Query 033619
Match_columns 115
No_of_seqs 109 out of 205
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v8q_B 5'-AMP-activated protei 100.0 2E-40 6.9E-45 230.3 6.9 83 23-107 2-87 (87)
2 2qrd_B SPCC1919.03C protein; A 100.0 2.5E-40 8.6E-45 233.7 5.8 87 20-108 2-96 (97)
3 2qlv_B Protein SIP2, protein S 100.0 4.3E-40 1.5E-44 261.0 5.7 90 16-107 136-252 (252)
4 3t4n_B SNF1 protein kinase sub 100.0 1.5E-37 5.1E-42 224.5 1.2 74 34-109 33-112 (113)
5 2xzm_F EIF1; ribosome, transla 20.9 82 0.0028 21.2 3.1 21 82-102 15-35 (101)
6 2joy_A 50S ribosomal protein L 14.5 1E+02 0.0034 20.5 2.2 22 81-102 4-25 (96)
7 2ogh_A Eukaryotic translation 12.6 1.1E+02 0.0039 20.6 2.1 22 82-103 22-43 (108)
8 3j21_5 50S ribosomal protein L 10.3 1.7E+02 0.0056 19.0 2.2 22 81-102 4-25 (83)
9 3r8s_O 50S ribosomal protein L 7.0 2.7E+02 0.0091 19.1 2.3 26 69-94 29-54 (116)
10 3v2d_S 50S ribosomal protein L 6.9 2.7E+02 0.0093 19.1 2.3 26 69-94 30-55 (112)
No 1
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=100.00 E-value=2e-40 Score=230.26 Aligned_cols=83 Identities=39% Similarity=0.746 Sum_probs=66.8
Q ss_pred CCCCCCCCC--CCccCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeeeeeeeEeeccccCCCEEEEeeceeecceee
Q 033619 23 SSYNNVYPG--NEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYV 99 (115)
Q Consensus 23 ssY~~~~p~--~ed~~k~PP~LPp~L~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~i~~~v~al~~T~Ry~~KyV 99 (115)
++|+|+++. .+|++|+||.|||||+++|||++.+. ||+++||+||||||||||+++ |+++|+|||+|||||+|||
T Consensus 2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~s--ik~~v~alg~T~Ry~~KyV 79 (87)
T 2v8q_B 2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSATHRYKKKYV 79 (87)
T ss_dssp ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECC--CBTTEEEEEEEEEETTEEE
T ss_pred CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEec--ccCCeEEEeeeeeecceeE
Confidence 479999765 48999999999999999999987654 889999999999999999998 7899999999999999999
Q ss_pred EEEEeecc
Q 033619 100 TVVLYKPV 107 (115)
Q Consensus 100 TtvlYkP~ 107 (115)
|+|||||+
T Consensus 80 T~vlYkP~ 87 (87)
T 2v8q_B 80 TTLLYKPI 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeeC
Confidence 99999996
No 2
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Probab=100.00 E-value=2.5e-40 Score=233.67 Aligned_cols=87 Identities=33% Similarity=0.620 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCCCC-----c--cCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeeeeeeeEeeccccCCCEEEEeec
Q 033619 20 SPDSSYNNVYPGNE-----D--EARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFT 91 (115)
Q Consensus 20 sP~ssY~~~~p~~e-----d--~~k~PP~LPp~L~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~i~~~v~al~~T 91 (115)
||+++|+++||... + ++++||.|||||+++|||.+.+. ||+++||+||||||||||+++ |+++|+|||+|
T Consensus 2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~s--ik~~vlalg~T 79 (97)
T 2qrd_B 2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAAN--TQLGVLALSAT 79 (97)
T ss_dssp --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEEC--CSSSSEEEEEE
T ss_pred CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeec--ccCCeEEEeee
Confidence 78899999999763 4 78999999999999999987765 889999999999999999998 78999999999
Q ss_pred eeecceeeEEEEeeccc
Q 033619 92 HRFRSKYVTVVLYKPVQ 108 (115)
Q Consensus 92 ~Ry~~KyVTtvlYkP~~ 108 (115)
||||+||||+|||||++
T Consensus 80 ~Ry~~KyVT~vlYkP~~ 96 (97)
T 2qrd_B 80 TRYHRKYVTTAMFKNFD 96 (97)
T ss_dssp EEETTEEEEEEEEECCC
T ss_pred eeeeceeEEEEEEecCC
Confidence 99999999999999985
No 3
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=100.00 E-value=4.3e-40 Score=260.98 Aligned_cols=90 Identities=31% Similarity=0.634 Sum_probs=50.6
Q ss_pred ecCCCCCCCCCCCCCCC-------C--------------ccCCCCCCCCcccccccCCCCCC------CCCCCCCCCCCe
Q 033619 16 EVPKSPDSSYNNVYPGN-------E--------------DEARDPPAVPPHLQHTLLSYPAS------RDASGILPAPQN 68 (115)
Q Consensus 16 e~p~sP~ssY~~~~p~~-------e--------------d~~k~PP~LPp~L~~~iLN~~~s------~~~~~~Lp~P~H 68 (115)
|.|.+|+++|+|+||.. | ..+++||.|||||+++|||+... .|++++||+|||
T Consensus 136 ~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~~~~~Lp~PnH 215 (252)
T 2qlv_B 136 DLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNH 215 (252)
T ss_dssp ----------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC----------------------------C
T ss_pred cCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccCCcccCCCCCE
Confidence 78999999999999974 1 14699999999999999999765 368999999999
Q ss_pred eeeeeeEeeccccCCCEEEEeeceeecceeeEEEEeecc
Q 033619 69 VILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 107 (115)
Q Consensus 69 VvLNHLy~~s~~i~~~v~al~~T~Ry~~KyVTtvlYkP~ 107 (115)
||||||||+| ||++|||||||||||+|||||||||||
T Consensus 216 VvLNHL~~~s--Ik~~vlal~~T~RYk~KyVTtvlYkP~ 252 (252)
T 2qlv_B 216 VVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYTPI 252 (252)
T ss_dssp CSCCBCEECC--CCSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEeeeEEEec--ccCCEEEEeeeeeecceeEEEEEEeeC
Confidence 9999999998 899999999999999999999999997
No 4
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*
Probab=100.00 E-value=1.5e-37 Score=224.48 Aligned_cols=74 Identities=32% Similarity=0.670 Sum_probs=67.7
Q ss_pred ccCCCCCCCCcccccccCCCCCC------CCCCCCCCCCCeeeeeeeEeeccccCCCEEEEeeceeecceeeEEEEeecc
Q 033619 34 DEARDPPAVPPHLQHTLLSYPAS------RDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 107 (115)
Q Consensus 34 d~~k~PP~LPp~L~~~iLN~~~s------~~~~~~Lp~P~HVvLNHLy~~s~~i~~~v~al~~T~Ry~~KyVTtvlYkP~ 107 (115)
..|++||.|||||+++|||.+.+ .|++++||+|+||||||||+++ ||++|+|||+|||||+||||+|||||+
T Consensus 33 ~~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~s--ik~~vlalg~T~RYk~KyVT~VlYKP~ 110 (113)
T 3t4n_B 33 TSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYTPI 110 (113)
T ss_dssp CGGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECC--CBTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeec--ccCceEEEeeeeeeeceeEEEEEEeec
Confidence 45899999999999999997643 2678999999999999999998 889999999999999999999999999
Q ss_pred cc
Q 033619 108 QR 109 (115)
Q Consensus 108 ~r 109 (115)
+|
T Consensus 111 q~ 112 (113)
T 3t4n_B 111 ES 112 (113)
T ss_dssp C-
T ss_pred cc
Confidence 97
No 5
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=20.87 E-value=82 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.0
Q ss_pred CCCEEEEeeceeecceeeEEE
Q 033619 82 PRSVVALGFTHRFRSKYVTVV 102 (115)
Q Consensus 82 ~~~v~al~~T~Ry~~KyVTtv 102 (115)
.++.+.+....|=.+|.||+|
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V 35 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTV 35 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEeccCCccEEEE
Confidence 346678888889778999998
No 6
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=14.46 E-value=1e+02 Score=20.46 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=18.3
Q ss_pred cCCCEEEEeeceeecceeeEEE
Q 033619 81 VPRSVVALGFTHRFRSKYVTVV 102 (115)
Q Consensus 81 i~~~v~al~~T~Ry~~KyVTtv 102 (115)
++-|.+|+...-||+.|++..|
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv 25 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIV 25 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEE
Confidence 5668899999999999987654
No 7
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=12.65 E-value=1.1e+02 Score=20.64 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=16.1
Q ss_pred CCCEEEEeeceeecceeeEEEE
Q 033619 82 PRSVVALGFTHRFRSKYVTVVL 103 (115)
Q Consensus 82 ~~~v~al~~T~Ry~~KyVTtvl 103 (115)
..+.+.+....|=.+|+||+|-
T Consensus 22 ~~~~V~Ir~~~R~g~K~VT~V~ 43 (108)
T 2ogh_A 22 TSNYIHIRIQQRNGRKTLTTVQ 43 (108)
T ss_dssp CSCSEEEEEECCSSSCCEEEEE
T ss_pred CCCeEEEEEEEccCCceEEEEe
Confidence 3455777777886679999983
No 8
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=10.28 E-value=1.7e+02 Score=19.04 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.0
Q ss_pred cCCCEEEEeeceeecceeeEEE
Q 033619 81 VPRSVVALGFTHRFRSKYVTVV 102 (115)
Q Consensus 81 i~~~v~al~~T~Ry~~KyVTtv 102 (115)
++-|-+|+...-||+.|+...|
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv 25 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVV 25 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEE
Confidence 4557899999999999988665
No 9
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=7.02 E-value=2.7e+02 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=16.8
Q ss_pred eeeeeeEeeccccCCCEEEEeeceee
Q 033619 69 VILNHLYIENRDVPRSVVALGFTHRF 94 (115)
Q Consensus 69 VvLNHLy~~s~~i~~~v~al~~T~Ry 94 (115)
....|+|++=.....+.+..++++.-
T Consensus 29 rSnkhIyAQiidd~~g~tlasAST~e 54 (116)
T 3r8s_O 29 RTPRHIYAQVIAPNGSEVLVAASTVE 54 (116)
T ss_dssp ECSSCEEEEEECTTSSCEEEECCSSS
T ss_pred EeCCEEEEEEEEcCCCeEEEEEeeCc
Confidence 34689999975555565656655543
No 10
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=6.89 E-value=2.7e+02 Score=19.10 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=16.9
Q ss_pred eeeeeeEeeccccCCCEEEEeeceee
Q 033619 69 VILNHLYIENRDVPRSVVALGFTHRF 94 (115)
Q Consensus 69 VvLNHLy~~s~~i~~~v~al~~T~Ry 94 (115)
....|+|++=.+...+.+.+++++.-
T Consensus 30 rSnkhiyAQiidd~~~~tlasAsT~e 55 (112)
T 3v2d_S 30 RSLKHIYAQIIDDEKGVTLVSASSLA 55 (112)
T ss_dssp ECSSCEEEEEEETTTTEEEEEEETTT
T ss_pred EeCCeEEEEEEecCCCeEEEEEEecc
Confidence 34689999865455666666665543
Done!