Query 033615
Match_columns 115
No_of_seqs 176 out of 1123
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 06:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033615.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033615hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 55.5 6.5 0.00047 21.4 3.3 40 7-46 9-52 (56)
2 d1t27a_ d.129.3.4 (A:) Phoshat 38.8 15 0.0011 26.0 3.8 24 6-29 236-259 (269)
3 d1r8ea1 a.6.1.3 (A:3-120) Tran 35.4 39 0.0028 19.7 6.1 10 7-16 61-70 (118)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 32.7 33 0.0024 18.1 4.3 23 38-60 34-56 (61)
5 d2zjrv1 a.2.2.1 (V:1-66) Ribos 29.1 40 0.0029 18.2 4.0 30 3-32 4-33 (66)
6 d2azea1 e.63.1.1 (A:199-346) T 25.6 78 0.0056 20.1 7.8 44 11-56 2-45 (148)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 24.6 62 0.0045 18.7 5.3 40 21-61 64-103 (107)
8 d2oa5a1 d.362.1.1 (A:7-102) Un 20.0 34 0.0025 20.4 2.5 23 39-61 4-26 (96)
9 d1r73a_ a.2.2.1 (A:) Ribosomal 18.9 28 0.002 19.0 1.8 28 4-31 5-32 (66)
10 d2azeb1 e.63.1.2 (B:201-301) T 17.9 94 0.0069 18.2 5.9 32 33-64 4-35 (101)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=55.55 E-value=6.5 Score=21.36 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 7 GLSVKD----LQNLENQLEMTLRGVRLKKEQILTDEIQELNRKG 46 (115)
Q Consensus 7 ~Ls~~e----L~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~ 46 (115)
++|.++ +..||+++..+.....--|.-.+.++|..+++..
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 455444 7788999999998888888888888888777653
No 2
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.84 E-value=15 Score=26.01 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 033615 6 YGLSVKDLQNLENQLEMTLRGVRL 29 (115)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~sl~~IR~ 29 (115)
-+||+++++.+|.+....|.++|.
T Consensus 236 ~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 236 VDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999998875
No 3
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=35.44 E-value=39 Score=19.74 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=5.5
Q ss_pred CCCHHHHHHH
Q 033615 7 GLSVKDLQNL 16 (115)
Q Consensus 7 ~Ls~~eL~~L 16 (115)
++|++++..+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4566665544
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.75 E-value=33 Score=18.13 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 38 EIQELNRKGHLIQLENLELNKKL 60 (115)
Q Consensus 38 ~i~~lkkk~~~l~een~~L~~~l 60 (115)
-|..|++++..|.+++..|+...
T Consensus 34 YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 34 YIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776543
No 5
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.14 E-value=40 Score=18.25 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=24.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 3 EQLYGLSVKDLQNLENQLEMTLRGVRLKKE 32 (115)
Q Consensus 3 EdL~~Ls~~eL~~LE~~Le~sl~~IR~rK~ 32 (115)
.||-.+|.+||...-..|...+-..|-.+.
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~~ 33 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQAA 33 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999998888888888886653
No 6
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.56 E-value=78 Score=20.12 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 11 KDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLEL 56 (115)
Q Consensus 11 ~eL~~LE~~Le~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 56 (115)
.|...||........+|+.++.++- ++.....-.++|.+.|+.+
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~Lq--eLi~Q~iafknLV~RN~~~ 45 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHA 45 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHH
Confidence 5778899999999999998887653 2222222345566666544
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.61 E-value=62 Score=18.69 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 21 EMTLRGVRLKKEQILTDEIQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 21 e~sl~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~l~ 61 (115)
+.+...+..++ ..|...|..+.+.+..+.++-..+..++.
T Consensus 64 ~e~~~~l~~~~-e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 64 DELTEELQEKL-ETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333 45566666666666666666666665553
No 8
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=19.99 E-value=34 Score=20.38 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033615 39 IQELNRKGHLIQLENLELNKKLN 61 (115)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~ 61 (115)
.+.|-++...|+-||+.|.+++.
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~ 26 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVK 26 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788889999999998874
No 9
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=18.94 E-value=28 Score=18.99 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033615 4 QLYGLSVKDLQNLENQLEMTLRGVRLKK 31 (115)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~sl~~IR~rK 31 (115)
||-++|.+||...-..+...+-..|..+
T Consensus 5 elr~ls~~eL~~~l~~l~~el~~LRfq~ 32 (66)
T d1r73a_ 5 ELRNYTDEELKNLLEEKKRQLMELRFQL 32 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888777777777777654
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.86 E-value=94 Score=18.15 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033615 33 QILTDEIQELNRKGHLIQLENLELNKKLNLIR 64 (115)
Q Consensus 33 ~ll~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (115)
+-+..++..|..+++.|.+--..+...+...+
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44667778888888888887777777776654
Done!