BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033625
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa
subsp. japonica GN=Os09g0505700 PE=1 SV=1
Length = 228
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 102/115 (88%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
MRPGV+L+PGT VEEV+PLVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 114 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 173
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
LDIEVDGGLGPSTI AASAGANCIVAGSS+FGA EP VIS +RKSVE +Q S
Sbjct: 174 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
Length = 228
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 4/116 (3%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M+ G+A+KPGTSVE + P AN ++M LVMTVEPGFGGQKFM +MM KV LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
LDIEVDGG+GP T+ + A AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1
Length = 228
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 4/116 (3%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M+ G+A+KPGTSVE + P AN ++M LVMTVEPGFGGQKFM +MM KV LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
LDIEVDGG+GP T+ + A AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1
Length = 228
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 86/116 (74%), Gaps = 4/116 (3%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M+ G+A+KPGT+VE + P AN ++M LVMTVEPGFGGQKFM +MM KV LR ++P+
Sbjct: 113 MKVGLAIKPGTTVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPT 169
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
LDIEVDGG+GP T+ + A AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 170 LDIEVDGGVGPDTVQKCAEAGANMIVSGSAIMRSDDPRAVINLLRNVCSEAAQKRS 225
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1
Length = 238
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 81/108 (75%), Gaps = 3/108 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
++ A+KPGTSV+ ++ L A ++M LVMTVEPGFGGQKFM +MM KV +LR ++P
Sbjct: 123 IKAACAIKPGTSVDVLFEL---APHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH 179
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
L+I+VDGGLG TI +AA AGAN IVAG+SVF A +P VIS M++ V
Sbjct: 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1
PE=3 SV=1
Length = 239
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+R A+KP T V+ ++ L A ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P
Sbjct: 121 IRAACAIKPDTPVDVLFEL---APYLDMALVMTVEPGFGGQKFMPDMMPKVAALREKFPQ 177
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110
LDI+VDGGLG TI AA AGAN IVAG+SVF A + VIS M+ +V D
Sbjct: 178 LDIQVDGGLGKETIPHAAKAGANVIVAGTSVFAAADQKDVISYMKDNVRD 227
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPE1 PE=3 SV=1
Length = 246
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
++ A+KPGT V+ ++ L A ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P
Sbjct: 126 IKAACAIKPGTPVDVLFEL---APYLDMALVMTVEPGFGGQKFMPDMMPKVEALRTKFPH 182
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
++I+VDGGLG TI AA AGAN IVAG+SVF A +P VIS M++ V K
Sbjct: 183 MNIQVDGGLGKETIGVAAKAGANVIVAGTSVFTASDPHEVISFMKEEVRKELK 235
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1
Length = 228
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 78/115 (67%), Gaps = 3/115 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M G ALKP T VE + P VE ++MVLVMTVEPG GGQ FMPE + KV LR +YP+
Sbjct: 113 MLVGCALKPKTPVEVILPFVE---KLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPT 169
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
L++EVDGGL T+ AA AGAN IVAG++VF A P VIS +R SV AQ+
Sbjct: 170 LNVEVDGGLSLKTVDAAADAGANVIVAGTAVFHAQSPEEVISGLRNSVMKAQETK 224
>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1
Length = 228
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 7/114 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS- 60
R +ALKP T VE P + ++M+L+MTVEPGFGGQ F+ M+ K+R R
Sbjct: 108 RASMALKPATPVE---PYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKH 164
Query: 61 ---LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
L ++VDGG+ +TI A AGA+ VAGS+V+GA +PA + +R + A
Sbjct: 165 GLELWLQVDGGVSAATIERCADAGADVFVAGSAVYGASDPAEAVRALRTQADAA 218
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe
PE=3 SV=1
Length = 229
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 76/110 (69%), Gaps = 7/110 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+++KPGT +E P ++ + +LVM+VEPGFGGQ+F+PE++ KVR++R
Sbjct: 113 KAGISVKPGTPLE---PYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAG 169
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
++ +E+DGG+ TI +AA AG +C VAGS+V+GA +PA ++ +R+
Sbjct: 170 ELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAAAVAALRRQ 219
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpe PE=3 SV=1
Length = 229
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 76/110 (69%), Gaps = 7/110 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+++KPGT +E P ++ + +LVM+VEPGFGGQ+F+PE++ KVR++R
Sbjct: 113 KAGISVKPGTPLE---PYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAG 169
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
++ +E+DGG+ TI +AA AG +C VAGS+V+GA +PA ++ +R+
Sbjct: 170 ELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAAAVAALRRQ 219
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpe PE=1 SV=3
Length = 230
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 9/111 (8%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ G L P T ++ +E PV +++L+M+V PGFGGQ F+PE++ K+R+LR
Sbjct: 114 KAGAVLNPSTPLD----FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169
Query: 61 --LD--IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
LD IEVDGGL P+ + AGAN IVAGS+VF AP A I+ +R S
Sbjct: 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 220
>sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae (strain TN)
GN=rpe PE=3 SV=1
Length = 224
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+ +KPGT + P ++ + +L+M+VEPGFGGQ F+PE++ KVR++R
Sbjct: 108 KAGIGVKPGTPLN---PYLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKVRTVRKMVDAG 164
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 93
++ +E+DGG+ TI +AA AG +C VAGS+V+G
Sbjct: 165 ELTILVEIDGGINADTIEQAAEAGVDCFVAGSAVYG 200
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----R 57
+ GV L PGT + + +++ V++VL+M+V PGFGGQ F+ + K+ LR R
Sbjct: 166 KAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAER 222
Query: 58 YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
+ IEVDGG+GP + AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 223 GLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS 272
>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3
SV=1
Length = 225
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+ P T + + +++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R
Sbjct: 112 KAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDES 168
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
+ +EVDGG+ + I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 169 GFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=rpe PE=1 SV=1
Length = 225
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+ P T + + +++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R
Sbjct: 112 KAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDES 168
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
+ +EVDGG+ + I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 169 GFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1
Length = 225
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+ P T + + +++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R
Sbjct: 112 KAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDES 168
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
+ +EVDGG+ + I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 169 GFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe
PE=3 SV=1
Length = 225
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
+ G+ P T + + +++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R
Sbjct: 112 KAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDES 168
Query: 60 --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
+ +EVDGG+ + I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 169 GFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa
subsp. japonica GN=RPE PE=1 SV=2
Length = 274
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 2 RPGVALKPGTSVEEV-YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ GV L P T + + Y L + V++VL+M+V PGFGGQ F+ + K+ LR
Sbjct: 160 KAGVVLNPATPLTAIDYVL----DVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAE 215
Query: 61 LD----IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
IEVDGG+GP + AGAN IVAGS+VFGAP+ A I K ++ +QK
Sbjct: 216 KGVNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAI----KGIKTSQK 268
>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEP PE=3 SV=1
Length = 241
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS- 60
+ G+ L P T + L + +++VL+M+V PGFGGQ F+P ++DKVR R R
Sbjct: 123 KAGLVLNPATPLSW---LDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQ 179
Query: 61 -------LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
+ +E+DGG+ I E A AGA+ VAGS+VFGAP+
Sbjct: 180 VAAGGRPVWLEIDGGVKADNITEIARAGADTFVAGSAVFGAPD 222
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpe PE=3 SV=1
Length = 228
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----R 57
+ G+A P T + + ++E ++++L+M+V PGFG Q F+P +K+R +R
Sbjct: 112 KAGLAFNPATPLNFLDYILE---KLDLILLMSVNPGFGNQSFLPSTFNKLREVRKIIDAN 168
Query: 58 YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
+ + +EVDGG+ IA+ A AGAN V GS +F VI +RK +E A S
Sbjct: 169 FSDILLEVDGGVKLDNIADIACAGANVFVMGSGLFKYSNYKLVIEKIRKKLEYAHSRS 226
>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEC PE=3 SV=1
Length = 241
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS- 60
+ G+ L P T + L + +++VL+M+V PGFGGQ F+P ++DKVR R R
Sbjct: 123 KAGLVLNPATPLGW---LDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQ 179
Query: 61 -------LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
+ +E+DGG+ IA A AGA+ VAGS+VFGAP+
Sbjct: 180 VDAGGRPVWLEIDGGVKADNIAAIARAGADTFVAGSAVFGAPD 222
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5)
GN=rpe PE=3 SV=1
Length = 222
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL---RNRY 58
+ GV + PGTS+ + E + VL+M+V PGF GQKF+ ++++R L R+R
Sbjct: 109 KAGVVVNPGTSLSAIE---EALYYADYVLLMSVNPGFSGQKFIERSIERLRILKEMRDRI 165
Query: 59 -PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
PS IE+DGG+ + IAE AGA+ +V GS +FGA +
Sbjct: 166 NPSCLIEIDGGIKENNIAEVVRAGADVVVVGSGIFGAKD 204
>sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpe PE=3 SV=1
Length = 217
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMD---KVRSLRNR 57
+ PG+ L P T E + L+E V +VL+M+V PGFGGQKF+ +++ KV+ L R
Sbjct: 105 ITPGIVLNPHTHEESIKYLLES---VGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKR 161
Query: 58 Y-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
Y PS +EVDGG+ I E AG + +V+GS +F + +
Sbjct: 162 YNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFKSKD 201
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 2 RPGVALKPGTSVEEV-YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
+ GV L PGT + + Y L + V++VL+M+V PGFGGQ F+ + K+ LR
Sbjct: 171 KAGVVLNPGTPLSTIEYVL----DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVE 226
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
+ + IEVDGG+ P+ + AGAN +VAGS+VFGA + A I ++ S
Sbjct: 227 KGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKAS 277
>sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain J99)
GN=rpe PE=3 SV=1
Length = 217
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMD---KVRSLRNR 57
+ PG+ L P T E + L+E V +VL+M+V PGFGGQKF+ +++ KV+ L R
Sbjct: 105 ITPGIVLNPHTHEESIKYLLES---VGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKR 161
Query: 58 Y-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
Y PS +EVDGG+ I E AG + +V+GS +F + +
Sbjct: 162 YNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFESKD 201
>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1
Length = 224
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAAS 79
+ V++VL+M+V PGFGGQ F+P + K++ R + +EVDGG+ IAE A+
Sbjct: 131 DKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKVDNIAEIAA 190
Query: 80 AGANCIVAGSSVFGAPEPAHVISLMRKSV 108
AGA+ VAGS++FG P+ VI +R +
Sbjct: 191 AGADMFVAGSAIFGKPDYKQVIDQIRTQL 219
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE
PE=3 SV=2
Length = 228
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 6/94 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M+ GVA+ PGT E + +++ A ++V VMTV PGFGGQK++ +M KVR LR
Sbjct: 113 MKSGVAINPGTPAEAIEHVLDIA---DVVCVMTVNPGFGGQKYI-DMTAKVRKLRAMIGD 168
Query: 61 --LDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
+ IE+DGG+ P T A+AGA+ VAGS VF
Sbjct: 169 RPVHIEIDGGMDPVTAPLMAAAGADVFVAGSGVF 202
>sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpe PE=3 SV=1
Length = 234
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-----N 56
+P VAL P T ++ + ++ V VLVMTVEPGF GQKF+P M K+R L+ N
Sbjct: 107 KPIVALNPATPLDAIEYIL---GDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVEN 163
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
Y + I VDGG+ T A AGA+ +VA S++FG + + +R++ +A
Sbjct: 164 GYDT-KIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEA 217
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rpe PE=3 SV=1
Length = 228
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--- 58
+ G+AL P TS+ + ++E ++++L+M+V PGFG Q F+P +K+R +R +
Sbjct: 112 KAGLALNPATSLNFLDYVME---KLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELN 168
Query: 59 -PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
++ +EVDGG+ I+E A +GAN V GS +FG +
Sbjct: 169 SSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTD 207
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3
SV=1
Length = 210
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS- 60
+ G+ P T + + +++ ++++L+M+V PGFGGQ F+ +DK+R +R
Sbjct: 112 KAGLVFNPATPLSYLDYVMD---KIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKLIDDS 168
Query: 61 ---LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
+ +EVDGG+ IAE A+AGA+ VAGS++FG P+
Sbjct: 169 GRDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGQPD 207
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168)
GN=rpe PE=3 SV=1
Length = 217
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--- 57
++ GV L P T V+ + + + +++VL+MTV PGFGGQKF+ ++ K++ ++
Sbjct: 108 VKAGVVLNPHTPVQVIEHVFDD---LDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADE 164
Query: 58 --YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
L IEVDGG+ T AGAN +VAGS+V+G + IS +R S
Sbjct: 165 KGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGS 216
>sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpe PE=3 SV=1
Length = 228
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 17/120 (14%)
Query: 2 RPGVALKPGTSVEEVYPLVEGAN---PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR--- 55
+ G+AL P T PL N ++++L+M+V PGF GQKF+P +++K+R +R
Sbjct: 114 KVGLALNPLT------PLCVLDNVLDKIDLILLMSVNPGFPGQKFIPSILNKIRIVRELI 167
Query: 56 -NRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
++ +EVDGG+ S I + AS G + V GS++F + L +S D KN
Sbjct: 168 DKSKKNILLEVDGGINLSNIFKIASFGTDIFVIGSAIFNSINY----DLTIRSFRDVLKN 223
>sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=rpe PE=3 SV=1
Length = 228
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 11/99 (11%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP 59
++ G+A P TS+E + + P+ +++L+M+V+PGF GQKF+P+ ++K+R +R
Sbjct: 112 VQAGIAFSPETSIEFISAFI----PLCDVILLMSVQPGFCGQKFIPDTIEKIRFVRQAIQ 167
Query: 60 SLD------IEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
+L IEVDGG+ + AGA+ +VA S F
Sbjct: 168 TLGKEGSCLIEVDGGIDEESARACREAGADILVAASYFF 206
>sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=alsE PE=1 SV=1
Length = 231
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNR 57
M+ G+ L P T VE + + A+ + VMTV+PGF GQ F+PEM+DK +++ R R
Sbjct: 107 MKVGLILNPETPVEAMKYYIHKADKIT---VMTVDPGFAGQPFIPEMLDKLAELKAWRER 163
Query: 58 Y-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90
+IEVDG +T + +AGA+ + G+S
Sbjct: 164 EGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTS 197
>sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE
PE=3 SV=2
Length = 225
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RY 58
++ GVAL P + + + ++E +++VL+M+V PGFGGQ F+P + K+ +L N R
Sbjct: 111 LKAGVALNPASPLSLLDHILED---LDLVLIMSVNPGFGGQSFIPSALPKIAALANGRRR 167
Query: 59 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
VDGG+ P+ A GA+ +V ++FGA + A I+ +R + E
Sbjct: 168 ACRGDRVDGGVNPADARALARPGADILVR-LAIFGASDRAKAIASIRGAAE 217
>sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema pallidum (strain
Nichols) GN=rpe PE=3 SV=1
Length = 218
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 13/99 (13%)
Query: 1 MRPGVALKPGT---SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL--- 54
++ G++L P T ++ EV P V+ +VLVMTV PGF GQ+ + + KV +L
Sbjct: 111 VKVGISLVPSTPVAALSEVLPFVD------LVLVMTVNPGFSGQQMIAHCLSKVSALVQM 164
Query: 55 -RNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
R S I VDGG+ T+ +A AGA+ IV+GS+ F
Sbjct: 165 RTERGYSYMISVDGGIDCRTLPQALDAGADVIVSGSAFF 203
>sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpe PE=3 SV=1
Length = 233
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 11/99 (11%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--- 56
++ GVA P TS+E V + P+ +++L+M+V PGF GQKF+P+ +++++ ++
Sbjct: 117 VQAGVAFSPETSIEFVTSFI----PLCDVILLMSVHPGFCGQKFIPDTIERIQFVKQAIQ 172
Query: 57 ---RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
R S IEVDGG+ + AGA+ +VA S F
Sbjct: 173 VLGREGSCLIEVDGGIDKESARACREAGADILVAASYFF 211
>sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPE1 PE=3 SV=1
Length = 217
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
G+AL P T V++ + VL+M+V+PGFGGQKF E + KV +R RY + +
Sbjct: 115 GIALNPETQVDDAE-----MRSADFVLIMSVKPGFGGQKFQEECLAKVEEVR-RYGKM-V 167
Query: 64 EVDGGLGPSTIAEAASAGANCIVAGSSVF 92
+DGG+ S I GA+ V GS F
Sbjct: 168 GIDGGIEMSNIGRI--TGADYAVVGSGYF 194
>sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3
SV=1
Length = 229
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
++ G+A P TS+E + + + +V++M+V PGF GQ F+P ++K+ R+ +
Sbjct: 113 VQAGLAFSPDTSIEFLPSFLPFCD---VVVLMSVYPGFTGQSFLPNTIEKIAFARHAIKT 169
Query: 61 LD------IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA 98
L IEVDGG+ + AGA+ +V S +F A A
Sbjct: 170 LGLKDSCLIEVDGGIDQQSAPLCRDAGADILVTASYLFEADSLA 213
>sp|P39362|SGCE_ECOLI Protein SgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1
Length = 210
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSL 61
R G+ P T ++ L A+ ++ V+VMT EP GQ+F+P M +K++ +R +P
Sbjct: 108 RAGLVFNPATPIDAWRYL---ASELDGVMVMTSEPDGQGQRFIPSMCEKIQKVRTAFPQT 164
Query: 62 DIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
+ DGG+ + + A+AGA +V G ++F + +
Sbjct: 165 ECWADGGITLAAAQQLAAAGAQHMVIGRALFSSSD 199
>sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rpe PE=3 SV=1
Length = 209
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
G+A K T+++ P ++ + +M+V PG GGQ F + ++ + N Y +L I
Sbjct: 113 GLAFKFTTNLQLYQPFF---TTIDFITLMSVPPGKGGQAFNEAVFTNLK-IANHY-NLKI 167
Query: 64 EVDGGLGPSTIAEAASAGANCIVAGS 89
E+DGG+ + I + A + IV GS
Sbjct: 168 EIDGGIKVNNI-DQIKAFVDFIVMGS 192
>sp|Q07PW9|THIG_RHOP5 Thiazole synthase OS=Rhodopseudomonas palustris (strain BisA53)
GN=thiG PE=3 SV=1
Length = 260
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
D ++ LR+R P + + VD GLG PS AEA G + ++ +++ A PA + + + +
Sbjct: 166 DALKLLRDRLPDITLVVDAGLGAPSHAAEAMELGFDAVLLNTAIAKAEHPAVMAAAFKLA 225
Query: 108 VE 109
+E
Sbjct: 226 IE 227
>sp|Q133T5|THIG_RHOPS Thiazole synthase OS=Rhodopseudomonas palustris (strain BisB5)
GN=thiG PE=3 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
D ++ LR+R P + + VD GLG PS AEA G + ++ +++ A +P + R +
Sbjct: 166 DALKLLRDRLPDITLVVDAGLGAPSHAAEAMELGYDAVLLNTAIAKAEDPVAMARAFRLA 225
Query: 108 VE 109
V+
Sbjct: 226 VD 227
>sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpe PE=3 SV=1
Length = 215
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
G+A K T + LV+ ++ V +M+V PG GGQ F + + ++ + S I
Sbjct: 118 GLAFKFTTPLVNYERLVQ---QLDFVTLMSVPPGKGGQAFNSAVFNNLKQAHKYHCS--I 172
Query: 64 EVDGGLGPSTIAEAASAGANCIVAGS 89
E+DGG+ I + N IV GS
Sbjct: 173 EIDGGIKLDNIHQIQD-DVNFIVMGS 197
>sp|Q2IYP6|THIG_RHOP2 Thiazole synthase OS=Rhodopseudomonas palustris (strain HaA2)
GN=thiG PE=3 SV=1
Length = 260
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
D ++ LR+R P + + VD GLG PS AEA G + ++ +++ A +P + + +
Sbjct: 166 DALKLLRDRLPDITLVVDAGLGAPSHAAEAMELGYDAVLLNTAIAKAEDPVAMARAFKLA 225
Query: 108 VE 109
VE
Sbjct: 226 VE 227
>sp|Q8Z2Y1|LSRE_SALTI Putative epimerase LsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1
Length = 254
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 59
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLYERVAQLLCLLGDKRE 192
Query: 60 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q5PJE1|LSRE_SALPA Putative epimerase LsrE OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=lsrE PE=3 SV=1
Length = 254
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 59
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192
Query: 60 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q3SPS2|THIG_NITWN Thiazole synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=thiG PE=3 SV=1
Length = 260
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
D ++ LR R P + + VD GLG PS A+A G + ++ ++V A +P + R +
Sbjct: 166 DALKLLRERLPDVTLVVDAGLGAPSHAAQACELGYDAVLLNTAVAKAADPVVMAGAFRLA 225
Query: 108 VE 109
VE
Sbjct: 226 VE 227
>sp|Q8ZKP8|LSRE_SALTY Putative epimerase LsrE OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=lsrE PE=2 SV=1
Length = 254
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 59
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192
Query: 60 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,393,166
Number of Sequences: 539616
Number of extensions: 1655454
Number of successful extensions: 5054
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 4908
Number of HSP's gapped (non-prelim): 260
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)