BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033623
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFW 57
M C+ C V A+ + G + VEV+ ++ V G DP +++ V+ G +AE
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEF 56
MDC C RKV NAV + G V+V ++ V N + +V+S ++A +
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDA---DNDIRAQVESALQKAGY 64
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE 55
MDC C V AV + +V+V+ +VT+T + ++ + S G E
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKSTGKRA 54
MDC C + A++ + G +S +VN +Q+ V+ G P + V+ G A
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA 66
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKV 43
MDC C+ K+ ++ ++G V R+TVT DP +V
Sbjct: 17 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQV 57
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKV 43
MDC C+ K+ ++ ++G V R+TVT DP +V
Sbjct: 12 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQV 52
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRA 54
M C C VR ++ + G + VEV+ + V V + +V ++ TG++A
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQA 80
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRA 54
M C+ C ++ + ++ G S+ + +Q ++V V P+ ++ +++ GK A
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68
>pdb|2CG9|X Chain X, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|Y Chain Y, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 134
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 2 DCDGCERKVRNAVSSIRGAKSVEV-----NRKQSRVTVTGYVDPNKVLKKVKSTGKR--- 53
DCD E ++ + ++ V + Q + + + P K + KV + G+
Sbjct: 33 DCDAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKV-ANGQHYFL 91
Query: 54 --------AEFWPYVPYNLVAYPYVAQAYDK 76
+E+WP + V YPY+ +DK
Sbjct: 92 KLYKKDLESEYWPRLTKEKVKYPYIKTDFDK 122
>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
Length = 432
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 68 PYVAQAYDKKAPSGYVKN---VVQALPSPNATDERLTT 102
PY Y++ P V+ V +A+P P AT ERLTT
Sbjct: 249 PYSPLWYEEPIPPDAVEQMAAVARAVPIPVATGERLTT 286
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 3 CDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE 55
C+ C V AV + +V+V+ +VT+T + ++ + S G E
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 64
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE 55
+ C+ C V AV + +V+V+ +VT+T + ++ + S G E
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKV 43
+ C C K V I G VN S++TVTG +V
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQV 54
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKSTGKRA 54
M C C + A++ + G +S +VN +Q+ V+ G P + V+ G A
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA 67
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKSTGKRAEF 56
M CD C V+ A+ + G +S V+ + +++ + P+ + V G +A
Sbjct: 9 MTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATL 66
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKSTGKRA 54
M C C + A++ + G +S +VN +Q+ V+ G P + V+ G A
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA 67
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 65 VAYPYVAQAYDKKAPSGYVKNVVQALP-SPNATDERLTTLFSDENPN 110
V Y + D+K +G ++ V+ LP SP D R L+++ENPN
Sbjct: 3 VCYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFL-LYTNENPN 48
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 65 VAYPYVAQAYDKKAPSGYVKNVVQALP-SPNATDERLTTLFSDENPN 110
V Y + D+K +G ++ V+ LP SP D R L+++ENPN
Sbjct: 5 VCYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFL-LYTNENPN 50
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 93 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 127
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 94 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 128
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 96 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 130
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 3 CDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE 55
C+ C V AV + +V+V+ +VT+T + ++ + S G E
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE 64
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 92 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 126
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 90 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 124
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 93 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 127
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 99 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 133
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 90 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 124
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 93 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 127
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 90 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 124
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + + +DE +T +FS
Sbjct: 90 AEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFS 124
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKV 43
M C C + A+ ++G V R+TVT DP +V
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVT--YDPKQV 52
>pdb|3LN6|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Streptococcus Agalactiae
Length = 750
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 4 DGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVD-PNKVLKKVKSTGKRAEFWPYVPY 62
D ++K+ N V S+R + VN K R++ T D N + VKS AE Y P
Sbjct: 201 DFLDQKLNNPVRSLRNSHLGYVNHKDIRISYTSLKDYVNDLENAVKSGQLIAEKEFYSPV 260
Query: 63 NL 64
L
Sbjct: 261 RL 262
>pdb|1OT7|A Chain A, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
pdb|1OT7|B Chain B, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
Length = 229
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK P+G+ + + + +DE +T +FS
Sbjct: 91 AEIFNKKLPAGHADLLEERIRKSGISDEYITPMFS 125
>pdb|1OSV|A Chain A, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
pdb|1OSV|B Chain B, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
Length = 230
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK P+G+ + + + +DE +T +FS
Sbjct: 91 AEIFNKKLPAGHADLLEERIRKSGISDEYITPMFS 125
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 1 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT 35
M C C V+ A+S + G V+V + + VT
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 AQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFS 105
A+ ++KK PSG+ + + + +DE +T +FS
Sbjct: 94 AEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,247,946
Number of Sequences: 62578
Number of extensions: 110586
Number of successful extensions: 251
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 38
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)