BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033619
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3
OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
Length = 114
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 88/110 (80%), Gaps = 3/110 (2%)
Query: 5 DDENHATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILP 64
DD TVVGFEVP SP SSYNNVY EDE RDPPAVPPHLQH+LL S + +
Sbjct: 7 DDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME---LAY 63
Query: 65 APQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 114
APQNV+LNHLYIENRD PRSVVALGF+HRFR+K+VTVV+YKPVQRRGS +
Sbjct: 64 APQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSAN 113
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Query: 1 MNQYDDENHATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DA 59
+ Y E+ ++ GFE P+SP++SY+N+ G ED +++PP VPPHLQ TLL+ PA+ D
Sbjct: 180 LQDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDI 239
Query: 60 SGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQR 109
LP PQ+VILNHLY++ SVVALG THRF +KYVTVVLYK +QR
Sbjct: 240 PSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1
OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
Length = 283
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 3/103 (2%)
Query: 7 ENHATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAP 66
EN ++V FE P SPD SY P ED A++P AVPP L TLL + + + I P
Sbjct: 184 ENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKP 240
Query: 67 QNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQR 109
Q+V+LNH++IE P+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 241 QHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 32 NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGF 90
+E+ + PP +PPHL +L+ + +LP P +V+LNHLY + + SV+ L
Sbjct: 198 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSA 255
Query: 91 THRFRSKYVTVVLYKPV 107
THR++ KYVT +LYKP+
Sbjct: 256 THRYKKKYVTTLLYKPI 272
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 32 NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLY-IENRDVPRSVVALG 89
+E+ + PP +PPHL +L+ + +LP P +V+LNHLY + +D SV+ L
Sbjct: 197 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSTKD---SVMVLS 253
Query: 90 FTHRFRSKYVTVVLYKPV 107
THR++ KYVT +LYKP+
Sbjct: 254 ATHRYKKKYVTTLLYKPI 271
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 32 NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGF 90
+E+ + PP +PPHL +L+ + +LP P +V+LNHLY + + SV+ L
Sbjct: 197 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSA 254
Query: 91 THRFRSKYVTVVLYKPV 107
THR++ KYVT +LYKP+
Sbjct: 255 THRYKKKYVTTLLYKPI 271
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 33 EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 91
E+ R PP +PPHL +L+ +LP P +V+LNHLY + + V+ L T
Sbjct: 197 EERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS--IKDGVMVLSAT 254
Query: 92 HRFRSKYVTVVLYKPV 107
HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 33 EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 91
E+ R PP +PPHL +L+ +LP P +V+LNHLY + + V+ L T
Sbjct: 197 EERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS--IKDGVMVLSAT 254
Query: 92 HRFRSKYVTVVLYKPV 107
HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 33 EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 91
E+ + PP +PPHL +L+ +LP P +V+LNHLY + + V+ L T
Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS--IKDGVMVLSAT 254
Query: 92 HRFRSKYVTVVLYKPV 107
HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 33 EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 91
E+ + PP +PPHL +L+ +LP P +V+LNHLY + V+ L T
Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYA--LSIKDGVMVLSAT 254
Query: 92 HRFRSKYVTVVLYKPV 107
HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 33 EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 91
E+ + PP +PPHL +L+ +LP P +V+LNHLY + + V+ L T
Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS--IKDGVMVLSAT 254
Query: 92 HRFRSKYVTVVLYKPV 107
HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 39 PPAVPPHLQHTLL---SYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFR 95
PP +PPHL++ +L S + + SG LP P +VILNHL + + + + + R++
Sbjct: 347 PPQLPPHLENVILNSYSNAQTDNTSGALPIPNHVILNHLATSS--IKHNTLCVASIVRYK 404
Query: 96 SKYVTVVLYKPVQ 108
KYVT +LY P+Q
Sbjct: 405 QKYVTQILYTPLQ 417
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 39 PPAVPPHLQHTLLS-YPASRDA-----SGILPAPQNVILNHLYIENRDVPRSVVALGFTH 92
PP +PP L++ +L+ Y A++D SG LP P +V+LNHL + + + + +
Sbjct: 340 PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIV 397
Query: 93 RFRSKYVTVVLYKPVQ 108
R++ KYVT +LY P++
Sbjct: 398 RYKQKYVTQILYTPIE 413
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYK 105
L S A ++ +LP P +V+LNHL N + V+AL T R+ KYVT ++K
Sbjct: 241 LNSNTAYKEDQSVLPNPNHVLLNHLAAANTQL--GVLALSATTRYHRKYVTTAMFK 294
>sp|Q7A0I6|MGT_STAAW Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
MW2) GN=mgt PE=1 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|A8YY46|MGT_STAAT Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q6G860|MGT_STAAS Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q6GFI3|MGT_STAAR Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q7A4S6|MGT_STAAN Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
N315) GN=mgt PE=1 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q99T05|MGT_STAAM Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=mgt PE=1 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|A6QI56|MGT_STAAE Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
Newman) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q5HEQ0|MGT_STAAC Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
COL) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q2YU13|MGT_STAAB Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|A5IU40|MGT_STAA9 Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
JH9) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q93Q23|MGT_STAA8 Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
NCTC 8325) GN=mgt PE=1 SV=2
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q2FFM1|MGT_STAA3 Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
USA300) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|A6U2X8|MGT_STAA2 Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
JH1) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|A7X3Z2|MGT_STAA1 Monofunctional glycosyltransferase OS=Staphylococcus aureus (strain
Mu3 / ATCC 700698) GN=mgt PE=3 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 50 LLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKY 98
L S + RD G Q V+ N+ Y +R R V L HR +Y
Sbjct: 119 LFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQY 167
>sp|Q18LD8|UL88_ELHVK Protein U59 OS=Elephantid herpesvirus 1 (isolate Asian
elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 346
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 27 NVYPGNEDEARDPPAVP-PHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSV 85
N + +++ +PP + P LQH L + A + N++LN LY+E V R V
Sbjct: 183 NYFIRTANQSTNPPFIQCPPLQHQFLCHVALMELGE--RNETNMVLNALYVEIMWVSRPV 240
Query: 86 VALGFTHRFRSKYVT 100
F+ K VT
Sbjct: 241 CEFSVYTEFKHKLVT 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,173,838
Number of Sequences: 539616
Number of extensions: 1975140
Number of successful extensions: 3385
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3331
Number of HSP's gapped (non-prelim): 49
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)