Query 033619
Match_columns 115
No_of_seqs 109 out of 205
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04739 AMPKBI: 5'-AMP-activa 100.0 1.8E-39 3.8E-44 230.4 4.1 86 20-107 2-100 (100)
2 KOG1616 Protein involved in Sn 99.9 8E-27 1.7E-31 189.2 4.8 91 17-109 196-289 (289)
3 PF14121 DUF4289: Domain of un 44.5 23 0.0005 31.7 3.1 42 59-100 494-536 (614)
4 PHA03144 helicase-primase prim 37.8 15 0.00032 34.7 0.8 23 91-114 210-232 (746)
5 TIGR01160 SUI1_MOF2 translatio 26.8 69 0.0015 23.2 2.7 21 83-103 25-45 (110)
6 PHA03181 helicase-primase prim 26.6 29 0.00063 32.8 0.9 24 90-114 211-235 (764)
7 PHA03140 helicase-primase prim 22.1 40 0.00087 32.0 0.8 25 89-114 211-235 (772)
8 TIGR01159 DRP1 density-regulat 21.3 1E+02 0.0022 24.0 2.8 21 82-102 87-107 (173)
9 PRK00939 translation initiatio 18.0 1.3E+02 0.0028 21.2 2.6 21 83-103 23-43 (99)
10 PF01253 SUI1: Translation ini 17.8 1.4E+02 0.0029 19.8 2.5 20 84-103 5-24 (83)
No 1
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=1.8e-39 Score=230.44 Aligned_cols=86 Identities=55% Similarity=1.003 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCC------------CccCCCCCCCCcccccccCCCCC-CCCCCCCCCCCCeeeeeeeEeeccccCCCEE
Q 033619 20 SPDSSYNNVYPGN------------EDEARDPPAVPPHLQHTLLSYPA-SRDASGILPAPQNVILNHLYIENRDVPRSVV 86 (115)
Q Consensus 20 sP~ssY~~~~p~~------------ed~~k~PP~LPp~L~~~iLN~~~-s~~~~~~Lp~P~HVvLNHLy~~s~~i~~~v~ 86 (115)
+|+++|++++|+. ++++++||.|||||+++|||++. ..|++++||+|+||||||||+++ |++||+
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~--ik~~v~ 79 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSS--IKDGVL 79 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEE--EBTTEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcc--cCCCeE
Confidence 6899999999986 48899999999999999999985 45889999999999999999998 899999
Q ss_pred EEeeceeecceeeEEEEeecc
Q 033619 87 ALGFTHRFRSKYVTVVLYKPV 107 (115)
Q Consensus 87 al~~T~Ry~~KyVTtvlYkP~ 107 (115)
|||+|||||+||||+||||||
T Consensus 80 al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 80 ALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEecceEEEEEEecCC
Confidence 999999999999999999996
No 2
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.93 E-value=8e-27 Score=189.22 Aligned_cols=91 Identities=42% Similarity=0.745 Sum_probs=83.3
Q ss_pred cCCCCCCCCCCCCCCCCccCCC--CCCCCcccccccCCCCCCC-CCCCCCCCCCeeeeeeeEeeccccCCCEEEEeecee
Q 033619 17 VPKSPDSSYNNVYPGNEDEARD--PPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHR 93 (115)
Q Consensus 17 ~p~sP~ssY~~~~p~~ed~~k~--PP~LPp~L~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~i~~~v~al~~T~R 93 (115)
...++..+|+|++|..+++.+. ||.|||||.++|||+.... |++.++++|+||+|||||+.+ |++++++|++|||
T Consensus 196 ~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~s--ik~~~~~~~~~~r 273 (289)
T KOG1616|consen 196 LEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALS--IKDGVMVLSFTHR 273 (289)
T ss_pred cccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhc--cCCCeeEecceec
Confidence 3444599999999999887766 9999999999999987654 999999999999999999998 9999999999999
Q ss_pred ecceeeEEEEeecccc
Q 033619 94 FRSKYVTVVLYKPVQR 109 (115)
Q Consensus 94 y~~KyVTtvlYkP~~r 109 (115)
|++||||++||||+.+
T Consensus 274 ~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 274 YKKKYVTTGLYKPLQL 289 (289)
T ss_pred ccccceeEEeeeeccC
Confidence 9999999999999874
No 3
>PF14121 DUF4289: Domain of unknown function (DUF4289)
Probab=44.47 E-value=23 Score=31.72 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=34.5
Q ss_pred CCCCCCCCCeeeeeeeEeecccc-CCCEEEEeeceeecceeeE
Q 033619 59 ASGILPAPQNVILNHLYIENRDV-PRSVVALGFTHRFRSKYVT 100 (115)
Q Consensus 59 ~~~~Lp~P~HVvLNHLy~~s~~i-~~~v~al~~T~Ry~~KyVT 100 (115)
...+|+.|.-++=|.||....-- |.--+-+|++-||.+||-.
T Consensus 494 ~~~il~lP~~~~~~~lYy~~~lfkk~L~lq~G~~~~YfT~Y~a 536 (614)
T PF14121_consen 494 GEDILPLPEFVTRNNLYYQFKLFKKALFLQTGFDVRYFTKYYA 536 (614)
T ss_pred CCCcCccCeEEEEeEEEEEchhhhhhheeeeeeEEEEeecccC
Confidence 37889999999999999987544 4445689999999999853
No 4
>PHA03144 helicase-primase primase subunit; Provisional
Probab=37.82 E-value=15 Score=34.66 Aligned_cols=23 Identities=35% Similarity=0.755 Sum_probs=20.9
Q ss_pred ceeecceeeEEEEeecccccCCCC
Q 033619 91 THRFRSKYVTVVLYKPVQRRGSTS 114 (115)
Q Consensus 91 T~Ry~~KyVTtvlYkP~~r~~~~~ 114 (115)
+.||.++| |+|-..|.+|+|+.+
T Consensus 210 ~a~F~R~Y-~s~~~Pp~k~~G~~~ 232 (746)
T PHA03144 210 TARFAREY-DTLQFPPVKREGAMA 232 (746)
T ss_pred ceEEEeec-ccccCCccccccccc
Confidence 67999999 999999999999865
No 5
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=26.77 E-value=69 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.8
Q ss_pred CCEEEEeeceeecceeeEEEE
Q 033619 83 RSVVALGFTHRFRSKYVTVVL 103 (115)
Q Consensus 83 ~~v~al~~T~Ry~~KyVTtvl 103 (115)
.+++.+....|-.+|+||+|-
T Consensus 25 ~~~I~Iri~qR~grK~VTiI~ 45 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKTLTTVQ 45 (110)
T ss_pred cceEEEEEEEccCCccEEEEe
Confidence 456777888888889999983
No 6
>PHA03181 helicase-primase primase subunit; Provisional
Probab=26.64 E-value=29 Score=32.83 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.1
Q ss_pred eceeecceeeEEEEeeccccc-CCCC
Q 033619 90 FTHRFRSKYVTVVLYKPVQRR-GSTS 114 (115)
Q Consensus 90 ~T~Ry~~KyVTtvlYkP~~r~-~~~~ 114 (115)
-+.||.++| |+|-..|.+|+ |+.+
T Consensus 211 k~a~F~R~Y-~sv~~Pp~k~~~G~~~ 235 (764)
T PHA03181 211 KEDRFYREY-KSVSSRTKKTKLHNSN 235 (764)
T ss_pred cceeEEeec-ccccCCccccccCCcc
Confidence 367999999 99999999999 8865
No 7
>PHA03140 helicase-primase primase subunit; Provisional
Probab=22.14 E-value=40 Score=32.00 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.5
Q ss_pred eeceeecceeeEEEEeecccccCCCC
Q 033619 89 GFTHRFRSKYVTVVLYKPVQRRGSTS 114 (115)
Q Consensus 89 ~~T~Ry~~KyVTtvlYkP~~r~~~~~ 114 (115)
--+.||.++| |+|...|.+|+|+.+
T Consensus 211 Tk~a~f~R~Y-~sv~~Pp~kr~G~~~ 235 (772)
T PHA03140 211 TKTARIYRSY-ASIFSPPRERAGRLS 235 (772)
T ss_pred cCceEEEecc-ccccCCcccccCCcc
Confidence 3467999999 999999999999764
No 8
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=21.33 E-value=1e+02 Score=23.97 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.5
Q ss_pred CCCEEEEeeceeecceeeEEE
Q 033619 82 PRSVVALGFTHRFRSKYVTVV 102 (115)
Q Consensus 82 ~~~v~al~~T~Ry~~KyVTtv 102 (115)
..+.|.+....|=++|+||+|
T Consensus 87 ~~~~V~I~~~~R~krK~VT~V 107 (173)
T TIGR01159 87 LPQKVTIKREPRTKRKFVTVI 107 (173)
T ss_pred CCCeEEEEEEecCCCceEEEE
Confidence 456788999999999999998
No 9
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=18.05 E-value=1.3e+02 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.1
Q ss_pred CCEEEEeeceeecceeeEEEE
Q 033619 83 RSVVALGFTHRFRSKYVTVVL 103 (115)
Q Consensus 83 ~~v~al~~T~Ry~~KyVTtvl 103 (115)
++.+.+....|=++|+||.|-
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~ 43 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIE 43 (99)
T ss_pred CceEEEEEEecCCCceEEEEe
Confidence 366778888887899999984
No 10
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=17.77 E-value=1.4e+02 Score=19.78 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.7
Q ss_pred CEEEEeeceeecceeeEEEE
Q 033619 84 SVVALGFTHRFRSKYVTVVL 103 (115)
Q Consensus 84 ~v~al~~T~Ry~~KyVTtvl 103 (115)
..+.+.+-.|=.+|+||.|-
T Consensus 5 ~~I~I~~e~r~~~K~vT~V~ 24 (83)
T PF01253_consen 5 PKIHIRVEKRRGRKFVTIVS 24 (83)
T ss_dssp TCEEEEEEESSSSEEEEEEE
T ss_pred CEEEEEEEeCcCCeEEEEEE
Confidence 34667777888899999984
Done!