02151 UVR: UvrB/uvrC motif; 61.5 24 0.00051 18.9 4.2 33 12-44 3-35 (36)
27 COG4467 Regulator of replicati 61.4 50 0.0011 22.7 7.2 48 10-62 7-54 (114)
28 PRK13169 DNA replication intia 61.1 46 0.001 22.7 6.0 34 31-64 16-49 (110)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.4 53 0.0011 22.5 8.3 28 34-61 102-129 (132)
30 TIGR02449 conserved hypothetic 56.5 46 0.00099 20.6 8.1 45 12-61 1-45 (65)
31 KOG3119 Basic region leucine z 56.1 47 0.001 25.8 6.1 42 21-66 203-244 (269)
32 PRK13729 conjugal transfer pil 54.1 58 0.0013 27.7 6.7 44 14-62 79-122 (475)
33 PF04880 NUDE_C: NUDE protein, 53.6 38 0.00082 24.8 4.9 43 13-60 2-47 (166)
34 PF15243 ANAPC15: Anaphase-pro 53.5 19 0.00041 23.9 3.0 23 11-33 28-50 (92)
35 PF04849 HAP1_N: HAP1 N-termin 52.3 29 0.00063 27.8 4.4 54 11-64 97-187 (306)
36 KOG1962 B-cell receptor-associ 50.5 1.1E+02 0.0023 23.4 7.0 11 12-22 159-169 (216)
37 PF01093 Clusterin: Clusterin; 50.5 1.4E+02 0.0029 25.2 8.2 60 3-62 1-69 (436)
38 PF12537 DUF3735: Protein of u 48.8 38 0.00082 21.0 3.8 25 10-34 47-71 (72)
39 PF10226 DUF2216: Uncharacteri 48.0 59 0.0013 24.4 5.2 31 30-60 48-78 (195)
40 TIGR02338 gimC_beta prefoldin, 48.0 80 0.0017 20.9 6.5 44 17-61 62-105 (110)
41 KOG0930 Guanine nucleotide exc 47.5 52 0.0011 26.6 5.1 42 6-56 9-50 (395)
42 PF09798 LCD1: DNA damage chec 46.8 1.8E+02 0.0038 25.9 8.7 53 11-63 4-59 (654)
43 PF04977 DivIC: Septum formati 46.8 63 0.0014 19.4 5.5 30 34-63 21-50 (80)
44 PF11365 DUF3166: Protein of u 44.7 72 0.0016 21.3 4.8 31 32-62 10-40 (96)
45 COG2433 Uncharacterized conser 44.6 2E+02 0.0043 25.5 8.5 53 11-63 450-507 (652)
46 PF02183 HALZ: Homeobox associ 44.4 60 0.0013 18.5 5.9 34 30-63 5-38 (45)
47 COG1382 GimC Prefoldin, chaper 43.2 1.1E+02 0.0024 21.2 6.8 40 21-61 69-108 (119)
48 PF11629 Mst1_SARAH: C termina 42.9 43 0.00094 19.7 3.1 26 5-30 5-34 (49)
49 smart00787 Spc7 Spc7 kinetocho 42.8 1.7E+02 0.0037 23.3 8.4 59 4-62 197-257 (312)
50 PHA01750 hypothetical protein 41.5 89 0.0019 19.6 7.1 45 16-60 28-72 (75)
51 TIGR02894 DNA_bind_RsfA transc 41.4 1.4E+02 0.003 21.8 8.6 58 6-63 78-137 (161)
52 KOG0837 Transcriptional activa 40.9 1.5E+02 0.0033 23.4 6.7 51 9-63 200-253 (279)
53 COG4467 Regulator of replicati 40.7 92 0.002 21.4 4.8 31 34-64 19-49 (114)
54 TIGR02209 ftsL_broad cell divi 40.3 89 0.0019 19.3 5.2 32 33-64 27-58 (85)
55 KOG3584 cAMP response element 39.3 81 0.0018 25.4 5.0 43 16-63 296-338 (348)
56 PLN02372 violaxanthin de-epoxi 39.0 2E+02 0.0044 24.3 7.5 28 10-37 378-405 (455)
57 smart00338 BRLZ basic region l 38.9 85 0.0018 18.6 5.2 27 33-59 36-62 (65)
58 PF15254 CCDC14: Coiled-coil d 38.6 1.8E+02 0.0039 26.5 7.5 44 15-63 438-481 (861)
59 PF08317 Spc7: Spc7 kinetochor 38.6 2E+02 0.0043 22.7 8.9 59 4-62 202-262 (325)
60 PF10224 DUF2205: Predicted co 38.5 1.1E+02 0.0023 19.7 5.1 29 35-63 35-63 (80)
61 PF10234 Cluap1: Clusterin-ass 37.9 2E+02 0.0043 22.6 7.2 40 11-51 158-197 (267)
62 PF10018 Med4: Vitamin-D-recep 37.4 1.6E+02 0.0035 21.4 9.0 50 10-61 4-53 (188)
63 PF12548 DUF3740: Sulfatase pr 36.9 68 0.0015 22.9 4.0 35 24-59 101-135 (145)
64 TIGR00012 L29 ribosomal protei 35.0 82 0.0018 18.4 3.6 28 4-31 1-28 (55)
65 smart00030 CLb CLUSTERIN Beta 34.6 2E+02 0.0044 21.8 8.2 29 4-32 8-36 (206)
66 PRK11637 AmiB activator; Provi 33.8 2.6E+02 0.0057 22.8 8.7 8 13-20 49-56 (428)
67 PF06785 UPF0242: Uncharacteri 33.4 2.4E+02 0.0052 23.3 6.9 43 19-62 131-173 (401)
68 PRK09343 prefoldin subunit bet 33.3 1.6E+02 0.0034 20.0 6.8 44 19-63 68-111 (121)
69 COG0165 ArgH Argininosuccinate 33.2 1.5E+02 0.0032 25.2 6.0 38 26-63 106-143 (459)
70 PF09755 DUF2046: Uncharacteri 33.2 2.1E+02 0.0045 23.1 6.5 42 18-60 23-64 (310)
71 PF08781 DP: Transcription fac 32.6 1.8E+02 0.004 20.7 7.8 45 11-57 1-45 (142)
72 TIGR01950 SoxR redox-sensitive 32.2 1.8E+02 0.0038 20.3 5.5 54 7-60 57-110 (142)
73 KOG4343 bZIP transcription fac 31.7 1.8E+02 0.0039 25.5 6.2 44 24-67 293-339 (655)
74 PF07558 Shugoshin_N: Shugoshi 31.5 75 0.0016 18.1 2.9 30 31-60 15-44 (46)
75 KOG2417 Predicted G-protein co 31.5 3.1E+02 0.0068 22.9 8.7 32 8-39 183-214 (462)
76 PF04999 FtsL: Cell division p 31.4 1.4E+02 0.0031 19.0 5.4 33 32-64 37-69 (97)
77 PRK11637 AmiB activator; Provi 30.3 3E+02 0.0066 22.4 9.1 14 14-27 78-91 (428)
78 KOG0804 Cytoplasmic Zn-finger 30.0 2.3E+02 0.0051 24.2 6.5 36 23-58 375-410 (493)
79 PF14915 CCDC144C: CCDC144C pr 28.9 3.1E+02 0.0067 22.1 7.1 50 15-64 232-291 (305)
80 PF08946 Osmo_CC: Osmosensory 28.6 1.3E+02 0.0027 17.5 4.1 18 34-51 23-40 (46)
81 cd01109 HTH_YyaN Helix-Turn-He 28.1 1.8E+02 0.0039 19.1 6.5 27 33-59 82-108 (113)
82 PF12718 Tropomyosin_1: Tropom 27.4 2.2E+02 0.0048 19.9 8.2 17 14-30 45-61 (143)
83 PF03250 Tropomodulin: Tropomo 26.1 43 0.00092 24.1 1.4 17 5-21 21-37 (147)
84 COG4026 Uncharacterized protei 25.9 3.3E+02 0.007 21.3 9.3 24 37-60 135-158 (290)
85 PRK09413 IS2 repressor TnpA; R 25.9 2.1E+02 0.0045 19.1 7.1 28 34-61 75-102 (121)
86 PF15619 Lebercilin: Ciliary p 25.8 2.5E+02 0.0055 20.7 5.6 34 26-59 8-41 (194)
87 COG2433 Uncharacterized conser 25.6 3.2E+02 0.007 24.2 6.8 19 11-29 422-440 (652)
88 PF14775 NYD-SP28_assoc: Sperm 25.3 1.6E+02 0.0035 17.6 5.1 20 41-60 37-56 (60)
89 cd04769 HTH_MerR2 Helix-Turn-H 25.3 2.1E+02 0.0045 18.9 6.0 28 33-60 82-109 (116)
90 PF05812 Herpes_BLRF2: Herpesv 24.8 1.4E+02 0.003 20.7 3.7 24 39-62 5-28 (118)
91 PHA03155 hypothetical protein; 24.6 1.3E+02 0.0029 20.7 3.6 23 39-61 10-32 (115)
92 KOG3759 Uncharacterized RUN do 24.1 3.9E+02 0.0084 23.2 6.9 21 4-27 198-218 (621)
93 PF00831 Ribosomal_L29: Riboso 23.6 66 0.0014 19.0 1.8 27 5-31 4-30 (58)
94 PF01763 Herpes_UL6: Herpesvir 23.6 3.6E+02 0.0078 23.5 6.8 38 27-64 360-397 (557)
95 KOG4005 Transcription factor X 23.5 3.7E+02 0.008 21.2 6.7 28 5-33 61-90 (292)
96 PF15058 Speriolin_N: Sperioli 23.3 2.2E+02 0.0048 21.5 4.8 30 34-64 16-45 (200)
97 PHA03162 hypothetical protein; 23.1 1.4E+02 0.0031 21.1 3.6 23 39-61 15-37 (135)
98 cd00890 Prefoldin Prefoldin is 22.8 2.3E+02 0.005 18.5 6.0 42 18-60 83-124 (129)
99 PRK00306 50S ribosomal protein 22.5 1.5E+02 0.0032 17.9 3.3 28 4-31 5-32 (66)
100 cd04787 HTH_HMRTR_unk Helix-Tu 22.2 2.6E+02 0.0057 18.9 6.4 53 7-60 57-109 (133)
101 PF13805 Pil1: Eisosome compon 22.1 2E+02 0.0043 22.7 4.6 26 19-45 135-160 (271)
102 cd00632 Prefoldin_beta Prefold 21.9 2.4E+02 0.0051 18.3 6.9 44 17-61 58-101 (105)
103 TIGR02449 conserved hypothetic 21.8 2.1E+02 0.0045 17.7 6.0 33 34-66 4-36 (65)
104 PRK13923 putative spore coat p 21.6 3.3E+02 0.0073 20.0 6.2 24 37-60 111-134 (170)
105 PF12329 TMF_DNA_bd: TATA elem 21.5 2.2E+02 0.0047 17.7 5.8 33 30-62 26-58 (74)
106 COG5420 Uncharacterized conser 21.5 2E+02 0.0042 18.0 3.5 28 33-60 2-29 (71)
107 PF06937 EURL: EURL protein; 21.3 2E+02 0.0044 22.8 4.5 29 3-31 214-242 (285)
108 PF08687 ASD2: Apx/Shroom doma 21.1 3.9E+02 0.0085 21.0 6.0 41 18-62 78-118 (264)
109 PF15456 Uds1: Up-regulated Du 21.1 2E+02 0.0044 19.8 4.0 34 28-61 12-46 (124)
110 PF07498 Rho_N: Rho terminatio 20.9 11 0.00023 21.2 -2.1 32 4-36 1-32 (43)
111 PF09278 MerR-DNA-bind: MerR, 20.5 1.9E+02 0.0041 16.7 5.3 19 33-51 39-57 (65)
112 PF07889 DUF1664: Protein of u 20.5 3.1E+02 0.0066 19.1 8.0 49 14-63 46-94 (126)
113 PRK03947 prefoldin subunit alp 20.4 2.9E+02 0.0062 18.7 5.6 46 17-63 89-134 (140)
114 TIGR01069 mutS2 MutS2 family p 20.2 6.4E+02 0.014 22.7 8.5 26 12-37 540-565 (771)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.74 E-value=9.9e-18 Score=112.31 Aligned_cols=61 Identities=46% Similarity=0.696 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 1 MGEQLYGLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 1 ~GEdL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+||||++||++||..||++|+.||++||+||+++|.++|..+++|++.+.++|..|+.+++
T Consensus 39 ~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 39 MGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred ccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999999999999999999999998874
No 2
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.37 E-value=0.33 Score=30.74 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 8 LSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 8 Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+|++-|..||..+..++..|..=| .+++.|+.+...+.++|..|.......
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq-----~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQ-----MENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578899999999999999997655 466788888777777777777665544
No 3
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.65 E-value=1.7 Score=27.65 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 8 LSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 8 Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+|++=|..||..+..|+..| .++.-+|+.||.|...|..+-..++...+..
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 57888999999999999987 4666788899988887777766665554444
No 4
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.00 E-value=2.2 Score=27.55 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 8 LSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLE 55 (115)
Q Consensus 8 Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~ 55 (115)
+|++=|.+||..+..|+..|- ++.-+|+.+|.|...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999985 5556778888887777776555
No 5
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.71 E-value=2.9 Score=28.58 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
++-+.+||+++..-+..|..-|.++. .+-.....|.-||..|+..+...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~-----el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLA-----ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999998888887776543 45556667778888888877654
No 6
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.23 E-value=3.7 Score=27.85 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
++.|..||++|..-+..|..-|.++. .+-.....|.-||..|+..+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~-----~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQ-----ELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999888877777665443 44455566666777777766554
No 7
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.09 E-value=1.9 Score=26.32 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNK 58 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~ 58 (115)
+++.++|..|..+...|+.||..|+.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666676777777766653
No 8
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=85.76 E-value=5.2 Score=27.53 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 15 NLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 15 ~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
.+.+.+|.|..-|...-+=-..++++.||.+++.|.+.|..|..+
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777766655443333566666666666666666666544
No 9
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=85.63 E-value=1.9 Score=29.42 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 38 EIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 38 ~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.+..+|+|...|+|||+.|+.|++..
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999998754
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.29 E-value=1.9 Score=26.37 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=18.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 033615 1 MGEQLYGLSVKDLQNLENQLEMTLRGV 27 (115)
Q Consensus 1 ~GEdL~~Ls~~eL~~LE~~Le~sl~~I 27 (115)
.|+||+.||+.||..==..|+.=+.++
T Consensus 14 ig~dLs~lSv~EL~~RIa~L~aEI~R~ 40 (59)
T PF06698_consen 14 IGEDLSLLSVEELEERIALLEAEIARL 40 (59)
T ss_pred cCCCchhcCHHHHHHHHHHHHHHHHHH
Confidence 489999999999875444444333333
No 11
>smart00338 BRLZ basic region leucin zipper.
Probab=84.94 E-value=6.4 Score=23.69 Aligned_cols=41 Identities=32% Similarity=0.442 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
.|..+-|.||...+ ..|..++..|..+|..|..++.....+
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888886654 588999999999999999988776544
No 12
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=84.89 E-value=0.096 Score=37.89 Aligned_cols=40 Identities=40% Similarity=0.504 Sum_probs=36.1
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 1 MGEQLYGLSV-KDLQNLENQLEMTLRGVRLKKEQILTDEIQ 40 (115)
Q Consensus 1 ~GEdL~~Ls~-~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~ 40 (115)
+|+++.++++ .+|..+|.+++.++..+|..+...+..++.
T Consensus 137 ~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (195)
T KOG0014|consen 137 TGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNF 177 (195)
T ss_pred hccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhh
Confidence 4789999999 999999999999999999999988877664
No 13
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=79.64 E-value=17 Score=26.45 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 033615 9 SVKDLQNLENQLEMTLRGVRLK---KEQILTDEIQELNRKGHLIQL 51 (115)
Q Consensus 9 s~~eL~~LE~~Le~sl~~IR~r---K~~ll~~~i~~lkkk~~~l~e 51 (115)
+..||..|=++++.|..-||++ |-.+|.+||..|++.-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999987 667778888777766554444
No 14
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.50 E-value=13 Score=22.29 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
.|-.+.|.||...+ ..|..++..|..+|..|...+....
T Consensus 15 ~AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 15 EAARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888887655 5888888888888888888776654
No 15
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=76.30 E-value=13 Score=21.66 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.|..+-|.||-.. +..+..++..|..+|..|..++...
T Consensus 14 ~AA~r~R~rkk~~----~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 14 EAARRSRQRKKQR----EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777544 3578888999999999998887654
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.88 E-value=16 Score=24.70 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 31 KEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 31 K~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
....|..++..||+.+..+.+||..|+.+-+...
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999998776654
No 17
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=73.21 E-value=3.9 Score=34.45 Aligned_cols=56 Identities=34% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-------------HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKDLQNLENQLEMTLRGVRLK-------------KEQ----------ILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 7 ~Ls~~eL~~LE~~Le~sl~~IR~r-------------K~~----------ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+.++.+..-|=+.=|..|++||.+ |.+ ....+-..|++|+..|+..|..|..+|..
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 344555555666667788888754 111 11223355667777777777777666544
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.26 E-value=41 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033615 40 QELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~ 61 (115)
....+....|.++|..|..++.
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555443
No 19
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=71.04 E-value=9.7 Score=26.23 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 15 NLENQLEMTLR----GVRLKKEQILTDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 15 ~LE~~Le~sl~----~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
.+|+.++---. -||.- .+++.++|..|..+...|++||..|+.-
T Consensus 49 KIeQAMDLVKtHLmfAVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREE-VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666554433 35553 4689999999999999999999988753
No 20
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.90 E-value=53 Score=23.76 Aligned_cols=53 Identities=25% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLK----------KEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~r----------K~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+.+|..+|..++.+-++.... +..-..++|+.++++....+.+...|..+.+.
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777776665422 33455677777777777777777777766544
No 21
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=63.77 E-value=34 Score=22.55 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 26 GVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 26 ~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
-||+.=......+++.|+.+...+..+|..|...+...
T Consensus 69 ~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 69 DIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666677888999999999999999999888654
No 22
>PF14645 Chibby: Chibby family
Probab=63.62 E-value=15 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 37 DEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.....++++.+.|.|||+.|+.+++..
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999999999887643
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.29 E-value=35 Score=21.43 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033615 29 LKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQEN 67 (115)
Q Consensus 29 ~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~~ 67 (115)
..|.+-..+.|..|+.++..|.++|..|...-......+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 357777888899999999999999999987766655444
No 24
>smart00340 HALZ homeobox associated leucin zipper.
Probab=61.82 E-value=26 Score=20.05 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 40 QELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
+.||+=-..|.++|++|.+++++..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778889999999999998764
No 25
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.52 E-value=36 Score=22.75 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 32 EQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 32 ~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
..-+..++..++++...+..+|..|..++....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556777778888888888888888776653
No 26
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=61.51 E-value=24 Score=18.91 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 12 DLQNLENQLEMTLRGVRLKKEQILTDEIQELNR 44 (115)
Q Consensus 12 eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkk 44 (115)
.+..|+..+..++..-+--+.-.+.++|..+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467888888888888888888788777777665
No 27
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=61.37 E-value=50 Score=22.66 Aligned_cols=48 Identities=27% Similarity=0.352 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
|+.+..||++|-.-++.|-.-|.++- .+-.....|.-||..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~-----~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLG-----SLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHhhHHHHHHHhCC
Confidence 56788899998877766666554432 2222333444555555555543
No 28
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.14 E-value=46 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 31 KEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 31 K~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
....+..++..||+.+..+.+||..|+.+-+...
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999988765543
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.36 E-value=53 Score=22.54 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
.|..+|..++++...|...|+.|..+|+
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777788888888777764
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.48 E-value=46 Score=20.64 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 12 DLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 12 eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+|..||..++.=+.....=|. +-..|+..+..+..++..|..+.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~-----EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKS-----ENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888887776554333 333455555556666666655544
No 31
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.13 E-value=47 Score=25.78 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 21 EMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 21 e~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
-.|+++=|.+..+.. +.++.|+..|..+|..|+.+++.+..+
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666665554433 577889999999999999999877654
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.15 E-value=58 Score=27.71 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 14 QNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 14 ~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
..||++|+. .|. -.++|..+...++.|++.++.++..|..++..
T Consensus 79 sELEKqLaa----Lrq-Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 79 AQMQKQYEE----IRR-ELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHH----HHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344555544 432 22466677778899999999999999998854
No 33
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.62 E-value=38 Score=24.76 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 033615 13 LQNLENQLEMTLRGVRLKKEQILTDEI---QELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 13 L~~LE~~Le~sl~~IR~rK~~ll~~~i---~~lkkk~~~l~een~~L~~~l 60 (115)
|..+|..|..|+.+- =+|..+| +.|+.++..|.+|-+.|+.++
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888753 2444444 344455555666666666555
No 34
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=53.52 E-value=19 Score=23.88 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLKKEQ 33 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~rK~~ 33 (115)
.+|.++|++-+..|..|+.+=..
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999876543
No 35
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=52.34 E-value=29 Score=27.81 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLK------KEQILT-------------------------------DEIQELNRKGHLIQLEN 53 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~r------K~~ll~-------------------------------~~i~~lkkk~~~l~een 53 (115)
.....||.+|..+...|..- |+.++. -+++.|++|.+.|+++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 44566888888888877754 444421 12588999999999999
Q ss_pred HHHHHHHHHHH
Q 033615 54 LELNKKLNLIR 64 (115)
Q Consensus 54 ~~L~~~l~~~~ 64 (115)
..|+.+.....
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99998775543
No 36
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.51 E-value=1.1e+02 Score=23.43 Aligned_cols=11 Identities=55% Similarity=0.824 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 033615 12 DLQNLENQLEM 22 (115)
Q Consensus 12 eL~~LE~~Le~ 22 (115)
|+..|+..++.
T Consensus 159 ~~~kL~~el~~ 169 (216)
T KOG1962|consen 159 DLEKLETELEK 169 (216)
T ss_pred hHHHHHHHHHH
Confidence 34444444433
No 37
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=50.46 E-value=1.4e+02 Score=25.23 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 3 EQLYGLSVKDLQNLENQLEMTLRGVRLKKE---------QILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 3 EdL~~Ls~~eL~~LE~~Le~sl~~IR~rK~---------~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
++|..+|..--..+..++++||.-|..-|. +-|+..++..+++.+.....-+....+|.+
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee 69 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEE 69 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888999999988865542 334444555554433333333344444543
No 38
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=48.78 E-value=38 Score=20.99 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQI 34 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~l 34 (115)
-.++..+|+.|......+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999988654
No 39
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=47.99 E-value=59 Score=24.43 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 30 KKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 30 rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
|+-+....+|..||.-...|+++|..|+.-+
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667778888888888889998887544
No 40
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.96 E-value=80 Score=20.90 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 17 ENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 17 E~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
++..+.++..|..|+. .+...|..+.++...+.+.-..+...+.
T Consensus 62 ~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 62 KTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred eecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666654 3355666666666666555555555443
No 41
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.49 E-value=52 Score=26.60 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 6 YGLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLEL 56 (115)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 56 (115)
.+||..|-+. |.+||.||.+++ ++|+.||..+....++-..|
T Consensus 9 ~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 9 NDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 4566666554 457999998887 57888888877766655444
No 42
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=46.82 E-value=1.8e+02 Score=25.89 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLKKEQI---LTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~rK~~l---l~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+.|..|+++-+.=+...+.++..+ ..++++.||.-+..|++|.+.|..+....
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998888887764 46788999999999999999998776544
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.78 E-value=63 Score=19.42 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
-+..++..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567788888888888888888887765
No 44
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.73 E-value=72 Score=21.28 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 32 EQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 32 ~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
-|+..++..-++++...+.++|..|..++..
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888999999999999999888754
No 45
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.55 E-value=2e+02 Score=25.48 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRL-----KKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~-----rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+++..||.+|+..-++++. |+.+.+...|..|+++...-...-..|..++...
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888777777663 4555667777777777666566666666666544
No 46
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.44 E-value=60 Score=18.48 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 30 KKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 30 rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+-..++....+.|+.....|..+|..|+.++...
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788889999999999999998887654
No 47
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=43.17 E-value=1.1e+02 Score=21.18 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 21 EMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 21 e~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+.++..+..|+ +.+.-+|.+|++.++.+.++-..|..+|.
T Consensus 69 ~~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 35566677777777777777766666654
No 48
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=42.90 E-value=43 Score=19.68 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=13.9
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHHHHH
Q 033615 5 LYGLSVKDLQN----LENQLEMTLRGVRLK 30 (115)
Q Consensus 5 L~~Ls~~eL~~----LE~~Le~sl~~IR~r 30 (115)
|..+|++||++ |...+|.-+..+|.|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55678888764 444444444444443
No 49
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.80 E-value=1.7e+02 Score=23.28 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQIL--TDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll--~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+++.|..++|..+-..|..-...|..++.++- ..+...++.++....+.-..+...+.+
T Consensus 197 e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 197 ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888887777777666543 445555555555555555555555544
No 50
>PHA01750 hypothetical protein
Probab=41.54 E-value=89 Score=19.64 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 16 LENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 16 LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
+-+.|.+|++.|=..--.-+..+|+.++.|..++++.-..+.+++
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 445566666666555555556677777777666666666665554
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.35 E-value=1.4e+02 Score=21.80 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 6 YGLSVKDLQNLENQLEMTLRGVRLK--KEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~sl~~IR~r--K~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.++++++....=+++.........- -.+-+..++..++++...|..++..|..++...
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777666656666542222211 112445666777777777777777777665544
No 52
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=40.85 E-value=1.5e+02 Score=23.42 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=34.1
Q ss_pred CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 9 SVKDLQNLENQ---LEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 9 s~~eL~~LE~~---Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
...|+..||+. =..+..+-|.|| ++.|..|++|+..+.-.|..|...+...
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rk----LdrisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRK----LDRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 34567777762 223455555555 4677899999999998888877665443
No 53
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.72 E-value=92 Score=21.40 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
.+..+|..+|+....+.+||..|+-+.....
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 3467899999999999999999987765543
No 54
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.31 E-value=89 Score=19.26 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
..+..++..++++...++.+|..|..++....
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566788889999999999999998876643
No 55
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=39.27 E-value=81 Score=25.43 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 16 LENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 16 LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
|=++=|. .+.-|.||.+. |+-|..++.-|+..|+.|..+|...
T Consensus 296 LmKNREA-ARECRRKKKEY----VKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 296 LMKNREA-ARECRRKKKEY----VKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHhhHHH-HHHHHHhHhHH----HHHHHhHHHHHhcccHHHHHHHHHH
Confidence 3344444 44455555444 4578888999999999998877654
No 56
>PLN02372 violaxanthin de-epoxidase
Probab=38.98 E-value=2e+02 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTD 37 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~ 37 (115)
++|..++|++++.-+++|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999898888877666654
No 57
>smart00338 BRLZ basic region leucin zipper.
Probab=38.87 E-value=85 Score=18.61 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
+.|..+...|+.++..|..++..|...
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666665555443
No 58
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.58 E-value=1.8e+02 Score=26.54 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 15 NLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 15 ~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.|+.||..+++.. +++...-++|-|-...+.+||+.|...+.+.
T Consensus 438 ~Lq~ql~es~k~~-----e~lq~kneellk~~e~q~~Enk~~~~~~~ek 481 (861)
T PF15254_consen 438 SLQNQLQESLKSQ-----ELLQSKNEELLKVIENQKEENKRLRKMFQEK 481 (861)
T ss_pred HHHHHHHHHHHhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777766543 3444455566666777778888877776554
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.57 E-value=2e+02 Score=22.75 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQIL--TDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll--~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+++.++..+|..|-..|...-..|..+|..+- ..+...++.++..+.++-..+...+.+
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999988888888887776643 455555555555555555555555544
No 60
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=38.48 E-value=1.1e+02 Score=19.70 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 35 LTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 35 l~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
|.++|+..+.....|..+|..|..-|...
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777888888888777544
No 61
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.93 E-value=2e+02 Score=22.61 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQL 51 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~e 51 (115)
-|+..+|+.|..++..++..-.+ +..++..+..-+..|..
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~~~-~~~~l~~l~~de~~Le~ 197 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQLQQ-TQQQLNNLASDEANLEA 197 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 36778999999999988875432 23344444444444433
No 62
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.36 E-value=1.6e+02 Score=21.37 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+.+|......|..+|..+.. .+-+..+|..|++....+.+.-+.+...|.
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~--hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~ 53 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQE--HQENQARIQQLRAEIEELDEQIRDILKQLK 53 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998844 334455666666666655555555544443
No 63
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=36.87 E-value=68 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 24 LRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 24 l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
++.=|.-|. -+..+|+.|+.|.+.|.+.-..|+.+
T Consensus 101 ~~aWk~hr~-~ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 101 PKAWKDHRL-HIDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444 34679999999999999999988764
No 64
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=35.03 E-value=82 Score=18.43 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKK 31 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK 31 (115)
||-.+|.+||...-..+...|-..|..+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888887777777777777543
No 65
>smart00030 CLb CLUSTERIN Beta chain.
Probab=34.56 E-value=2e+02 Score=21.76 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKE 32 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~ 32 (115)
+|..+|..-=..+.+++++||.-|..-|+
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~ 36 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIKT 36 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667789999999999876653
No 66
>PRK11637 AmiB activator; Provisional
Probab=33.78 E-value=2.6e+02 Score=22.77 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 033615 13 LQNLENQL 20 (115)
Q Consensus 13 L~~LE~~L 20 (115)
|.++++++
T Consensus 49 l~~l~~qi 56 (428)
T PRK11637 49 LKSIQQDI 56 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 67
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.36 E-value=2.4e+02 Score=23.28 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 19 QLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 19 ~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+||..+.+.+.++.+ +.-+++.+.+..+..++++..|.+++++
T Consensus 131 ~LE~li~~~~EEn~~-lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 131 HLEGLIRHLREENQC-LQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 444455555554433 2335555555555555555555555543
No 68
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.30 E-value=1.6e+02 Score=20.02 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 19 QLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 19 ~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
..+.+...|..|+ +.+...|..+.++...+.+.-..+...+...
T Consensus 68 d~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 68 DKTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665555 3555677777777777776666666666543
No 69
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=33.21 E-value=1.5e+02 Score=25.19 Aligned_cols=38 Identities=24% Similarity=-0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 26 GVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 26 ~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
-=|+|=+|+-..-.--+|++...+.+....|+.-+...
T Consensus 106 tgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~ 143 (459)
T COG0165 106 TGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDL 143 (459)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888887777788888888999998888877554
No 70
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.19 E-value=2.1e+02 Score=23.09 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 18 NQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 18 ~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
.+|...+..++. +..++..+++..+.+.+.|.++|+.|+..-
T Consensus 23 ~~l~~~~~sL~q-en~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 23 EQLRKRIESLQQ-ENRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566665 567777788888999999999998887643
No 71
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=32.62 E-value=1.8e+02 Score=20.66 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELN 57 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~ 57 (115)
.|...||..-.....+|+.++.++- ++.....-.++|.+.|+.+.
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~Lq--EL~~Q~va~knLv~RN~~~~ 45 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQ--ELILQQVAFKNLVQRNRQLE 45 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 3678899999999999998887643 22222233456666666554
No 72
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=32.21 E-value=1.8e+02 Score=20.30 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 7 ~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
++|++++..+=..+...-...-..-..++.+++..+.++...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776654432211111111123555556666666666666666665444
No 73
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=31.68 E-value=1.8e+02 Score=25.50 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033615 24 LRGVRLKKEQI---LTDEIQELNRKGHLIQLENLELNKKLNLIRQEN 67 (115)
Q Consensus 24 l~~IR~rK~~l---l~~~i~~lkkk~~~l~een~~L~~~l~~~~~~~ 67 (115)
...-|.||.+. |...+..+-+....|..||..|+++|+....++
T Consensus 293 A~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 293 ACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34455666554 456777777778888999999999988765443
No 74
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=31.52 E-value=75 Score=18.08 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 31 KEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 31 K~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
....+.-.|..+.++...|..+|..|+..+
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344556677788888888888888887654
No 75
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=31.46 E-value=3.1e+02 Score=22.95 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 8 LSVKDLQNLENQLEMTLRGVRLKKEQILTDEI 39 (115)
Q Consensus 8 Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i 39 (115)
.+=.|..+||++|-.+..-|-+||.+..+.+.
T Consensus 183 Vee~di~~lErrL~qtmdmiisKKkk~a~~~l 214 (462)
T KOG2417|consen 183 VEETDIIQLERRLAQTMDMIISKKKKMAMAQL 214 (462)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468899999999999999999999888775
No 76
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.43 E-value=1.4e+02 Score=18.97 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 32 EQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 32 ~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
...+..++..+++....+.++|..|.-+.....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566789999999999999999988776543
No 77
>PRK11637 AmiB activator; Provisional
Probab=30.26 E-value=3e+02 Score=22.40 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 033615 14 QNLENQLEMTLRGV 27 (115)
Q Consensus 14 ~~LE~~Le~sl~~I 27 (115)
..|+.+|...-..|
T Consensus 78 ~~l~~qi~~~~~~i 91 (428)
T PRK11637 78 KKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.01 E-value=2.3e+02 Score=24.17 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 23 TLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNK 58 (115)
Q Consensus 23 sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~ 58 (115)
+.++|=.+|.+-+.+.++.+.+..+.+.|+|+.|..
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777788888888888888888887764
No 79
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=28.88 E-value=3.1e+02 Score=22.07 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 15 NLENQLEMTLRGVRLKKEQILTDE--I--------QELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 15 ~LE~~Le~sl~~IR~rK~~ll~~~--i--------~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
-|.+||+.|-+++-.+..-++.-| . ....+.+..|++.|+.|..++....
T Consensus 232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 478999999999877653333222 2 3445566678889999988876654
No 80
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=28.59 E-value=1.3e+02 Score=17.48 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQL 51 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~e 51 (115)
=+..+|..|++|...|..
T Consensus 23 did~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 23 DIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444443
No 81
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.11 E-value=1.8e+02 Score=19.06 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
.++.+++..+..+...+...-..|..+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYK 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444433
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.40 E-value=2.2e+02 Score=19.91 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033615 14 QNLENQLEMTLRGVRLK 30 (115)
Q Consensus 14 ~~LE~~Le~sl~~IR~r 30 (115)
..||.+|+..-..+..-
T Consensus 45 ~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 45 QQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 83
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=26.13 E-value=43 Score=24.11 Aligned_cols=17 Identities=53% Similarity=0.712 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHH
Q 033615 5 LYGLSVKDLQNLENQLE 21 (115)
Q Consensus 5 L~~Ls~~eL~~LE~~Le 21 (115)
|..||.+||.+|+..|+
T Consensus 21 L~~LS~EEL~~L~~el~ 37 (147)
T PF03250_consen 21 LAKLSPEELEELENELE 37 (147)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 57899999999998774
No 84
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.91 E-value=3.3e+02 Score=21.34 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 37 DEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l 60 (115)
+....+|.|...+..++..|...+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555444444444444433
No 85
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.88 E-value=2.1e+02 Score=19.09 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
-...++..|+++...|..|+..|.+...
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888876654
No 86
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.83 E-value=2.5e+02 Score=20.74 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 26 GVRLKKEQILTDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 26 ~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
..|.-|..-+.+++..++.+...+..||..|...
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778899999999999999999988653
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.63 E-value=3.2e+02 Score=24.23 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRL 29 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~ 29 (115)
+++..++..++.==..++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~ 440 (652)
T COG2433 422 KRIKKLEETVERLEEENSE 440 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 88
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=25.28 E-value=1.6e+02 Score=17.65 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033615 41 ELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l 60 (115)
.+-.....|..+|..|+..+
T Consensus 37 ~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444577888999888765
No 89
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.28 E-value=2.1e+02 Score=18.89 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
.++.+++..+.++.+.+...-..|...+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665555555554443
No 90
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=24.84 E-value=1.4e+02 Score=20.69 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 39 IQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
++.|-.+...|+-||+.|.+++..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467778888899999999998854
No 91
>PHA03155 hypothetical protein; Provisional
Probab=24.57 E-value=1.3e+02 Score=20.70 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 39 IQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~ 61 (115)
++.|.++...|+-||+.|.+++.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777778888888887773
No 92
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=24.12 E-value=3.9e+02 Score=23.17 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGV 27 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~I 27 (115)
||+.||-+||+ +|++.|++.+
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~ 218 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQL 218 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHH
Confidence 57788888765 6899999875
No 93
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=23.65 E-value=66 Score=19.01 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033615 5 LYGLSVKDLQNLENQLEMTLRGVRLKK 31 (115)
Q Consensus 5 L~~Ls~~eL~~LE~~Le~sl~~IR~rK 31 (115)
|-.+|.+||...-..+...|-..|..+
T Consensus 4 lr~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 4 LRELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 94
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=23.62 E-value=3.6e+02 Score=23.51 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 27 VRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 27 IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
|..-=.+.|.+||+++-+.+..|.++|..+..++....
T Consensus 360 v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e 397 (557)
T PF01763_consen 360 VSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELE 397 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667889999999999999999999998887664
No 95
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=23.48 E-value=3.7e+02 Score=21.16 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHHH--HHHHHHHHHHH
Q 033615 5 LYGLSVKDLQNLENQLEM--TLRGVRLKKEQ 33 (115)
Q Consensus 5 L~~Ls~~eL~~LE~~Le~--sl~~IR~rK~~ 33 (115)
|+.||.+|=.. -+.|.+ |...-|.||..
T Consensus 61 L~HLS~EEK~~-RrKLKNRVAAQtaRDrKKa 90 (292)
T KOG4005|consen 61 LDHLSWEEKVQ-RRKLKNRVAAQTARDRKKA 90 (292)
T ss_pred hcccCHHHHHH-HHHHHHHHHHhhhhhHHHH
Confidence 66777765322 222222 33445777644
No 96
>PF15058 Speriolin_N: Speriolin N terminus
Probab=23.28 E-value=2.2e+02 Score=21.50 Aligned_cols=30 Identities=30% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
-++.+-++|||.++ |..||..|+..+.+..
T Consensus 16 rLv~ENeeLKKlVr-LirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 16 RLVRENEELKKLVR-LIRENHELKSALGEAC 45 (200)
T ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 34467788888887 4566777877765543
No 97
>PHA03162 hypothetical protein; Provisional
Probab=23.12 E-value=1.4e+02 Score=21.10 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 39 IQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~ 61 (115)
++.|-.+...|+-||+.|.+++.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888889999988874
No 98
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.81 E-value=2.3e+02 Score=18.52 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 18 NQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 18 ~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
..++.|...+..|+ ..+..+++.+.+....+..+-..+...+
T Consensus 83 ~~~~eA~~~l~~r~-~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 83 KSLEEAIEFLKKRL-ETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444 3455566666666666666555555544
No 99
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.54 E-value=1.5e+02 Score=17.91 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKK 31 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK 31 (115)
||-.+|.+||...-..+..-|-..|..+
T Consensus 5 elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 5 ELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888877777554
No 100
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=22.16 E-value=2.6e+02 Score=18.92 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 7 ~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
++|++|+..+=.....+-... ..-..++..++..++++...+...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777766533222111111 11134666777777777777766666665554
No 101
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.07 E-value=2e+02 Score=22.69 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 19 QLEMTLRGVRLKKEQILTDEIQELNRK 45 (115)
Q Consensus 19 ~Le~sl~~IR~rK~~ll~~~i~~lkkk 45 (115)
..|.+|.-+|.+|..+ .++|..++.|
T Consensus 135 ~~E~sl~p~R~~r~~l-~d~I~kLk~k 160 (271)
T PF13805_consen 135 NREESLQPSRDRRRKL-QDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHhHHHHHhHHH-HHHHHHHHhc
Confidence 3456677788888755 5788888865
No 102
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.88 E-value=2.4e+02 Score=18.32 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 17 ENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 17 E~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+...+.+...+..++. .+...|..+.++...+..+-..+..++.
T Consensus 58 ~~~~~ea~~~Le~~~e-~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 58 KQEKEEARTELKERLE-TIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred hccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555443 4445555666666666665555555554
No 103
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.83 E-value=2.1e+02 Score=17.67 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
-+..+|+.|=.....|..+|..|+.+......+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777888889999988887665443
No 104
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=21.62 E-value=3.3e+02 Score=19.96 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 37 DEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l 60 (115)
++|..++++...|..++..|..+.
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 105
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.53 E-value=2.2e+02 Score=17.72 Aligned_cols=33 Identities=36% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 30 KKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 30 rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
++..-..+.|..|+.++..+......|..+++.
T Consensus 26 k~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 26 KKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666555544
No 106
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.48 E-value=2e+02 Score=17.98 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
++.+..++.+++|++.|+-........+
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm~L 29 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKMEL 29 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 4566778888888888776555444333
No 107
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=21.35 E-value=2e+02 Score=22.82 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033615 3 EQLYGLSVKDLQNLENQLEMTLRGVRLKK 31 (115)
Q Consensus 3 EdL~~Ls~~eL~~LE~~Le~sl~~IR~rK 31 (115)
|.|.+|+++||.+|=..|...+..|-.-=
T Consensus 214 EeL~~Mt~~EL~qL~~~L~~qIq~vfeeL 242 (285)
T PF06937_consen 214 EELNSMTLDELKQLNEKLLQQIQDVFEEL 242 (285)
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999888877666555433
No 108
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=21.12 E-value=3.9e+02 Score=20.96 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 18 NQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 18 ~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
.........|..+|.+++. .+.+|...|.++...|...+..
T Consensus 78 ~~~~e~~~~l~~Kk~eLi~----~l~~kl~~L~~eqe~l~ee~~~ 118 (264)
T PF08687_consen 78 DSDDENDNDLNAKKVELIE----SLSKKLEVLQEEQEALQEEIQA 118 (264)
T ss_dssp --------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678889988874 7888888888888888776644
No 109
>PF15456 Uds1: Up-regulated During Septation
Probab=21.08 E-value=2e+02 Score=19.80 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 28 RLKKEQIL-TDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 28 R~rK~~ll-~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
-+..++++ .++++.++|..+.|...-..++.++.
T Consensus 12 ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 12 DSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 55666666666666666666666554
No 110
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=20.85 E-value=11 Score=21.19 Aligned_cols=32 Identities=13% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQILT 36 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~ 36 (115)
||..+++.||..+=+.+... ..-+.||.+++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~-~~~~~~K~eLI~ 32 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIE-GYSKMRKQELIF 32 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-T-TGCCS-HHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCC-CCCcCCHHHHHH
Confidence 46778999999888877653 233556777764
No 111
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.51 E-value=1.9e+02 Score=16.66 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQL 51 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~e 51 (115)
.++..+++.+.++...+..
T Consensus 39 ~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555444443
No 112
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.46 E-value=3.1e+02 Score=19.07 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 14 QNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 14 ~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
-.+-++|+.--..|++.|.|+. .+|+.+-.|.....+..+....++.+.
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLs-qRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLS-QRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999998876 688888888887777777777666554
No 113
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.43 E-value=2.9e+02 Score=18.74 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 17 ENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 17 E~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
|..++.|+.-+..|+. .+...++.+.+....+.+.-..+...+...
T Consensus 89 E~~~~eA~~~l~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 89 EKDLDEAIEILDKRKE-ELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred EecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667666666554 445667777777666666666666655443
No 114
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.24 E-value=6.4e+02 Score=22.67 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 12 DLQNLENQLEMTLRGVRLKKEQILTD 37 (115)
Q Consensus 12 eL~~LE~~Le~sl~~IR~rK~~ll~~ 37 (115)
++..+.+.|+.-...++.+|.+++.+
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~~~ 565 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKKLE 565 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555543
Done!