Query 033615
Match_columns 115
No_of_seqs 176 out of 1123
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 93.7 0.77 2.6E-05 28.9 9.6 46 8-58 3-48 (81)
2 2dgc_A Protein (GCN4); basic d 89.4 1.9 6.5E-05 25.5 6.5 39 22-64 19-57 (63)
3 1dh3_A Transcription factor CR 89.1 2.1 7.1E-05 24.7 6.5 38 23-64 12-49 (55)
4 2wt7_A Proto-oncogene protein 86.3 3.5 0.00012 24.2 6.8 40 23-66 13-52 (63)
5 1jnm_A Proto-oncogene C-JUN; B 85.1 4 0.00014 23.8 6.8 41 22-66 11-51 (62)
6 1dip_A Delta-sleep-inducing pe 84.9 1.7 5.7E-05 27.0 4.4 26 33-58 18-43 (78)
7 1t2k_D Cyclic-AMP-dependent tr 82.9 5 0.00017 23.2 7.9 41 22-66 11-51 (61)
8 2oqq_A Transcription factor HY 81.9 4.7 0.00016 22.2 5.5 26 35-60 15-40 (42)
9 1ci6_A Transcription factor AT 79.5 7.3 0.00025 22.8 7.1 41 22-66 12-52 (63)
10 2yy0_A C-MYC-binding protein; 76.2 7.3 0.00025 22.2 5.0 28 33-60 22-49 (53)
11 3nmd_A CGMP dependent protein 74.8 12 0.00041 22.9 7.6 45 13-62 21-65 (72)
12 1a93_B MAX protein, coiled coi 73.9 6.9 0.00024 20.6 4.0 26 29-54 6-31 (34)
13 1gd2_E Transcription factor PA 69.8 16 0.00053 22.1 7.1 44 21-64 17-63 (70)
14 1hjb_A Ccaat/enhancer binding 66.1 22 0.00074 22.3 6.8 41 22-66 25-65 (87)
15 1gu4_A CAAT/enhancer binding p 64.7 22 0.00074 21.8 6.8 41 22-66 25-65 (78)
16 2dfs_A Myosin-5A; myosin-V, in 61.5 42 0.0014 29.8 8.8 25 40-64 1019-1043(1080)
17 2w6a_A ARF GTPase-activating p 56.1 29 0.00098 20.5 8.7 52 6-57 8-61 (63)
18 1e52_A Excinuclease ABC subuni 55.9 11 0.00039 22.2 3.0 42 4-45 13-58 (63)
19 1go4_E MAD1 (mitotic arrest de 53.4 25 0.00084 22.7 4.6 27 37-63 12-38 (100)
20 3s9g_A Protein hexim1; cyclin 52.5 45 0.0015 21.6 8.3 56 4-60 26-88 (104)
21 1gk7_A Vimentin; intermediate 51.0 27 0.00091 18.6 5.0 27 34-60 10-36 (39)
22 3hnw_A Uncharacterized protein 50.8 54 0.0018 22.0 9.4 52 12-63 76-129 (138)
23 2l5g_A GPS2 protein, G protein 48.7 30 0.001 18.5 3.7 21 37-57 15-35 (38)
24 1g6u_A Domain swapped dimer; d 47.3 33 0.0011 18.6 4.7 26 6-31 15-40 (48)
25 1j1d_C Troponin I, TNI; THIN f 46.9 64 0.0022 21.8 7.6 32 4-35 54-85 (133)
26 3s4r_A Vimentin; alpha-helix, 45.7 53 0.0018 20.5 7.0 16 13-28 11-26 (93)
27 2aze_A Transcription factor DP 44.7 76 0.0026 22.0 8.1 47 9-57 3-49 (155)
28 1j1e_C Troponin I, TNI; THIN f 42.5 89 0.003 22.2 6.7 32 4-35 54-85 (180)
29 1ci6_A Transcription factor AT 42.0 49 0.0017 19.1 5.8 30 31-60 31-60 (63)
30 1t2k_D Cyclic-AMP-dependent tr 41.9 47 0.0016 18.8 5.5 29 32-60 31-59 (61)
31 3s4r_A Vimentin; alpha-helix, 41.4 63 0.0022 20.2 8.9 32 32-63 51-82 (93)
32 3thf_A Protein shroom; coiled- 41.0 74 0.0025 22.8 5.9 35 25-63 11-45 (190)
33 3oja_B Anopheles plasmodium-re 40.3 1.4E+02 0.0047 23.7 9.3 15 45-59 559-573 (597)
34 1ytz_T Troponin T; muscle, THI 38.3 80 0.0027 20.4 6.8 32 4-35 38-69 (107)
35 3w03_C DNA repair protein XRCC 37.5 70 0.0024 22.7 5.3 30 34-63 149-178 (184)
36 3q4f_C DNA repair protein XRCC 34.8 49 0.0017 23.6 4.1 24 36-59 160-183 (186)
37 1j1d_B Troponin T, TNT; THIN f 34.6 93 0.0032 20.1 6.8 32 4-35 38-69 (106)
38 3m48_A General control protein 33.1 54 0.0018 16.9 3.5 23 41-63 4-26 (33)
39 3gp4_A Transcriptional regulat 33.0 1.1E+02 0.0036 20.2 8.3 56 7-63 59-114 (142)
40 2jo8_A Serine/threonine-protei 32.2 55 0.0019 18.6 3.2 11 5-15 7-17 (51)
41 1a92_A Delta antigen; leucine 30.3 57 0.002 18.3 3.0 26 33-58 17-42 (50)
42 3na7_A HP0958; flagellar bioge 27.9 1.7E+02 0.0058 21.0 8.2 39 9-47 88-128 (256)
43 2xus_A Breast cancer metastasi 27.8 86 0.0029 17.6 5.6 31 10-47 12-42 (49)
44 2oxj_A Hybrid alpha/beta pepti 27.4 72 0.0024 16.5 3.9 23 40-62 4-26 (34)
45 2wh0_Q Pkcev3, protein kinase 26.8 51 0.0017 16.4 2.2 15 11-25 13-27 (31)
46 1p9i_A Cortexillin I/GCN4 hybr 26.3 68 0.0023 15.9 3.1 20 44-63 6-25 (31)
47 3ra3_B P2F; coiled coil domain 25.8 66 0.0022 15.6 3.0 19 42-60 5-23 (28)
48 2jee_A YIIU; FTSZ, septum, coi 25.8 1.2E+02 0.0042 18.7 6.3 33 30-62 13-45 (81)
49 3u1c_A Tropomyosin alpha-1 cha 25.5 1.3E+02 0.0044 18.8 5.9 30 15-44 34-65 (101)
50 3gpv_A Transcriptional regulat 25.4 1.5E+02 0.0051 19.5 7.7 55 7-62 73-127 (148)
51 2aze_B Transcription factor E2 24.8 1.4E+02 0.0048 19.0 5.3 36 30-65 6-41 (106)
52 1deb_A APC protein, adenomatou 24.5 1E+02 0.0035 17.4 4.4 21 43-63 9-29 (54)
53 1nkp_B MAX protein, MYC proto- 24.4 1.2E+02 0.004 18.0 5.1 20 41-60 58-77 (83)
54 3azd_A Short alpha-tropomyosin 23.9 44 0.0015 17.5 1.7 25 37-61 4-28 (37)
55 1am9_A Srebp-1A, protein (ster 23.8 1.2E+02 0.0043 18.1 4.7 25 38-62 51-75 (82)
56 4dzo_A Mitotic spindle assembl 23.2 1.6E+02 0.0056 19.2 5.9 18 11-28 4-21 (123)
57 2dfs_A Myosin-5A; myosin-V, in 23.0 4E+02 0.014 23.6 9.3 16 12-27 971-986 (1080)
58 2wg5_A General control protein 22.9 98 0.0033 19.7 3.7 24 34-57 11-34 (109)
59 1fzc_C Fibrin; blood coagulati 22.9 51 0.0018 25.3 2.6 44 10-58 3-46 (319)
60 3uux_B Mitochondrial division 22.2 2.4E+02 0.0083 20.8 9.1 57 7-64 148-204 (242)
61 2zxx_A Geminin; coiled-coil, c 22.2 1.4E+02 0.0049 18.2 4.5 28 34-61 38-65 (79)
62 2qdq_A Talin-1; dimerisation d 22.0 86 0.0029 17.7 2.8 12 45-56 20-31 (50)
63 3m9b_A Proteasome-associated A 21.8 2.2E+02 0.0074 21.2 5.8 33 32-64 56-88 (251)
64 3hnw_A Uncharacterized protein 20.4 2E+02 0.0068 19.1 8.8 52 11-62 68-121 (138)
65 2oa5_A Hypothetical protein BQ 20.3 69 0.0023 21.0 2.5 23 39-61 10-32 (110)
66 3c3f_A Alpha/beta peptide with 20.0 1.1E+02 0.0036 15.9 3.9 22 41-62 5-26 (34)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.71 E-value=0.77 Score=28.93 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 8 LSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNK 58 (115)
Q Consensus 8 Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~ 58 (115)
+|++=|.+||..++.++..|- ++..+|+.||.|...|.+++..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999999999874 5666778888888887777776444
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=89.39 E-value=1.9 Score=25.55 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
.|..+.|.||.+.+ ..|..++..|..+|..|..++....
T Consensus 19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888886554 6899999999999999998887653
No 3
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=89.15 E-value=2.1 Score=24.70 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 23 TLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 23 sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
|..+-|.||-..+ +.|..++..|..+|..|..++....
T Consensus 12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678886544 6888999999999999999887653
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.31 E-value=3.5 Score=24.19 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 23 TLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 23 sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
|..+-|.||.+.+ ..|..++..|..+|..|...+.....+
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566688886554 588999999999999999998776543
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=85.13 E-value=4 Score=23.78 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
.|..+-|.||.+.+ ..|..++..|..+|..|..++.....+
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888886655 589999999999999999998776544
No 6
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.92 E-value=1.7 Score=26.96 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNK 58 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~ 58 (115)
+++.++|.+|..|...|+.||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888864
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.92 E-value=5 Score=23.22 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
.|..+-|.||.+.+ ..+..++..|..+|..|..++.....+
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 11 AAASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788886554 688999999999999999998876554
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.95 E-value=4.7 Score=22.17 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 35 LTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 35 l~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
+......|..++..|+.||..|+..+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44556677888888888888887665
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.46 E-value=7.3 Score=22.84 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
.|..+-|.+|-. .+..+..++..|..+|..|..++.....+
T Consensus 12 ~AA~R~R~KKk~----~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 12 TAATRYRQKKRA----EQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777754 45688888999999999999888776544
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.16 E-value=7.3 Score=22.25 Aligned_cols=28 Identities=36% Similarity=0.410 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
..|..+...|+.|+..|.+++..|..++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777665
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.81 E-value=12 Score=22.88 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 13 LQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 13 L~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+..|+..|......||.+.. .|..+.+......++.+.|+.+++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999988764 3567777777778888888887754
No 12
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.90 E-value=6.9 Score=20.56 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 29 LKKEQILTDEIQELNRKGHLIQLENL 54 (115)
Q Consensus 29 ~rK~~ll~~~i~~lkkk~~~l~een~ 54 (115)
.||..-....|+.+|++...|.++-+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 36777777777777777766666544
No 13
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.83 E-value=16 Score=22.07 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 21 EMTLRGVRLKKEQILT---DEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 21 e~sl~~IR~rK~~ll~---~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
-.|=+..|.||.+.|. .++..+......+..+|..|+..+....
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678899887553 3445555555555667777776665554
No 14
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.11 E-value=22 Score=22.33 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
.|.++-|.++..- ...+..++..|..+|..|..++.....+
T Consensus 25 ~AarrSR~krk~r----~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 25 IAVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666555332 3466778888999999999988876544
No 15
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=64.73 E-value=22 Score=21.85 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033615 22 MTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQE 66 (115)
Q Consensus 22 ~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (115)
.|+++-|.++-.- ...+..++..|..+|..|..++.....+
T Consensus 25 ~AakrSR~krk~r----~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 25 IAVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655433 3467788899999999999999876544
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.53 E-value=42 Score=29.85 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 40 QELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
+.++.|+..|.++|..|+.++++..
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888776653
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=56.08 E-value=29 Score=20.46 Aligned_cols=52 Identities=29% Similarity=0.427 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 6 YGLSVKDLQNLENQLEMTLRGVRL--KKEQILTDEIQELNRKGHLIQLENLELN 57 (115)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~sl~~IR~--rK~~ll~~~i~~lkkk~~~l~een~~L~ 57 (115)
++.++.|-..+-+.|-.|=.+|-. +=..-+.+++..++++...|+.||..|+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 467888888888888777666542 1122344555555556666666665554
No 18
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=55.91 E-value=11 Score=22.22 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=31.4
Q ss_pred CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVK----DLQNLENQLEMTLRGVRLKKEQILTDEIQELNRK 45 (115)
Q Consensus 4 dL~~Ls~~----eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk 45 (115)
+...++.+ -+..|++++..+.....--+...+.++|..++++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44555533 3667888888888888888888888888887765
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.37 E-value=25 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 37 DEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+++..+++++..|..+|..|+..++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888877654
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=52.53 E-value=45 Score=21.60 Aligned_cols=56 Identities=27% Similarity=0.339 Sum_probs=36.3
Q ss_pred CCCCCCHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDL----QNLENQLEMTLRG---VRLKKEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 4 dL~~Ls~~eL----~~LE~~Le~sl~~---IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
.|.++|-.|| ..||..++..-.. .|..- .-...+|..|..++..|..+|..|..+-
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566776665 4577777776322 23221 1225678888888888999998887653
No 21
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=50.98 E-value=27 Score=18.59 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
-+.+..-..-.|++.|+.+|+.|..++
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555678889999999998776
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.78 E-value=54 Score=22.02 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 12 DLQNLENQLEMTLRGVRLKKEQILTD--EIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 12 eL~~LE~~Le~sl~~IR~rK~~ll~~--~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
+...|+++++.--+.+=+-|.++... +++.++++...+.+++..|..++...
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666533 34556666666666666666665544
No 23
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.74 E-value=30 Score=18.45 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033615 37 DEIQELNRKGHLIQLENLELN 57 (115)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~ 57 (115)
+||..++.|...|.++.-.|.
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888887776654
No 24
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.33 E-value=33 Score=18.64 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033615 6 YGLSVKDLQNLENQLEMTLRGVRLKK 31 (115)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~sl~~IR~rK 31 (115)
+++|.+||-.||..|+.--+++-+-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899888888765544444433
No 25
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=46.93 E-value=64 Score=21.76 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQIL 35 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll 35 (115)
+|++||.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 68999999999999999999999988887654
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.70 E-value=53 Score=20.52 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033615 13 LQNLENQLEMTLRGVR 28 (115)
Q Consensus 13 L~~LE~~Le~sl~~IR 28 (115)
|+.|=..|-.=+.+||
T Consensus 11 mq~LNdRlAsyIdKVR 26 (93)
T 3s4r_A 11 LQELNDRFANLIDKVR 26 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 27
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=44.73 E-value=76 Score=22.00 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 9 SVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELN 57 (115)
Q Consensus 9 s~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~ 57 (115)
|..|...||..-..-..+|+.+|.++- ++.....-.++|.+.|+.+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998876542 22222333556666666654
No 28
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=42.46 E-value=89 Score=22.15 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQIL 35 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll 35 (115)
+|++||..+|+.+=+.|-..+..+=+-|+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 68899999999999999999999988888664
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.05 E-value=49 Score=19.10 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 31 KEQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 31 K~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
+.+-+..+...|+.++..|..|+..|..-|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777888877776554
No 30
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.85 E-value=47 Score=18.85 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 32 EQILTDEIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 32 ~~ll~~~i~~lkkk~~~l~een~~L~~~l 60 (115)
...+..+...|+.++..|.+++..|...+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677777777777666543
No 31
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.42 E-value=63 Score=20.16 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 32 EQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 32 ~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
..++...|..+++++..+..++..|..++...
T Consensus 51 ~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 51 GDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999888888888887777554
No 32
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=40.99 E-value=74 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 25 RGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 25 ~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
..|..+|.+++ +.+++|...|.++-..|...+...
T Consensus 11 ~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N 45 (190)
T 3thf_A 11 NLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAN 45 (190)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999887 488899999998888887776543
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.28 E-value=1.4e+02 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 033615 45 KGHLIQLENLELNKK 59 (115)
Q Consensus 45 k~~~l~een~~L~~~ 59 (115)
+...+.+++..+..+
T Consensus 559 ~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 559 KQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333343333333
No 34
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.29 E-value=80 Score=20.41 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQIL 35 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll 35 (115)
+|++||.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 68899999999999999998888888887553
No 35
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=37.51 E-value=70 Score=22.72 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.+++.+..|+.++..|+++|.+|..+....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778889999999999999998876543
No 36
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=34.84 E-value=49 Score=23.62 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 36 TDEIQELNRKGHLIQLENLELNKK 59 (115)
Q Consensus 36 ~~~i~~lkkk~~~l~een~~L~~~ 59 (115)
..+|..++.+...|++||.+|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999999999999764
No 37
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=34.60 E-value=93 Score=20.08 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKKEQIL 35 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll 35 (115)
+|++||.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 47889999999999999988888888887653
No 38
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.09 E-value=54 Score=16.92 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 41 ELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l~~~ 63 (115)
.|..|+..|..+|..|..++...
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 45567777777777777666543
No 39
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.96 E-value=1.1e+02 Score=20.23 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 7 ~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (115)
++|++++..+=.....+-..+..+ ..++.+++..+.++...|......|..++...
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766544433322222222 34667777777777777777777777766543
No 40
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=32.17 E-value=55 Score=18.55 Aligned_cols=11 Identities=45% Similarity=0.604 Sum_probs=7.5
Q ss_pred CCCCCHHHHHH
Q 033615 5 LYGLSVKDLQN 15 (115)
Q Consensus 5 L~~Ls~~eL~~ 15 (115)
|..||++||.+
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 44568888764
No 41
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=30.35 E-value=57 Score=18.33 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNK 58 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~ 58 (115)
+-+...+-..+++.+.|+++|--|..
T Consensus 17 eeler~lrk~kk~iKklEdeNPWLGN 42 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDNPWLGN 42 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCchhh
Confidence 34555666677777888888776653
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.89 E-value=1.7e+02 Score=21.04 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 033615 9 SVKDLQNLENQLEMTLRGVRLKKEQIL--TDEIQELNRKGH 47 (115)
Q Consensus 9 s~~eL~~LE~~Le~sl~~IR~rK~~ll--~~~i~~lkkk~~ 47 (115)
+.+|+..|.+.++..-.++...-.+++ +++++.++....
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777776666666555543 444444444333
No 43
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.78 E-value=86 Score=17.56 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGH 47 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~ 47 (115)
+++|..||++. -.-|++++.+.+..++++..
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Le 42 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34555555333 23355555555555555433
No 44
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.38 E-value=72 Score=16.54 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 40 QELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~~ 62 (115)
..|..|+..|..+|..|..++..
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 34556666667777766665543
No 45
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=26.84 E-value=51 Score=16.36 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLR 25 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~ 25 (115)
.|+..||+++..+|+
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 577888888877764
No 46
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=26.27 E-value=68 Score=15.88 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033615 44 RKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 44 kk~~~l~een~~L~~~l~~~ 63 (115)
.-...++.+|+.|..++++.
T Consensus 6 allasleaenkqlkakveel 25 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33556788888888887654
No 47
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.78 E-value=66 Score=15.58 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033615 42 LNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 42 lkkk~~~l~een~~L~~~l 60 (115)
+++|...|.++-..|..++
T Consensus 5 lkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4444444444444444443
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.77 E-value=1.2e+02 Score=18.66 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 30 KKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 30 rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
.|.+-..+.|.-++-.+..|.++|..|..+..+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777788888888888777666
No 49
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.50 E-value=1.3e+02 Score=18.85 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 033615 15 NLENQLEMTLRGVRL--KKEQILTDEIQELNR 44 (115)
Q Consensus 15 ~LE~~Le~sl~~IR~--rK~~ll~~~i~~lkk 44 (115)
.+|......=.-|++ ||.+.+.++++....
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333433 455555555554443
No 50
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.41 E-value=1.5e+02 Score=19.54 Aligned_cols=55 Identities=4% Similarity=0.053 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 7 ~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
++|++++..+=.....+-..+..+ ..++..++..+.++...|......|..++..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHR-LKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666544322221222222 2466777777777777777777777666643
No 51
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.77 E-value=1.4e+02 Score=19.01 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033615 30 KKEQILTDEIQELNRKGHLIQLENLELNKKLNLIRQ 65 (115)
Q Consensus 30 rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (115)
.|...+..++..|..+++.|.+.-..+...+.....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567778888888888888888887777776653
No 52
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.53 E-value=1e+02 Score=17.43 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033615 43 NRKGHLIQLENLELNKKLNLI 63 (115)
Q Consensus 43 kkk~~~l~een~~L~~~l~~~ 63 (115)
-+.+..|..||..|++++...
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhh
Confidence 344555667777777777554
No 53
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.44 E-value=1.2e+02 Score=18.04 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033615 41 ELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l 60 (115)
.++.....|..+|..|..++
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 54
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.86 E-value=44 Score=17.46 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 37 DEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+.++.+++|.+.|+.+...+...+.
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888877777766655543
No 55
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=23.78 E-value=1.2e+02 Score=18.09 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 38 EIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 38 ~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
-|..|+..+..|.+++..|...+..
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777888888888777654
No 56
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.17 E-value=1.6e+02 Score=19.21 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVR 28 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR 28 (115)
+|+..|+.+++.+=++..
T Consensus 4 ~e~~~l~~qi~~~ekr~~ 21 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQ 21 (123)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544433
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.01 E-value=4e+02 Score=23.64 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033615 12 DLQNLENQLEMTLRGV 27 (115)
Q Consensus 12 eL~~LE~~Le~sl~~I 27 (115)
+|..++..++.+-.+|
T Consensus 971 ~le~~~~e~~~~~~~v 986 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRV 986 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444333333
No 58
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.91 E-value=98 Score=19.68 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELN 57 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~ 57 (115)
.+..++..++++.+.+.++...|+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555443
No 59
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.91 E-value=51 Score=25.31 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 10 VKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNK 58 (115)
Q Consensus 10 ~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~ 58 (115)
++||.+||..+-..=..|+ .|.+.++.++.|+..|.+.-..|..
T Consensus 3 ~~~~~~lE~~Il~~~~~i~-----~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIR-----YLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp -------CTTTTTHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776655544443 3334445555555555444444433
No 60
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.24 E-value=2.4e+02 Score=20.84 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 7 ~Ls~~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
+.|+..|..+=..+..-+.-+--||. +...+|..+-.|+..|....+.+..+|+...
T Consensus 148 SYSl~~Lkk~~~~i~~~LelL~IRK~-ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 148 SYSPSALKSFSQTLVNSLEFLNIQKN-STLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888877777777774 7778888899998888888888877776554
No 61
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.21 E-value=1.4e+02 Score=18.24 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 34 ILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 34 ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
.+..+|+.++..+..|.++|..|.....
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667767777778888877765443
No 62
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=21.97 E-value=86 Score=17.66 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 033615 45 KGHLIQLENLEL 56 (115)
Q Consensus 45 k~~~l~een~~L 56 (115)
+++.|++..+.|
T Consensus 20 ~ErELEeAr~~L 31 (50)
T 2qdq_A 20 KERELEEARKKL 31 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 63
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.81 E-value=2.2e+02 Score=21.18 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 32 EQILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 32 ~~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
.+-+..++..+..+...|.++-+.++.++....
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666655443
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.36 E-value=2e+02 Score=19.12 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLKKEQI--LTDEIQELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~rK~~l--l~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (115)
+||..+..+.+.-...+...+.++ +..++..++-+...+..++..|..++..
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555555555444332 2333333333444444444444444443
No 65
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.35 E-value=69 Score=20.99 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 39 IQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~ 61 (115)
++.|-++...|+-||+.|.+++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777788888988888874
No 66
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.03 E-value=1.1e+02 Score=15.86 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033615 41 ELNRKGHLIQLENLELNKKLNL 62 (115)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l~~ 62 (115)
.+..|+..|-.+|..|..++..
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 4455666666666666665543
Done!