Query 033625
Match_columns 115
No_of_seqs 109 out of 1177
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 100.0 4.5E-35 9.8E-40 216.7 12.2 107 1-110 110-219 (220)
2 PRK08745 ribulose-phosphate 3- 100.0 1.8E-34 3.9E-39 215.0 13.3 108 1-111 111-222 (223)
3 PRK08091 ribulose-phosphate 3- 100.0 1.4E-33 3E-38 210.8 13.0 104 2-108 120-227 (228)
4 PRK08005 epimerase; Validated 100.0 2.1E-33 4.6E-38 207.7 12.5 102 1-105 107-208 (210)
5 PRK14057 epimerase; Provisiona 100.0 2.8E-33 6E-38 211.7 13.2 108 2-112 134-245 (254)
6 PRK09722 allulose-6-phosphate 100.0 1.3E-32 2.9E-37 205.6 13.6 108 1-111 109-222 (229)
7 KOG3111 D-ribulose-5-phosphate 100.0 1.2E-32 2.7E-37 199.9 12.3 110 1-113 113-222 (224)
8 PRK08883 ribulose-phosphate 3- 100.0 9.7E-33 2.1E-37 205.3 12.0 107 1-110 107-217 (220)
9 PF00834 Ribul_P_3_epim: Ribul 100.0 5.1E-31 1.1E-35 193.8 6.1 92 1-95 106-201 (201)
10 PTZ00170 D-ribulose-5-phosphat 100.0 6.6E-28 1.4E-32 180.0 10.9 110 1-111 115-224 (228)
11 PLN02334 ribulose-phosphate 3- 99.9 1.9E-26 4.2E-31 171.6 13.9 108 1-111 116-225 (229)
12 PRK05581 ribulose-phosphate 3- 99.9 2.2E-21 4.7E-26 142.3 12.2 105 1-108 110-218 (220)
13 TIGR01163 rpe ribulose-phospha 99.8 1.7E-20 3.6E-25 136.4 11.3 101 2-105 106-210 (210)
14 cd00429 RPE Ribulose-5-phospha 99.8 5.1E-20 1.1E-24 133.6 11.0 101 2-105 107-211 (211)
15 PRK13125 trpA tryptophan synth 99.8 1.4E-19 3E-24 136.1 12.0 101 1-105 130-234 (244)
16 PRK13307 bifunctional formalde 99.8 2.1E-19 4.5E-24 143.3 11.5 101 1-109 277-379 (391)
17 TIGR03128 RuMP_HxlA 3-hexulose 99.8 3.3E-19 7.2E-24 129.9 11.6 101 1-107 103-205 (206)
18 PRK13306 ulaD 3-keto-L-gulonat 99.8 5E-19 1.1E-23 131.3 9.8 106 2-110 108-213 (216)
19 PRK13813 orotidine 5'-phosphat 99.8 5.3E-20 1.1E-24 135.3 2.5 105 1-110 107-214 (215)
20 PRK00043 thiE thiamine-phospha 99.7 2.6E-17 5.7E-22 119.7 11.3 106 2-112 106-212 (212)
21 cd04726 KGPDC_HPS 3-Keto-L-gul 99.7 4.5E-17 9.7E-22 118.0 10.6 96 1-103 104-201 (202)
22 TIGR00262 trpA tryptophan synt 99.7 4.1E-16 8.8E-21 118.4 12.0 104 1-109 141-253 (256)
23 cd04724 Tryptophan_synthase_al 99.7 3.6E-16 7.8E-21 117.6 11.1 88 1-93 130-220 (242)
24 cd00564 TMP_TenI Thiamine mono 99.7 3.7E-16 8.1E-21 111.3 10.2 98 2-105 97-195 (196)
25 COG0352 ThiE Thiamine monophos 99.6 5.2E-15 1.1E-19 109.7 11.0 102 7-112 109-210 (211)
26 PRK07028 bifunctional hexulose 99.6 1.5E-14 3.2E-19 116.3 11.5 103 2-110 109-212 (430)
27 CHL00200 trpA tryptophan synth 99.5 1.5E-13 3.2E-18 104.9 12.0 104 2-110 146-256 (263)
28 PRK12290 thiE thiamine-phospha 99.5 1.7E-13 3.7E-18 110.5 10.9 104 5-111 303-415 (437)
29 PRK03512 thiamine-phosphate py 99.5 9.3E-13 2E-17 97.5 11.3 102 5-109 105-207 (211)
30 PRK06512 thiamine-phosphate py 99.5 1.1E-12 2.3E-17 97.8 11.1 97 10-110 118-214 (221)
31 PRK02615 thiamine-phosphate py 99.4 1.2E-12 2.6E-17 103.3 10.9 102 5-110 243-344 (347)
32 PRK07695 transcriptional regul 99.4 1.9E-12 4E-17 94.5 11.0 87 24-111 114-200 (201)
33 TIGR00693 thiE thiamine-phosph 99.4 4.2E-12 9.2E-17 91.7 9.7 96 6-104 100-196 (196)
34 PLN02898 HMP-P kinase/thiamin- 99.4 1.3E-11 2.8E-16 101.1 12.0 106 6-115 394-502 (502)
35 PRK09140 2-dehydro-3-deoxy-6-p 99.3 3.3E-11 7.1E-16 89.0 10.0 92 6-109 108-204 (206)
36 COG0269 SgbH 3-hexulose-6-phos 99.3 3.8E-11 8.2E-16 89.1 9.9 97 7-110 114-214 (217)
37 PRK09517 multifunctional thiam 99.2 1.1E-10 2.4E-15 99.8 10.8 87 25-111 128-217 (755)
38 cd01568 QPRTase_NadC Quinolina 99.1 2E-10 4.2E-15 87.9 8.2 79 3-94 182-261 (269)
39 cd04727 pdxS PdxS is a subunit 99.1 8.6E-10 1.9E-14 84.7 10.9 97 9-111 119-248 (283)
40 PRK06552 keto-hydroxyglutarate 99.1 4.9E-10 1.1E-14 83.2 9.2 89 9-109 116-210 (213)
41 TIGR00343 pyridoxal 5'-phospha 99.1 1.2E-09 2.6E-14 84.1 10.4 100 6-111 118-251 (287)
42 PF02581 TMP-TENI: Thiamine mo 99.1 5.7E-10 1.2E-14 80.2 7.9 82 6-91 99-180 (180)
43 PRK07455 keto-hydroxyglutarate 99.1 1.1E-09 2.4E-14 79.7 9.0 77 7-94 110-186 (187)
44 PRK04180 pyridoxal biosynthesi 99.0 2.3E-09 5.1E-14 82.7 9.9 99 7-111 126-257 (293)
45 PRK08999 hypothetical protein; 99.0 3.5E-09 7.6E-14 81.5 9.0 83 6-92 230-312 (312)
46 PRK07428 nicotinate-nucleotide 99.0 4.1E-09 8.9E-14 81.5 8.9 79 5-95 199-278 (288)
47 cd00452 KDPG_aldolase KDPG and 98.9 5.6E-09 1.2E-13 75.7 8.3 76 6-93 101-176 (190)
48 cd01572 QPRTase Quinolinate ph 98.9 6.1E-09 1.3E-13 79.7 8.2 76 5-95 185-261 (268)
49 cd01573 modD_like ModD; Quinol 98.8 1.3E-08 2.7E-13 78.2 7.7 77 5-94 186-263 (272)
50 PRK08072 nicotinate-nucleotide 98.8 3.1E-08 6.7E-13 76.3 8.9 76 5-95 191-267 (277)
51 cd00331 IGPS Indole-3-glycerol 98.8 5.2E-08 1.1E-12 71.6 9.7 85 13-104 131-217 (217)
52 TIGR01949 AroFGH_arch predicte 98.8 2.9E-08 6.2E-13 75.2 8.5 75 24-110 168-249 (258)
53 TIGR00078 nadC nicotinate-nucl 98.8 2.7E-08 5.9E-13 76.1 7.8 73 5-93 181-254 (265)
54 PF01729 QRPTase_C: Quinolinat 98.8 1.8E-08 4E-13 72.5 6.3 80 5-95 83-162 (169)
55 PRK06806 fructose-bisphosphate 98.8 4.5E-08 9.7E-13 75.5 8.5 89 11-105 153-245 (281)
56 cd00958 DhnA Class I fructose- 98.8 6E-08 1.3E-12 72.0 8.6 73 24-108 155-234 (235)
57 PRK05742 nicotinate-nucleotide 98.7 8.6E-08 1.9E-12 73.8 8.8 76 5-95 192-268 (277)
58 cd00405 PRAI Phosphoribosylant 98.7 6.9E-08 1.5E-12 70.5 7.8 81 6-95 104-188 (203)
59 PRK00278 trpC indole-3-glycero 98.7 3.2E-07 7E-12 69.8 10.7 78 24-106 179-258 (260)
60 PRK00208 thiG thiazole synthas 98.7 4.5E-07 9.8E-12 68.8 11.1 83 24-110 143-226 (250)
61 cd04728 ThiG Thiazole synthase 98.7 5.3E-07 1.2E-11 68.3 11.1 83 24-110 143-226 (248)
62 PRK07226 fructose-bisphosphate 98.6 1.6E-07 3.4E-12 71.5 8.1 75 24-110 172-253 (267)
63 cd04729 NanE N-acetylmannosami 98.6 2.9E-07 6.2E-12 67.9 8.5 87 7-99 128-217 (219)
64 cd04730 NPD_like 2-Nitropropan 98.6 5.4E-07 1.2E-11 66.5 9.5 79 14-95 113-192 (236)
65 PRK07896 nicotinate-nucleotide 98.6 2.4E-07 5.3E-12 71.7 7.5 79 5-95 202-281 (289)
66 PRK01130 N-acetylmannosamine-6 98.6 5E-07 1.1E-11 66.7 8.9 85 11-100 127-214 (221)
67 PLN02591 tryptophan synthase 98.6 1.4E-06 3E-11 66.3 11.4 100 7-110 138-244 (250)
68 PRK05848 nicotinate-nucleotide 98.6 2.6E-07 5.6E-12 71.1 7.3 77 7-95 187-264 (273)
69 cd04722 TIM_phosphate_binding 98.5 9.4E-07 2E-11 61.9 9.4 84 2-89 116-200 (200)
70 TIGR01334 modD putative molybd 98.5 6.7E-07 1.5E-11 68.9 7.6 77 6-94 192-269 (277)
71 PRK07315 fructose-bisphosphate 98.5 1.3E-06 2.7E-11 67.8 8.9 91 11-107 154-249 (293)
72 PRK13305 sgbH 3-keto-L-gulonat 98.5 6.1E-07 1.3E-11 67.0 6.7 59 52-110 154-213 (218)
73 PRK08385 nicotinate-nucleotide 98.4 7.8E-07 1.7E-11 68.6 7.5 77 7-95 187-266 (278)
74 PRK04302 triosephosphate isome 98.4 3.8E-06 8.3E-11 62.3 10.8 84 24-107 133-221 (223)
75 PRK06096 molybdenum transport 98.4 2.2E-06 4.8E-11 66.3 9.3 77 5-94 192-269 (284)
76 PRK00230 orotidine 5'-phosphat 98.4 1.2E-06 2.5E-11 65.6 7.4 49 62-110 170-229 (230)
77 TIGR01182 eda Entner-Doudoroff 98.3 3.7E-06 8E-11 62.2 8.5 89 11-110 110-199 (204)
78 PRK05718 keto-hydroxyglutarate 98.3 5.7E-06 1.2E-10 61.5 9.0 88 11-109 117-205 (212)
79 PRK13111 trpA tryptophan synth 98.3 1.6E-05 3.4E-10 60.7 11.5 84 5-93 147-233 (258)
80 PRK06106 nicotinate-nucleotide 98.2 5.1E-06 1.1E-10 64.2 7.8 72 9-95 201-273 (281)
81 PRK06559 nicotinate-nucleotide 98.2 5.2E-06 1.1E-10 64.4 7.2 77 5-95 200-276 (290)
82 PRK06978 nicotinate-nucleotide 98.2 7E-06 1.5E-10 63.8 7.3 77 5-95 208-284 (294)
83 PRK06015 keto-hydroxyglutarate 98.2 1.6E-05 3.5E-10 58.7 8.6 89 11-110 106-195 (201)
84 COG0157 NadC Nicotinate-nucleo 98.2 1.1E-05 2.4E-10 62.1 7.8 75 9-95 195-269 (280)
85 PRK09016 quinolinate phosphori 98.1 8.1E-06 1.7E-10 63.5 7.1 76 5-94 211-286 (296)
86 TIGR01037 pyrD_sub1_fam dihydr 98.1 5.3E-05 1.1E-09 58.2 11.5 95 14-110 172-286 (300)
87 TIGR01740 pyrF orotidine 5'-ph 98.1 5.5E-06 1.2E-10 61.1 5.8 44 62-105 159-213 (213)
88 TIGR01859 fruc_bis_ald_ fructo 98.1 1.4E-05 3E-10 61.7 7.8 79 10-92 152-234 (282)
89 PRK06543 nicotinate-nucleotide 98.1 1E-05 2.2E-10 62.6 6.9 61 24-95 212-272 (281)
90 PRK07259 dihydroorotate dehydr 98.1 6.6E-05 1.4E-09 57.8 11.5 94 15-110 173-286 (301)
91 PLN02716 nicotinate-nucleotide 98.1 2E-05 4.2E-10 61.7 8.5 66 25-95 229-297 (308)
92 cd04740 DHOD_1B_like Dihydroor 98.1 0.0001 2.2E-09 56.5 12.3 72 38-110 210-283 (296)
93 PF04131 NanE: Putative N-acet 98.1 4.2E-05 9.1E-10 56.1 9.5 91 9-109 99-191 (192)
94 PRK07114 keto-hydroxyglutarate 98.1 2.3E-05 4.9E-10 58.8 8.0 73 11-95 121-195 (222)
95 PF01081 Aldolase: KDPG and KH 98.1 8.3E-06 1.8E-10 60.0 5.6 74 11-95 110-183 (196)
96 cd02810 DHOD_DHPD_FMN Dihydroo 98.0 5.5E-05 1.2E-09 57.7 9.4 76 24-99 188-284 (289)
97 PRK13585 1-(5-phosphoribosyl)- 98.0 6.6E-05 1.4E-09 55.8 9.7 80 11-96 150-230 (241)
98 COG3010 NanE Putative N-acetyl 98.0 0.00012 2.6E-09 54.5 10.4 92 9-110 134-228 (229)
99 PRK13585 1-(5-phosphoribosyl)- 98.0 5.1E-05 1.1E-09 56.4 8.3 81 10-96 32-113 (241)
100 COG0214 SNZ1 Pyridoxine biosyn 97.9 4.4E-05 9.5E-10 57.9 7.4 49 60-108 206-257 (296)
101 cd04732 HisA HisA. Phosphorib 97.9 9.5E-05 2.1E-09 54.5 8.6 82 9-96 28-110 (234)
102 PRK14114 1-(5-phosphoribosyl)- 97.9 0.0001 2.2E-09 55.7 8.7 84 10-100 30-114 (241)
103 cd02812 PcrB_like PcrB_like pr 97.9 4.6E-05 1E-09 57.0 6.3 76 13-94 134-210 (219)
104 TIGR00259 thylakoid_BtpA membr 97.9 0.00021 4.5E-09 54.7 10.0 81 24-111 170-255 (257)
105 TIGR00735 hisF imidazoleglycer 97.8 0.00014 3E-09 54.9 8.7 82 10-97 30-112 (254)
106 cd04738 DHOD_2_like Dihydrooro 97.8 0.0001 2.2E-09 57.7 8.0 93 4-97 206-319 (327)
107 PF00290 Trp_syntA: Tryptophan 97.8 0.00016 3.5E-09 55.3 8.7 100 6-110 146-253 (259)
108 PRK06801 hypothetical protein; 97.8 0.0003 6.5E-09 54.5 9.9 81 10-93 155-238 (286)
109 PRK00748 1-(5-phosphoribosyl)- 97.8 0.00019 4.1E-09 53.0 8.4 80 10-95 30-110 (233)
110 cd01571 NAPRTase_B Nicotinate 97.8 0.0001 2.2E-09 57.4 7.0 68 25-95 211-280 (302)
111 PRK02083 imidazole glycerol ph 97.8 0.00025 5.5E-09 53.3 8.9 81 10-96 30-111 (253)
112 CHL00162 thiG thiamin biosynth 97.7 0.00057 1.2E-08 52.3 10.7 80 25-109 158-239 (267)
113 cd04732 HisA HisA. Phosphorib 97.7 0.00029 6.3E-09 51.9 8.9 80 10-95 146-226 (234)
114 cd04731 HisF The cyclase subun 97.7 0.00047 1E-08 51.4 10.1 76 14-95 153-230 (243)
115 TIGR00007 phosphoribosylformim 97.7 0.0003 6.6E-09 51.9 8.8 79 11-95 29-108 (230)
116 cd04731 HisF The cyclase subun 97.7 0.00039 8.5E-09 51.8 9.0 81 11-97 28-109 (243)
117 cd02801 DUS_like_FMN Dihydrour 97.7 0.0002 4.4E-09 52.5 7.3 73 24-100 150-225 (231)
118 PRK11840 bifunctional sulfur c 97.7 0.0014 3E-08 51.7 12.1 77 29-109 220-299 (326)
119 PF03437 BtpA: BtpA family; I 97.7 0.0004 8.8E-09 53.0 8.8 77 24-108 171-252 (254)
120 cd02803 OYE_like_FMN_family Ol 97.6 0.0005 1.1E-08 53.2 9.3 74 24-101 240-324 (327)
121 TIGR03572 WbuZ glycosyl amidat 97.6 0.00062 1.4E-08 50.4 9.3 80 11-96 31-111 (232)
122 TIGR02129 hisA_euk phosphoribo 97.6 0.0009 2E-08 51.1 10.1 73 11-95 38-111 (253)
123 COG0159 TrpA Tryptophan syntha 97.6 0.00087 1.9E-08 51.5 9.9 83 6-93 153-238 (265)
124 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00055 1.2E-08 51.4 8.6 83 10-97 31-114 (234)
125 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00052 1.1E-08 51.4 8.3 75 11-92 31-106 (228)
126 PRK01033 imidazole glycerol ph 97.6 0.00063 1.4E-08 51.6 8.9 80 11-96 31-111 (258)
127 PRK04169 geranylgeranylglycery 97.6 0.00038 8.3E-09 52.5 7.3 56 49-107 173-230 (232)
128 PF05690 ThiG: Thiazole biosyn 97.6 0.00077 1.7E-08 51.1 8.8 81 24-109 143-225 (247)
129 PRK13586 1-(5-phosphoribosyl)- 97.5 0.00069 1.5E-08 50.9 8.5 80 10-96 30-110 (232)
130 cd04723 HisA_HisF Phosphoribos 97.5 0.00061 1.3E-08 50.9 8.2 78 11-95 147-225 (233)
131 TIGR03572 WbuZ glycosyl amidat 97.5 0.00096 2.1E-08 49.4 8.7 73 13-91 156-230 (232)
132 PLN02446 (5-phosphoribosyl)-5- 97.5 0.00094 2E-08 51.3 8.8 76 9-94 42-117 (262)
133 PRK01033 imidazole glycerol ph 97.5 0.00097 2.1E-08 50.6 8.8 76 12-93 154-232 (258)
134 PRK05286 dihydroorotate dehydr 97.5 0.00052 1.1E-08 54.2 7.5 107 3-110 214-342 (344)
135 PF00977 His_biosynth: Histidi 97.5 0.0004 8.7E-09 51.8 6.5 76 12-93 149-225 (229)
136 cd04739 DHOD_like Dihydroorota 97.5 0.0034 7.3E-08 49.2 11.7 103 7-111 170-291 (325)
137 PRK02083 imidazole glycerol ph 97.4 0.0017 3.7E-08 48.8 9.6 87 13-105 156-245 (253)
138 PRK01222 N-(5'-phosphoribosyl) 97.4 0.0014 3.1E-08 48.4 8.9 71 13-93 115-188 (210)
139 COG0135 TrpF Phosphoribosylant 97.4 0.0012 2.6E-08 49.1 8.4 80 6-94 104-189 (208)
140 PRK07565 dihydroorotate dehydr 97.4 0.0034 7.3E-08 49.2 11.3 102 7-110 172-292 (334)
141 PRK08662 nicotinate phosphorib 97.4 0.00053 1.2E-08 54.4 6.7 66 25-94 227-294 (343)
142 PRK14114 1-(5-phosphoribosyl)- 97.4 0.0014 3E-08 49.5 8.5 84 12-101 146-237 (241)
143 cd00516 PRTase_typeII Phosphor 97.4 0.0012 2.5E-08 50.3 8.1 36 59-94 238-273 (281)
144 PRK14024 phosphoribosyl isomer 97.4 0.0018 3.9E-08 48.6 8.7 80 11-97 33-113 (241)
145 TIGR00007 phosphoribosylformim 97.3 0.0019 4.2E-08 47.6 8.7 78 11-94 146-224 (230)
146 PRK06843 inosine 5-monophospha 97.3 0.002 4.3E-08 52.3 9.3 81 8-93 201-290 (404)
147 cd04741 DHOD_1A_like Dihydroor 97.3 0.0043 9.3E-08 47.9 10.8 94 4-97 161-282 (294)
148 cd02940 DHPD_FMN Dihydropyrimi 97.3 0.0029 6.3E-08 48.9 9.6 61 37-97 228-291 (299)
149 cd04735 OYE_like_4_FMN Old yel 97.3 0.0013 2.8E-08 52.0 7.4 98 2-102 217-327 (353)
150 PF00218 IGPS: Indole-3-glycer 97.3 0.0012 2.7E-08 50.4 7.0 76 24-104 177-254 (254)
151 cd02809 alpha_hydroxyacid_oxid 97.3 0.0045 9.8E-08 47.8 10.2 77 12-92 182-260 (299)
152 cd04723 HisA_HisF Phosphoribos 97.2 0.0036 7.7E-08 46.8 9.3 78 10-94 35-113 (233)
153 PRK08318 dihydropyrimidine deh 97.2 0.0036 7.8E-08 50.4 9.9 102 7-109 175-305 (420)
154 PRK13587 1-(5-phosphoribosyl)- 97.2 0.0021 4.5E-08 48.3 7.8 75 13-93 151-226 (234)
155 PRK10415 tRNA-dihydrouridine s 97.2 0.0043 9.4E-08 48.5 9.9 78 16-98 154-234 (321)
156 PF01884 PcrB: PcrB family; I 97.2 0.00048 1E-08 52.0 4.3 58 49-106 171-229 (230)
157 PLN02617 imidazole glycerol ph 97.2 0.0028 6E-08 53.1 9.2 83 9-94 266-360 (538)
158 PRK00748 1-(5-phosphoribosyl)- 97.2 0.0038 8.2E-08 46.0 8.8 77 12-94 148-226 (233)
159 KOG1606 Stationary phase-induc 97.2 0.0011 2.4E-08 49.9 5.8 48 61-108 208-258 (296)
160 PF00977 His_biosynth: Histidi 97.2 0.0011 2.5E-08 49.4 5.9 83 9-97 28-111 (229)
161 TIGR01768 GGGP-family geranylg 97.1 0.0013 2.9E-08 49.3 5.9 53 39-94 161-214 (223)
162 PRK06843 inosine 5-monophospha 97.1 0.0049 1.1E-07 50.0 9.2 79 2-88 143-222 (404)
163 cd04725 OMP_decarboxylase_like 97.1 0.0035 7.6E-08 46.4 7.8 41 63-103 165-215 (216)
164 PRK04128 1-(5-phosphoribosyl)- 97.1 0.0025 5.5E-08 47.7 7.0 74 11-95 144-218 (228)
165 PLN02274 inosine-5'-monophosph 97.1 0.0052 1.1E-07 51.1 9.3 82 8-94 296-386 (505)
166 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.0062 1.3E-07 46.0 8.8 83 12-100 151-238 (243)
167 TIGR00735 hisF imidazoleglycer 97.0 0.0099 2.1E-07 44.9 9.8 76 14-95 159-236 (254)
168 PF00697 PRAI: N-(5'phosphorib 97.0 0.0018 3.8E-08 47.3 5.5 67 24-94 115-182 (197)
169 TIGR03151 enACPred_II putative 97.0 0.0062 1.4E-07 47.5 8.8 77 11-93 117-195 (307)
170 PLN02826 dihydroorotate dehydr 97.0 0.014 3.1E-07 47.3 10.8 88 5-93 267-375 (409)
171 PF01180 DHO_dh: Dihydroorotat 97.0 0.0017 3.7E-08 49.9 5.2 60 38-97 221-283 (295)
172 TIGR01769 GGGP geranylgeranylg 96.9 0.0021 4.6E-08 47.7 5.1 73 9-88 129-205 (205)
173 TIGR01036 pyrD_sub2 dihydrooro 96.9 0.0037 7.9E-08 49.3 6.6 94 4-98 214-328 (335)
174 PRK10550 tRNA-dihydrouridine s 96.9 0.006 1.3E-07 47.7 7.7 78 15-97 152-233 (312)
175 PRK08227 autoinducer 2 aldolas 96.9 0.0055 1.2E-07 47.1 7.4 60 50-110 183-248 (264)
176 COG0134 TrpC Indole-3-glycerol 96.9 0.0091 2E-07 45.7 8.4 85 14-105 167-253 (254)
177 COG1830 FbaB DhnA-type fructos 96.8 0.0031 6.7E-08 48.4 5.7 50 61-110 203-259 (265)
178 TIGR00736 nifR3_rel_arch TIM-b 96.8 0.0095 2.1E-07 44.9 8.1 74 15-94 152-226 (231)
179 COG0800 Eda 2-keto-3-deoxy-6-p 96.8 0.0096 2.1E-07 44.4 7.9 44 51-94 144-187 (211)
180 PRK13586 1-(5-phosphoribosyl)- 96.8 0.0073 1.6E-07 45.4 7.4 75 12-93 148-223 (232)
181 TIGR01303 IMP_DH_rel_1 IMP deh 96.8 0.01 2.3E-07 49.0 8.7 78 3-88 216-294 (475)
182 PRK02506 dihydroorotate dehydr 96.7 0.0037 8E-08 48.7 5.7 73 39-111 219-295 (310)
183 TIGR02151 IPP_isom_2 isopenten 96.7 0.013 2.7E-07 46.2 8.7 80 11-93 191-288 (333)
184 TIGR00737 nifR3_yhdG putative 96.7 0.014 3.1E-07 45.3 8.9 72 24-100 159-234 (319)
185 cd00381 IMPDH IMPDH: The catal 96.7 0.011 2.5E-07 46.3 8.4 81 11-94 144-232 (325)
186 PRK11815 tRNA-dihydrouridine s 96.7 0.013 2.8E-07 46.1 8.7 74 24-98 163-243 (333)
187 PRK14024 phosphoribosyl isomer 96.7 0.02 4.4E-07 42.9 9.3 83 13-101 149-236 (241)
188 PF00215 OMPdecase: Orotidine 96.7 0.0012 2.7E-08 48.8 2.6 43 62-104 183-226 (226)
189 PF03060 NMO: Nitronate monoox 96.7 0.018 4E-07 45.1 9.3 81 11-96 144-228 (330)
190 COG0284 PyrF Orotidine-5'-phos 96.7 0.051 1.1E-06 41.2 11.1 105 5-110 93-236 (240)
191 PTZ00314 inosine-5'-monophosph 96.7 0.015 3.3E-07 48.2 9.0 79 2-88 231-310 (495)
192 TIGR01302 IMP_dehydrog inosine 96.7 0.018 3.9E-07 47.1 9.3 79 13-94 276-362 (450)
193 COG0167 PyrD Dihydroorotate de 96.6 0.011 2.5E-07 46.4 7.7 75 37-111 217-295 (310)
194 TIGR01919 hisA-trpF 1-(5-phosp 96.6 0.026 5.6E-07 42.7 9.3 80 11-97 32-112 (243)
195 PF00478 IMPDH: IMP dehydrogen 96.6 0.022 4.8E-07 45.5 9.1 79 2-88 98-177 (352)
196 TIGR00734 hisAF_rel hisA/hisF 96.6 0.027 5.8E-07 41.9 9.0 62 28-93 156-218 (221)
197 PRK11572 copper homeostasis pr 96.6 0.013 2.8E-07 44.7 7.4 70 11-88 129-198 (248)
198 PF06073 DUF934: Bacterial pro 96.6 0.089 1.9E-06 35.5 10.7 88 4-105 1-90 (110)
199 cd02933 OYE_like_FMN Old yello 96.6 0.021 4.5E-07 45.1 8.8 81 16-101 246-327 (338)
200 PRK05437 isopentenyl pyrophosp 96.6 0.021 4.7E-07 45.3 8.9 81 11-94 198-296 (352)
201 PRK13958 N-(5'-phosphoribosyl) 96.6 0.016 3.4E-07 42.8 7.7 67 16-92 116-186 (207)
202 PRK07188 nicotinate phosphorib 96.6 0.0077 1.7E-07 48.0 6.3 52 43-94 261-316 (352)
203 TIGR01302 IMP_dehydrog inosine 96.5 0.026 5.6E-07 46.2 9.3 78 3-88 215-293 (450)
204 PLN02274 inosine-5'-monophosph 96.5 0.033 7.2E-07 46.3 9.9 79 2-88 238-317 (505)
205 cd02808 GltS_FMN Glutamate syn 96.5 0.038 8.2E-07 44.5 9.9 88 4-92 218-318 (392)
206 cd02071 MM_CoA_mut_B12_BD meth 96.5 0.068 1.5E-06 36.0 9.8 89 6-105 32-121 (122)
207 cd04736 MDH_FMN Mandelate dehy 96.4 0.05 1.1E-06 43.6 10.3 93 12-109 246-345 (361)
208 PLN02446 (5-phosphoribosyl)-5- 96.4 0.051 1.1E-06 41.8 10.0 82 13-100 166-253 (262)
209 PRK05500 bifunctional orotidin 96.4 0.035 7.5E-07 46.0 9.5 106 4-113 118-263 (477)
210 PLN02535 glycolate oxidase 96.4 0.082 1.8E-06 42.4 11.4 76 13-92 234-311 (364)
211 cd03332 LMO_FMN L-Lactate 2-mo 96.4 0.05 1.1E-06 43.9 10.1 95 11-109 262-364 (383)
212 COG2022 ThiG Uncharacterized e 96.4 0.032 7E-07 42.4 8.3 99 4-109 130-232 (262)
213 PRK05567 inosine 5'-monophosph 96.3 0.03 6.4E-07 46.2 8.7 77 3-88 219-297 (486)
214 COG0106 HisA Phosphoribosylfor 96.3 0.065 1.4E-06 40.8 9.8 89 11-105 148-239 (241)
215 PRK13523 NADPH dehydrogenase N 96.3 0.042 9.2E-07 43.4 9.1 80 18-102 234-319 (337)
216 PRK13803 bifunctional phosphor 96.3 0.041 9E-07 46.7 9.5 73 13-94 119-196 (610)
217 PRK05458 guanosine 5'-monophos 96.3 0.056 1.2E-06 42.8 9.6 81 8-93 147-235 (326)
218 PRK09427 bifunctional indole-3 96.3 0.041 9E-07 45.3 9.2 62 24-93 373-434 (454)
219 PRK08649 inosine 5-monophospha 96.3 0.014 3E-07 46.8 6.3 78 13-93 198-290 (368)
220 PLN02495 oxidoreductase, actin 96.3 0.022 4.7E-07 46.0 7.4 72 39-110 244-323 (385)
221 cd04733 OYE_like_2_FMN Old yel 96.2 0.041 9E-07 43.1 8.8 52 49-101 282-335 (338)
222 PRK06852 aldolase; Validated 96.2 0.021 4.5E-07 44.8 7.0 62 49-110 219-289 (304)
223 PRK13802 bifunctional indole-3 96.2 0.041 8.8E-07 47.5 9.2 79 24-107 179-259 (695)
224 PTZ00314 inosine-5'-monophosph 96.2 0.038 8.2E-07 45.9 8.7 76 14-93 294-378 (495)
225 PRK05458 guanosine 5'-monophos 96.1 0.055 1.2E-06 42.8 8.8 79 3-88 88-168 (326)
226 PRK05567 inosine 5'-monophosph 96.1 0.04 8.6E-07 45.4 8.3 79 13-94 280-366 (486)
227 COG0106 HisA Phosphoribosylfor 96.1 0.074 1.6E-06 40.5 9.0 82 10-97 31-113 (241)
228 PRK02261 methylaspartate mutas 96.1 0.22 4.8E-06 34.4 10.8 92 5-108 35-134 (137)
229 cd02911 arch_FMN Archeal FMN-b 96.0 0.098 2.1E-06 39.2 9.6 68 13-90 154-222 (233)
230 PLN02363 phosphoribosylanthran 96.0 0.076 1.7E-06 40.6 8.9 64 24-92 168-232 (256)
231 COG0434 SgcQ Predicted TIM-bar 95.9 0.13 2.9E-06 39.2 9.7 88 14-110 167-259 (263)
232 cd02811 IDI-2_FMN Isopentenyl- 95.9 0.086 1.9E-06 41.4 9.0 80 11-93 190-289 (326)
233 PRK05096 guanosine 5'-monophos 95.9 0.076 1.6E-06 42.3 8.7 70 13-88 110-179 (346)
234 TIGR01305 GMP_reduct_1 guanosi 95.9 0.075 1.6E-06 42.3 8.6 69 13-88 109-178 (343)
235 TIGR00640 acid_CoA_mut_C methy 95.9 0.33 7.1E-06 33.4 10.9 89 9-109 38-128 (132)
236 PRK14565 triosephosphate isome 95.8 0.063 1.4E-06 40.7 7.8 74 30-103 155-233 (237)
237 PRK10605 N-ethylmaleimide redu 95.8 0.087 1.9E-06 42.0 8.8 73 24-102 261-335 (362)
238 cd02067 B12-binding B12 bindin 95.7 0.15 3.3E-06 33.7 8.7 77 5-87 31-108 (119)
239 COG0107 HisF Imidazoleglycerol 95.7 0.12 2.7E-06 39.3 8.9 82 9-96 29-111 (256)
240 cd04737 LOX_like_FMN L-Lactate 95.7 0.21 4.6E-06 39.8 10.7 83 24-109 241-332 (351)
241 COG1646 Predicted phosphate-bi 95.7 0.038 8.1E-07 41.9 6.0 52 38-95 175-227 (240)
242 PF03932 CutC: CutC family; I 95.7 0.033 7E-07 41.3 5.6 66 12-85 129-196 (201)
243 cd02922 FCB2_FMN Flavocytochro 95.7 0.21 4.6E-06 39.7 10.6 84 6-93 217-305 (344)
244 PLN02979 glycolate oxidase 95.6 0.24 5.3E-06 39.8 10.7 93 13-109 234-334 (366)
245 TIGR02708 L_lactate_ox L-lacta 95.6 0.23 5E-06 39.9 10.6 93 13-109 239-339 (367)
246 PF04481 DUF561: Protein of un 95.6 0.093 2E-06 39.6 7.7 84 24-110 144-236 (242)
247 PRK13957 indole-3-glycerol-pho 95.6 0.12 2.6E-06 39.4 8.5 75 24-104 170-246 (247)
248 COG0042 tRNA-dihydrouridine sy 95.6 0.11 2.3E-06 40.9 8.4 80 14-97 155-237 (323)
249 cd00331 IGPS Indole-3-glycerol 95.4 0.094 2E-06 38.3 7.4 76 9-93 30-106 (217)
250 PRK11197 lldD L-lactate dehydr 95.4 0.15 3.3E-06 41.1 8.9 95 11-109 254-356 (381)
251 cd02931 ER_like_FMN Enoate red 95.4 0.13 2.7E-06 41.3 8.4 51 50-101 296-348 (382)
252 PLN02460 indole-3-glycerol-pho 95.4 0.14 3E-06 40.8 8.5 79 25-105 251-334 (338)
253 PRK07807 inosine 5-monophospha 95.4 0.087 1.9E-06 43.6 7.6 80 8-93 275-364 (479)
254 TIGR02814 pfaD_fam PfaD family 95.4 0.11 2.5E-06 42.7 8.2 33 60-92 224-257 (444)
255 PRK07107 inosine 5-monophospha 95.3 0.057 1.2E-06 44.9 6.5 77 14-93 296-386 (502)
256 cd00381 IMPDH IMPDH: The catal 95.3 0.22 4.7E-06 39.2 9.4 67 14-88 97-163 (325)
257 cd02932 OYE_YqiM_FMN Old yello 95.3 0.044 9.5E-07 42.9 5.5 52 48-100 279-332 (336)
258 TIGR02129 hisA_euk phosphoribo 95.3 0.14 3.1E-06 39.2 8.1 73 14-93 162-237 (253)
259 PF01645 Glu_synthase: Conserv 95.3 0.2 4.3E-06 40.3 9.2 88 2-90 205-305 (368)
260 cd04742 NPD_FabD 2-Nitropropan 95.3 0.11 2.5E-06 42.3 7.9 67 25-92 177-252 (418)
261 COG0325 Predicted enzyme with 95.3 0.071 1.5E-06 40.2 6.2 84 11-96 137-227 (228)
262 cd04747 OYE_like_5_FMN Old yel 95.3 0.22 4.8E-06 39.8 9.4 75 20-101 244-341 (361)
263 PRK08185 hypothetical protein; 95.2 0.31 6.7E-06 37.9 9.9 82 10-93 148-233 (283)
264 cd04734 OYE_like_3_FMN Old yel 95.2 0.15 3.3E-06 40.2 8.2 52 49-101 275-328 (343)
265 TIGR00734 hisAF_rel hisA/hisF 95.1 0.15 3.2E-06 37.9 7.6 79 9-96 35-116 (221)
266 PF01070 FMN_dh: FMN-dependent 95.1 0.13 2.7E-06 41.1 7.6 78 11-92 234-313 (356)
267 KOG2335 tRNA-dihydrouridine sy 95.0 0.14 3E-06 41.0 7.5 73 19-92 163-237 (358)
268 TIGR01306 GMP_reduct_2 guanosi 94.9 0.24 5.3E-06 39.1 8.6 78 12-93 147-232 (321)
269 TIGR00742 yjbN tRNA dihydrouri 94.9 0.32 7E-06 38.1 9.2 70 24-97 153-232 (318)
270 KOG2550 IMP dehydrogenase/GMP 94.8 0.2 4.3E-06 41.1 8.0 79 3-88 242-320 (503)
271 PLN02411 12-oxophytodienoate r 94.8 0.077 1.7E-06 42.7 5.7 51 52-103 306-357 (391)
272 PLN02493 probable peroxisomal 94.7 0.59 1.3E-05 37.6 10.5 93 13-109 235-335 (367)
273 COG2070 Dioxygenases related t 94.7 0.11 2.4E-06 41.1 6.2 70 24-93 146-218 (336)
274 PRK07107 inosine 5-monophospha 94.6 0.21 4.5E-06 41.7 7.9 78 2-88 233-312 (502)
275 cd02930 DCR_FMN 2,4-dienoyl-Co 94.6 0.16 3.5E-06 40.1 6.9 50 50-100 267-318 (353)
276 cd02929 TMADH_HD_FMN Trimethyl 94.6 0.27 6E-06 39.2 8.2 52 49-101 279-332 (370)
277 COG0149 TpiA Triosephosphate i 94.5 0.16 3.4E-06 38.9 6.3 48 59-106 201-249 (251)
278 PF02310 B12-binding: B12 bind 94.4 0.46 1E-05 31.0 7.8 76 7-89 34-112 (121)
279 cd00945 Aldolase_Class_I Class 94.4 0.097 2.1E-06 36.8 4.8 41 48-88 159-201 (201)
280 PRK14567 triosephosphate isome 94.3 0.22 4.7E-06 38.2 6.8 74 30-103 160-246 (253)
281 COG2185 Sbm Methylmalonyl-CoA 94.0 1.3 2.8E-05 31.2 9.8 88 10-110 50-139 (143)
282 PRK09427 bifunctional indole-3 94.0 0.52 1.1E-05 38.9 8.9 77 24-106 178-256 (454)
283 TIGR01304 IMP_DH_rel_2 IMP deh 94.0 0.24 5.1E-06 39.9 6.7 35 60-94 255-290 (369)
284 cd06822 PLPDE_III_YBL036c_euk 93.9 0.12 2.7E-06 38.7 4.8 79 14-93 141-227 (227)
285 TIGR01501 MthylAspMutase methy 93.9 1.4 3.1E-05 30.5 10.7 90 7-108 35-132 (134)
286 TIGR01306 GMP_reduct_2 guanosi 93.9 0.81 1.8E-05 36.2 9.5 68 14-88 97-165 (321)
287 KOG0538 Glycolate oxidase [Ene 93.9 1 2.2E-05 35.8 9.8 95 11-110 233-335 (363)
288 TIGR01303 IMP_DH_rel_1 IMP deh 93.8 0.39 8.5E-06 39.8 7.9 77 12-93 276-362 (475)
289 PRK14905 triosephosphate isome 93.6 0.46 1E-05 38.0 7.8 78 30-107 170-261 (355)
290 COG3142 CutC Uncharacterized p 93.4 0.26 5.7E-06 37.4 5.6 67 12-86 130-198 (241)
291 cd00311 TIM Triosephosphate is 93.3 0.25 5.4E-06 37.4 5.6 39 59-97 198-237 (242)
292 PF00478 IMPDH: IMP dehydrogen 93.0 0.76 1.6E-05 36.8 8.0 75 14-93 161-245 (352)
293 TIGR01305 GMP_reduct_1 guanosi 92.9 0.84 1.8E-05 36.5 8.1 81 8-92 157-245 (343)
294 KOG4175 Tryptophan synthase al 92.9 0.62 1.3E-05 35.1 6.9 82 8-93 156-240 (268)
295 cd02069 methionine_synthase_B1 92.5 1.4 3E-05 32.6 8.5 86 6-105 121-210 (213)
296 KOG3055 Phosphoribosylformimin 92.5 0.36 7.8E-06 36.1 5.2 44 63-106 85-129 (263)
297 KOG1799 Dihydropyrimidine dehy 92.3 0.24 5.2E-06 40.0 4.3 75 35-109 331-408 (471)
298 PRK05437 isopentenyl pyrophosp 92.2 1.5 3.3E-05 34.8 8.9 74 13-89 137-218 (352)
299 PRK05096 guanosine 5'-monophos 92.2 1.1 2.3E-05 35.9 7.9 82 8-93 158-247 (346)
300 PRK00042 tpiA triosephosphate 92.0 0.59 1.3E-05 35.6 6.0 45 59-103 202-247 (250)
301 PLN02623 pyruvate kinase 91.8 2.1 4.5E-05 36.5 9.6 97 11-111 330-440 (581)
302 PLN02429 triosephosphate isome 91.7 0.84 1.8E-05 36.0 6.8 73 31-103 221-307 (315)
303 cd00959 DeoC 2-deoxyribose-5-p 91.4 0.74 1.6E-05 33.5 5.9 56 24-85 143-200 (203)
304 PF01207 Dus: Dihydrouridine s 91.3 0.8 1.7E-05 35.6 6.3 75 16-95 143-220 (309)
305 cd02811 IDI-2_FMN Isopentenyl- 91.2 2.1 4.5E-05 33.6 8.6 75 12-89 128-210 (326)
306 COG1902 NemA NADH:flavin oxido 91.1 4.9 0.00011 32.3 10.7 99 3-103 219-333 (363)
307 COG1411 Uncharacterized protei 91.1 2.2 4.7E-05 32.0 8.0 86 10-101 137-223 (229)
308 COG1692 Calcineurin-like phosp 90.7 1.3 2.9E-05 34.0 6.8 64 36-103 10-81 (266)
309 PLN02617 imidazole glycerol ph 90.6 4.8 0.0001 34.0 10.6 73 13-91 441-515 (538)
310 PRK09250 fructose-bisphosphate 90.6 0.96 2.1E-05 36.2 6.2 39 60-98 281-328 (348)
311 PRK05718 keto-hydroxyglutarate 90.5 0.74 1.6E-05 34.2 5.2 55 25-88 40-94 (212)
312 cd02072 Glm_B12_BD B12 binding 90.5 4.3 9.3E-05 28.0 10.4 87 7-105 33-127 (128)
313 PF01791 DeoC: DeoC/LacD famil 90.3 0.88 1.9E-05 33.7 5.6 65 24-93 158-235 (236)
314 PRK09426 methylmalonyl-CoA mut 90.1 3.8 8.3E-05 35.7 9.9 86 12-109 622-708 (714)
315 PRK15492 triosephosphate isome 90.1 1.3 2.9E-05 33.9 6.4 71 30-100 169-253 (260)
316 PF00724 Oxidored_FMN: NADH:fl 90.1 1.8 3.8E-05 34.1 7.3 51 51-102 283-335 (341)
317 PRK07807 inosine 5-monophospha 90.1 1.7 3.8E-05 36.0 7.5 67 14-88 230-296 (479)
318 PTZ00333 triosephosphate isome 90.0 2.2 4.7E-05 32.7 7.5 71 30-101 164-248 (255)
319 cd02070 corrinoid_protein_B12- 89.8 5.1 0.00011 29.0 9.1 73 6-86 115-189 (201)
320 cd04743 NPD_PKS 2-Nitropropane 89.2 2.5 5.4E-05 33.5 7.5 84 11-96 111-211 (320)
321 TIGR00126 deoC deoxyribose-pho 89.0 1 2.3E-05 33.4 5.0 56 24-85 144-201 (211)
322 PRK11475 DNA-binding transcrip 88.9 7.4 0.00016 28.5 11.1 73 25-109 37-114 (207)
323 cd08207 RLP_NonPhot Ribulose b 88.9 4.2 9.1E-05 33.2 8.8 84 24-111 293-386 (406)
324 PF04476 DUF556: Protein of un 88.6 3.3 7.2E-05 31.5 7.5 84 24-108 143-234 (235)
325 PF13277 YmdB: YmdB-like prote 88.4 0.76 1.6E-05 35.3 4.0 55 48-103 16-78 (253)
326 PRK08649 inosine 5-monophospha 88.3 4.9 0.00011 32.3 8.7 71 12-88 143-215 (368)
327 cd04726 KGPDC_HPS 3-Keto-L-gul 88.2 2 4.4E-05 30.6 6.0 77 2-88 2-84 (202)
328 TIGR00419 tim triosephosphate 88.0 1.4 3.1E-05 32.6 5.2 64 31-94 133-204 (205)
329 TIGR01417 PTS_I_fam phosphoeno 88.0 2.8 6E-05 35.5 7.5 86 2-90 424-527 (565)
330 PRK06464 phosphoenolpyruvate s 88.0 2.3 5.1E-05 37.4 7.2 85 3-90 672-775 (795)
331 cd04824 eu_ALAD_PBGS_cysteine_ 87.9 2.4 5.2E-05 33.6 6.5 72 7-88 219-311 (320)
332 PRK10128 2-keto-3-deoxy-L-rham 87.9 9.5 0.00021 29.3 9.8 78 12-91 157-240 (267)
333 cd00956 Transaldolase_FSA Tran 87.7 3.9 8.4E-05 30.2 7.3 47 60-106 157-207 (211)
334 PRK08255 salicylyl-CoA 5-hydro 87.6 4.4 9.5E-05 35.3 8.6 45 52-97 680-726 (765)
335 PRK08508 biotin synthase; Prov 87.4 2.5 5.3E-05 32.4 6.4 81 25-106 56-145 (279)
336 PRK02227 hypothetical protein; 87.4 4.7 0.0001 30.7 7.7 94 15-110 135-235 (238)
337 PRK09196 fructose-1,6-bisphosp 87.3 7 0.00015 31.3 8.9 82 10-92 172-281 (347)
338 TIGR02320 PEP_mutase phosphoen 86.8 10 0.00022 29.5 9.5 42 52-93 203-245 (285)
339 COG0069 GltB Glutamate synthas 86.3 3.3 7.1E-05 34.6 6.8 88 2-90 305-405 (485)
340 PLN02428 lipoic acid synthase 86.2 5.2 0.00011 32.1 7.7 69 14-88 137-212 (349)
341 PRK00507 deoxyribose-phosphate 86.2 3.9 8.4E-05 30.6 6.6 59 24-88 148-208 (221)
342 PRK07565 dihydroorotate dehydr 86.1 8.5 0.00019 30.1 8.9 87 4-92 105-201 (334)
343 PRK13111 trpA tryptophan synth 86.1 7 0.00015 29.8 8.1 76 11-88 27-124 (258)
344 TIGR02370 pyl_corrinoid methyl 86.0 6.6 0.00014 28.5 7.7 73 6-86 117-191 (197)
345 TIGR01304 IMP_DH_rel_2 IMP deh 85.9 9.1 0.0002 30.8 9.0 77 6-89 138-217 (369)
346 cd04737 LOX_like_FMN L-Lactate 85.7 5.8 0.00012 31.7 7.8 41 47-88 209-249 (351)
347 TIGR00045 glycerate kinase. Th 85.6 15 0.00032 29.8 10.1 87 15-109 276-362 (375)
348 PRK01362 putative translaldola 85.5 7.4 0.00016 29.0 7.8 83 24-110 121-211 (214)
349 TIGR01521 FruBisAldo_II_B fruc 85.5 12 0.00025 30.1 9.3 82 10-92 170-279 (347)
350 TIGR02127 pyrF_sub2 orotidine 85.4 2.6 5.6E-05 32.3 5.5 33 70-102 224-258 (261)
351 TIGR03239 GarL 2-dehydro-3-deo 85.4 14 0.0003 28.0 9.5 77 12-90 150-232 (249)
352 cd00452 KDPG_aldolase KDPG and 85.4 9.4 0.0002 27.3 8.2 65 14-89 20-84 (190)
353 cd03174 DRE_TIM_metallolyase D 85.2 8.9 0.00019 28.3 8.2 64 24-88 31-94 (265)
354 TIGR00676 fadh2 5,10-methylene 85.2 7.1 0.00015 29.8 7.8 80 24-105 85-180 (272)
355 PF00121 TIM: Triosephosphate 85.1 1.9 4E-05 32.7 4.5 69 30-98 159-241 (244)
356 TIGR01182 eda Entner-Doudoroff 85.0 2.8 6E-05 31.1 5.3 44 45-88 44-87 (204)
357 PRK07998 gatY putative fructos 84.9 13 0.00029 28.9 9.3 78 10-92 152-233 (283)
358 PRK12857 fructose-1,6-bisphosp 84.8 15 0.00033 28.5 9.6 79 10-92 154-236 (284)
359 COG3749 Uncharacterized protei 84.7 2.7 5.9E-05 30.2 4.9 77 2-88 54-132 (167)
360 PRK07084 fructose-bisphosphate 84.6 14 0.00031 29.3 9.4 82 10-92 163-272 (321)
361 TIGR00167 cbbA ketose-bisphosp 84.1 18 0.00039 28.1 10.1 81 9-92 156-240 (288)
362 TIGR01418 PEP_synth phosphoeno 83.9 4.2 9.2E-05 35.7 6.8 85 3-90 665-768 (782)
363 cd00429 RPE Ribulose-5-phospha 83.8 12 0.00026 26.5 8.2 93 6-105 8-102 (211)
364 PRK06015 keto-hydroxyglutarate 83.7 3.3 7.1E-05 30.6 5.2 44 45-88 40-83 (201)
365 COG1891 Uncharacterized protei 83.5 4.3 9.3E-05 30.1 5.6 68 24-93 143-213 (235)
366 PRK08444 hypothetical protein; 83.4 4.9 0.00011 32.0 6.5 65 24-92 95-173 (353)
367 TIGR01858 tag_bisphos_ald clas 83.3 17 0.00038 28.2 9.3 79 10-92 152-234 (282)
368 TIGR00262 trpA tryptophan synt 83.3 15 0.00032 27.9 8.8 77 11-89 25-123 (256)
369 KOG3157 Proline synthetase co- 83.3 4.5 9.7E-05 30.6 5.8 73 24-98 160-240 (244)
370 PRK08610 fructose-bisphosphate 83.1 20 0.00043 27.9 9.7 79 10-92 155-237 (286)
371 PRK09195 gatY tagatose-bisphos 83.1 19 0.0004 28.0 9.4 79 10-92 154-236 (284)
372 PRK12737 gatY tagatose-bisphos 82.7 20 0.00044 27.8 9.5 79 10-92 154-236 (284)
373 cd02068 radical_SAM_B12_BD B12 82.7 11 0.00025 24.9 8.0 58 24-88 38-97 (127)
374 PF01081 Aldolase: KDPG and KH 82.5 3.2 7E-05 30.5 4.8 44 45-88 44-87 (196)
375 PF01116 F_bP_aldolase: Fructo 82.4 7.8 0.00017 30.1 7.1 82 10-92 154-239 (287)
376 TIGR02151 IPP_isom_2 isopenten 82.1 4.7 0.0001 31.7 5.9 43 46-89 166-211 (333)
377 COG1304 idi Isopentenyl diphos 82.0 4.3 9.3E-05 32.6 5.6 66 25-92 239-306 (360)
378 PLN02561 triosephosphate isome 82.0 14 0.0003 28.3 8.2 64 30-93 161-238 (253)
379 COG3836 HpcH 2,4-dihydroxyhept 81.9 7.4 0.00016 29.9 6.6 83 7-90 151-238 (255)
380 PRK10643 DNA-binding transcrip 81.9 14 0.00031 25.5 10.2 74 24-109 43-117 (222)
381 PRK12581 oxaloacetate decarbox 81.8 3.3 7.1E-05 34.4 5.1 90 12-106 33-143 (468)
382 cd02922 FCB2_FMN Flavocytochro 81.6 13 0.00029 29.5 8.3 61 46-107 200-264 (344)
383 KOG4201 Anthranilate synthase 81.5 4.4 9.5E-05 30.9 5.2 47 60-106 237-284 (289)
384 PRK11613 folP dihydropteroate 81.5 8.3 0.00018 29.9 6.9 74 14-91 42-120 (282)
385 PLN02493 probable peroxisomal 81.5 4.1 8.8E-05 32.9 5.4 42 46-88 211-252 (367)
386 PRK12738 kbaY tagatose-bisphos 81.4 23 0.0005 27.5 10.2 79 10-92 154-236 (286)
387 TIGR03326 rubisco_III ribulose 81.3 22 0.00047 29.2 9.5 84 24-111 297-389 (412)
388 PF08029 HisG_C: HisG, C-termi 81.3 5.4 0.00012 24.9 4.8 64 3-88 6-70 (75)
389 cd07939 DRE_TIM_NifV Streptomy 81.1 13 0.00029 27.9 7.9 83 24-113 32-121 (259)
390 cd00408 DHDPS-like Dihydrodipi 80.9 17 0.00037 27.3 8.4 82 24-109 30-120 (281)
391 cd04736 MDH_FMN Mandelate dehy 80.8 4.8 0.0001 32.4 5.5 41 47-88 224-264 (361)
392 PRK13399 fructose-1,6-bisphosp 80.8 21 0.00046 28.6 9.1 82 10-92 172-281 (347)
393 cd00959 DeoC 2-deoxyribose-5-p 80.7 15 0.00032 26.6 7.8 76 14-92 73-155 (203)
394 PF02254 TrkA_N: TrkA-N domain 80.7 8.3 0.00018 24.7 5.9 55 24-87 61-115 (116)
395 cd07948 DRE_TIM_HCS Saccharomy 80.6 23 0.0005 27.0 9.0 97 7-112 19-122 (262)
396 cd03332 LMO_FMN L-Lactate 2-mo 80.6 4.7 0.0001 32.7 5.5 42 46-88 240-281 (383)
397 PTZ00413 lipoate synthase; Pro 80.5 7.1 0.00015 31.9 6.4 82 24-106 192-286 (398)
398 PLN02979 glycolate oxidase 80.4 4.7 0.0001 32.5 5.4 42 46-88 210-251 (366)
399 COG2197 CitB Response regulato 80.0 21 0.00045 26.1 10.5 73 24-108 45-118 (211)
400 TIGR01163 rpe ribulose-phospha 79.9 14 0.0003 26.3 7.3 73 11-89 12-87 (210)
401 cd00377 ICL_PEPM Members of th 79.9 18 0.00038 27.2 8.1 102 5-110 12-136 (243)
402 cd00947 TBP_aldolase_IIB Tagat 79.8 26 0.00057 27.1 9.6 79 10-92 147-230 (276)
403 PRK00278 trpC indole-3-glycero 79.6 25 0.00053 26.7 9.7 73 13-94 73-146 (260)
404 TIGR00510 lipA lipoate synthas 79.5 5.5 0.00012 31.2 5.4 64 24-88 106-173 (302)
405 PF01070 FMN_dh: FMN-dependent 79.4 4.3 9.3E-05 32.4 4.9 63 45-108 211-277 (356)
406 TIGR00875 fsa_talC_mipB fructo 79.4 14 0.00031 27.4 7.4 81 24-108 121-209 (213)
407 PRK09932 glycerate kinase II; 79.4 32 0.0007 27.9 9.9 66 15-86 277-342 (381)
408 PRK07709 fructose-bisphosphate 79.3 28 0.0006 27.1 10.0 79 10-92 155-237 (285)
409 cd02065 B12-binding_like B12 b 79.2 14 0.00031 23.8 7.0 74 7-90 33-107 (125)
410 TIGR03128 RuMP_HxlA 3-hexulose 79.2 8 0.00017 27.7 5.9 44 45-88 37-83 (206)
411 TIGR03471 HpnJ hopanoid biosyn 79.1 14 0.0003 30.2 7.8 59 24-89 67-128 (472)
412 TIGR02317 prpB methylisocitrat 79.0 22 0.00047 27.7 8.5 45 48-93 186-234 (285)
413 TIGR01496 DHPS dihydropteroate 78.8 14 0.00031 28.0 7.4 74 14-91 27-105 (257)
414 cd04739 DHOD_like Dihydroorota 78.8 26 0.00056 27.4 9.0 87 3-91 102-198 (325)
415 cd04724 Tryptophan_synthase_al 78.7 17 0.00037 27.2 7.7 72 14-88 18-111 (242)
416 PRK09140 2-dehydro-3-deoxy-6-p 78.4 23 0.00051 25.9 8.2 57 24-89 34-91 (206)
417 PF01645 Glu_synthase: Conserv 78.4 13 0.00029 30.0 7.4 61 24-88 171-234 (368)
418 cd08206 RuBisCO_large_I_II_III 78.3 24 0.00052 29.0 8.9 51 61-111 338-391 (414)
419 cd08208 RLP_Photo Ribulose bis 78.2 28 0.00061 28.7 9.3 84 24-111 310-402 (424)
420 TIGR02026 BchE magnesium-proto 78.2 15 0.00033 30.4 7.9 69 13-89 52-123 (497)
421 KOG2550 IMP dehydrogenase/GMP 78.0 2.4 5.3E-05 35.0 3.1 41 51-92 346-387 (503)
422 PRK10558 alpha-dehydro-beta-de 77.8 28 0.00062 26.4 9.4 77 12-90 157-239 (256)
423 COG0159 TrpA Tryptophan syntha 77.7 9.8 0.00021 29.4 6.2 82 9-92 30-133 (265)
424 PLN02535 glycolate oxidase 77.5 6.5 0.00014 31.6 5.4 43 45-88 209-251 (364)
425 PRK10342 glycerate kinase I; P 77.5 37 0.0008 27.6 10.0 66 15-86 277-342 (381)
426 PRK05826 pyruvate kinase; Prov 77.4 29 0.00063 28.9 9.2 96 12-111 227-336 (465)
427 COG1908 FrhD Coenzyme F420-red 77.1 8.4 0.00018 26.6 5.1 50 61-110 33-89 (132)
428 COG0329 DapA Dihydrodipicolina 76.8 33 0.00071 26.6 11.0 83 24-110 37-128 (299)
429 TIGR02660 nifV_homocitr homoci 76.8 20 0.00042 28.5 7.9 81 25-112 36-123 (365)
430 cd00946 FBP_aldolase_IIA Class 76.7 37 0.00081 27.2 9.6 83 10-92 182-279 (345)
431 cd01715 ETF_alpha The electron 76.4 23 0.0005 24.7 7.9 70 41-110 11-81 (168)
432 PRK12330 oxaloacetate decarbox 76.0 5.8 0.00013 33.3 4.9 88 14-105 27-134 (499)
433 PRK12858 tagatose 1,6-diphosph 75.8 9.9 0.00021 30.3 5.9 45 49-94 231-282 (340)
434 TIGR02311 HpaI 2,4-dihydroxyhe 75.6 21 0.00046 26.9 7.5 76 13-90 152-233 (249)
435 cd07382 MPP_DR1281 Deinococcus 75.6 22 0.00049 27.0 7.7 55 47-102 17-79 (255)
436 PF02662 FlpD: Methyl-viologen 75.5 7.5 0.00016 26.3 4.6 50 61-110 32-88 (124)
437 cd00945 Aldolase_Class_I Class 75.5 24 0.00052 24.4 8.0 39 72-110 69-109 (201)
438 TIGR00559 pdxJ pyridoxine 5'-p 75.3 23 0.00049 27.0 7.5 101 2-109 125-236 (237)
439 TIGR00044 pyridoxal phosphate 74.8 11 0.00025 27.8 5.8 71 23-94 153-228 (229)
440 cd01570 NAPRTase_A Nicotinate 74.8 10 0.00022 29.9 5.8 37 59-95 277-315 (327)
441 PRK09549 mtnW 2,3-diketo-5-met 74.7 29 0.00063 28.4 8.5 84 24-111 287-378 (407)
442 PRK04208 rbcL ribulose bisopho 74.6 29 0.00063 29.0 8.5 50 61-110 367-419 (468)
443 cd08213 RuBisCO_large_III Ribu 74.5 29 0.00062 28.5 8.4 51 61-111 336-389 (412)
444 PF01136 Peptidase_U32: Peptid 74.4 29 0.00064 25.2 7.9 42 50-91 26-70 (233)
445 cd00384 ALAD_PBGS Porphobilino 74.3 13 0.00028 29.5 6.1 71 7-88 214-305 (314)
446 PRK11177 phosphoenolpyruvate-p 74.2 15 0.00032 31.3 6.9 86 2-90 425-528 (575)
447 PRK01060 endonuclease IV; Prov 74.2 34 0.00073 25.5 12.3 107 1-109 2-131 (281)
448 cd00954 NAL N-Acetylneuraminic 74.1 37 0.00079 25.9 10.1 81 25-109 35-124 (288)
449 PRK05581 ribulose-phosphate 3- 74.1 22 0.00048 25.5 7.1 86 12-105 18-106 (220)
450 TIGR02708 L_lactate_ox L-lacta 73.7 27 0.00058 28.2 7.9 59 47-106 216-278 (367)
451 PRK09240 thiH thiamine biosynt 73.6 44 0.00096 26.6 9.9 62 24-88 119-180 (371)
452 cd08210 RLP_RrRLP Ribulose bis 73.6 21 0.00046 28.6 7.4 80 24-107 276-363 (364)
453 PF00072 Response_reg: Respons 73.5 19 0.0004 22.2 8.3 58 24-88 42-100 (112)
454 cd08209 RLP_DK-MTP-1-P-enolase 73.5 29 0.00062 28.3 8.1 84 24-111 277-367 (391)
455 COG0320 LipA Lipoate synthase 73.5 14 0.0003 29.1 6.0 58 24-86 112-177 (306)
456 PRK01130 N-acetylmannosamine-6 73.4 28 0.00061 25.3 7.6 37 70-106 77-116 (221)
457 PRK09283 delta-aminolevulinic 73.3 14 0.00031 29.3 6.2 71 7-88 222-313 (323)
458 cd07940 DRE_TIM_IPMS 2-isoprop 73.2 35 0.00077 25.7 8.2 81 25-112 33-124 (268)
459 PRK11750 gltB glutamate syntha 73.1 19 0.0004 34.2 7.7 88 2-90 998-1098(1485)
460 COG0800 Eda 2-keto-3-deoxy-6-p 73.1 7.6 0.00016 29.1 4.4 43 45-87 49-91 (211)
461 PRK02227 hypothetical protein; 72.9 39 0.00086 25.7 10.0 96 5-109 3-106 (238)
462 TIGR01859 fruc_bis_ald_ fructo 72.9 23 0.0005 27.3 7.2 100 6-109 20-122 (282)
463 PF13714 PEP_mutase: Phosphoen 72.8 23 0.0005 26.7 7.1 66 14-93 159-224 (238)
464 PRK11197 lldD L-lactate dehydr 72.7 11 0.00023 30.6 5.5 41 47-88 233-273 (381)
465 COG1832 Predicted CoA-binding 72.7 11 0.00024 26.5 4.9 87 3-93 22-109 (140)
466 PF04481 DUF561: Protein of un 72.7 13 0.00028 28.3 5.5 56 51-108 53-116 (242)
467 KOG1377 Uridine 5'- monophosph 72.5 5.4 0.00012 30.7 3.5 37 77-113 220-257 (261)
468 TIGR02855 spore_yabG sporulati 72.5 28 0.00061 27.2 7.5 84 3-88 132-226 (283)
469 PRK06552 keto-hydroxyglutarate 72.3 10 0.00022 28.1 5.0 43 45-87 49-94 (213)
470 PF05582 Peptidase_U57: YabG p 72.3 22 0.00049 27.8 6.9 84 3-88 133-227 (287)
471 PRK10816 DNA-binding transcrip 72.0 31 0.00066 24.1 9.6 74 24-109 43-117 (223)
472 cd02809 alpha_hydroxyacid_oxid 71.7 43 0.00094 25.7 9.9 41 47-88 160-200 (299)
473 cd08212 RuBisCO_large_I Ribulo 71.6 36 0.00077 28.3 8.4 51 61-111 351-404 (450)
474 TIGR00282 metallophosphoestera 71.6 4.3 9.3E-05 31.2 2.9 56 37-96 11-74 (266)
475 PRK12656 fructose-6-phosphate 71.3 40 0.00087 25.3 8.0 53 58-110 159-215 (222)
476 TIGR01387 cztR_silR_copR heavy 71.3 30 0.00066 23.7 9.6 73 24-108 41-114 (218)
477 TIGR01064 pyruv_kin pyruvate k 71.1 46 0.001 27.6 9.0 93 14-110 227-333 (473)
478 PF01784 NIF3: NIF3 (NGG1p int 70.9 12 0.00025 28.0 5.1 72 9-90 140-221 (241)
479 PLN02540 methylenetetrahydrofo 70.9 34 0.00074 29.3 8.3 94 12-106 71-193 (565)
480 PRK09197 fructose-bisphosphate 70.6 43 0.00094 26.9 8.4 80 10-92 187-283 (350)
481 cd04823 ALAD_PBGS_aspartate_ri 70.5 37 0.0008 27.0 7.9 71 7-88 219-310 (320)
482 PF02595 Gly_kinase: Glycerate 70.4 12 0.00026 30.3 5.3 88 15-108 277-366 (377)
483 PRK14325 (dimethylallyl)adenos 70.2 14 0.0003 30.0 5.7 65 24-89 39-106 (444)
484 PF03841 SelA: L-seryl-tRNA se 70.0 3.4 7.4E-05 33.3 2.1 81 10-95 123-218 (367)
485 PLN02417 dihydrodipicolinate s 69.9 46 0.001 25.3 8.8 82 24-109 34-124 (280)
486 TIGR03332 salvage_mtnW 2,3-dik 69.8 31 0.00066 28.3 7.5 84 24-111 292-383 (407)
487 PRK00507 deoxyribose-phosphate 69.5 35 0.00077 25.4 7.4 81 23-107 88-175 (221)
488 cd00950 DHDPS Dihydrodipicolin 69.5 46 0.001 25.1 8.5 82 24-109 33-123 (284)
489 PRK13753 dihydropteroate synth 69.5 26 0.00057 27.2 6.8 76 11-91 26-106 (279)
490 TIGR02351 thiH thiazole biosyn 69.4 35 0.00076 27.1 7.8 60 25-88 119-179 (366)
491 PRK13384 delta-aminolevulinic 69.4 43 0.00094 26.7 8.0 71 7-88 223-314 (322)
492 PRK05265 pyridoxine 5'-phospha 69.2 31 0.00068 26.3 7.0 102 2-110 128-238 (239)
493 cd00739 DHPS DHPS subgroup of 69.2 31 0.00068 26.2 7.1 72 13-89 27-104 (257)
494 cd07943 DRE_TIM_HOA 4-hydroxy- 69.2 15 0.00033 27.6 5.4 43 46-88 60-105 (263)
495 TIGR00460 fmt methionyl-tRNA f 69.1 40 0.00088 26.2 7.9 84 1-90 1-87 (313)
496 PRK13957 indole-3-glycerol-pho 69.0 49 0.0011 25.2 8.6 76 11-95 62-138 (247)
497 PF00809 Pterin_bind: Pterin b 68.9 42 0.00092 24.5 7.8 67 24-91 31-102 (210)
498 PRK04311 selenocysteine syntha 68.7 41 0.00089 27.8 8.2 73 10-88 203-290 (464)
499 cd02808 GltS_FMN Glutamate syn 68.3 21 0.00046 28.8 6.3 45 46-90 200-247 (392)
500 PRK12484 nicotinate phosphorib 68.2 19 0.00042 29.7 6.2 35 59-93 278-314 (443)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-35 Score=216.66 Aligned_cols=107 Identities=43% Similarity=0.782 Sum_probs=101.6
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEEEcCCChhhHHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLGPSTIAEA 77 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~i~~dGGI~~~ni~~l 77 (115)
+|+|++|||+||++.+++++ +.+|+|++|+|+|||+||+|++++++||+++|++.. ++.|+||||||.+|++++
T Consensus 110 ~kaGv~lnP~Tp~~~i~~~l---~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~ 186 (220)
T COG0036 110 VKAGLVLNPATPLEALEPVL---DDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQL 186 (220)
T ss_pred CeEEEEECCCCCHHHHHHHH---hhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHH
Confidence 68999999999999999999 999999999999999999999999999999999876 678999999999999999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
.++|||++|+||++|+++|+++.+++++..+..
T Consensus 187 ~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~~ 219 (220)
T COG0036 187 AAAGADVFVAGSALFGADDYKATIRELRGELLK 219 (220)
T ss_pred HHcCCCEEEEEEEEeCCccHHHHHHHHHHHhhc
Confidence 999999999999999999999999999987653
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.8e-34 Score=215.03 Aligned_cols=108 Identities=41% Similarity=0.752 Sum_probs=102.0
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAE 76 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~ 76 (115)
+|+||||||+||++.+++|+ +.+|+|++|+|+|||+||+|.+.+++|+++++++ ..++.|+||||||.+|+++
T Consensus 111 ~k~GlalnP~T~~~~i~~~l---~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~ 187 (223)
T PRK08745 111 CQAGLVLNPATPVDILDWVL---PELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGA 187 (223)
T ss_pred CceeEEeCCCCCHHHHHHHH---hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence 58999999999999999999 9999999999999999999999999999999887 3457899999999999999
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
+.++|||++|+||+||+++|++++++++++.+.++
T Consensus 188 l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~~~ 222 (223)
T PRK08745 188 IAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAV 222 (223)
T ss_pred HHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999887654
No 3
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=1.4e-33 Score=210.76 Aligned_cols=104 Identities=20% Similarity=0.359 Sum_probs=98.8
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEA 77 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~l 77 (115)
|+||||||+||++.+++|+ +.+|+|++|+|+|||+||+|.+.+++||+++|++. .++.|+||||||.+|++++
T Consensus 120 kaGlalnP~Tp~~~i~~~l---~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l 196 (228)
T PRK08091 120 LIGLCLCPETPISLLEPYL---DQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYL 196 (228)
T ss_pred eEEEEECCCCCHHHHHHHH---hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHH
Confidence 8999999999999999999 99999999999999999999999999999998763 3577999999999999999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~ 108 (115)
.++|||++|+||+||+++|+++.+++|++.+
T Consensus 197 ~~aGaD~~V~GSalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 197 KQHQIDWVVSGSALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred HHCCCCEEEEChhhhCCCCHHHHHHHHHHhh
Confidence 9999999999999999889999999999865
No 4
>PRK08005 epimerase; Validated
Probab=100.00 E-value=2.1e-33 Score=207.66 Aligned_cols=102 Identities=28% Similarity=0.460 Sum_probs=97.6
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
+|+||||||+||++.+++++ +.+|+|++|+|+|||+||+|.+.+++||+++|+++++..|+||||||.+|++++.++
T Consensus 107 ~k~GlAlnP~Tp~~~i~~~l---~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~a 183 (210)
T PRK08005 107 AKAGLALNPATPLLPYRYLA---LQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAA 183 (210)
T ss_pred CcEEEEECCCCCHHHHHHHH---HhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHC
Confidence 58999999999999999999 999999999999999999999999999999999887778999999999999999999
Q ss_pred CCCEEEEcccccCCCCHHHHHHHHH
Q 033625 81 GANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 81 Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
|||++|+||+||+++|+++.++.|.
T Consensus 184 Gad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 184 GAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred CCCEEEEChHhhCCCCHHHHHHHHh
Confidence 9999999999999889988888775
No 5
>PRK14057 epimerase; Provisional
Probab=100.00 E-value=2.8e-33 Score=211.66 Aligned_cols=108 Identities=22% Similarity=0.405 Sum_probs=101.5
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEA 77 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~l 77 (115)
++||||||+||++.+++++ +.+|+|++|+|+|||+||+|++.+++||+++|++. .++.|+||||||.+|++++
T Consensus 134 kaGlAlnP~Tp~e~i~~~l---~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l 210 (254)
T PRK14057 134 IRGISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSL 210 (254)
T ss_pred eeEEEECCCCCHHHHHHHH---HhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHH
Confidence 6999999999999999999 99999999999999999999999999999998763 3588999999999999999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~ 112 (115)
.++|||++|+||++|+++|+++.+++|++.+..++
T Consensus 211 ~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~~~~ 245 (254)
T PRK14057 211 IAQGIDRVVSGSALFRDDRLVENTRSWRAMFKVAG 245 (254)
T ss_pred HHCCCCEEEEChHhhCCCCHHHHHHHHHHHHhhcC
Confidence 99999999999999998899999999998877654
No 6
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.3e-32 Score=205.65 Aligned_cols=108 Identities=34% Similarity=0.598 Sum_probs=100.1
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE 76 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~ 76 (115)
+|+||||||+||++.+++++ +.+|+|++|+|+|||+||+|++.+++||+++|++. .++.|+||||||.+|+++
T Consensus 109 ~kaGlalnP~T~~~~l~~~l---~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~ 185 (229)
T PRK09722 109 MKVGLVLNPETPVESIKYYI---HLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEK 185 (229)
T ss_pred CCEEEEeCCCCCHHHHHHHH---HhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 68999999999999999999 99999999999999999999999999999999763 357799999999999999
Q ss_pred HHHcCCCEEEEcc-cccC-CCCHHHHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGS-SVFG-APEPAHVISLMRKSVEDA 111 (115)
Q Consensus 77 l~~~Gad~iv~Gs-aif~-~~d~~~~~~~l~~~~~~~ 111 (115)
+.++|||++|+|| +||+ .+|+++.++.+++.++++
T Consensus 186 ~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 186 LMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred HHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999995 5998 578999999999887754
No 7
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=199.86 Aligned_cols=110 Identities=69% Similarity=1.073 Sum_probs=106.3
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
||+|+||+|+||++.+++++ +.+|++|||+|+|||+||+|.++.+.|++.+|+.+|++.|++|||++++|+..+.++
T Consensus 113 mk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~A 189 (224)
T KOG3111|consen 113 MKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEA 189 (224)
T ss_pred CeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHc
Confidence 68999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625 81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113 (115)
Q Consensus 81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~ 113 (115)
|||.+|+||++|++.|+.+.++.||+....+++
T Consensus 190 GAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~~ 222 (224)
T KOG3111|consen 190 GANMIVAGSAVFGAADPSDVISLLRNSVEKAAC 222 (224)
T ss_pred CCCEEEecceeecCCCHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999998877553
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=9.7e-33 Score=205.33 Aligned_cols=107 Identities=39% Similarity=0.757 Sum_probs=101.7
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE 76 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~ 76 (115)
+|+|+||||+||++.+++++ +.+|+|++|+|+|||+||+|.+.++++++++++... +++|+||||||++|+++
T Consensus 107 ~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~ 183 (220)
T PRK08883 107 CQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIRE 183 (220)
T ss_pred CcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence 58999999999999999999 999999999999999999999999999999988743 58999999999999999
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
+.++|||++|+||+||+++|++++++++++.+++
T Consensus 184 l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 184 IAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred HHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988765
No 9
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=99.97 E-value=5.1e-31 Score=193.85 Aligned_cols=92 Identities=51% Similarity=0.915 Sum_probs=80.1
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE 76 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~ 76 (115)
+|+||||||.||++.+++|+ +.+|+|++|+|+|||+||+|.+.+++||++++++. .++.|+||||||.+|+++
T Consensus 106 ~k~GialnP~T~~~~~~~~l---~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~ 182 (201)
T PF00834_consen 106 IKAGIALNPETPVEELEPYL---DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQ 182 (201)
T ss_dssp SEEEEEE-TTS-GGGGTTTG---CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHH
T ss_pred CCEEEEEECCCCchHHHHHh---hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHH
Confidence 58999999999999999999 99999999999999999999999999999998764 469999999999999999
Q ss_pred HHHcCCCEEEEcccccCCC
Q 033625 77 AASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~ 95 (115)
+.++|||++|+||+||+++
T Consensus 183 ~~~aGad~~V~Gs~iF~~~ 201 (201)
T PF00834_consen 183 LVEAGADIFVAGSAIFKAD 201 (201)
T ss_dssp HHHHT--EEEESHHHHTS-
T ss_pred HHHcCCCEEEECHHHhCCC
Confidence 9999999999999999864
No 10
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.95 E-value=6.6e-28 Score=179.97 Aligned_cols=110 Identities=59% Similarity=0.944 Sum_probs=103.4
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
+++||++||.|+++.++++++. +.+|+|++|+++||++||.|.+..+++++++++..++..|+||||||++|++.+.++
T Consensus 115 ~~~gval~p~t~~e~l~~~l~~-~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~a 193 (228)
T PTZ00170 115 MKVGVAIKPKTPVEVLFPLIDT-DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADA 193 (228)
T ss_pred CeEEEEECCCCCHHHHHHHHcc-chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHc
Confidence 5799999999999999999843 679999999999999999999999999999999887889999999999999999999
Q ss_pred CCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
|||++|+||+||+++||+++++++++.+++.
T Consensus 194 Gad~iVvGsaI~~a~d~~~~~~~i~~~~~~~ 224 (228)
T PTZ00170 194 GANVIVAGSSIFKAKDRKQAIELLRESVQKH 224 (228)
T ss_pred CCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998763
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.94 E-value=1.9e-26 Score=171.56 Aligned_cols=108 Identities=70% Similarity=1.107 Sum_probs=102.4
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCC--CCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANP--VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 78 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~--vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~ 78 (115)
+++|++++|+|+++.+++++ +. +|||++|+++||+++|+|.+..+++++++++..+++||+||||||++|++++.
T Consensus 116 ~~iGls~~~~t~~~~~~~~~---~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~ 192 (229)
T PLN02334 116 MKAGVVLNPGTPVEAVEPVV---EKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAA 192 (229)
T ss_pred CeEEEEECCCCCHHHHHHHH---hccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHH
Confidence 46899999999999999999 87 99999999999999999999999999999998778899999999999999999
Q ss_pred HcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 79 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
++|||++|+||+||+++||++++++|++.++++
T Consensus 193 ~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 193 EAGANVIVAGSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred HcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887764
No 12
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.87 E-value=2.2e-21 Score=142.25 Aligned_cols=105 Identities=44% Similarity=0.825 Sum_probs=95.2
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE 76 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~ 76 (115)
+++|+.++|+|+.+.++++. ..+||+++|+++||.+||.+.+..+++++++++..+ ++++.++||||++|+++
T Consensus 110 ~~~g~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~ 186 (220)
T PRK05581 110 IKAGLVLNPATPLEPLEDVL---DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKE 186 (220)
T ss_pred CEEEEEECCCCCHHHHHHHH---hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence 36899999999999999988 789999999999999999999999999999887643 25688999999999999
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~ 108 (115)
+.++|+|++|+||+||+++||.+++++|++.+
T Consensus 187 l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 187 CAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred HHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999998765
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.84 E-value=1.7e-20 Score=136.38 Aligned_cols=101 Identities=44% Similarity=0.768 Sum_probs=92.2
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEA 77 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~l 77 (115)
+.|+.++++|+.+.++++. ..+|++++|+++||++|+.|.+..+++++++++.. +++|+.++||||++|++++
T Consensus 106 ~~~~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l 182 (210)
T TIGR01163 106 KAGIVLNPATPLEFLEYVL---PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNAREL 182 (210)
T ss_pred cEEEEECCCCCHHHHHHHH---hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHH
Confidence 5789999999999999998 78999999999999999999999999998887653 3478999999999999999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
.+.|+|++++||+||+++||++++++++
T Consensus 183 ~~~gad~iivgsai~~~~d~~~~~~~~~ 210 (210)
T TIGR01163 183 AEAGADILVAGSAIFGADDYKEVIRSLR 210 (210)
T ss_pred HHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence 9999999999999999999999988763
No 14
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.83 E-value=5.1e-20 Score=133.57 Aligned_cols=101 Identities=52% Similarity=0.895 Sum_probs=92.1
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEA 77 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~l 77 (115)
++|+.++++|+.+.++.+. ..+||+++|+++||.+|+.+....+++++++++..+ ++|+.++|||+++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~---~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~ 183 (211)
T cd00429 107 KAGVALNPGTPVEVLEPYL---DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLL 183 (211)
T ss_pred eEEEEecCCCCHHHHHHHH---hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 5799999999999899888 779999999999999999998888899998887643 589999999999999999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
.+.|+|++++||+||+.+||.+++++++
T Consensus 184 ~~~gad~iivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 184 AEAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred HHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence 9999999999999999999999988764
No 15
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.82 E-value=1.4e-19 Score=136.10 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=88.7
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS 79 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~ 79 (115)
+++|++++|+||.+.+++++ ...|.+++|+++||++ ++|.+...++++++|+..++.+++++||| |+++++.+.+
T Consensus 130 l~~~~~v~p~T~~e~l~~~~---~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~ 205 (244)
T PRK13125 130 LKPVFFTSPKFPDLLIHRLS---KLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS 205 (244)
T ss_pred CCEEEEECCCCCHHHHHHHH---HhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH
Confidence 57999999999999999999 8899999999999995 58999999999999998767899999999 9999999999
Q ss_pred cCCCEEEEcccccC---CCCHHHHHHHHH
Q 033625 80 AGANCIVAGSSVFG---APEPAHVISLMR 105 (115)
Q Consensus 80 ~Gad~iv~Gsaif~---~~d~~~~~~~l~ 105 (115)
+|||++|+||++|+ ..+..+..+.++
T Consensus 206 ~gaD~vvvGSai~~~~~~~~~~~~~~~~~ 234 (244)
T PRK13125 206 AGADGVVVGTAFIEELEKNGVESALNLLK 234 (244)
T ss_pred cCCCEEEECHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999996 344444444443
No 16
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.81 E-value=2.1e-19 Score=143.31 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=91.8
Q ss_pred CceEE-EecCCCCHHhHHHhHhCCCCCCEEEEEe-eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625 1 MRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMT-VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 78 (115)
Q Consensus 1 ~k~Gl-al~p~t~~~~~~~~~~~~~~vD~vlvm~-v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~ 78 (115)
+++|+ ++||+||++.++++. ..+|+|++|+ ++|+ +| ...+++++++++...+++|++||||+.+|++++.
T Consensus 277 ikvgVD~lnp~tp~e~i~~l~---~~vD~Vllht~vdp~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~ 348 (391)
T PRK13307 277 IYSILDMLNVEDPVKLLESLK---VKPDVVELHRGIDEE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEAL 348 (391)
T ss_pred CEEEEEEcCCCCHHHHHHHhh---CCCCEEEEccccCCC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHH
Confidence 47899 999999999999998 8999999997 8898 33 3466789999887778999999999999999999
Q ss_pred HcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625 79 SAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
++|||++|+||+||+++||.++++++++.++
T Consensus 349 ~aGADivVVGsaIf~a~Dp~~aak~l~~~i~ 379 (391)
T PRK13307 349 KAGADILVVGRAITKSKDVRRAAEDFLNKLK 379 (391)
T ss_pred HcCCCEEEEeHHHhCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999999999998875
No 17
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.81 E-value=3.3e-19 Score=129.92 Aligned_cols=101 Identities=19% Similarity=0.311 Sum_probs=91.7
Q ss_pred CceEEEe-cCCCCHHhHHHhHhCCC-CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625 1 MRPGVAL-KPGTSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 78 (115)
Q Consensus 1 ~k~Glal-~p~t~~~~~~~~~~~~~-~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~ 78 (115)
+++++++ +|.|+++.++.+. . ++||| +++|||++|.+.+..+++++++++..+.+++.++|||+.+|++++.
T Consensus 103 ~~~~~~~~~~~t~~~~~~~~~---~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~ 176 (206)
T TIGR03128 103 KEVQVDLINVKDKVKRAKELK---ELGADYI---GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVI 176 (206)
T ss_pred CEEEEEecCCCChHHHHHHHH---HcCCCEE---EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHH
Confidence 4688885 9999999888887 5 89988 4689999999998889999999988778889999999999999999
Q ss_pred HcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625 79 SAGANCIVAGSSVFGAPEPAHVISLMRKS 107 (115)
Q Consensus 79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~ 107 (115)
++|+|++++||+||+++|+++.++++++.
T Consensus 177 ~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 177 KLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999875
No 18
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.79 E-value=5e-19 Score=131.34 Aligned_cols=106 Identities=15% Similarity=0.264 Sum_probs=96.5
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
++|++++|.|+.+.++..++. +..|+++.|+++|+++||.|.+..+++++++++. ++.+.|+|||++++++.+.+.|
T Consensus 108 ~~~V~llts~~~~~l~~~~~~-~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~--~~~i~V~gGI~~~~~~~~~~~~ 184 (216)
T PRK13306 108 EIQIELYGNWTWEQAQQWRDA-GISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM--GFKVSVTGGLVVEDLKLFKGIP 184 (216)
T ss_pred EEEEEECCCCCHHHHHHHHcC-ChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC--CCeEEEcCCCCHhhHHHHhcCC
Confidence 689999999999999876621 3789999999999999999999999999999763 5679999999999999999999
Q ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 82 ANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 82 ad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
||++|+||+||+++||.++++++++.+++
T Consensus 185 ad~~VvGr~I~~a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 185 VKTFIAGRAIRGAADPAAAARAFKDEIAK 213 (216)
T ss_pred CCEEEECCcccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998864
No 19
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.78 E-value=5.3e-20 Score=135.31 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=91.7
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCChhh--HHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPST--IAEA 77 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI~~~n--i~~l 77 (115)
+++|++++|.+ .+.++.+. +.+|.++.|+++||++||.|.+..+++++++++..+. +.+ +||||+.++ ++.+
T Consensus 107 ~~~~v~~~~~~-~~~~~~~~---~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~ 181 (215)
T PRK13813 107 GKVFVVVEMSH-PGALEFIQ---PHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADA 181 (215)
T ss_pred CeEEEEEeCCC-CCCCCCHH---HHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHH
Confidence 47899999986 55566666 6679999999999999999998889999999887643 556 999999985 9999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
.++|||++|+||+||+++||.+.++.+++.+++
T Consensus 182 ~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 182 IKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred HHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988764
No 20
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.74 E-value=2.6e-17 Score=119.71 Aligned_cols=106 Identities=21% Similarity=0.256 Sum_probs=90.5
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~-~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
++|++. +|+.+..+.+. .++|||.++++.|+.+++...+ ..+++++++++..+++|+.++||||.+|++.+.++
T Consensus 106 ~~g~~~--~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~ 180 (212)
T PRK00043 106 IIGLST--HTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEA 180 (212)
T ss_pred EEEEeC--CCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHc
Confidence 356654 47778777777 8999999999999987766543 34888999988776699999999999999999999
Q ss_pred CCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625 81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112 (115)
Q Consensus 81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~ 112 (115)
|+|++++||+||+++||.+.++++++.+++++
T Consensus 181 Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~~~ 212 (212)
T PRK00043 181 GADGVAVVSAITGAEDPEAAARALLAAFRAAR 212 (212)
T ss_pred CCCEEEEeHHhhcCCCHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999998877653
No 21
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.73 E-value=4.5e-17 Score=117.99 Aligned_cols=96 Identities=22% Similarity=0.328 Sum_probs=80.4
Q ss_pred CceEEE-ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625 1 MRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 78 (115)
Q Consensus 1 ~k~Gla-l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~ 78 (115)
+++|++ ++|.|+.+..+.+. ..+|++++ +|++.++.+ .+...++++++++. +++|+.++||||++|++++.
T Consensus 104 ~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~ 176 (202)
T cd04726 104 KEVQVDLIGVEDPEKRAKLLK---LGVDIVIL---HRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFK 176 (202)
T ss_pred CeEEEEEeCCCCHHHHHHHHH---CCCCEEEE---cCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHH
Confidence 467886 99999999988444 58999886 566655555 46677888888876 57999999999999999999
Q ss_pred HcCCCEEEEcccccCCCCHHHHHHH
Q 033625 79 SAGANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 79 ~~Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
++|||++++||+||+++||++.+++
T Consensus 177 ~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 177 KAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred hcCCCEEEEeehhcCCCCHHHHHhc
Confidence 9999999999999999999888764
No 22
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.69 E-value=4.1e-16 Score=118.38 Aligned_cols=104 Identities=18% Similarity=0.380 Sum_probs=88.6
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE 76 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~ 76 (115)
++++++++|+|+.+.++++. ...| +|.+|++. |++||. |.+...++++++|+.. +.|+.++|||+ +++++.
T Consensus 141 l~~i~lv~P~T~~eri~~i~---~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~ 215 (256)
T TIGR00262 141 VKPIFLVAPNADDERLKQIA---EKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQ 215 (256)
T ss_pred CcEEEEECCCCCHHHHHHHH---HhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH
Confidence 35789999999999999999 7777 99999997 999986 8889999999999874 67999999997 999999
Q ss_pred HHHcCCCEEEEcccccC-----CCCHHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGSSVFG-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~-----~~d~~~~~~~l~~~~~ 109 (115)
+.+.|||++|+||++|+ +.++.+..+.+++.++
T Consensus 216 ~~~~GADgvVvGSaiv~~~~~~~~~~~~~~~~i~~~~~ 253 (256)
T TIGR00262 216 AIDAGADGVIVGSAIVKIIEENLNTPEKMLQALEEFVQ 253 (256)
T ss_pred HHHcCCCEEEECHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 99999999999999996 1255555566665544
No 23
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.69 E-value=3.6e-16 Score=117.59 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=81.6
Q ss_pred CceEEEecCCCCHHhHHHhHhCCC-CCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA 77 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~-~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l 77 (115)
++++++++|.|+.+.+++++ . ..|+|.+|++.|++++|. |.+...++++++|+. .++||.++|||+ .++++.+
T Consensus 130 ~~~i~~i~P~T~~~~i~~i~---~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~ 205 (242)
T cd04724 130 LDLIFLVAPTTPDERIKKIA---ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEV 205 (242)
T ss_pred CcEEEEeCCCCCHHHHHHHH---hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHH
Confidence 46899999999999999999 6 799999999999999998 788889999999987 589999999999 6699999
Q ss_pred HHcCCCEEEEcccccC
Q 033625 78 ASAGANCIVAGSSVFG 93 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~ 93 (115)
.++ ||++|+||++|+
T Consensus 206 ~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 206 AKY-ADGVIVGSALVK 220 (242)
T ss_pred Hcc-CCEEEECHHHHH
Confidence 999 999999999986
No 24
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.68 E-value=3.7e-16 Score=111.34 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=82.8
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
++|+++ +|+.+..+... .++|||.++++.|+.+++.+ .+..+++++++++. .++|+.++|||+.+|+.++.++
T Consensus 97 ~~g~~~--~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~ 170 (196)
T cd00564 97 IIGVST--HSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAA 170 (196)
T ss_pred EEEeeC--CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHc
Confidence 355554 46555444444 58999999999999998887 77888999998876 5799999999999999999999
Q ss_pred CCCEEEEcccccCCCCHHHHHHHHH
Q 033625 81 GANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 81 Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
|+|++++||++|+++|+.+++++++
T Consensus 171 Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 171 GADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred CCCEEEEehHhhcCCCHHHHHHHHh
Confidence 9999999999999999999988875
No 25
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.62 E-value=5.2e-15 Score=109.71 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=86.4
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
++.+ .++..+...+ .++|||.+.++.|.-+...-.+..++.++++++.. ++|+.++||||++|++++.++|||+++
T Consensus 109 ~S~h-~~eea~~A~~--~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~-~iP~vAIGGi~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 109 LSTH-DLEEALEAEE--LGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV-NIPVVAIGGINLENVPEVLEAGADGVA 184 (211)
T ss_pred eecC-CHHHHHHHHh--cCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHhCCCeEE
Confidence 3444 4444444331 45999999999999888777888999999998875 499999999999999999999999999
Q ss_pred EcccccCCCCHHHHHHHHHHHHHHHh
Q 033625 87 AGSSVFGAPEPAHVISLMRKSVEDAQ 112 (115)
Q Consensus 87 ~Gsaif~~~d~~~~~~~l~~~~~~~~ 112 (115)
+.|+||.++|++.+++++++.++...
T Consensus 185 vvsai~~a~d~~~a~~~~~~~~~~~~ 210 (211)
T COG0352 185 VVSAITSAADPAAAAKALRNALEDEK 210 (211)
T ss_pred ehhHhhcCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987653
No 26
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.59 E-value=1.5e-14 Score=116.32 Aligned_cols=103 Identities=21% Similarity=0.361 Sum_probs=88.4
Q ss_pred ceEE-EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Gl-al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
++++ +++|.|+++.+..+.+ .++|||. +.|||++|.+.+..++.++++++.. ++|+.++|||+.+|+.++.++
T Consensus 109 ~~~~g~~s~~t~~e~~~~a~~--~GaD~I~---~~pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l~a 182 (430)
T PRK07028 109 RLMADLINVPDPVKRAVELEE--LGVDYIN---VHVGIDQQMLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAVAA 182 (430)
T ss_pred EEEEEecCCCCHHHHHHHHHh--cCCCEEE---EEeccchhhcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHHHc
Confidence 3455 4788898888777761 3799994 5799999888777888899988764 599999999999999999999
Q ss_pred CCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 81 GANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
|||++++||+||+++||.+.++.+++.+++
T Consensus 183 GAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 183 GADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred CCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999988764
No 27
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.53 E-value=1.5e-13 Score=104.90 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=84.4
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA 77 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l 77 (115)
.+...++|+|+.+.++.+. ...+ ||.+|+ .+|++|+. +.+...+.++++|+. .+.|+++++||+ +++++.+
T Consensus 146 ~~I~lv~PtT~~eri~~i~---~~a~gFIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~ 220 (263)
T CHL00200 146 ELILLIAPTSSKSRIQKIA---RAAPGCIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQI 220 (263)
T ss_pred CEEEEECCCCCHHHHHHHH---HhCCCcEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHH
Confidence 5678899999999999999 7777 999998 89999984 445556667777774 489999999999 9999999
Q ss_pred HHcCCCEEEEcccc---cCCCCHHHHHHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSV---FGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 78 ~~~Gad~iv~Gsai---f~~~d~~~~~~~l~~~~~~ 110 (115)
.+.|||++|+||++ |.+.+.++..+++++.+++
T Consensus 221 ~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~~~~~ 256 (263)
T CHL00200 221 KGWNINGIVIGSACVQILLGSSPEKGLDQLSEFCKV 256 (263)
T ss_pred HhcCCCEEEECHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 99999999999998 6544555555556655544
No 28
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.51 E-value=1.7e-13 Score=110.48 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=87.8
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhC--------CCCcEEEEcCCChhhHH
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRY--------PSLDIEVDGGLGPSTIA 75 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~--------~~~~i~~dGGI~~~ni~ 75 (115)
|-++.++..|..+..- .++|||.+.++.|..+.+ ...+..+++++++++.. .++|+.++|||+.+|++
T Consensus 303 IGvStHs~eEl~~A~~---~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~ 379 (437)
T PRK12290 303 LGLSTHGYYELLRIVQ---IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAE 379 (437)
T ss_pred EEEecCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHH
Confidence 3455666666666555 689999999999998876 45677888888777654 27999999999999999
Q ss_pred HHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 76 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 76 ~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
++.++||+.+++.|+|++++||.+++++|++++...
T Consensus 380 ~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~ 415 (437)
T PRK12290 380 QVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAEN 415 (437)
T ss_pred HHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988753
No 29
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.46 E-value=9.3e-13 Score=97.48 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=81.1
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
|.++.++..+..+..- .++||+.+.++.|.-+... -.+..++.++++.+...++|+.+.|||+.+|+.++.++|++
T Consensus 105 iG~S~H~~~e~~~A~~---~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~ 181 (211)
T PRK03512 105 LGVSTHDDMEIDVALA---ARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVG 181 (211)
T ss_pred EEEeCCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCC
Confidence 3445566655444433 5899999999998866653 23346666777765544799999999999999999999999
Q ss_pred EEEEcccccCCCCHHHHHHHHHHHHH
Q 033625 84 CIVAGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 84 ~iv~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
++++.|+||+++||.++++++++.+.
T Consensus 182 GiAvisai~~~~d~~~~~~~l~~~~~ 207 (211)
T PRK03512 182 SIAVVSAITQAADWRAATAQLLELAE 207 (211)
T ss_pred EEEEhhHhhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998765
No 30
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.45 E-value=1.1e-12 Score=97.81 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs 89 (115)
.+..+...+.. ..++|||.+.++.+. +.....+..++.++++++.. ++|+.+.||||.+|++++.++||+++++.|
T Consensus 118 ~~s~~~a~~A~--~~gaDYv~~Gpv~t~-tK~~~~p~gl~~l~~~~~~~-~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 118 LRDRHGAMEIG--ELRPDYLFFGKLGAD-NKPEAHPRNLSLAEWWAEMI-EIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred CCCHHHHHHhh--hcCCCEEEECCCCCC-CCCCCCCCChHHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 34455443332 168999999999753 33334556777888877764 799999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 033625 90 SVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 90 aif~~~d~~~~~~~l~~~~~~ 110 (115)
+||+++||.+++++|++.++.
T Consensus 194 ai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 194 AVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred HhhCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 31
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.44 E-value=1.2e-12 Score=103.31 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=84.4
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
|..+.+++.+..+..- .++|||.+.++.|.-+.....+..++.++++++.. ++|+.+.|||+++|+.++.++|+++
T Consensus 243 IG~S~Hs~~e~~~A~~---~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 243 IGRSTTNPEEMAKAIA---EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQAGAKR 318 (347)
T ss_pred EEEecCCHHHHHHHHH---cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCcE
Confidence 4455566656555555 68999999999987665444466778888887764 6999999999999999999999999
Q ss_pred EEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 85 IVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 85 iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
++++|+||+++||.++++++.+.+.+
T Consensus 319 VAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 319 VAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999988765
No 32
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.43 E-value=1.9e-12 Score=94.48 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
.++||+++..+.|..+.+...+..++.++++++.. ++|+.+.|||+++|+.++.++|+|++++||+||+++||.+++++
T Consensus 114 ~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~ 192 (201)
T PRK07695 114 NGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKR 192 (201)
T ss_pred cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHH
Confidence 58999988777776555444444567777777654 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 033625 104 MRKSVEDA 111 (115)
Q Consensus 104 l~~~~~~~ 111 (115)
+++.++.|
T Consensus 193 ~~~~~~~~ 200 (201)
T PRK07695 193 YAESIKKW 200 (201)
T ss_pred HHHHHhhc
Confidence 99988765
No 33
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.38 E-value=4.2e-12 Score=91.70 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=72.5
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
..+.+|..+..+..- .++||+.+.++.|.-+.... .+..++.++++++..+++|+.+.||||++|++++.++|+|+
T Consensus 100 g~s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 100 GVSTHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADG 176 (196)
T ss_pred EEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCE
Confidence 344555555444333 58999999888775332221 22356777777766567999999999999999999999999
Q ss_pred EEEcccccCCCCHHHHHHHH
Q 033625 85 IVAGSSVFGAPEPAHVISLM 104 (115)
Q Consensus 85 iv~Gsaif~~~d~~~~~~~l 104 (115)
+++||+||+++||.+.+++|
T Consensus 177 va~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 177 VAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred EEEhHHhhCCCCHHHHHHhC
Confidence 99999999999999887753
No 34
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.35 E-value=1.3e-11 Score=101.08 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=87.6
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC--
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN-- 83 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad-- 83 (115)
.++.+|..+..+..- .++|||.+.++.|..+.....+..++.++++.+.. ++|+.+.|||+.+|++++.++|++
T Consensus 394 G~S~h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~-~~Pv~aiGGI~~~~~~~~~~~G~~~~ 469 (502)
T PLN02898 394 GVSCKTPEQAEQAWK---DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS-KLPVVAIGGISASNAASVMESGAPNL 469 (502)
T ss_pred EEeCCCHHHHHHHhh---cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC-CCCEEEECCCCHHHHHHHHHcCCCcC
Confidence 344567766555555 79999999999997665444455677888887653 799999999999999999999999
Q ss_pred -EEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 033625 84 -CIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115 (115)
Q Consensus 84 -~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~~ 115 (115)
+++++|+||+++||.+.++++++.+.+..|.|
T Consensus 470 ~gvav~~~i~~~~d~~~~~~~~~~~~~~~~~~~ 502 (502)
T PLN02898 470 KGVAVVSALFDQEDVLKATRKLHAILTEALSES 502 (502)
T ss_pred ceEEEEeHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999988766654
No 35
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.29 E-value=3.3e-11 Score=89.02 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=73.5
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
.....|+-|..+.+- .++|||.+ +|. ..+ ..+.++++++..+ ++|+.+.||||.+|++++.++|+|.
T Consensus 108 ~~G~~t~~E~~~A~~---~Gad~vk~---Fpa---~~~---G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~ 175 (206)
T PRK09140 108 MPGVATPTEAFAALR---AGAQALKL---FPA---SQL---GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAG 175 (206)
T ss_pred EcccCCHHHHHHHHH---cCCCEEEE---CCC---CCC---CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeE
Confidence 445778877777766 78999985 452 222 3566777777775 6999999999999999999999999
Q ss_pred EEEcccccCC----CCHHHHHHHHHHHHH
Q 033625 85 IVAGSSVFGA----PEPAHVISLMRKSVE 109 (115)
Q Consensus 85 iv~Gsaif~~----~d~~~~~~~l~~~~~ 109 (115)
++++|+||++ +++++.++++++.++
T Consensus 176 vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 176 FGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred EEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 9999999986 678888888877665
No 36
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.28 E-value=3.8e-11 Score=89.08 Aligned_cols=97 Identities=21% Similarity=0.378 Sum_probs=77.3
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc----cchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK----FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA 82 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~----~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga 82 (115)
+|..||.+..+.+-+ -++||+. +|-|.+-|. +..+.+++++++... .+++.|.|||++++++.+...|+
T Consensus 114 ~~~~~~~~~~~~l~~--~gvd~~~---~H~g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAVaGGI~~~~i~~~~~~~~ 186 (217)
T COG0269 114 IGVWDPEQRAKWLKE--LGVDQVI---LHRGRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAVAGGITPEDIPLFKGIGA 186 (217)
T ss_pred ecCCCHHHHHHHHHH--hCCCEEE---EEecccHhhcCCCccHHHHHHHHHhhcc--CceEEEecCCCHHHHHHHhcCCC
Confidence 456677776666541 4799997 788887664 333445555555443 48999999999999999999999
Q ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 83 NCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 83 d~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
++||+|++|.++.||.++++.+++.++.
T Consensus 187 ~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 187 DIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred CEEEECchhcCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999998854
No 37
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.21 E-value=1.1e-10 Score=99.79 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCC--CCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 25 PVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~--~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
++||+.+.++.|.-+...-. +-.++.++++++... ++|+.+.|||+.+|++++.++|++++++.|+||+++||.+++
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~ 207 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAA 207 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHH
Confidence 48999999999986664433 346778888877764 499999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 033625 102 SLMRKSVEDA 111 (115)
Q Consensus 102 ~~l~~~~~~~ 111 (115)
+++++.++..
T Consensus 208 ~~l~~~~~~~ 217 (755)
T PRK09517 208 RELRTAFQPT 217 (755)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 38
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.14 E-value=2e-10 Score=87.90 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=62.3
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
..+.+.++|+.|..+.+. .++|||+++++.| +.+.+ ++.+++. +++|++++||||++|+.++.++|
T Consensus 182 ~~I~vev~t~eea~~A~~---~gaD~I~ld~~~~---------e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~G 248 (269)
T cd01568 182 KKIEVEVETLEEAEEALE---AGADIIMLDNMSP---------EELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETG 248 (269)
T ss_pred CeEEEecCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcC
Confidence 357888999988888887 8899999977666 33333 2233333 57999999999999999999999
Q ss_pred CCEEEEcccccCC
Q 033625 82 ANCIVAGSSVFGA 94 (115)
Q Consensus 82 ad~iv~Gsaif~~ 94 (115)
+|++++|+..++.
T Consensus 249 ad~Isvgal~~s~ 261 (269)
T cd01568 249 VDVISTGALTHSA 261 (269)
T ss_pred CCEEEEcHHHcCC
Confidence 9999997666654
No 39
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.12 E-value=8.6e-10 Score=84.72 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=76.2
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc------------------------c---c---chhHHHHHHHHHhhC
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ------------------------K---F---MPEMMDKVRSLRNRY 58 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq------------------------~---~---~~~~~~ki~~l~~~~ 58 (115)
..|--|.+..+- .++|+|. +.--||+|. . + ....++.|+++++..
T Consensus 119 ~stleEal~a~~---~Gad~I~--TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 119 ARNLGEALRRIS---EGAAMIR--TKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred CCCHHHHHHHHH---CCCCEEE--ecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 444456666666 7899985 444466665 1 1 223567788887764
Q ss_pred CCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 59 PSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 59 ~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
++|+. +.||| |++|+.++.++|||.+++||+||+++||.+.+++|++.+..+
T Consensus 194 -~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 194 -RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred -CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 58997 99999 999999999999999999999999999999999999988754
No 40
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.12 E-value=4.9e-10 Score=83.24 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
..||-|..+.+- .++|||.+ +|. ..+ ..+.++.++...+++|+.+.||||.+|+.++.++|++.+++|
T Consensus 116 ~~T~~E~~~A~~---~Gad~vkl---FPa---~~~---G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 116 CMTVTEIVTALE---AGSEIVKL---FPG---STL---GPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIG 183 (213)
T ss_pred cCCHHHHHHHHH---cCCCEEEE---CCc---ccC---CHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEc
Confidence 346767777766 79999986 552 122 345578888888889999999999999999999999999999
Q ss_pred ccccCC------CCHHHHHHHHHHHHH
Q 033625 89 SSVFGA------PEPAHVISLMRKSVE 109 (115)
Q Consensus 89 saif~~------~d~~~~~~~l~~~~~ 109 (115)
|.++.. +++.+.++++.+.++
T Consensus 184 s~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 184 GELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred hHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 999976 356677777766554
No 41
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.09 E-value=1.2e-09 Score=84.05 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=77.3
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-------------------------------ccchhHHHHHHHH
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-------------------------------KFMPEMMDKVRSL 54 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-------------------------------~~~~~~~~ki~~l 54 (115)
.....|--|.+..+- .++|+|- +.--||+|. +-....++.|+++
T Consensus 118 mad~~~l~EAlrai~---~GadmI~--Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei 192 (287)
T TIGR00343 118 VCGARDLGEALRRIN---EGAAMIR--TKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEV 192 (287)
T ss_pred EccCCCHHHHHHHHH---CCCCEEe--ccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHH
Confidence 344555567777776 7899885 443455554 0012456777777
Q ss_pred HhhCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 55 RNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 55 ~~~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
++.. ++|+. +.||| |++++..+.++|+|.+++||+||+++||.+.+++|.+.+..+
T Consensus 193 ~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 193 LKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred HHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 7754 69998 99999 999999999999999999999999999999999999887654
No 42
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.08 E-value=5.7e-10 Score=80.21 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=62.9
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
..+.++..|..+..- .++||+.+.+++|..+.....+..++.++++++.. ++|+.+.|||+++|++++.++|++++
T Consensus 99 g~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-~~pv~AlGGI~~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 99 GASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-PIPVYALGGITPENIPELREAGADGV 174 (180)
T ss_dssp EEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-SSCEEEESS--TTTHHHHHHTT-SEE
T ss_pred EeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEE
Confidence 344566666444444 68999999999998877766778889999998876 59999999999999999999999999
Q ss_pred EEcccc
Q 033625 86 VAGSSV 91 (115)
Q Consensus 86 v~Gsai 91 (115)
++.|+|
T Consensus 175 Avi~aI 180 (180)
T PF02581_consen 175 AVISAI 180 (180)
T ss_dssp EESHHH
T ss_pred EEEeeC
Confidence 999876
No 43
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.07 E-value=1.1e-09 Score=79.71 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=63.2
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
+..+|+-|..+..- .++|||.+ +|.- . ....+.++++++..+++|+.+.||||++|++++.++|++.+.
T Consensus 110 ~G~~t~~e~~~A~~---~Gadyv~~---Fpt~---~--~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~va 178 (187)
T PRK07455 110 PGALTPTEIVTAWQ---AGASCVKV---FPVQ---A--VGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVG 178 (187)
T ss_pred cCcCCHHHHHHHHH---CCCCEEEE---CcCC---c--ccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEE
Confidence 34678888777776 79999986 6641 1 234566888888777899999999999999999999999999
Q ss_pred EcccccCC
Q 033625 87 AGSSVFGA 94 (115)
Q Consensus 87 ~Gsaif~~ 94 (115)
++|+||+.
T Consensus 179 v~s~i~~~ 186 (187)
T PRK07455 179 LSGQLFPK 186 (187)
T ss_pred EehhcccC
Confidence 99999975
No 44
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.03 E-value=2.3e-09 Score=82.65 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=75.5
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEee------------------------eCCCCCcc------cchhHHHHHHHHHh
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTV------------------------EPGFGGQK------FMPEMMDKVRSLRN 56 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v------------------------~pG~~gq~------~~~~~~~ki~~l~~ 56 (115)
....|--|.+...- .++|+|- +. --||+... .....++.|+++++
T Consensus 126 ad~~~l~EAlrai~---~GadmI~--Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~ 200 (293)
T PRK04180 126 CGARNLGEALRRIA---EGAAMIR--TKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAE 200 (293)
T ss_pred ccCCCHHHHHHHHH---CCCCeee--ccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHH
Confidence 34455556777766 7889884 33 23443322 12345667777777
Q ss_pred hCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 57 RYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 57 ~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
.. ++|+. +.||| |++++..+.++|+|.+++||+||+++||.+.+++|.+.+..+
T Consensus 201 ~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 201 LG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred hC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 54 68998 99999 999999999999999999999999999999999999887654
No 45
>PRK08999 hypothetical protein; Provisional
Probab=98.97 E-value=3.5e-09 Score=81.54 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=65.1
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
.++.+|..+..+..- .++||+.+.++.|.-+.....+-.++.++++++.. ++|+.+.||||.+|++++.++|++++
T Consensus 230 g~S~h~~~~~~~a~~---~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~-~~Pv~AiGGI~~~~~~~~~~~g~~gv 305 (312)
T PRK08999 230 AASCHDAEELARAQR---LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV-PLPVYALGGLGPGDLEEAREHGAQGI 305 (312)
T ss_pred EEecCCHHHHHHHHh---cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHhCCCEE
Confidence 344566555444333 57999999999987665444456677888887764 79999999999999999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
++.|+||
T Consensus 306 a~i~~~~ 312 (312)
T PRK08999 306 AGIRGLW 312 (312)
T ss_pred EEEEEeC
Confidence 9999986
No 46
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.96 E-value=4.1e-09 Score=81.51 Aligned_cols=79 Identities=19% Similarity=0.369 Sum_probs=60.5
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+.+..+|..|..+.+- .++|||++- +|.++.+.+ ++.+++.++++++++.||||.+|++++.++|+|
T Consensus 199 I~VEv~tleea~eA~~---~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD 266 (288)
T PRK07428 199 IEVETETLEQVQEALE---YGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVD 266 (288)
T ss_pred EEEECCCHHHHHHHHH---cCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCC
Confidence 4455666666666655 789999976 444555555 333444467899999999999999999999999
Q ss_pred EEEEcccccCCC
Q 033625 84 CIVAGSSVFGAP 95 (115)
Q Consensus 84 ~iv~Gsaif~~~ 95 (115)
++++|+.+++++
T Consensus 267 ~Isvgsl~~sa~ 278 (288)
T PRK07428 267 YISSSAPITRSP 278 (288)
T ss_pred EEEEchhhhCCC
Confidence 999999998665
No 47
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.94 E-value=5.6e-09 Score=75.72 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
.....|+-|..+..- .++|||.+ +|. .+...+.++++++..+++|+.+.||||++|+.++.++|+|.+
T Consensus 101 i~gv~t~~e~~~A~~---~Gad~i~~---~p~------~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v 168 (190)
T cd00452 101 LPGVATPTEIMQALE---LGADIVKL---FPA------EAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAV 168 (190)
T ss_pred ECCcCCHHHHHHHHH---CCCCEEEE---cCC------cccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEE
Confidence 344556666666655 78999986 442 112455677777777789999999999999999999999999
Q ss_pred EEcccccC
Q 033625 86 VAGSSVFG 93 (115)
Q Consensus 86 v~Gsaif~ 93 (115)
+++|.+|+
T Consensus 169 ~v~s~i~~ 176 (190)
T cd00452 169 GGGSLLPK 176 (190)
T ss_pred EEchhcch
Confidence 99999993
No 48
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.91 E-value=6.1e-09 Score=79.73 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=56.3
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
|.+..+|..+..+..- .++|||++.++. .+.++++.+..+ ++|+++.||||++|++++.++|+|
T Consensus 185 Igvev~s~eea~~A~~---~gaDyI~ld~~~------------~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd 249 (268)
T cd01572 185 IEVEVETLEQLKEALE---AGADIIMLDNMS------------PEELREAVALLKGRVLLEASGGITLENIRAYAETGVD 249 (268)
T ss_pred EEEEECCHHHHHHHHH---cCCCEEEECCcC------------HHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCC
Confidence 4445566655555544 689999985443 244555555433 699999999999999999999999
Q ss_pred EEEEcccccCCC
Q 033625 84 CIVAGSSVFGAP 95 (115)
Q Consensus 84 ~iv~Gsaif~~~ 95 (115)
++++||..++++
T Consensus 250 ~Iav~sl~~~a~ 261 (268)
T cd01572 250 YISVGALTHSAP 261 (268)
T ss_pred EEEEEeeecCCC
Confidence 999999877543
No 49
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.84 E-value=1.3e-08 Score=78.17 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=55.6
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+-+..+|..+..+..- .++|||++..+.|+ .++. ++.+++..+++|+++.||||++|+.++.++|+|
T Consensus 186 IgVev~t~eea~~A~~---~gaD~I~ld~~~p~---------~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd 253 (272)
T cd01573 186 IVVEVDSLEEALAAAE---AGADILQLDKFSPE---------ELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGAD 253 (272)
T ss_pred EEEEcCCHHHHHHHHH---cCCCEEEECCCCHH---------HHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCc
Confidence 3455667666666655 78999998776663 2233 333444446899999999999999999999999
Q ss_pred EEEEcccccCC
Q 033625 84 CIVAGSSVFGA 94 (115)
Q Consensus 84 ~iv~Gsaif~~ 94 (115)
+++ .|+|+.+
T Consensus 254 ~I~-vsai~~a 263 (272)
T cd01573 254 ILV-TSAPYYA 263 (272)
T ss_pred EEE-EChhhcC
Confidence 994 4555544
No 50
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.81 E-value=3.1e-08 Score=76.27 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=55.6
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
|.+..+|..+..+..- .++|||++. .+.++. ++++++.. +++++++.||||.+|++++.++|+|
T Consensus 191 Igvsv~tleea~~A~~---~gaDyI~lD---------~~~~e~---l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd 255 (277)
T PRK08072 191 IEVETETEEQVREAVA---AGADIIMFD---------NRTPDE---IREFVKLVPSAIVTEASGGITLENLPAYGGTGVD 255 (277)
T ss_pred EEEEeCCHHHHHHHHH---cCCCEEEEC---------CCCHHH---HHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCC
Confidence 3455566666666655 789999872 244444 55554432 3588999999999999999999999
Q ss_pred EEEEcccccCCC
Q 033625 84 CIVAGSSVFGAP 95 (115)
Q Consensus 84 ~iv~Gsaif~~~ 95 (115)
++++|+..++++
T Consensus 256 ~IAvg~l~~sa~ 267 (277)
T PRK08072 256 YISLGFLTHSVK 267 (277)
T ss_pred EEEEChhhcCCc
Confidence 999999776543
No 51
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.80 E-value=5.2e-08 Score=71.62 Aligned_cols=85 Identities=18% Similarity=0.329 Sum_probs=63.9
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa 90 (115)
.+.++...+ ..+|++.+- +.+++.+.+. ++.++++++.. .+.|+.+.|||+ ++++..+.++|||.+++||+
T Consensus 131 ~~e~~~~~~--~g~~~i~~t----~~~~~~~~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsa 203 (217)
T cd00331 131 EEELERALA--LGAKIIGIN----NRDLKTFEVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGES 203 (217)
T ss_pred HHHHHHHHH--cCCCEEEEe----CCCccccCcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHH
Confidence 344444441 478999643 4444445433 37778887765 468999999996 49999999999999999999
Q ss_pred ccCCCCHHHHHHHH
Q 033625 91 VFGAPEPAHVISLM 104 (115)
Q Consensus 91 if~~~d~~~~~~~l 104 (115)
|++..||.+.+++|
T Consensus 204 i~~~~~p~~~~~~~ 217 (217)
T cd00331 204 LMRAPDPGAALREL 217 (217)
T ss_pred HcCCCCHHHHHHhC
Confidence 99999998887653
No 52
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.80 E-value=2.9e-08 Score=75.15 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=61.7
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-------hhhHHHHHHcCCCEEEEcccccCCCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSSVFGAPE 96 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-------~~ni~~l~~~Gad~iv~Gsaif~~~d 96 (115)
.++|||-. +|.+ .++.++++.+.. .+|+.+.|||+ .+|++++.++||+++++|++||+++|
T Consensus 168 ~GADyikt-----~~~~------~~~~l~~~~~~~-~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 168 LGADIVKT-----PYTG------DIDSFRDVVKGC-PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred HCCCEEec-----cCCC------CHHHHHHHHHhC-CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 58999974 1221 345566665543 58999999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033625 97 PAHVISLMRKSVED 110 (115)
Q Consensus 97 ~~~~~~~l~~~~~~ 110 (115)
|.+++++|++.+++
T Consensus 236 p~~~~~~l~~~i~~ 249 (258)
T TIGR01949 236 PVGITKAVCKIVHE 249 (258)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
No 53
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.78 E-value=2.7e-08 Score=76.06 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=53.3
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+.+..+|..+..+..- .++|||++.++.| +. ++++.+.. ..+|+++.||||++|++++.++|+|
T Consensus 181 Igvev~t~eea~~A~~---~gaDyI~ld~~~~---------e~---lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd 245 (265)
T TIGR00078 181 IEVEVESLEEAEEAAE---AGADIIMLDNMKP---------EE---IKEAVQLLKGRVLLEASGGITLDNLEEYAETGVD 245 (265)
T ss_pred EEEEeCCHHHHHHHHH---cCCCEEEECCCCH---------HH---HHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCC
Confidence 4455567766666655 7899999855444 33 44443332 2489999999999999999999999
Q ss_pred EEEEcccccC
Q 033625 84 CIVAGSSVFG 93 (115)
Q Consensus 84 ~iv~Gsaif~ 93 (115)
++++ |+++.
T Consensus 246 ~Isv-gait~ 254 (265)
T TIGR00078 246 VISS-GALTH 254 (265)
T ss_pred EEEe-CHHHc
Confidence 9999 55554
No 54
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.78 E-value=1.8e-08 Score=72.47 Aligned_cols=80 Identities=26% Similarity=0.443 Sum_probs=56.3
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
+.+...+..+..+.+- .++|.|++-...|. +.-+-+++++...+++.|++.||||++|+.++.+.|+|+
T Consensus 83 I~VEv~~~ee~~ea~~---~g~d~I~lD~~~~~--------~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~ 151 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE---AGADIIMLDNMSPE--------DLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDV 151 (169)
T ss_dssp EEEEESSHHHHHHHHH---TT-SEEEEES-CHH--------HHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SE
T ss_pred EEEEcCCHHHHHHHHH---hCCCEEEecCcCHH--------HHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCE
Confidence 4445555444444444 68999998766552 222335556666778999999999999999999999999
Q ss_pred EEEcccccCCC
Q 033625 85 IVAGSSVFGAP 95 (115)
Q Consensus 85 iv~Gsaif~~~ 95 (115)
+++||.+.+++
T Consensus 152 isvg~~~~~a~ 162 (169)
T PF01729_consen 152 ISVGSLTHSAP 162 (169)
T ss_dssp EEECHHHHSBE
T ss_pred EEcChhhcCCc
Confidence 99999877654
No 55
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.76 E-value=4.5e-08 Score=75.48 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEEE
Q 033625 11 TSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~iv 86 (115)
|..+....+.+. .++||+.+ .++++.+.+ ..+-.+++|+++++.. ++|+++.| ||+.++++.+.++|++.+.
T Consensus 153 t~~eea~~f~~~-tg~DyLAvaiG~~hg~~~~--~~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 153 TSTTEAKRFAEE-TDVDALAVAIGNAHGMYNG--DPNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred CCHHHHHHHHHh-hCCCEEEEccCCCCCCCCC--CCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 444444554422 48999999 999997743 2345777888888764 79999999 9999999999999999999
Q ss_pred EcccccCCCCHHHHHHHHH
Q 033625 87 AGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 87 ~Gsaif~~~d~~~~~~~l~ 105 (115)
++|+|+. ++.++++++.
T Consensus 229 v~T~i~~--a~~~a~~~~~ 245 (281)
T PRK06806 229 VATATFN--SVITAVNNLV 245 (281)
T ss_pred EhHHHHH--HHHHHHHHHH
Confidence 9999996 5777776654
No 56
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.75 E-value=6e-08 Score=72.03 Aligned_cols=73 Identities=18% Similarity=0.401 Sum_probs=59.2
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-------hhHHHHHHcCCCEEEEcccccCCCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGSSVFGAPE 96 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-------~ni~~l~~~Gad~iv~Gsaif~~~d 96 (115)
.++|||-+ . +.+ .++.++++.+.. ++|+.+.||++. +|++++.++||+.+++|++||+++|
T Consensus 155 ~GaD~Ik~---~--~~~------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 155 LGADIVKT---K--YTG------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HCCCEEEe---c--CCC------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 48999976 1 221 345567666654 588999999865 7799999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 033625 97 PAHVISLMRKSV 108 (115)
Q Consensus 97 ~~~~~~~l~~~~ 108 (115)
|.+.++++++++
T Consensus 223 p~~~~~~~~~~~ 234 (235)
T cd00958 223 PVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 57
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.72 E-value=8.6e-08 Score=73.82 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=53.6
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
|-+..+|..+..+.+- .++|||++- +|.++.+ +++.+.. +++|+++.||||++|++++.++|+|
T Consensus 192 I~VEv~tleea~eA~~---~gaD~I~LD---------~~~~e~l---~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD 256 (277)
T PRK05742 192 VEVEVESLDELRQALA---AGADIVMLD---------ELSLDDM---REAVRLTAGRAKLEASGGINESTLRVIAETGVD 256 (277)
T ss_pred EEEEeCCHHHHHHHHH---cCCCEEEEC---------CCCHHHH---HHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCC
Confidence 3344556444444433 689999763 2344444 4443332 5799999999999999999999999
Q ss_pred EEEEcccccCCC
Q 033625 84 CIVAGSSVFGAP 95 (115)
Q Consensus 84 ~iv~Gsaif~~~ 95 (115)
++++|+..++++
T Consensus 257 ~Isvg~lt~s~~ 268 (277)
T PRK05742 257 YISIGAMTKDVK 268 (277)
T ss_pred EEEEChhhcCCc
Confidence 999999877654
No 58
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.71 E-value=6.9e-08 Score=70.47 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=57.9
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC---CCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF---GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG- 81 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~---~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G- 81 (115)
.++.++..+....+- ..+||+++-+-.++. +|+.+..+. +++++ ..+|+.+.||||++|+.++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~---~~aD~il~dt~~~~~~Gg~g~~~~~~~---l~~~~---~~~PvilaGGI~~~Nv~~~i~~~~ 174 (203)
T cd00405 104 RVKDEEDLEKAAAYA---GEVDAILLDSKSGGGGGGTGKTFDWSL---LRGLA---SRKPVILAGGLTPDNVAEAIRLVR 174 (203)
T ss_pred ecCChhhHHHhhhcc---ccCCEEEEcCCCCCCCCCCcceEChHH---hhccc---cCCCEEEECCCChHHHHHHHHhcC
Confidence 333444444444544 689999886654432 456665444 44443 36899999999999999999999
Q ss_pred CCEEEEcccccCCC
Q 033625 82 ANCIVAGSSVFGAP 95 (115)
Q Consensus 82 ad~iv~Gsaif~~~ 95 (115)
++.+.++|+++.++
T Consensus 175 ~~gvdv~S~ie~~p 188 (203)
T cd00405 175 PYGVDVSSGVETSP 188 (203)
T ss_pred CCEEEcCCcccCCC
Confidence 99999999999763
No 59
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.67 E-value=3.2e-07 Score=69.84 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
.++|+|.+ ++ .+-+.|.++ ++...++.+..|+ .++.+.||| |++++..+.++|+|.+++||+|.+++||.+.+
T Consensus 179 ~gadiIgi---n~-rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 179 LGAPLIGI---NN-RNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred cCCCEEEE---CC-CCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence 58998874 42 222344333 5667777766654 577788888 79999999999999999999999999999998
Q ss_pred HHHHH
Q 033625 102 SLMRK 106 (115)
Q Consensus 102 ~~l~~ 106 (115)
++|..
T Consensus 254 ~~l~~ 258 (260)
T PRK00278 254 RELLG 258 (260)
T ss_pred HHHhc
Confidence 87753
No 60
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.67 E-value=4.5e-07 Score=68.78 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=65.3
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
-+.|+|+-++-.-| +|+.... .+.++.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||...++
T Consensus 143 ~G~~~vmPlg~pIG-sg~gi~~--~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~ 218 (250)
T PRK00208 143 AGCAAVMPLGAPIG-SGLGLLN--PYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMAR 218 (250)
T ss_pred cCCCEeCCCCcCCC-CCCCCCC--HHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHH
Confidence 47888843334445 5555422 3446667665 579999999995 89999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 033625 103 LMRKSVED 110 (115)
Q Consensus 103 ~l~~~~~~ 110 (115)
+++..++.
T Consensus 219 af~~Av~a 226 (250)
T PRK00208 219 AFKLAVEA 226 (250)
T ss_pred HHHHHHHH
Confidence 99988764
No 61
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.65 E-value=5.3e-07 Score=68.31 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=65.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
-+.|+|+-+.-.-| +|+.... .+.|+.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||...++
T Consensus 143 ~G~~~vmPlg~pIG-sg~Gi~~--~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~ 218 (248)
T cd04728 143 AGCAAVMPLGSPIG-SGQGLLN--PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMAR 218 (248)
T ss_pred cCCCEeCCCCcCCC-CCCCCCC--HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHH
Confidence 47888844334445 4554422 4456677666 579999999995 89999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 033625 103 LMRKSVED 110 (115)
Q Consensus 103 ~l~~~~~~ 110 (115)
.++..++.
T Consensus 219 af~~Av~a 226 (248)
T cd04728 219 AFKLAVEA 226 (248)
T ss_pred HHHHHHHH
Confidence 99988764
No 62
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.64 E-value=1.6e-07 Score=71.53 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=58.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhh-------HHHHHHcCCCEEEEcccccCCCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPE 96 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~n-------i~~l~~~Gad~iv~Gsaif~~~d 96 (115)
.++|||= +.|.+ ..+.++++.+.. .+|+.+.|||+.+| +.++.++||+++++|++||+.+|
T Consensus 172 ~GAD~vK-----t~~~~------~~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 172 LGADIVK-----TNYTG------DPESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred HCCCEEe-----eCCCC------CHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 4788882 22332 234455555432 59999999999886 77788999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033625 97 PAHVISLMRKSVED 110 (115)
Q Consensus 97 ~~~~~~~l~~~~~~ 110 (115)
|.+.+++|+.++++
T Consensus 240 p~~~~~~l~~~v~~ 253 (267)
T PRK07226 240 PEAITRAISAVVHE 253 (267)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 63
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.61 E-value=2.9e-07 Score=67.92 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=61.4
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCC
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN 83 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad 83 (115)
.++.|+-+.....- .++||+.+- +-|+++.. .....++.++++++.. ++|+.+.||| +++++..+.+.|||
T Consensus 128 v~v~t~~ea~~a~~---~G~d~i~~~--~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~Gad 201 (219)
T cd04729 128 ADISTLEEALNAAK---LGFDIIGTT--LSGYTEETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGAD 201 (219)
T ss_pred EECCCHHHHHHHHH---cCCCEEEcc--CccccccccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 34555555444333 589998431 22443321 1223456777777765 7999999999 69999999999999
Q ss_pred EEEEcccccCCCCHHH
Q 033625 84 CIVAGSSVFGAPEPAH 99 (115)
Q Consensus 84 ~iv~Gsaif~~~d~~~ 99 (115)
.+.+||+|++.+|+..
T Consensus 202 gV~vGsal~~~~~~~~ 217 (219)
T cd04729 202 AVVVGSAITRPEHITG 217 (219)
T ss_pred EEEEchHHhChHhHhh
Confidence 9999999999888753
No 64
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.58 E-value=5.4e-07 Score=66.52 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=58.8
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccccc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif 92 (115)
+.++.+.+ ..+|++.+.+..+|..+..+....++.++++++.. ++|+.+.|||+. +|+.++.+.|+|.+++||+++
T Consensus 113 ~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 113 EEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 44454442 46899988766554433343334567778777654 689999999997 999999999999999999998
Q ss_pred CCC
Q 033625 93 GAP 95 (115)
Q Consensus 93 ~~~ 95 (115)
+..
T Consensus 190 ~~~ 192 (236)
T cd04730 190 ATE 192 (236)
T ss_pred cCc
Confidence 754
No 65
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.57 E-value=2.4e-07 Score=71.74 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=56.8
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+.+-.+|..|..+.+- .++|.|++- +|.++.+++ +..+++.++++.+++.||||++|++++.++|+|
T Consensus 202 IeVEv~tl~ea~eal~---~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD 269 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA---EGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVD 269 (289)
T ss_pred EEEEcCCHHHHHHHHH---cCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCC
Confidence 3444455554544443 689999986 333444444 444444567899999999999999999999999
Q ss_pred EEEEcccccCCC
Q 033625 84 CIVAGSSVFGAP 95 (115)
Q Consensus 84 ~iv~Gsaif~~~ 95 (115)
+|++|+..++++
T Consensus 270 ~Is~galt~sa~ 281 (289)
T PRK07896 270 YLAVGALTHSVP 281 (289)
T ss_pred EEEeChhhcCCC
Confidence 999999877554
No 66
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.57 E-value=5e-07 Score=66.67 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEE
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVA 87 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~ 87 (115)
+..+.+.... + .++||+.+- .-|+++. ......++.++++++.. ++|+.+.||| +++++..+.+.|||++.+
T Consensus 127 ~t~ee~~~a~-~-~G~d~i~~~--~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 127 STLEEGLAAQ-K-LGFDFIGTT--LSGYTEETKKPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCHHHHHHHH-H-cCCCEEEcC--CceeecCCCCCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4455555544 1 479998542 1233332 12334466788887765 7999999999 699999999999999999
Q ss_pred cccccCCCCHHHH
Q 033625 88 GSSVFGAPEPAHV 100 (115)
Q Consensus 88 Gsaif~~~d~~~~ 100 (115)
||+|++.+++.+.
T Consensus 202 Gsai~~~~~~~~~ 214 (221)
T PRK01130 202 GGAITRPEEITKW 214 (221)
T ss_pred chHhcCCHHHHHH
Confidence 9999986555443
No 67
>PLN02591 tryptophan synthase
Probab=98.57 E-value=1.4e-06 Score=66.29 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=70.5
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN 83 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad 83 (115)
+.|+|+.+.++.+.+. .-++|-+++. .|.+|. .+.+...+.++++|+. .+.|+.+--||+ +++++.+.+.|||
T Consensus 138 v~Ptt~~~ri~~ia~~--~~gFIY~Vs~-~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GAD 213 (250)
T PLN02591 138 TTPTTPTERMKAIAEA--SEGFVYLVSS-TGVTGARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGAD 213 (250)
T ss_pred eCCCCCHHHHHHHHHh--CCCcEEEeeC-CCCcCCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCC
Confidence 4588888888887743 2355554444 455554 3334444558888885 589999999999 9999999999999
Q ss_pred EEEEcccccC----CCCHHHHHHHHHHHHHH
Q 033625 84 CIVAGSSVFG----APEPAHVISLMRKSVED 110 (115)
Q Consensus 84 ~iv~Gsaif~----~~d~~~~~~~l~~~~~~ 110 (115)
++++||++.+ .+++.+..+++.+.+++
T Consensus 214 GvIVGSalVk~i~~~~~~~~~~~~~~~~~~~ 244 (250)
T PLN02591 214 GVIVGSAMVKALGEAKSPEEGLKRLEKLAKS 244 (250)
T ss_pred EEEECHHHHHhhhhccChhHHHHHHHHHHHH
Confidence 9999999865 22455555555555543
No 68
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.55 E-value=2.6e-07 Score=71.07 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=53.4
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
+-.+|-.|..+.+- .++|+|++-. |.++.+.+.-++ +...+++.+++.||||++|++++.++|+|.+
T Consensus 187 VEv~tleea~~A~~---~GaDiI~LDn---------~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~I 254 (273)
T PRK05848 187 IECESLEEAKNAMN---AGADIVMCDN---------MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAI 254 (273)
T ss_pred EEeCCHHHHHHHHH---cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 33444444444444 6899998532 233444443332 2234678899999999999999999999999
Q ss_pred EEcccccCCC
Q 033625 86 VAGSSVFGAP 95 (115)
Q Consensus 86 v~Gsaif~~~ 95 (115)
++|+.+++++
T Consensus 255 svG~l~~sa~ 264 (273)
T PRK05848 255 SSGSLIHQAT 264 (273)
T ss_pred EeChhhcCCC
Confidence 9999888654
No 69
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.55 E-value=9.4e-07 Score=61.86 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=60.6
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHc
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~ 80 (115)
.+++.+++.+..+.....- .++|++.+....++..++...+.....+.++++ ..++|+.++|||+. +++..+.++
T Consensus 116 ~v~~~~~~~~~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 116 KVVVKLSPTGELAAAAAEE---AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred eEEEEECCCCccchhhHHH---cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHh
Confidence 4566777766655432122 579999988888776665554433344554444 35799999999999 999999999
Q ss_pred CCCEEEEcc
Q 033625 81 GANCIVAGS 89 (115)
Q Consensus 81 Gad~iv~Gs 89 (115)
|||.+.+||
T Consensus 192 Gad~v~vgs 200 (200)
T cd04722 192 GADGVIVGS 200 (200)
T ss_pred CCCEEEecC
Confidence 999999986
No 70
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=98.47 E-value=6.7e-07 Score=68.93 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=53.6
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
.+-..| ++...+.++ .++|.|++- +|.++.+.+ ++.+++..+++.+++.||||++|++++.++|+|+
T Consensus 192 eVEv~t-leea~ea~~--~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~ 259 (277)
T TIGR01334 192 TVEADT-IEQALTVLQ--ASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDL 259 (277)
T ss_pred EEECCC-HHHHHHHHH--cCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCE
Confidence 333443 344444441 589999975 233344433 4445555678999999999999999999999999
Q ss_pred EEEcccccCC
Q 033625 85 IVAGSSVFGA 94 (115)
Q Consensus 85 iv~Gsaif~~ 94 (115)
+++|+-.|..
T Consensus 260 is~gal~~a~ 269 (277)
T TIGR01334 260 FITSAPYYAA 269 (277)
T ss_pred EEeCcceecC
Confidence 9999865543
No 71
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.46 E-value=1.3e-06 Score=67.83 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=70.6
Q ss_pred CCHHhHHHhHhCCCCCCEEEEE--eeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEE
Q 033625 11 TSVEEVYPLVEGANPVEMVLVM--TVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCI 85 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm--~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~i 85 (115)
|..+....+.+ .++||+-+- ++|--|.+. + .-.+++|+++++..+++|+++.|| |+.++++.+.++|++.+
T Consensus 154 t~peea~~f~~--tgvD~LAv~iG~vHG~y~t~~k--~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki 229 (293)
T PRK07315 154 APIEDAKAMVE--TGIDFLAAGIGNIHGPYPENWE--GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred CCHHHHHHHHH--cCCCEEeeccccccccCCCCCC--cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 55555555552 689999887 775555442 3 356778888888765699999999 99999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHHH
Q 033625 86 VAGSSVFGAPEPAHVISLMRKS 107 (115)
Q Consensus 86 v~Gsaif~~~d~~~~~~~l~~~ 107 (115)
.++|+++. ++.++++++.+.
T Consensus 230 Nv~T~i~~--~~~~~~~~~~~~ 249 (293)
T PRK07315 230 NVNTECQI--AFANATRKFARD 249 (293)
T ss_pred EEccHHHH--HHHHHHHHHHHh
Confidence 99999985 667776666543
No 72
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.45 E-value=6.1e-07 Score=66.96 Aligned_cols=59 Identities=19% Similarity=0.421 Sum_probs=51.3
Q ss_pred HHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 52 RSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 52 ~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
..+++.. +++++.|.|||++++.+..-+.++|++|+|++|.+++||.++++++++.+++
T Consensus 154 ~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 154 ARMKALSDIGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDA 213 (218)
T ss_pred HHHHHHhCCCCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHH
Confidence 3344432 3577999999999999999999999999999999999999999999998865
No 73
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.45 E-value=7.8e-07 Score=68.60 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=54.9
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHH-HHhhC--CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNRY--PSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~-l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+-.+|..+..+.+- .++|.|++-... ++.+.++.+ +++.+ +++.+++.||||.+|++++.++|+|
T Consensus 187 VEv~~leea~~a~~---agaDiI~LDn~~---------~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD 254 (278)
T PRK08385 187 VEVESLEDALKAAK---AGADIIMLDNMT---------PEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVD 254 (278)
T ss_pred EEeCCHHHHHHHHH---cCcCEEEECCCC---------HHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 33444444444444 689999875443 445555443 44433 5788999999999999999999999
Q ss_pred EEEEcccccCCC
Q 033625 84 CIVAGSSVFGAP 95 (115)
Q Consensus 84 ~iv~Gsaif~~~ 95 (115)
++++|+..++++
T Consensus 255 ~Is~galt~sa~ 266 (278)
T PRK08385 255 VISLGALTHSVR 266 (278)
T ss_pred EEEeChhhcCCC
Confidence 999999877553
No 74
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.44 E-value=3.8e-06 Score=62.30 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=59.9
Q ss_pred CCCCEEEEEeeeC-CCC-C-cccchhHHHH-HHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625 24 NPVEMVLVMTVEP-GFG-G-QKFMPEMMDK-VRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPA 98 (115)
Q Consensus 24 ~~vD~vlvm~v~p-G~~-g-q~~~~~~~~k-i~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~ 98 (115)
...|+|-++++.. |.+ + +...++..+. ++.+++...+.|+.+-||| +++.+..+.+.|+|.+++||++.+.+|+.
T Consensus 133 ~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~ 212 (223)
T PRK04302 133 LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPE 212 (223)
T ss_pred CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHH
Confidence 3578888776532 322 1 1123344333 4445554457999999999 67778888889999999999999999999
Q ss_pred HHHHHHHHH
Q 033625 99 HVISLMRKS 107 (115)
Q Consensus 99 ~~~~~l~~~ 107 (115)
+.++++.+.
T Consensus 213 ~~~~~~~~~ 221 (223)
T PRK04302 213 AALRDLVSP 221 (223)
T ss_pred HHHHHHHhh
Confidence 988877643
No 75
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=98.42 E-value=2.2e-06 Score=66.30 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=53.7
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+.+-..|..+..+.+- .++|.|++ ..|.++.+.+.-++ ++..+++.+++.||||++|++++.++|+|
T Consensus 192 IeVEv~tleqa~ea~~---agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD 259 (284)
T PRK06096 192 IVVEADTPKEAIAALR---AQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIR 259 (284)
T ss_pred EEEECCCHHHHHHHHH---cCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCC
Confidence 3444444444444433 58999998 24555565554443 33356789999999999999999999999
Q ss_pred EEEEcccccCC
Q 033625 84 CIVAGSSVFGA 94 (115)
Q Consensus 84 ~iv~Gsaif~~ 94 (115)
++++|+- +.+
T Consensus 260 ~Is~gal-~~a 269 (284)
T PRK06096 260 LFITSAP-YYA 269 (284)
T ss_pred EEEECcc-ccC
Confidence 9988875 443
No 76
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.41 E-value=1.2e-06 Score=65.60 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=44.5
Q ss_pred cEEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 62 DIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 62 ~i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
.+.+.+||+++ +..+..+.|+|++|+|++||+++||.++++++++.+..
T Consensus 170 ~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~~ 229 (230)
T PRK00230 170 FLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIAG 229 (230)
T ss_pred eEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhhc
Confidence 45788999988 79999999999999999999999999999999988754
No 77
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.34 E-value=3.7e-06 Score=62.23 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
||-|....+- .+.|.|= ++|... + ....-++.++.-.|++++...|||+.+|+.++.++|+..+.+||.
T Consensus 110 TptEi~~A~~---~Ga~~vK---lFPA~~---~--GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~ 178 (204)
T TIGR01182 110 TPSEIMLALE---LGITALK---LFPAEV---S--GGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSW 178 (204)
T ss_pred CHHHHHHHHH---CCCCEEE---ECCchh---c--CCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChh
Confidence 5556666555 5667664 344310 1 013447777777889999999999999999999999999999999
Q ss_pred ccCCCCHH-HHHHHHHHHHHH
Q 033625 91 VFGAPEPA-HVISLMRKSVED 110 (115)
Q Consensus 91 if~~~d~~-~~~~~l~~~~~~ 110 (115)
||+.+... ..++++++..++
T Consensus 179 L~~~~~~~~~~~~~i~~~a~~ 199 (204)
T TIGR01182 179 LVPKDLIAAGDWDEITRLARE 199 (204)
T ss_pred hcCchhhccccHHHHHHHHHH
Confidence 99755332 234444444433
No 78
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.31 E-value=5.7e-06 Score=61.52 Aligned_cols=88 Identities=11% Similarity=0.125 Sum_probs=57.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
||-|..+.+- .++|+|=+ +|. +.+. ...-++.++.-.|++++.+.|||+.+|+++++++|+-.++.||.
T Consensus 117 TptEi~~a~~---~Ga~~vKl---FPa---~~~g--g~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~ 185 (212)
T PRK05718 117 TPSELMLGME---LGLRTFKF---FPA---EASG--GVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSW 185 (212)
T ss_pred CHHHHHHHHH---CCCCEEEE---ccc---hhcc--CHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChH
Confidence 5555444433 56666643 442 1111 34557777777889999999999999999999999666666777
Q ss_pred ccCCCCHH-HHHHHHHHHHH
Q 033625 91 VFGAPEPA-HVISLMRKSVE 109 (115)
Q Consensus 91 if~~~d~~-~~~~~l~~~~~ 109 (115)
+|+.+... ..++++++..+
T Consensus 186 L~~~~~~~~~~~~~i~~~a~ 205 (212)
T PRK05718 186 MVPKDAIENGDWDRITRLAR 205 (212)
T ss_pred hCCcchhccccHHHHHHHHH
Confidence 88654332 23444444333
No 79
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.30 E-value=1.6e-05 Score=60.69 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=61.8
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG 81 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G 81 (115)
.-+.|.|+.+.++.+.+. .-++|-+++. -|.+|. .+.+...+.++++|+.. +.|+.+-+|| |++++..+.+.
T Consensus 147 ~lvap~t~~eri~~i~~~--s~gfIY~vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~- 221 (258)
T PRK13111 147 FLVAPTTTDERLKKIASH--ASGFVYYVSR-AGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV- 221 (258)
T ss_pred EEeCCCCCHHHHHHHHHh--CCCcEEEEeC-CCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-
Confidence 346788988888887743 3445554444 233443 34455666788888865 7999999999 78999999885
Q ss_pred CCEEEEcccccC
Q 033625 82 ANCIVAGSSVFG 93 (115)
Q Consensus 82 ad~iv~Gsaif~ 93 (115)
||++++||++.+
T Consensus 222 ADGviVGSaiv~ 233 (258)
T PRK13111 222 ADGVIVGSALVK 233 (258)
T ss_pred CCEEEEcHHHHH
Confidence 999999999875
No 80
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.25 E-value=5.1e-06 Score=64.19 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=49.9
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVA 87 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~ 87 (115)
.+|..+..+.+- .++|.|++-...| +. ++++.+. ....++++.||||++|++++.++|+|++++
T Consensus 201 v~tleea~ea~~---~gaDiI~LDn~s~---------e~---l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~ 265 (281)
T PRK06106 201 VDTLDQLEEALE---LGVDAVLLDNMTP---------DT---LREAVAIVAGRAITEASGRITPETAPAIAASGVDLISV 265 (281)
T ss_pred eCCHHHHHHHHH---cCCCEEEeCCCCH---------HH---HHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 343334444433 5899999865544 33 3333222 235679999999999999999999999999
Q ss_pred cccccCCC
Q 033625 88 GSSVFGAP 95 (115)
Q Consensus 88 Gsaif~~~ 95 (115)
|+..++++
T Consensus 266 Galthsa~ 273 (281)
T PRK06106 266 GWLTHSAP 273 (281)
T ss_pred ChhhcCCC
Confidence 98776543
No 81
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.21 E-value=5.2e-06 Score=64.39 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=52.7
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
|.+-..|..+..+.+- .++|.|++-...| +.+.+.-++.+ .++.+++.||||++|++++.++|+|+
T Consensus 200 IeVEv~tleea~~a~~---agaDiImLDnmsp---------e~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 200 VEVEVESLAAAEEAAA---AGADIIMLDNMSL---------EQIEQAITLIA--GRSRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred EEEECCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHhc--CceEEEEECCCCHHHHHHHHhcCCCE
Confidence 3444555444444433 5899999854444 44444332221 25889999999999999999999999
Q ss_pred EEEcccccCCC
Q 033625 85 IVAGSSVFGAP 95 (115)
Q Consensus 85 iv~Gsaif~~~ 95 (115)
+++|+..++++
T Consensus 266 Is~galthsa~ 276 (290)
T PRK06559 266 VSSGSLTHSAK 276 (290)
T ss_pred EEeCccccCCc
Confidence 99998776554
No 82
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.18 E-value=7e-06 Score=63.79 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=53.1
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
|.+-..|..+..+.+- .++|.|++-...| +.+.+.-++. ..++.+++.||||++|++++.++|+|+
T Consensus 208 IeVEvetleea~eA~~---aGaDiImLDnmsp---------e~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 208 VQIEVETLAQLETALA---HGAQSVLLDNFTL---------DMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred EEEEcCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 3444555444444443 5899999854443 4433322221 236789999999999999999999999
Q ss_pred EEEcccccCCC
Q 033625 85 IVAGSSVFGAP 95 (115)
Q Consensus 85 iv~Gsaif~~~ 95 (115)
+++|+..++++
T Consensus 274 IS~galthsa~ 284 (294)
T PRK06978 274 ISIGALTKDVR 284 (294)
T ss_pred EEeCccccCCc
Confidence 99998777655
No 83
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.16 E-value=1.6e-05 Score=58.74 Aligned_cols=89 Identities=15% Similarity=-0.012 Sum_probs=60.3
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
||-|....+- .+.|.|= ++|+.. + ....-++.++.-.|++++...|||+.+|+.+++++|+...+.||.
T Consensus 106 TptEi~~A~~---~Ga~~vK---~FPa~~---~--GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~ 174 (201)
T PRK06015 106 TPSEVMALRE---EGYTVLK---FFPAEQ---A--GGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSW 174 (201)
T ss_pred CHHHHHHHHH---CCCCEEE---ECCchh---h--CCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchh
Confidence 5555555555 5666664 445311 0 012347777777899999999999999999999999999989999
Q ss_pred ccCCCCHH-HHHHHHHHHHHH
Q 033625 91 VFGAPEPA-HVISLMRKSVED 110 (115)
Q Consensus 91 if~~~d~~-~~~~~l~~~~~~ 110 (115)
++..+... +.++++++..++
T Consensus 175 l~~~~~~~~~~~~~i~~~a~~ 195 (201)
T PRK06015 175 VAPKELVAAGDWAGITKLAAE 195 (201)
T ss_pred hCCchhhhcccHHHHHHHHHH
Confidence 99654332 344555554444
No 84
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=98.15 E-value=1.1e-05 Score=62.11 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=53.3
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
++|..+..+.+- .++|.|++-...| +.+.+.-++.....++.+++.||||++|++.+.+.|+|.|++|
T Consensus 195 vesle~~~eAl~---agaDiImLDNm~~---------e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 195 VESLEEAEEALE---AGADIIMLDNMSP---------EELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred cCCHHHHHHHHH---cCCCEEEecCCCH---------HHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 344444444444 6899999864444 4444433333444578899999999999999999999999999
Q ss_pred ccccCCC
Q 033625 89 SSVFGAP 95 (115)
Q Consensus 89 saif~~~ 95 (115)
+-..+.+
T Consensus 263 alths~~ 269 (280)
T COG0157 263 ALTHSAP 269 (280)
T ss_pred ccccCCc
Confidence 7666554
No 85
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=98.15 E-value=8.1e-06 Score=63.52 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=51.6
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
+.+-.+| ++...+.++ .++|.|++-...| +.+.+.-++ ...++.+++.||||++|++++.++|+|+
T Consensus 211 IeVEv~s-leea~ea~~--~gaDiI~LDn~s~---------e~~~~av~~--~~~~~~ieaSGGI~~~ni~~yA~tGVD~ 276 (296)
T PRK09016 211 VEVEVEN-LDELDQALK--AGADIIMLDNFTT---------EQMREAVKR--TNGRALLEVSGNVTLETLREFAETGVDF 276 (296)
T ss_pred EEEEeCC-HHHHHHHHH--cCCCEEEeCCCCh---------HHHHHHHHh--hcCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 4455555 444444442 5799999865444 333332221 1246889999999999999999999999
Q ss_pred EEEcccccCC
Q 033625 85 IVAGSSVFGA 94 (115)
Q Consensus 85 iv~Gsaif~~ 94 (115)
|++|+..-++
T Consensus 277 Is~galthsa 286 (296)
T PRK09016 277 ISVGALTKHV 286 (296)
T ss_pred EEeCccccCC
Confidence 9999855444
No 86
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.15 E-value=5.3e-05 Score=58.24 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=64.6
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhH
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTI 74 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni 74 (115)
..+...+++ .++|+|.+....+| ++|....+..++.+.++++.. ++||.+.||| +.+.+
T Consensus 172 ~~~a~~l~~-~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da 249 (300)
T TIGR01037 172 TEIAKAAEE-AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIPIIGVGGITSFEDA 249 (300)
T ss_pred HHHHHHHHH-cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEECCCCCHHHH
Confidence 344444544 58999987532222 233333334556777777764 6999999999 79999
Q ss_pred HHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHHH
Q 033625 75 AEAASAGANCIVAGSSVFGAPEP-AHVISLMRKSVED 110 (115)
Q Consensus 75 ~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~~~~~ 110 (115)
.+++.+|||.+.+|++++..++. .+..+.|.+.+++
T Consensus 250 ~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 250 LEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 99999999999999998877654 3444445555554
No 87
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=98.14 E-value=5.5e-06 Score=61.13 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=38.6
Q ss_pred cEEEEcCCChh---hH--------HHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625 62 DIEVDGGLGPS---TI--------AEAASAGANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 62 ~i~~dGGI~~~---ni--------~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
.+.+.+||+++ .. +.+.++|||++|+||+||+++||.+++++++
T Consensus 159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 159 FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence 47899999977 43 8899999999999999999999999988764
No 88
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.11 E-value=1.4e-05 Score=61.67 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=62.5
Q ss_pred CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|.++...++.+. -++||+- +.++++-|.+.+ .-.+++|+++++.. ++|+++.| ||+.++++++.++|++.+
T Consensus 152 ~t~~eea~~f~~~-tgvD~Lavs~Gt~hg~~~~~~--~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDEAEQFVKE-TGVDYLAAAIGTSHGKYKGEP--GLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHHHHHHHHH-HCcCEEeeccCccccccCCCC--ccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 3566666666632 3799998 677787777643 23477888888765 69999999 999999999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
.+++.+.
T Consensus 228 Nv~T~l~ 234 (282)
T TIGR01859 228 NIDTDCR 234 (282)
T ss_pred EECcHHH
Confidence 9998875
No 89
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.11 E-value=1e-05 Score=62.58 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~ 95 (115)
.++|.|++-...| +.+.+.-.+. .....+++.||||.+|+.++.++|+|++++|+..++.+
T Consensus 212 ~gaDiImLDn~s~---------e~l~~av~~~--~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 212 AGVDTIMLDNFSL---------DDLREGVELV--DGRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred cCCCEEEECCCCH---------HHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 5899999754433 4433322222 13468999999999999999999999999998776654
No 90
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.11 E-value=6.6e-05 Score=57.80 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=64.3
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHH
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIA 75 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~ 75 (115)
.+...+++ .++|.|.+....+| ++|....+..++.+.++++.. ++|+.+.||| +.+.+.
T Consensus 173 ~~a~~l~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 173 EIAKAAEE-AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAI 250 (301)
T ss_pred HHHHHHHH-cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHH
Confidence 33444433 57898876543333 333333455677888888764 7999999999 799999
Q ss_pred HHHHcCCCEEEEcccccCCCCHH-HHHHHHHHHHHH
Q 033625 76 EAASAGANCIVAGSSVFGAPEPA-HVISLMRKSVED 110 (115)
Q Consensus 76 ~l~~~Gad~iv~Gsaif~~~d~~-~~~~~l~~~~~~ 110 (115)
+++.+|||.+.+|++++..++.- +..+.+.+.+++
T Consensus 251 ~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 251 EFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred HHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999988755543 333334444443
No 91
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=98.11 E-value=2e-05 Score=61.68 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=47.4
Q ss_pred CCCEEEEEee--eCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625 25 PVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 25 ~vD~vlvm~v--~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~ 95 (115)
++|.|++-.. .|.-..+ ..+.+++..+. ....++++.||||.+|+.++.++|+|++++|+..++++
T Consensus 229 gaDiImLDnm~~~~~~~~~-----~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 229 SLTRVMLDNMVVPLENGDV-----DVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCEEEeCCCcccccccCC-----CHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCCC
Confidence 6999998766 4443322 22333433332 23578999999999999999999999999998776543
No 92
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.10 E-value=0.0001 Score=56.47 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=53.6
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHHH
Q 033625 38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEP-AHVISLMRKSVED 110 (115)
Q Consensus 38 ~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~~~~~ 110 (115)
++|....+..++.++++++.. ++||.+.||| +.+++.+++.+|||.+-+|++++..++. .+..+.+.+.+++
T Consensus 210 ~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 210 LSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred ecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 445555556777788887764 7999999999 7899999999999999999998875554 3333445444443
No 93
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.10 E-value=4.2e-05 Score=56.10 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=62.9
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIV 86 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv 86 (115)
..|-.|.+...- .++|+|. +.--||+.... ...-++.++++++. ++|+.+.|+| +++...+..++||+.+|
T Consensus 99 ist~ee~~~A~~---~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 99 ISTLEEAINAAE---LGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp -SSHHHHHHHHH---TT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred cCCHHHHHHHHH---cCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 344445555544 6899885 66778876543 44567889999875 6999999999 79999999999999999
Q ss_pred EcccccCCCCHHHHHHHHHHHHH
Q 033625 87 AGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 87 ~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
+||+|.+ |..-.+++.+.++
T Consensus 172 VGsAITr---P~~It~~F~~ai~ 191 (192)
T PF04131_consen 172 VGSAITR---PQEITKRFVDAIK 191 (192)
T ss_dssp E-HHHH----HHHHHHHHHHHCH
T ss_pred ECcccCC---HHHHHHHHHHHHh
Confidence 9999985 5555566655443
No 94
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.08 E-value=2.3e-05 Score=58.75 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh--hhHHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~--~ni~~l~~~Gad~iv~G 88 (115)
||-|....+- .+.|+|= ++|.-. ....-++.++.-.|++++...|||+. +|+.+++++|+..+.+|
T Consensus 121 TpsEi~~A~~---~Ga~~vK---lFPA~~------~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~G 188 (222)
T PRK07114 121 SLSEIGYAEE---LGCEIVK---LFPGSV------YGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMG 188 (222)
T ss_pred CHHHHHHHHH---CCCCEEE---ECcccc------cCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEC
Confidence 5556666655 6777765 445211 12344777777788999999999998 89999999999999999
Q ss_pred ccccCCC
Q 033625 89 SSVFGAP 95 (115)
Q Consensus 89 saif~~~ 95 (115)
|.+|..+
T Consensus 189 s~L~~~~ 195 (222)
T PRK07114 189 SKLIPKE 195 (222)
T ss_pred hhhcCcc
Confidence 9999644
No 95
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.08 E-value=8.3e-06 Score=60.03 Aligned_cols=74 Identities=27% Similarity=0.387 Sum_probs=52.7
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
||-|....+- .++|+|= ++|.-. + ....-++.++.-.|++++...|||+.+|++++.++|+..+++||.
T Consensus 110 TptEi~~A~~---~G~~~vK---~FPA~~---~--GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~ 178 (196)
T PF01081_consen 110 TPTEIMQALE---AGADIVK---LFPAGA---L--GGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSW 178 (196)
T ss_dssp SHHHHHHHHH---TT-SEEE---ETTTTT---T--THHHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESG
T ss_pred CHHHHHHHHH---CCCCEEE---Eecchh---c--CcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECch
Confidence 5555555555 5667664 455311 1 124557888887889999999999999999999999999999999
Q ss_pred ccCCC
Q 033625 91 VFGAP 95 (115)
Q Consensus 91 if~~~ 95 (115)
+|+.+
T Consensus 179 L~~~~ 183 (196)
T PF01081_consen 179 LFPKD 183 (196)
T ss_dssp GGSHH
T ss_pred hcCHH
Confidence 99854
No 96
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.02 E-value=5.5e-05 Score=57.68 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred CCCCEEEEEeeeC------------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625 24 NPVEMVLVMTVEP------------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGAN 83 (115)
Q Consensus 24 ~~vD~vlvm~v~p------------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad 83 (115)
.++|+|.+-...+ |++|....+..++.++++++..+ ++||.+.|||+ .+++.+++.+|||
T Consensus 188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd 267 (289)
T cd02810 188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGAS 267 (289)
T ss_pred cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCcc
Confidence 4699998753322 22333334456777888888765 79999999997 7999999999999
Q ss_pred EEEEcccccCC-CCHHH
Q 033625 84 CIVAGSSVFGA-PEPAH 99 (115)
Q Consensus 84 ~iv~Gsaif~~-~d~~~ 99 (115)
.+-+|++++.. ++.-.
T Consensus 268 ~V~vg~a~~~~GP~~~~ 284 (289)
T cd02810 268 AVQVATALMWDGPDVIR 284 (289)
T ss_pred HheEcHHHHhcCccHHH
Confidence 99999999876 66533
No 97
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.02 E-value=6.6e-05 Score=55.80 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
.+++..+.+. + .++|.+.+..+.+.-..+. ..++.++++++.. ++|+.+.|||+ .+++..+.++|++.+++||
T Consensus 150 ~~~~~~~~~~-~-~G~~~i~~~~~~~~g~~~g---~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 150 TPVEAAKRFE-E-LGAGSILFTNVDVEGLLEG---VNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGS 223 (241)
T ss_pred CHHHHHHHHH-H-cCCCEEEEEeecCCCCcCC---CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEH
Confidence 3455555554 2 4799999888765322122 2345567777654 69999999999 8999999999999999999
Q ss_pred cccCCCC
Q 033625 90 SVFGAPE 96 (115)
Q Consensus 90 aif~~~d 96 (115)
++|+.+.
T Consensus 224 a~~~~~~ 230 (241)
T PRK13585 224 ALYKGKF 230 (241)
T ss_pred HHhcCCc
Confidence 9998654
No 98
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00012 Score=54.49 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI 85 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~i 85 (115)
.+|..|.+...- .++|+|. +.-.||++. .....-+..++++++ .++++.+.|.++ ++..+...+.||+.+
T Consensus 134 ~St~ee~l~a~~---~G~D~IG--TTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aV 206 (229)
T COG3010 134 CSTFEEGLNAHK---LGFDIIG--TTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAV 206 (229)
T ss_pred cCCHHHHHHHHH---cCCcEEe--cccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEE
Confidence 455556666655 7899986 677788773 233446777888877 479999999985 899999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHHHHHH
Q 033625 86 VAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 86 v~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
++||+|.+ |++-++++.+.+++
T Consensus 207 vVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 207 VVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred EECcccCC---HHHHHHHHHHHHhc
Confidence 99999985 56666666666553
No 99
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=5.1e-05 Score=56.44 Aligned_cols=81 Identities=17% Similarity=0.401 Sum_probs=61.1
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
..|++.++.+.. .++|++.+--.+....+.. ...+.++++++.. +.|+.+.|||+ .+.+..+.++|||.+++|
T Consensus 32 ~~~~e~a~~~~~--~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVD--AGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 467788888772 4799998766654444433 2345677777664 68999999999 678899999999999999
Q ss_pred ccccCCCC
Q 033625 89 SSVFGAPE 96 (115)
Q Consensus 89 saif~~~d 96 (115)
+..++.++
T Consensus 106 s~~~~~~~ 113 (241)
T PRK13585 106 TAAVENPE 113 (241)
T ss_pred hHHhhChH
Confidence 99986543
No 100
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.95 E-value=4.4e-05 Score=57.94 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=41.4
Q ss_pred CCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625 60 SLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108 (115)
Q Consensus 60 ~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~ 108 (115)
.+|++ +.||| |+.....+.+.|+|++-+||.||+++||.+.++.+-+..
T Consensus 206 rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~ 257 (296)
T COG0214 206 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEAT 257 (296)
T ss_pred CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHH
Confidence 35543 77776 789999999999999999999999999999988877543
No 101
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.91 E-value=9.5e-05 Score=54.52 Aligned_cols=82 Identities=18% Similarity=0.349 Sum_probs=62.1
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVA 87 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~ 87 (115)
...|++..+.|.+ .++|.+-+...+..+.++...... ++++++.. ++|+.+.|||+. +.+..+.++|||.+++
T Consensus 28 ~~dp~~~a~~~~~--~g~d~l~v~dl~~~~~~~~~~~~~---i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEE--AGAKWLHVVDLDGAKGGEPVNLEL---IEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEECCCccccCCCCCHHH---HHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 3466677777662 479999988777777666655444 55555554 699999999876 8999999999999999
Q ss_pred cccccCCCC
Q 033625 88 GSSVFGAPE 96 (115)
Q Consensus 88 Gsaif~~~d 96 (115)
|++.+..++
T Consensus 102 gs~~l~dp~ 110 (234)
T cd04732 102 GTAAVKNPE 110 (234)
T ss_pred CchHHhChH
Confidence 999886543
No 102
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.89 E-value=0.0001 Score=55.70 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
..|++..+.|.+ .++|.+-+.=.+....|.....+ -++++.+.. .|++++|||+ .+.+..+.++|||-+|+|
T Consensus 30 ~dP~~~A~~~~~--~ga~~lhivDLd~a~~g~~~n~~---~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvig 102 (241)
T PRK14114 30 KDPAELVEKLIE--EGFTLIHVVDLSKAIENSVENLP---VLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVS 102 (241)
T ss_pred CCHHHHHHHHHH--CCCCEEEEEECCCcccCCcchHH---HHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 477888877772 47999998877776666665444 455555554 6999999999 599999999999999999
Q ss_pred ccccCCCCHHHH
Q 033625 89 SSVFGAPEPAHV 100 (115)
Q Consensus 89 saif~~~d~~~~ 100 (115)
|+.++.++.-+.
T Consensus 103 T~a~~~p~~l~~ 114 (241)
T PRK14114 103 SKVLEDPSFLKF 114 (241)
T ss_pred chhhCCHHHHHH
Confidence 999976654333
No 103
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.86 E-value=4.6e-05 Score=57.01 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=51.9
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSV 91 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsai 91 (115)
.+.+..|. --.+++.+=-++-.++|..-.++. ++++++...+.|+.+-||| +.+.++++.++|||.+|+||++
T Consensus 134 ~e~~~ayA---~aae~~g~~ivyLe~SG~~~~~e~---I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai 207 (219)
T cd02812 134 PEDAAAYA---LAAEYLGMPIVYLEYSGAYGPPEV---VRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIV 207 (219)
T ss_pred HHHHHHHH---HHHHHcCCeEEEeCCCCCcCCHHH---HHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 34444444 233444422233346777644444 5555554336899999999 7899999999999999999999
Q ss_pred cCC
Q 033625 92 FGA 94 (115)
Q Consensus 92 f~~ 94 (115)
++.
T Consensus 208 ~~~ 210 (219)
T cd02812 208 EED 210 (219)
T ss_pred hCC
Confidence 975
No 104
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.86 E-value=0.00021 Score=54.69 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=54.6
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCC---H--H
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE---P--A 98 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d---~--~ 98 (115)
...|.|.+-.. -+|+.+..+. ++++++..++.|+.+-||+|++|+.++.+. +|++++||.+=+..+ + .
T Consensus 170 ~~aDavivtG~---~TG~~~d~~~---l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D~ 242 (257)
T TIGR00259 170 GLADAVILSGK---TTGTEVDLEL---LKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKKDGVFNNFVDQ 242 (257)
T ss_pred cCCCEEEECcC---CCCCCCCHHH---HHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcccCCccCCCcCH
Confidence 34899964322 2566665554 555555456789999999999999999887 999999998632121 1 3
Q ss_pred HHHHHHHHHHHHH
Q 033625 99 HVISLMRKSVEDA 111 (115)
Q Consensus 99 ~~~~~l~~~~~~~ 111 (115)
+.+++|.+.+++.
T Consensus 243 ~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 243 ARVSQFVEKVAHG 255 (257)
T ss_pred HHHHHHHHHHHHh
Confidence 4555555555443
No 105
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.84 E-value=0.00014 Score=54.95 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
..|++..+.+. + .++|.+.+.-......++.. .++-++++++.. ++|+.+.|||+ .+.+..+..+|++.+++|
T Consensus 30 ~dp~~~a~~~~-~-~G~~~l~v~Dl~~~~~~~~~---n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYD-E-EGADELVFLDITASSEGRTT---MIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHH-H-cCCCEEEEEcCCcccccChh---hHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 35667777765 2 47999998877766444443 344566666553 68999999998 999999999999999999
Q ss_pred ccccCCCCH
Q 033625 89 SSVFGAPEP 97 (115)
Q Consensus 89 saif~~~d~ 97 (115)
++.+..++.
T Consensus 104 t~~~~~p~~ 112 (254)
T TIGR00735 104 TAAVKNPEL 112 (254)
T ss_pred hhHhhChHH
Confidence 999976543
No 106
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.82 E-value=0.0001 Score=57.70 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=66.8
Q ss_pred EEEecCCCCH---HhHHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625 4 GVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIE 64 (115)
Q Consensus 4 Glal~p~t~~---~~~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~ 64 (115)
.+=|.|.... ..+...+++ .++|+|.+....+ |++|....+..++.+.++++..+ ++||.
T Consensus 206 ~vKl~~~~~~~~~~~ia~~l~~-aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi 284 (327)
T cd04738 206 LVKIAPDLSDEELEDIADVALE-HGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPII 284 (327)
T ss_pred EEEeCCCCCHHHHHHHHHHHHH-cCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEE
Confidence 3445565543 333333433 5899998765321 56666666677888999988754 69999
Q ss_pred EEcCC-ChhhHHHHHHcCCCEEEEcccccCC-CCH
Q 033625 65 VDGGL-GPSTIAEAASAGANCIVAGSSVFGA-PEP 97 (115)
Q Consensus 65 ~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~-~d~ 97 (115)
+.||| |.+.+.++..+|||.+-+||+++.. ++.
T Consensus 285 ~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~ 319 (327)
T cd04738 285 GVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGL 319 (327)
T ss_pred EECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHH
Confidence 99999 8999999999999999999997643 544
No 107
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.82 E-value=0.00016 Score=55.31 Aligned_cols=100 Identities=17% Similarity=0.359 Sum_probs=69.7
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGA 82 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Ga 82 (115)
-+.|.|+.+.++.+.+.+ -.+|-+++. .|.+|.. +.....+.++++|+.. +.|+.+==||+. +.++.+. .||
T Consensus 146 lv~p~t~~~Ri~~i~~~a--~gFiY~vs~-~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~a 220 (259)
T PF00290_consen 146 LVAPTTPEERIKKIAKQA--SGFIYLVSR-MGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGA 220 (259)
T ss_dssp EEETTS-HHHHHHHHHH---SSEEEEESS-SSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTS
T ss_pred EECCCCCHHHHHHHHHhC--CcEEEeecc-CCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccC
Confidence 467899999999988443 345555444 4545443 4455667788888876 899999888875 7888887 899
Q ss_pred CEEEEcccccC-----CCCHHHHHHHHHHHHHH
Q 033625 83 NCIVAGSSVFG-----APEPAHVISLMRKSVED 110 (115)
Q Consensus 83 d~iv~Gsaif~-----~~d~~~~~~~l~~~~~~ 110 (115)
|++|+||++.+ .++..+.++++.+..++
T Consensus 221 DGvIVGSa~v~~i~~~~~~~~~~~~~~~~~~~~ 253 (259)
T PF00290_consen 221 DGVIVGSAFVKIIEENGDDAEKFLKELKEFVRE 253 (259)
T ss_dssp SEEEESHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CEEEECHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 99999999874 34566777777776654
No 108
>PRK06801 hypothetical protein; Provisional
Probab=97.79 E-value=0.0003 Score=54.52 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIV 86 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~iv 86 (115)
.|..+....+.+. -++|++-+ ++.+--+..+.. +-.+++++++++.. ++|+++-|| ++.++++.+.++|++-|-
T Consensus 155 ~T~pe~a~~f~~~-tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KIN 231 (286)
T PRK06801 155 FTDPQLARDFVDR-TGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKIN 231 (286)
T ss_pred CCCHHHHHHHHHH-HCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 5676777777743 58999987 554422212211 24677788887764 699999999 999999999999999999
Q ss_pred EcccccC
Q 033625 87 AGSSVFG 93 (115)
Q Consensus 87 ~Gsaif~ 93 (115)
++|+++.
T Consensus 232 v~T~~~~ 238 (286)
T PRK06801 232 FYTGMSQ 238 (286)
T ss_pred ehhHHHH
Confidence 9999874
No 109
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.78 E-value=0.00019 Score=52.97 Aligned_cols=80 Identities=13% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G 88 (115)
..|++..+.|. + .++|.+.+...+.-+.|+.. .++.++++++.. ++|+.+.|||+. +.+..+.++|||.+++|
T Consensus 30 ~~~~~~a~~~~-~-~g~~~i~v~dld~~~~g~~~---~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWE-D-QGAKWLHLVDLDGAKAGKPV---NLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred CCHHHHHHHHH-H-cCCCEEEEEeCCccccCCcc---cHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 46667677765 2 47999999887544455443 345566666653 689999999985 79999999999999999
Q ss_pred ccccCCC
Q 033625 89 SSVFGAP 95 (115)
Q Consensus 89 saif~~~ 95 (115)
++++..+
T Consensus 104 ~~~l~~~ 110 (233)
T PRK00748 104 TAAVKNP 110 (233)
T ss_pred chHHhCH
Confidence 9999754
No 110
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=97.77 E-value=0.0001 Score=57.44 Aligned_cols=68 Identities=26% Similarity=0.400 Sum_probs=48.4
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~ 95 (115)
++|.|++-+..-. .| ..++..+++++.-+ . ++++.|++.||||++|+..+.+.|+|++.+||.+.+++
T Consensus 211 ~~d~I~lDn~~~~-~G--~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~~ 280 (302)
T cd01571 211 KLDGVRLDTPSSR-RG--VFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred CCcEEEECCCCCC-CC--CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCCC
Confidence 5899987644210 01 12344455554433 2 35788999999999999999999999999999988654
No 111
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.76 E-value=0.00025 Score=53.34 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=61.6
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
+.|++..+.+. + .++|.+.+-....-..++ +..++.++++++.. ++|+.+.|||+ .+.+..+...|+|.+++|
T Consensus 30 ~d~~~~a~~~~-~-~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 30 GDPVELAKRYN-E-EGADELVFLDITASSEGR---DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred CCHHHHHHHHH-H-cCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 35667666665 2 579999988777633333 34556677776654 69999999998 899999999999999999
Q ss_pred ccccCCCC
Q 033625 89 SSVFGAPE 96 (115)
Q Consensus 89 saif~~~d 96 (115)
++.++.++
T Consensus 104 t~~l~~p~ 111 (253)
T PRK02083 104 SAAVANPE 111 (253)
T ss_pred hhHhhCcH
Confidence 99998654
No 112
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.75 E-value=0.00057 Score=52.29 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=60.9
Q ss_pred CCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 25 PVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
+.-.|+-+...-| +|+-. .+.. |+.+++. +++|+.+|+||. ++.+....+.|+|.+-+.|+|++++||.+.++
T Consensus 158 Gc~aVMPlgsPIG-Sg~Gl~n~~~---l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~ 232 (267)
T CHL00162 158 GCATVMPLGSPIG-SGQGLQNLLN---LQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAK 232 (267)
T ss_pred CCeEEeeccCccc-CCCCCCCHHH---HHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHH
Confidence 4445544444444 55655 4544 4555554 579999999995 78899999999999999999999999999999
Q ss_pred HHHHHHH
Q 033625 103 LMRKSVE 109 (115)
Q Consensus 103 ~l~~~~~ 109 (115)
.++..++
T Consensus 233 a~~~AV~ 239 (267)
T CHL00162 233 AMKLAVQ 239 (267)
T ss_pred HHHHHHH
Confidence 8887665
No 113
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.74 E-value=0.00029 Score=51.92 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=57.9
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
.++.+.++.+. + .++|+++++.+......+.. .++.++++++.. ++|+.+.|||+ .+.+..+.+.|+|.+++|
T Consensus 146 ~~~~~~~~~~~-~-~ga~~iii~~~~~~g~~~g~---~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 146 VSLEELAKRFE-E-LGVKAIIYTDISRDGTLSGP---NFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred CCHHHHHHHHH-H-cCCCEEEEEeecCCCccCCC---CHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 34555566655 2 36999999888653222222 245567776654 69999999998 456999999999999999
Q ss_pred ccccCCC
Q 033625 89 SSVFGAP 95 (115)
Q Consensus 89 saif~~~ 95 (115)
|+++..+
T Consensus 220 ~~~~~~~ 226 (234)
T cd04732 220 KALYEGK 226 (234)
T ss_pred HHHHcCC
Confidence 9998765
No 114
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.74 E-value=0.00047 Score=51.42 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=54.7
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEcccc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSV 91 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~Gsai 91 (115)
+..+.+. + .++|++.+..+.+.-+.+.+. ++.++++++. .++|+.+.|||+ ++.+..+.+. |+|.+++|+++
T Consensus 153 ~~~~~l~-~-~G~d~i~v~~i~~~g~~~g~~---~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 153 EWAKEVE-E-LGAGEILLTSMDRDGTKKGYD---LELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred HHHHHHH-H-CCCCEEEEeccCCCCCCCCCC---HHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 3444444 2 589999998776643334433 4445666554 379999999995 8999998886 99999999998
Q ss_pred cCCC
Q 033625 92 FGAP 95 (115)
Q Consensus 92 f~~~ 95 (115)
+...
T Consensus 227 ~~~~ 230 (243)
T cd04731 227 HFGE 230 (243)
T ss_pred HcCC
Confidence 8654
No 115
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.73 E-value=0.0003 Score=51.91 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=59.8
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
.|++..+.|- + .++|.+.+...+.-+.|+.... +.++++++.. ..|+.+.|||+ .+.+..+.++|||.+++|+
T Consensus 29 dp~~~a~~~~-~-~g~~~l~v~dl~~~~~g~~~~~---~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 29 DPVEAAKKWE-E-EGAERIHVVDLDGAKEGGPVNL---PVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred CHHHHHHHHH-H-cCCCEEEEEeCCccccCCCCcH---HHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 5667777764 2 4799999977666666665443 4455555553 68999999987 6999999999999999999
Q ss_pred cccCCC
Q 033625 90 SVFGAP 95 (115)
Q Consensus 90 aif~~~ 95 (115)
+.++.+
T Consensus 103 ~~l~d~ 108 (230)
T TIGR00007 103 AAVENP 108 (230)
T ss_pred HHhhCH
Confidence 998643
No 116
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.69 E-value=0.00039 Score=51.83 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=60.2
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
.|++..+.+. + .++|.+.+..+.....++.. -++.++++++.. ++|+.+.|||+ .+.+..+.+.|+|.+++|+
T Consensus 28 d~~~~a~~~~-~-~G~~~i~i~d~~~~~~~~~~---~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 28 DPVELAKRYN-E-QGADELVFLDITASSEGRET---MLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred CHHHHHHHHH-H-CCCCEEEEEcCCcccccCcc---cHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 4556556554 3 47999998888765333333 345567776653 69999999998 5899999999999999999
Q ss_pred cccCCCCH
Q 033625 90 SVFGAPEP 97 (115)
Q Consensus 90 aif~~~d~ 97 (115)
++++.++.
T Consensus 102 ~~~~~p~~ 109 (243)
T cd04731 102 AAVENPEL 109 (243)
T ss_pred hhhhChHH
Confidence 99976644
No 117
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.68 E-value=0.0002 Score=52.51 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHc-CCCEEEEcccccCCCCHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASA-GANCIVAGSSVFGAPEPAHV 100 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~-Gad~iv~Gsaif~~~d~~~~ 100 (115)
.++|+|.+- .+...| ...+..++.++++++. .++|+.+.||| +.+.+..+.+. |+|.+.+|++++..++.-+.
T Consensus 150 ~Gvd~i~v~---~~~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~ 225 (231)
T cd02801 150 AGASALTVH---GRTREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFRE 225 (231)
T ss_pred hCCCEEEEC---CCCHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHh
Confidence 378999653 332222 1223355667777764 47999999999 79999998887 89999999999987765443
No 118
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.68 E-value=0.0014 Score=51.75 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=61.3
Q ss_pred EEEEe-eeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625 29 VLVMT-VEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 29 vlvm~-v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
+-+|+ -.|=-+|+.. .++. |+.+.+. +++|+.+|+||. ++.+....+.|+|.+-+-|+|.+++||..+++.++
T Consensus 220 ~avmPl~~pIGsg~gv~~p~~---i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 220 VAVMPLGAPIGSGLGIQNPYT---IRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred EEEeeccccccCCCCCCCHHH---HHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 66666 4553377765 3444 5555555 579999999995 78999999999999999999999999999999999
Q ss_pred HHHH
Q 033625 106 KSVE 109 (115)
Q Consensus 106 ~~~~ 109 (115)
...+
T Consensus 296 ~av~ 299 (326)
T PRK11840 296 LAVE 299 (326)
T ss_pred HHHH
Confidence 7765
No 119
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.66 E-value=0.0004 Score=53.03 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=55.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCC---H--H
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE---P--A 98 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d---~--~ 98 (115)
...|.|.+-.... |+. ..+++++++|+..+ +|+.+-+|+|.+|+.++.+. ||++++||.+=+..+ + .
T Consensus 171 ~~aDaviVtG~~T---G~~---~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~ 242 (254)
T PF03437_consen 171 GGADAVIVTGKAT---GEP---PDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDP 242 (254)
T ss_pred cCCCEEEECCccc---CCC---CCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCH
Confidence 5799997643333 343 35667888888776 99999999999999999876 999999998643322 2 4
Q ss_pred HHHHHHHHHH
Q 033625 99 HVISLMRKSV 108 (115)
Q Consensus 99 ~~~~~l~~~~ 108 (115)
+++++|-+..
T Consensus 243 ~Rv~~fm~~v 252 (254)
T PF03437_consen 243 ERVRRFMEAV 252 (254)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 120
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.64 E-value=0.0005 Score=53.18 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=54.1
Q ss_pred CCCCEEEEEeeeCCCCCccc---------chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEccccc
Q 033625 24 NPVEMVLVMTVEPGFGGQKF---------MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVF 92 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~---------~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~Gsaif 92 (115)
.++|||-+- .|+..+.. ....++.++++++.. ++||.+.|||+ .+.+.++++. |+|.+.+|++++
T Consensus 240 ~G~d~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~l 315 (327)
T cd02803 240 AGVDALHVS---GGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALL 315 (327)
T ss_pred cCCCEEEeC---CCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHH
Confidence 368999753 33322211 133445567777664 69999999997 9999999988 899999999999
Q ss_pred CCCCHHHHH
Q 033625 93 GAPEPAHVI 101 (115)
Q Consensus 93 ~~~d~~~~~ 101 (115)
..+++.+.+
T Consensus 316 adP~l~~k~ 324 (327)
T cd02803 316 ADPDLPNKA 324 (327)
T ss_pred hCccHHHHH
Confidence 888875544
No 121
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.63 E-value=0.00062 Score=50.41 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=59.3
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
+|++.++.+- . .++|.+.+.-+.-...++...... ++++++.. +.|+.+.||++ .+.+..+.+.|++.+++|+
T Consensus 31 dp~~~a~~~~-~-~g~~~i~i~dl~~~~~~~~~n~~~---~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 31 DPVNAARIYN-A-KGADELIVLDIDASKRGREPLFEL---ISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CHHHHHHHHH-H-cCCCEEEEEeCCCcccCCCCCHHH---HHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 6777777764 2 579999987776654454444444 55555543 68999999998 5788889999999999999
Q ss_pred cccCCCC
Q 033625 90 SVFGAPE 96 (115)
Q Consensus 90 aif~~~d 96 (115)
+++..++
T Consensus 105 ~~l~~~~ 111 (232)
T TIGR03572 105 AALENPD 111 (232)
T ss_pred hHhcCHH
Confidence 9987653
No 122
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.62 E-value=0.0009 Score=51.11 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=55.5
Q ss_pred CC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625 11 TS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs 89 (115)
.| ++..+.+.+ .+++++=+.=. |.. .. +.++++.+. .+.|+.+-|||+.+++..+.++||+-+++||
T Consensus 38 ~pp~~~A~~~~~--~Ga~~lHvVDL-----g~~-n~---~~i~~i~~~-~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 38 KPSSYYAKLYKD--DGVKGCHVIML-----GPN-ND---DAAKEALHA-YPGGLQVGGGINDTNAQEWLDEGASHVIVTS 105 (253)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEEC-----CCC-cH---HHHHHHHHh-CCCCEEEeCCcCHHHHHHHHHcCCCEEEECc
Confidence 46 888888772 46888766433 333 33 345555554 3699999999999999999999999999999
Q ss_pred cccCCC
Q 033625 90 SVFGAP 95 (115)
Q Consensus 90 aif~~~ 95 (115)
+.|..+
T Consensus 106 ~av~~~ 111 (253)
T TIGR02129 106 WLFTKG 111 (253)
T ss_pred HHHhCC
Confidence 999754
No 123
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00087 Score=51.50 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=59.3
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc--chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA 82 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~--~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga 82 (115)
-..|+|+.+.++.+.+.+.+. |-..++. |.+|..- .....+.++++|+.. ++|+.+==||+ ++.++++.+. |
T Consensus 153 lvaPtt~~~rl~~i~~~a~GF--iY~vs~~-GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-A 227 (265)
T COG0159 153 LVAPTTPDERLKKIAEAASGF--IYYVSRM-GVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-A 227 (265)
T ss_pred EeCCCCCHHHHHHHHHhCCCc--EEEEecc-cccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-C
Confidence 356899999999988554333 3333333 3333322 223566788888876 88988887875 8999999999 9
Q ss_pred CEEEEcccccC
Q 033625 83 NCIVAGSSVFG 93 (115)
Q Consensus 83 d~iv~Gsaif~ 93 (115)
|++|+||++.+
T Consensus 228 DGVIVGSAiV~ 238 (265)
T COG0159 228 DGVIVGSAIVK 238 (265)
T ss_pred CeEEEcHHHHH
Confidence 99999999875
No 124
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.60 E-value=0.00055 Score=51.40 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=60.4
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
.+|++..+.|.+. .++|.+.+.=.+--..|+.-. ++.|+++++. ..+|++++|||+ .+.+..+..+||+-+|+|
T Consensus 31 ~dp~~~a~~~~~~-~Ga~~l~ivDLd~a~~~~~~n---~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 31 RSAEESIAYYSQF-ECVNRIHIVDLIGAKAQHARE---FDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred CCHHHHHHHHHhc-cCCCEEEEEECcccccCCcch---HHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 3667777777621 368999887665554455443 3446666554 368999999996 788999999999999999
Q ss_pred ccccCCCCH
Q 033625 89 SSVFGAPEP 97 (115)
Q Consensus 89 saif~~~d~ 97 (115)
|+.++.++.
T Consensus 106 t~a~~~~~~ 114 (234)
T PRK13587 106 TKGIQDTDW 114 (234)
T ss_pred chHhcCHHH
Confidence 998876543
No 125
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.58 E-value=0.00052 Score=51.39 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=55.1
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
.|++..+.|. +.+|.+.+.-.+--..|+... ++.++++++. ...|+.+.|||+ .+.+..+.+.|+|.+++|+
T Consensus 31 dp~~~a~~~~---~~~~~l~ivDldga~~g~~~n---~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALRFS---EYVDKIHVVDLDGAFEGKPKN---LDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHHHH---HhCCEEEEEECcchhcCCcch---HHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 6777777776 348988885444333454433 3345555554 479999999997 6888999999999999999
Q ss_pred ccc
Q 033625 90 SVF 92 (115)
Q Consensus 90 aif 92 (115)
+.+
T Consensus 104 aa~ 106 (228)
T PRK04128 104 KAF 106 (228)
T ss_pred hhc
Confidence 988
No 126
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.58 E-value=0.00063 Score=51.59 Aligned_cols=80 Identities=14% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gs 89 (115)
.|++..+.|.. .++|.+.+.=+.....++... ++-++++.+. ..+|+.+.||+ +.+.+..+...|++.+++|+
T Consensus 31 dp~~~a~~~~~--~g~~~l~i~Dl~~~~~~~~~n---~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 31 DPINAVRIFNE--KEVDELIVLDIDASKRGSEPN---YELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEEEECCCCcCCCccc---HHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 67777777762 379999987776654444433 4446666655 36899999999 88999999999999999999
Q ss_pred cccCCCC
Q 033625 90 SVFGAPE 96 (115)
Q Consensus 90 aif~~~d 96 (115)
+++..++
T Consensus 105 ~~~~~~~ 111 (258)
T PRK01033 105 AALEDPD 111 (258)
T ss_pred HHhcCHH
Confidence 9987653
No 127
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.56 E-value=0.00038 Score=52.50 Aligned_cols=56 Identities=21% Similarity=0.470 Sum_probs=42.1
Q ss_pred HHHHHHHhhCCCC-cEEEEcCCChh-hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625 49 DKVRSLRNRYPSL-DIEVDGGLGPS-TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107 (115)
Q Consensus 49 ~ki~~l~~~~~~~-~i~~dGGI~~~-ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~ 107 (115)
+.++++++.. +. |+.+-|||+.. +++++..+|||.+|+||++.+ |+.+.++++++.
T Consensus 173 e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 173 EMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred HHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence 3455555543 45 99999999876 999989999999999999985 555555555543
No 128
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.55 E-value=0.00077 Score=51.07 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=58.0
Q ss_pred CCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
-+...|+-++..-| +|+-.. +. -|+.+++.. ++|+.+|+|| +++...+..+.|+|.+.+-|+|.++.||..++
T Consensus 143 ~GcaavMPlgsPIG-Sg~Gi~n~~---~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA 217 (247)
T PF05690_consen 143 AGCAAVMPLGSPIG-SGRGIQNPY---NLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMA 217 (247)
T ss_dssp TT-SEBEEBSSSTT-T---SSTHH---HHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHH
T ss_pred CCCCEEEecccccc-cCcCCCCHH---HHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHH
Confidence 35556665555445 555553 33 356666554 8999999999 58899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 033625 102 SLMRKSVE 109 (115)
Q Consensus 102 ~~l~~~~~ 109 (115)
+.++...+
T Consensus 218 ~Af~~AV~ 225 (247)
T PF05690_consen 218 RAFKLAVE 225 (247)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987665
No 129
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.54 E-value=0.00069 Score=50.89 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G 88 (115)
..|++..+.|.+ .++|.+-+.=.+.-. ++... .+-++++.+... .|++++|||+. +.+..+.+.|||-+|+|
T Consensus 30 ~dP~~~a~~~~~--~ga~~lhivDLd~a~-~~~~n---~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYN--EGYTRIHVVDLDAAE-GVGNN---EMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLDVNALVFS 102 (232)
T ss_pred CCHHHHHHHHHH--CCCCEEEEEECCCcC-CCcch---HHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence 468888888772 479999987776543 44433 345666665322 38999999986 99999999999999999
Q ss_pred ccccCCCC
Q 033625 89 SSVFGAPE 96 (115)
Q Consensus 89 saif~~~d 96 (115)
|..++.++
T Consensus 103 t~a~~~p~ 110 (232)
T PRK13586 103 TIVFTNFN 110 (232)
T ss_pred chhhCCHH
Confidence 99887654
No 130
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.54 E-value=0.00061 Score=50.95 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gs 89 (115)
++.+.++.+. ..++.++++.+....+++....+. ++++.+. .++|+.+-|||+. +.+..+.+.|++.+++||
T Consensus 147 ~~~~~~~~~~---~~~~~li~~di~~~G~~~g~~~~~---~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGs 219 (233)
T cd04723 147 GPEELLRRLA---KWPEELIVLDIDRVGSGQGPDLEL---LERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVAS 219 (233)
T ss_pred CHHHHHHHHH---HhCCeEEEEEcCccccCCCcCHHH---HHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEeh
Confidence 4556666665 448999998887755555544444 4555554 4799999999975 999999999999999999
Q ss_pred cccCCC
Q 033625 90 SVFGAP 95 (115)
Q Consensus 90 aif~~~ 95 (115)
+++...
T Consensus 220 al~~g~ 225 (233)
T cd04723 220 ALHDGG 225 (233)
T ss_pred HHHcCC
Confidence 998653
No 131
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.49 E-value=0.00096 Score=49.41 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHH-HHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE-AASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~-l~~~Gad~iv~Gsa 90 (115)
++..+.+. + .++|.+.+..+.+.-..+.+ -++.++++++.. ++|+.+.|||+ .+.+.. +...|+|.+++|++
T Consensus 156 ~~~~~~~~-~-~G~d~i~i~~i~~~g~~~g~---~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 156 VEWAREAE-Q-LGAGEILLNSIDRDGTMKGY---DLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred HHHHHHHH-H-cCCCEEEEeCCCccCCcCCC---CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 44445544 2 47999999987664333333 255566666653 79999999998 677777 88899999999998
Q ss_pred c
Q 033625 91 V 91 (115)
Q Consensus 91 i 91 (115)
+
T Consensus 230 ~ 230 (232)
T TIGR03572 230 F 230 (232)
T ss_pred h
Confidence 6
No 132
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.49 E-value=0.00094 Score=51.25 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=58.7
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
...|++..+.+.+ .+++++=|.=... |..-. ++-++++++ . ..++.+=|||+.+.+..+.++|||-+++|
T Consensus 42 ~~dP~~~A~~~~~--~Ga~~lHvVDLdg---g~~~n---~~~i~~i~~-~-~~~vqvGGGIR~e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 42 DKSAAEFAEMYKR--DGLTGGHVIMLGA---DDASL---AAALEALRA-Y-PGGLQVGGGVNSENAMSYLDAGASHVIVT 111 (262)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEECCC---CCccc---HHHHHHHHh-C-CCCEEEeCCccHHHHHHHHHcCCCEEEEc
Confidence 3678888888872 4788887755543 33322 445666666 3 58999999999999999999999999999
Q ss_pred ccccCC
Q 033625 89 SSVFGA 94 (115)
Q Consensus 89 saif~~ 94 (115)
|..|+.
T Consensus 112 T~Av~~ 117 (262)
T PLN02446 112 SYVFRD 117 (262)
T ss_pred hHHHhC
Confidence 999975
No 133
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.49 E-value=0.00097 Score=50.58 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=55.5
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHH-HcCCCEEEEcc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAA-SAGANCIVAGS 89 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~-~~Gad~iv~Gs 89 (115)
+.+.++.+. + .+++.+++..+...-+.+.+ -++.++++++. .++|+.+.|||+. +.+..+. +.|+|.+++|+
T Consensus 154 ~~e~~~~~~-~-~g~~~ii~~~i~~~G~~~G~---d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~ 227 (258)
T PRK01033 154 PLELAKEYE-A-LGAGEILLNSIDRDGTMKGY---DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGS 227 (258)
T ss_pred HHHHHHHHH-H-cCCCEEEEEccCCCCCcCCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcc
Confidence 445555554 2 47999999888764333333 34556666665 5799999999976 8999987 89999999999
Q ss_pred cc-cC
Q 033625 90 SV-FG 93 (115)
Q Consensus 90 ai-f~ 93 (115)
++ |.
T Consensus 228 a~~~~ 232 (258)
T PRK01033 228 LFVFK 232 (258)
T ss_pred eeeeC
Confidence 96 54
No 134
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.48 E-value=0.00052 Score=54.17 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=69.8
Q ss_pred eEEEecCCCCH---HhHHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcE
Q 033625 3 PGVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDI 63 (115)
Q Consensus 3 ~Glal~p~t~~---~~~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i 63 (115)
+.+=|+|+... ..+...+++ .++|.|.+....+ |++|....+..++-++++++..+ ++||
T Consensus 214 V~vKlsp~~~~~~~~~ia~~l~~-~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipI 292 (344)
T PRK05286 214 LLVKIAPDLSDEELDDIADLALE-HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPI 292 (344)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHH-hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 34456666553 333333433 5899998876431 34444444557777888877643 6999
Q ss_pred EEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHHH
Q 033625 64 EVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVED 110 (115)
Q Consensus 64 ~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~-~~~~~~l~~~~~~ 110 (115)
...|||+ .+.+.++..+|||.+-+||+++. .++. .+..+.|++.+++
T Consensus 293 ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 9999995 78888888899999999999864 3654 3333344444443
No 135
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.48 E-value=0.0004 Score=51.81 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsa 90 (115)
+.+.++.+. + .++..++++.+.-.-+.+-+..+. ++++++.. +.|+.+.||| +.+.+..+.+.|++.+++|++
T Consensus 149 ~~~~~~~~~-~-~g~~~ii~tdi~~dGt~~G~d~~~---~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~a 222 (229)
T PF00977_consen 149 LEEFAKRLE-E-LGAGEIILTDIDRDGTMQGPDLEL---LKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSA 222 (229)
T ss_dssp HHHHHHHHH-H-TT-SEEEEEETTTTTTSSS--HHH---HHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHH
T ss_pred HHHHHHHHH-h-cCCcEEEEeeccccCCcCCCCHHH---HHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehH
Confidence 345555555 2 478999999988765666555444 55555554 7999999999 789999999999999999999
Q ss_pred ccC
Q 033625 91 VFG 93 (115)
Q Consensus 91 if~ 93 (115)
++.
T Consensus 223 l~~ 225 (229)
T PF00977_consen 223 LHE 225 (229)
T ss_dssp HHT
T ss_pred hhC
Confidence 875
No 136
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.46 E-value=0.0034 Score=49.21 Aligned_cols=103 Identities=12% Similarity=0.203 Sum_probs=68.6
Q ss_pred ecCC-CCHHhHHHhHhCCCCCCEEEEEeee---------------CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 033625 7 LKPG-TSVEEVYPLVEGANPVEMVLVMTVE---------------PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG 70 (115)
Q Consensus 7 l~p~-t~~~~~~~~~~~~~~vD~vlvm~v~---------------pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~ 70 (115)
|.|. +.+..+...+++ .++|.|.+.... .|++|....+..++-+.++++.. ++||...|||.
T Consensus 170 l~p~~~~~~~~a~~l~~-~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~ 247 (325)
T cd04739 170 LSPFFSALAHMAKQLDA-AGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVH 247 (325)
T ss_pred cCCCccCHHHHHHHHHH-cCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-CCCEEEECCCC
Confidence 4444 344444444444 578888775532 23445555566777788887654 79999999995
Q ss_pred -hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHHH
Q 033625 71 -PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVEDA 111 (115)
Q Consensus 71 -~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~~ 111 (115)
.+.+.+.+.+|||.+-++|+++.. ++. ..-.++|.+.+++.
T Consensus 248 s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~ 291 (325)
T cd04739 248 DAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEH 291 (325)
T ss_pred CHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHc
Confidence 677888888999999999998763 433 45555566555543
No 137
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.45 E-value=0.0017 Score=48.85 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=59.8
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHH-cCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAAS-AGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~-~Gad~iv~Gsa 90 (115)
.+.++.+. . .++|.+++..+......|.+. ++.++++++.. ++|+.+.||++. +.+..+.+ .|+|.+++|++
T Consensus 156 ~~~~~~~~-~-~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 156 VEWAKEVE-E-LGAGEILLTSMDRDGTKNGYD---LELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHH-H-cCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 34445544 2 479999987776543445443 45566666653 699999999975 78888776 59999999999
Q ss_pred ccCC-CCHHHHHHHHH
Q 033625 91 VFGA-PEPAHVISLMR 105 (115)
Q Consensus 91 if~~-~d~~~~~~~l~ 105 (115)
++.. -++.+..+.++
T Consensus 230 l~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 230 FHFGEITIGELKAYLA 245 (253)
T ss_pred HHcCCCCHHHHHHHHH
Confidence 8753 45555544443
No 138
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.44 E-value=0.0014 Score=48.41 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=49.5
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGS 89 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gs 89 (115)
+....++. +.+|++|+-+-.| |-+|..|.-..+ . ++. ..|+...|||+++|+.++.+. ++.++=+.|
T Consensus 115 l~~~~~~~---~~~d~~L~Ds~~~~~GGtG~~~dw~~l---~--~~~--~~p~~LAGGi~peNv~~ai~~~~p~gvDvsS 184 (210)
T PRK01222 115 LEAAAAYY---GDADGLLLDAYVGLPGGTGKTFDWSLL---P--AGL--AKPWILAGGLNPDNVAEAIRQVRPYGVDVSS 184 (210)
T ss_pred HHHHHhhh---ccCCEEEEcCCCCCCCCCCCccchHHh---h--hcc--CCCEEEECCCCHHHHHHHHHhcCCCEEEecC
Confidence 33444444 6789999987665 555677654332 1 122 468999999999999998764 788888888
Q ss_pred cccC
Q 033625 90 SVFG 93 (115)
Q Consensus 90 aif~ 93 (115)
.+=.
T Consensus 185 gvE~ 188 (210)
T PRK01222 185 GVES 188 (210)
T ss_pred ceEC
Confidence 8753
No 139
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0012 Score=49.09 Aligned_cols=80 Identities=28% Similarity=0.356 Sum_probs=59.2
Q ss_pred EecCCC--CHHhHHHhHhCCCCCCEEEEEeee---CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 6 ALKPGT--SVEEVYPLVEGANPVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 6 al~p~t--~~~~~~~~~~~~~~vD~vlvm~v~---pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
|++... ..+..+.+. ..+|++++-+-. +|-+||.|.-..+... ....|+...||+|++|+.+..+.
T Consensus 104 ai~v~~~~~~~~~~~~~---~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~p~NV~~ai~~ 174 (208)
T COG0135 104 AISVSEEGDLELAAREE---GPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGLNPDNVAEAIAL 174 (208)
T ss_pred EEEeCCccchhhhhhcc---CCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCCCHHHHHHHHHh
Confidence 444443 356666666 789999998864 5778999876554443 24577999999999999999888
Q ss_pred CC-CEEEEcccccCC
Q 033625 81 GA-NCIVAGSSVFGA 94 (115)
Q Consensus 81 Ga-d~iv~Gsaif~~ 94 (115)
+. .++=+.|.+=.+
T Consensus 175 ~~p~gvDvSSGVE~~ 189 (208)
T COG0135 175 GPPYGVDVSSGVESS 189 (208)
T ss_pred cCCceEEeccccccC
Confidence 87 777777887443
No 140
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.42 E-value=0.0034 Score=49.23 Aligned_cols=102 Identities=12% Similarity=0.179 Sum_probs=67.5
Q ss_pred ecCCC-CHHhHHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 033625 7 LKPGT-SVEEVYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG 70 (115)
Q Consensus 7 l~p~t-~~~~~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~ 70 (115)
+.|.. .+..+...+++ .++|.|.+....+ |++|....+..++-+.++++.. ++||.+.|||.
T Consensus 172 l~p~~~~~~~~a~~l~~-~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~ 249 (334)
T PRK07565 172 LSPYFSNLANMAKRLDA-AGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-GADLAATTGVH 249 (334)
T ss_pred eCCCchhHHHHHHHHHH-cCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCC
Confidence 34542 34555555544 5799987654322 2344444556667777777654 79999999995
Q ss_pred -hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHH
Q 033625 71 -PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVED 110 (115)
Q Consensus 71 -~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~ 110 (115)
.+.+.++..+|||.+-++++++.. ++. .+-.++|++.+++
T Consensus 250 s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~ 292 (334)
T PRK07565 250 DAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMER 292 (334)
T ss_pred CHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHH
Confidence 788888888999999999998863 332 3455555555543
No 141
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=97.41 E-value=0.00053 Score=54.36 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=47.6
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.+|.|++-+..|.++ ...+..+++++..+ . .+++.|++.||||++|+..+.++ +|++.+||.++++
T Consensus 227 ~~d~I~LDn~~~~~g---~l~~~v~~vr~~ld~~g~~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 227 RLDGVRLDTPSSRRG---NFRKIVREVRWTLDIRGYEHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred cCCEEEcCCCCCCCc---cHHHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence 689999877664211 22334444444322 2 25688999999999999999999 9999999998864
No 142
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.39 E-value=0.0014 Score=49.54 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=60.2
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHc-----C-CCE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA-----G-ANC 84 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~-----G-ad~ 84 (115)
+++.++.+. + .++..++++.+.-.-+.+-+..+. ++++++. .++|+.+.||++. +.+..+.+. | ++.
T Consensus 146 ~~e~~~~~~-~-~g~~~ii~tdI~rdGt~~G~d~el---~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~g 219 (241)
T PRK14114 146 PVSLLKRLK-E-YGLEEIVHTEIEKDGTLQEHDFSL---TRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKG 219 (241)
T ss_pred HHHHHHHHH-h-cCCCEEEEEeechhhcCCCcCHHH---HHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEE
Confidence 345555554 2 368899999988765555555444 4555555 4799999999976 899999886 6 999
Q ss_pred EEEcccccCCC-CHHHHH
Q 033625 85 IVAGSSVFGAP-EPAHVI 101 (115)
Q Consensus 85 iv~Gsaif~~~-d~~~~~ 101 (115)
+++|++++... ++++..
T Consensus 220 vivg~Al~~g~i~~~e~~ 237 (241)
T PRK14114 220 VIVGRAFLEGILTVEVMK 237 (241)
T ss_pred EEEehHHHCCCCCHHHHH
Confidence 99999998654 444443
No 143
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=97.38 E-value=0.0012 Score=50.34 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=33.7
Q ss_pred CCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625 59 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 59 ~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
+++.|++.||||++|+..+.+.|+|++.+|+.+++.
T Consensus 238 ~~~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 238 PRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence 578899999999999999999999999999999875
No 144
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.35 E-value=0.0018 Score=48.60 Aligned_cols=80 Identities=13% Similarity=0.306 Sum_probs=60.7
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
.|++..+.|.+ .++|.+.+.=.+- -.|.. ..++.|+++++.. ..|++++|||+ .+.+..+..+||+-+++||
T Consensus 33 dp~~~a~~~~~--~g~~~l~ivDLd~-~~g~~---~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQR--DGAEWIHLVDLDA-AFGRG---SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred CHHHHHHHHHH--CCCCEEEEEeccc-cCCCC---ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 67887777762 4789998876663 22333 2345577776664 68999999997 7899999999999999999
Q ss_pred cccCCCCH
Q 033625 90 SVFGAPEP 97 (115)
Q Consensus 90 aif~~~d~ 97 (115)
+.++.++.
T Consensus 106 ~~l~~p~l 113 (241)
T PRK14024 106 AALENPEW 113 (241)
T ss_pred hHhCCHHH
Confidence 99976654
No 145
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.35 E-value=0.0019 Score=47.61 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gs 89 (115)
++++..+.+. + .++|.+++..+......+.. .++.++++++. .++|+.+-|||+. +.+..+.++|+|.+++||
T Consensus 146 ~~~~~~~~~~-~-~g~~~ii~~~~~~~g~~~g~---~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 146 SLEELAKRLE-E-LGLEGIIYTDISRDGTLSGP---NFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGK 219 (230)
T ss_pred CHHHHHHHHH-h-CCCCEEEEEeecCCCCcCCC---CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeH
Confidence 4455555555 2 47999998887664333332 35566777665 4799999999975 799999999999999999
Q ss_pred cccCC
Q 033625 90 SVFGA 94 (115)
Q Consensus 90 aif~~ 94 (115)
+++..
T Consensus 220 a~~~~ 224 (230)
T TIGR00007 220 ALYEG 224 (230)
T ss_pred HHHcC
Confidence 98754
No 146
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.34 E-value=0.002 Score=52.26 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=54.6
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCccc------chhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHH
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKF------MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAA 78 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~------~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~ 78 (115)
|..|..+...-+- .++|+|.+ +..||. +++.. .-..+..+.++.+. .++||.+|||| +...+...+
T Consensus 201 ~V~T~e~a~~l~~---aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KAL 275 (404)
T PRK06843 201 NIVTKEAALDLIS---VGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKN-TNICIIADGGIRFSGDVVKAI 275 (404)
T ss_pred ecCCHHHHHHHHH---cCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHH
Confidence 4555555555444 68999985 666663 22211 11233334444333 36999999999 788999999
Q ss_pred HcCCCEEEEcccccC
Q 033625 79 SAGANCIVAGSSVFG 93 (115)
Q Consensus 79 ~~Gad~iv~Gsaif~ 93 (115)
.+|||.+.+||++.+
T Consensus 276 alGA~aVmvGs~~ag 290 (404)
T PRK06843 276 AAGADSVMIGNLFAG 290 (404)
T ss_pred HcCCCEEEEcceeee
Confidence 999999999999976
No 147
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.33 E-value=0.0043 Score=47.95 Aligned_cols=94 Identities=24% Similarity=0.406 Sum_probs=63.9
Q ss_pred EEEecCCCCHHhHHHhHh---CCC-CCCEEEEE-------eeeC--------------CCCCcccchhHHHHHHHHHhhC
Q 033625 4 GVALKPGTSVEEVYPLVE---GAN-PVEMVLVM-------TVEP--------------GFGGQKFMPEMMDKVRSLRNRY 58 (115)
Q Consensus 4 Glal~p~t~~~~~~~~~~---~~~-~vD~vlvm-------~v~p--------------G~~gq~~~~~~~~ki~~l~~~~ 58 (115)
.+=|.|.+..+.+.++.+ ++. ++|.|.+. .+++ |++|....+..++.++++++..
T Consensus 161 ~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~ 240 (294)
T cd04741 161 GVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLL 240 (294)
T ss_pred EEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhc
Confidence 344667766554444432 212 78888752 1222 2344445677788888888776
Q ss_pred C-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH
Q 033625 59 P-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP 97 (115)
Q Consensus 59 ~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~ 97 (115)
+ ++||..-|||. .+.+.+++.+|||.+=++|+++. .+..
T Consensus 241 ~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~ 282 (294)
T cd04741 241 PSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKV 282 (294)
T ss_pred CCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchH
Confidence 5 69999999995 77888888899999999999874 4543
No 148
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.30 E-value=0.0029 Score=48.85 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH
Q 033625 37 GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP 97 (115)
Q Consensus 37 G~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~ 97 (115)
|++|....+..++.+.++++.. +++||...|||+ .+.+.+++.+|||.+-++|+++. .++.
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~ 291 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTI 291 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcH
Confidence 5677777788899999998876 379999999995 67788888899999999999775 4443
No 149
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.27 E-value=0.0013 Score=52.03 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=61.4
Q ss_pred ceEEEecCCCC------HH---hHHHhHhCCCCCCEEEEEeeeCCCCCccc--chhHHHHHHHHHhhC-CCCcEEEEcCC
Q 033625 2 RPGVALKPGTS------VE---EVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNRY-PSLDIEVDGGL 69 (115)
Q Consensus 2 k~Glal~p~t~------~~---~~~~~~~~~~~vD~vlvm~v~pG~~gq~~--~~~~~~ki~~l~~~~-~~~~i~~dGGI 69 (115)
.+|+=+++... .+ .+...+++ .++|||-|-.- ++..... .......++++++.. .++|+.+.|||
T Consensus 217 ~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~-~GvD~I~Vs~g--~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi 293 (353)
T cd04735 217 ILGYRFSPEEPEEPGIRMEDTLALVDKLAD-KGLDYLHISLW--DFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSI 293 (353)
T ss_pred eEEEEECcccccCCCCCHHHHHHHHHHHHH-cCCCEEEeccC--ccccccccCCcchHHHHHHHHHHhCCCCCEEEECCC
Confidence 35666676421 22 23344433 46899976432 1222111 111223344454443 36899999999
Q ss_pred -ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 70 -GPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 70 -~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
+++.+.++++.|+|.+.+|+++...+|+.+.++
T Consensus 294 ~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 294 NTPDDALEALETGADLVAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred CCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHH
Confidence 799999999989999999999998888755543
No 150
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.27 E-value=0.0012 Score=50.37 Aligned_cols=76 Identities=16% Similarity=0.377 Sum_probs=53.3
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
.+.+.|+|=..+.. +|. ..+++-.++....| +..+++.+||+ ++.+..+..+|+|.+.+|+++.+++||.+.+
T Consensus 177 ~~a~iiGINnRdL~----tf~-vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~ 251 (254)
T PF00218_consen 177 AGADIIGINNRDLK----TFE-VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEAL 251 (254)
T ss_dssp TT-SEEEEESBCTT----TCC-BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHH
T ss_pred cCCCEEEEeCcccc----Ccc-cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHH
Confidence 57888876544432 121 12233444544443 57788999998 7999999999999999999999999999998
Q ss_pred HHH
Q 033625 102 SLM 104 (115)
Q Consensus 102 ~~l 104 (115)
++|
T Consensus 252 ~~L 254 (254)
T PF00218_consen 252 REL 254 (254)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 151
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.25 E-value=0.0045 Score=47.80 Aligned_cols=77 Identities=17% Similarity=0.333 Sum_probs=52.7
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gs 89 (115)
..+...... + .++|+|.+-. +.| ......+.+++.+.++++..+ ++|+.++||| +...+...+.+|||.+-+|+
T Consensus 182 s~~~a~~a~-~-~G~d~I~v~~-~gG-~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 182 TPEDALRAV-D-AGADGIVVSN-HGG-RQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CHHHHHHHH-H-CCCCEEEEcC-CCC-CCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 344444444 1 5899987542 222 111234566777888876543 6999999999 57888888889999999998
Q ss_pred ccc
Q 033625 90 SVF 92 (115)
Q Consensus 90 aif 92 (115)
.++
T Consensus 258 ~~l 260 (299)
T cd02809 258 PFL 260 (299)
T ss_pred HHH
Confidence 854
No 152
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.25 E-value=0.0036 Score=46.82 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G 88 (115)
..|++..+.|.+ .++|.+-+.=.+.- .|..-. ++-++++.+.. ..|++++|||+. +.+..+..+||+-+|+|
T Consensus 35 ~dp~~~a~~~~~--~g~~~l~i~DLd~~-~~~~~n---~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viig 107 (233)
T cd04723 35 SDPLDVARAYKE--LGFRGLYIADLDAI-MGRGDN---DEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVG 107 (233)
T ss_pred CCHHHHHHHHHH--CCCCEEEEEeCccc-cCCCcc---HHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEc
Confidence 467777777762 37899988766643 244333 34456665543 589999999987 99999999999999999
Q ss_pred ccccCC
Q 033625 89 SSVFGA 94 (115)
Q Consensus 89 saif~~ 94 (115)
|..|+.
T Consensus 108 t~~~~~ 113 (233)
T cd04723 108 TETLPS 113 (233)
T ss_pred ceeccc
Confidence 998876
No 153
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.24 E-value=0.0036 Score=50.41 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=69.0
Q ss_pred ecCC-CCHHhHHHhHhCCCCCCEEEE-------Eee-----------e-----CCCCCcccchhHHHHHHHHHhhC--CC
Q 033625 7 LKPG-TSVEEVYPLVEGANPVEMVLV-------MTV-----------E-----PGFGGQKFMPEMMDKVRSLRNRY--PS 60 (115)
Q Consensus 7 l~p~-t~~~~~~~~~~~~~~vD~vlv-------m~v-----------~-----pG~~gq~~~~~~~~ki~~l~~~~--~~ 60 (115)
|.|+ +.+..+...+++ .++|.|.+ |.+ + -|++|....+..++.+.++++.. ++
T Consensus 175 l~p~~~~~~~~a~~~~~-~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ 253 (420)
T PRK08318 175 LTPNITDIREPARAAKR-GGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRG 253 (420)
T ss_pred cCCCcccHHHHHHHHHH-CCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCC
Confidence 4444 344455554544 57898874 221 1 15677777788899999998864 37
Q ss_pred CcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHH
Q 033625 61 LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVE 109 (115)
Q Consensus 61 ~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~-~~~~~~l~~~~~ 109 (115)
+||..-|||. .+.+-+++.+|||.+=++|+++. .++. ..-.+.|.+.++
T Consensus 254 ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~ 305 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMD 305 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHH
Confidence 9999999996 67777778899999999999775 3333 333444444443
No 154
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.23 E-value=0.0021 Score=48.27 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSV 91 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsai 91 (115)
.+.++.+. . ..+..++++.+...-+.+-+..+. ++++++. .++|+.+-||++. +.+..+.+.|++.+++|+++
T Consensus 151 ~~~~~~~~-~-~g~~~ii~tdi~~dGt~~G~~~~l---i~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~ 224 (234)
T PRK13587 151 FSFVRQLS-D-IPLGGIIYTDIAKDGKMSGPNFEL---TGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA 224 (234)
T ss_pred HHHHHHHH-H-cCCCEEEEecccCcCCCCccCHHH---HHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 55556655 1 367899999998765555555444 4455444 4799999999975 79999999999999999999
Q ss_pred cC
Q 033625 92 FG 93 (115)
Q Consensus 92 f~ 93 (115)
++
T Consensus 225 ~~ 226 (234)
T PRK13587 225 HQ 226 (234)
T ss_pred Hh
Confidence 86
No 155
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.23 E-value=0.0043 Score=48.55 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=54.7
Q ss_pred HHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccccc
Q 033625 16 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSSVF 92 (115)
Q Consensus 16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsaif 92 (115)
+...+++ .++|++.+ ++....|.+. +..++.++++++.. ++|+.+-||| +.+.+..+.+ .|+|.+.+|++++
T Consensus 154 ~a~~le~-~G~d~i~v---h~rt~~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 154 IAQLAED-CGIQALTI---HGRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHHHHH-hCCCEEEE---ecCccccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 3333433 57899964 5443333321 23456677777653 7999999999 8999999886 7999999999988
Q ss_pred CCCCHH
Q 033625 93 GAPEPA 98 (115)
Q Consensus 93 ~~~d~~ 98 (115)
..+.+-
T Consensus 229 ~nP~if 234 (321)
T PRK10415 229 GRPWIF 234 (321)
T ss_pred cCChHH
Confidence 766543
No 156
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.22 E-value=0.00048 Score=51.95 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625 49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106 (115)
Q Consensus 49 ~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~ 106 (115)
+.+.++++...+.++.+=|||+ .+...++.++|||.+|+|.++.+..+.++..+++++
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~a 229 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIKA 229 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHHH
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHhh
Confidence 3455555555789999999996 688889999999999999999876665666555543
No 157
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.22 E-value=0.0028 Score=53.07 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh------------hhHHH
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAE 76 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~------------~ni~~ 76 (115)
.+.|++..+.|-+ .++|.+.++-+..-..+..-....++-|+++.+.. .+|+.+=|||+. +.++.
T Consensus 266 ~gdPve~a~~y~~--~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 266 LGKPVELAGQYYK--DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHH
Confidence 5678888888772 58999998877653334444445567778777653 699999999998 88999
Q ss_pred HHHcCCCEEEEcccccCC
Q 033625 77 AASAGANCIVAGSSVFGA 94 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~ 94 (115)
+..+|||-+++||+-++.
T Consensus 343 ~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 343 YFRSGADKISIGSDAVYA 360 (538)
T ss_pred HHHcCCCEEEEChHHHhC
Confidence 999999999999987764
No 158
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.19 E-value=0.0038 Score=45.99 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=56.2
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcC-CCEEEEcc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAG-ANCIVAGS 89 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~G-ad~iv~Gs 89 (115)
+.+..+.+. + .++|.+++..+...-..+.. -++.++++++.. ++|+.+-|||+. +.+..+.+.| +|.+++|+
T Consensus 148 ~~e~~~~~~-~-~g~~~ii~~~~~~~g~~~G~---d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 148 AEDLAKRFE-D-AGVKAIIYTDISRDGTLSGP---NVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred HHHHHHHHH-h-cCCCEEEEeeecCcCCcCCC---CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence 355555555 1 37899999888774333333 245566666654 599999999975 8999999988 99999999
Q ss_pred cccCC
Q 033625 90 SVFGA 94 (115)
Q Consensus 90 aif~~ 94 (115)
+++..
T Consensus 222 a~~~~ 226 (233)
T PRK00748 222 ALYEG 226 (233)
T ss_pred HHHcC
Confidence 98754
No 159
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.18 E-value=0.0011 Score=49.93 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=40.1
Q ss_pred CcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625 61 LDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108 (115)
Q Consensus 61 ~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~ 108 (115)
+|++ +.||+ |+.....+.+.|.|++-+||.||++.||...++.+-+..
T Consensus 208 lPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAv 258 (296)
T KOG1606|consen 208 LPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAV 258 (296)
T ss_pred CceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHH
Confidence 5544 67776 688899999999999999999999999988888776544
No 160
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.17 E-value=0.0011 Score=49.39 Aligned_cols=83 Identities=18% Similarity=0.370 Sum_probs=59.0
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVA 87 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~ 87 (115)
...|++..+.|. . .++|.+-+.=.+.-..|.. ..++.|+++.+.. ..|++++|||+. +.+..+.+.||+-+|+
T Consensus 28 ~~dP~~~a~~~~-~-~g~~~l~ivDLdaa~~g~~---~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 28 SGDPVEVAKAFN-E-QGADELHIVDLDAAKEGRG---SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCCHHHHHHHHH-H-TT-SEEEEEEHHHHCCTHH---HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEE
T ss_pred CcCHHHHHHHHH-H-cCCCEEEEEEccCcccCch---hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEe
Confidence 456778777774 2 6899998866554333433 3445677777664 499999999974 5588999999999999
Q ss_pred cccccCCCCH
Q 033625 88 GSSVFGAPEP 97 (115)
Q Consensus 88 Gsaif~~~d~ 97 (115)
||+.|..++.
T Consensus 102 gt~~~~~~~~ 111 (229)
T PF00977_consen 102 GTEALEDPEL 111 (229)
T ss_dssp SHHHHHCCHH
T ss_pred ChHHhhchhH
Confidence 9999976654
No 161
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.13 E-value=0.0013 Score=49.34 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=40.7
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC
Q 033625 39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 39 ~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.|.+..++. ++++++...+.|+.+-|||+ .+.++.+.++|||.+|+||.+++.
T Consensus 161 ~g~~v~~e~---i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 161 APEPVPPEL---VAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CCCCcCHHH---HHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 344444555 55555554469999999996 688889999999999999999864
No 162
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.10 E-value=0.0049 Score=50.00 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=61.9
Q ss_pred ceEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
.+|.|+++... .+.++.+++ .++|+|.+-+.++- .....+.++++++.+|+.++.+-+-.|.+....+.++
T Consensus 143 ~v~aavg~~~~~~~~v~~lv~--aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a 214 (404)
T PRK06843 143 RVGAAVSIDIDTIERVEELVK--AHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV 214 (404)
T ss_pred EEEEEEeCCHHHHHHHHHHHh--cCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc
Confidence 47888876432 467777773 48999998776631 2345667889998888999988889999999999999
Q ss_pred CCCEEEEc
Q 033625 81 GANCIVAG 88 (115)
Q Consensus 81 Gad~iv~G 88 (115)
|||++.+|
T Consensus 215 GaD~I~vG 222 (404)
T PRK06843 215 GADCLKVG 222 (404)
T ss_pred CCCEEEEC
Confidence 99999887
No 163
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=97.10 E-value=0.0035 Score=46.35 Aligned_cols=41 Identities=29% Similarity=0.478 Sum_probs=37.7
Q ss_pred EEEEcCCChh----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625 63 IEVDGGLGPS----------TIAEAASAGANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 63 i~~dGGI~~~----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
..+.+||.++ +.....+.|++++++|+.||+++||.+.+++
T Consensus 165 ~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 165 LILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred eEEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 4888999999 9999999999999999999999999888765
No 164
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.08 E-value=0.0025 Score=47.67 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gs 89 (115)
++++.++.+. ..+..++++.+.-.-+.+-+. .+ .+..++.|+.+.||++. +.+..+.+.|++.+++|+
T Consensus 144 ~~~~~~~~~~---~~~~~ii~t~i~~dGt~~G~d-----~l---~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~ 212 (228)
T PRK04128 144 KVEDAYEMLK---NYVNRFIYTSIERDGTLTGIE-----EI---ERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGK 212 (228)
T ss_pred CHHHHHHHHH---HHhCEEEEEeccchhcccCHH-----HH---HHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEh
Confidence 3445555544 346788888887643433332 22 22235799999999975 899999999999999999
Q ss_pred cccCCC
Q 033625 90 SVFGAP 95 (115)
Q Consensus 90 aif~~~ 95 (115)
+++...
T Consensus 213 al~~g~ 218 (228)
T PRK04128 213 ALYEGR 218 (228)
T ss_pred hhhcCC
Confidence 998654
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.06 E-value=0.0052 Score=51.06 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=57.0
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--------cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--------FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA 78 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--------~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~ 78 (115)
|..|..+....+- .++|.|.+ +++||+.... -....+..+.++.+.. ++|+.+||||. ...+...+
T Consensus 296 ~v~t~e~a~~a~~---aGaD~i~v-g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAl 370 (505)
T PLN02274 296 NVVTMYQAQNLIQ---AGVDGLRV-GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKAL 370 (505)
T ss_pred cCCCHHHHHHHHH---cCcCEEEE-CCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHH
Confidence 5666666665555 78999866 5566632111 0123555566666553 69999999996 66788888
Q ss_pred HcCCCEEEEcccccCC
Q 033625 79 SAGANCIVAGSSVFGA 94 (115)
Q Consensus 79 ~~Gad~iv~Gsaif~~ 94 (115)
.+|||.+.+||++...
T Consensus 371 a~GA~~V~vGs~~~~t 386 (505)
T PLN02274 371 TLGASTVMMGSFLAGT 386 (505)
T ss_pred HcCCCEEEEchhhccc
Confidence 9999999999998753
No 166
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.04 E-value=0.0062 Score=46.03 Aligned_cols=83 Identities=10% Similarity=0.028 Sum_probs=58.1
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHH---HcCCCEEEE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAA---SAGANCIVA 87 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~---~~Gad~iv~ 87 (115)
+.+.++.+. . .++..+++..+.-.-+.+-+.-+. ++++++. .+.|+.+.||++. +.+..+. +.|++.+++
T Consensus 151 ~~~~~~~~~-~-~g~~~ii~tdI~~dGt~~G~d~~l---~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 151 LEVLERLLD-S-GGCSRVVVTDSKKDGLSGGPNELL---LEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred HHHHHHHHH-h-CCCCEEEEEecCCcccCCCcCHHH---HHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence 335555554 1 368899999998765555555444 4555555 4799999999986 6887764 459999999
Q ss_pred cccccCCC-CHHHH
Q 033625 88 GSSVFGAP-EPAHV 100 (115)
Q Consensus 88 Gsaif~~~-d~~~~ 100 (115)
|++++... +.+++
T Consensus 225 g~Al~~g~i~~~~~ 238 (243)
T TIGR01919 225 GKLLYARFFTLEAA 238 (243)
T ss_pred hHHHHcCCCCHHHH
Confidence 99998654 44443
No 167
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.02 E-value=0.0099 Score=44.85 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=53.6
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcC-CCEEEEcccc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAG-ANCIVAGSSV 91 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~G-ad~iv~Gsai 91 (115)
+..+.+. + .++|.+++..+...-..+.+. ++.++++++. .++|+.+.|||+. +.+.++...| +|.+++|+++
T Consensus 159 ~~~~~l~-~-~G~~~iivt~i~~~g~~~g~~---~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 159 EWAKEVE-K-LGAGEILLTSMDKDGTKSGYD---LELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHH-H-cCCCEEEEeCcCcccCCCCCC---HHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 3444443 2 479999987766643333333 3445666655 3799999999975 7898988888 9999999998
Q ss_pred cCCC
Q 033625 92 FGAP 95 (115)
Q Consensus 92 f~~~ 95 (115)
+...
T Consensus 233 ~~~~ 236 (254)
T TIGR00735 233 HYRE 236 (254)
T ss_pred hCCC
Confidence 7543
No 168
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=97.01 E-value=0.0018 Score=47.30 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=44.0
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCCEEEEcccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif~~ 94 (115)
..+|++|+- -..|-+|+.|.-..+..+.+ .....|+...||||++|+.++++ ..+.++=+.|.+=.+
T Consensus 115 ~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~---~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~ 182 (197)
T PF00697_consen 115 ESVDYFLLD-SGSGGTGKTFDWSLLKKIVE---SYSPKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETS 182 (197)
T ss_dssp TT-SEEEEE-SSSTSSSS---GGGGCCCHH---T-GTSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred ccccEEeEc-cCCCcCCcccCHHHhhhhhh---hcccCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccC
Confidence 455999987 44566788887766555443 22368999999999999999887 899999999887433
No 169
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.00 E-value=0.0062 Score=47.46 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=54.2
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG-~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G 88 (115)
+.++...... + .++|+|.+-+...| +.|. ...+..+.++++.. ++|+.+.|||.. +.+..+...|||.+.+|
T Consensus 117 ~s~~~a~~a~-~-~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 117 ASVALAKRME-K-AGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCHHHHHHHH-H-cCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 3444444443 1 58999987666554 3232 23567778887664 699999999964 55888888999999999
Q ss_pred ccccC
Q 033625 89 SSVFG 93 (115)
Q Consensus 89 saif~ 93 (115)
+.+..
T Consensus 191 t~f~~ 195 (307)
T TIGR03151 191 TRFLC 195 (307)
T ss_pred hHHhc
Confidence 98553
No 170
>PLN02826 dihydroorotate dehydrogenase
Probab=96.96 E-value=0.014 Score=47.33 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=63.4
Q ss_pred EEecCCCCHHh---HHHhHhCCCCCCEEEEEee----------------eCCCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625 5 VALKPGTSVEE---VYPLVEGANPVEMVLVMTV----------------EPGFGGQKFMPEMMDKVRSLRNRYP-SLDIE 64 (115)
Q Consensus 5 lal~p~t~~~~---~~~~~~~~~~vD~vlvm~v----------------~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~ 64 (115)
+=|.|+...+. +...+.+ .++|.|.+-.. .-|++|.+..+.+++-+.++++... ++||.
T Consensus 267 vKlaPdl~~~di~~ia~~a~~-~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipII 345 (409)
T PLN02826 267 VKIAPDLSKEDLEDIAAVALA-LGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLV 345 (409)
T ss_pred EecCCCCCHHHHHHHHHHHHH-cCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEE
Confidence 33556665433 3333322 57998877542 1246777777888999999987653 69999
Q ss_pred EEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625 65 VDGGLG-PSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 65 ~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.+|||. .+.+-+.+.+||+.+=++|+++.
T Consensus 346 gvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 346 GCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred EECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 999996 56888889999999999999654
No 171
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=96.95 E-value=0.0017 Score=49.89 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=49.0
Q ss_pred CCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc-cCCCCH
Q 033625 38 FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV-FGAPEP 97 (115)
Q Consensus 38 ~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai-f~~~d~ 97 (115)
++|....+.++.-++++++..+ +++|...|||. .+.+.+++.+|||.+=++|++ |+.++.
T Consensus 221 lSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~ 283 (295)
T PF01180_consen 221 LSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGV 283 (295)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTH
T ss_pred cCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHH
Confidence 4666777889999999998865 79999999995 678889999999999999998 665543
No 172
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.89 E-value=0.0021 Score=47.65 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCCHHhHHHhHhCC--CCCCEEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625 9 PGTSVEEVYPLVEGA--NPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANC 84 (115)
Q Consensus 9 p~t~~~~~~~~~~~~--~~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~ 84 (115)
|+.+.|....|...+ .+++++-+ .. .|+ +.... .+.++++++.. +.|+.+-||| +.+.++++.++|||.
T Consensus 129 p~~~~e~~~~~a~aa~~~G~~~i~L--e~~sGa-~~~v~---~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 129 PYNKPEIAAAYCLAAKYFGMKWVYL--EAGSGA-SYPVN---PETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEE--EcCCCC-CCCCC---HHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 445666666665432 25777665 22 333 22233 34455565554 7999999999 789999999999999
Q ss_pred EEEc
Q 033625 85 IVAG 88 (115)
Q Consensus 85 iv~G 88 (115)
+|+|
T Consensus 202 VVVG 205 (205)
T TIGR01769 202 IVTG 205 (205)
T ss_pred EEeC
Confidence 9987
No 173
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=96.88 E-value=0.0037 Score=49.33 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=67.4
Q ss_pred EEEecCCCC---HHhHHHhHhCCCCCCEEEEEee---------------eCCCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625 4 GVALKPGTS---VEEVYPLVEGANPVEMVLVMTV---------------EPGFGGQKFMPEMMDKVRSLRNRYP-SLDIE 64 (115)
Q Consensus 4 Glal~p~t~---~~~~~~~~~~~~~vD~vlvm~v---------------~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~ 64 (115)
.+=|.|+.. +..+...+.+ .++|.|.+... .-|++|....+..++.+.++++..+ ++||.
T Consensus 214 ~vKLsP~~~~~~i~~ia~~~~~-~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipii 292 (335)
T TIGR01036 214 LVKIAPDLTESDLEDIADSLVE-LGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPII 292 (335)
T ss_pred EEEeCCCCCHHHHHHHHHHHHH-hCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 344667765 3334443323 57898876542 2246677777888888999987654 69999
Q ss_pred EEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCHH
Q 033625 65 VDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEPA 98 (115)
Q Consensus 65 ~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~~ 98 (115)
..|||. .+.+.++..+|||.+-+||+++. .++..
T Consensus 293 g~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~ 328 (335)
T TIGR01036 293 GVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLV 328 (335)
T ss_pred EECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHH
Confidence 999996 56688999999999999999875 35543
No 174
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.88 E-value=0.006 Score=47.73 Aligned_cols=78 Identities=13% Similarity=0.269 Sum_probs=56.1
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchh--HHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHH-HcCCCEEEEccc
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE--MMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAA-SAGANCIVAGSS 90 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~--~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~-~~Gad~iv~Gsa 90 (115)
.+...+++ .++|++. |+++...|.+... -++.++++++.. ++|+..-||| +.+.+..+. ..|+|.+-+|++
T Consensus 152 ~~a~~l~~-~Gvd~i~---Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg 226 (312)
T PRK10550 152 EIADAVQQ-AGATELV---VHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRG 226 (312)
T ss_pred HHHHHHHh-cCCCEEE---ECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHH
Confidence 44455544 5799995 6776655544321 346677777654 7999999999 888888865 689999999988
Q ss_pred ccCCCCH
Q 033625 91 VFGAPEP 97 (115)
Q Consensus 91 if~~~d~ 97 (115)
.+..+.+
T Consensus 227 ~l~nP~l 233 (312)
T PRK10550 227 ALNIPNL 233 (312)
T ss_pred hHhCcHH
Confidence 7766644
No 175
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.87 E-value=0.0055 Score=47.10 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=47.3
Q ss_pred HHHHHHhhCCCCcEEEEcCCChh------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 50 KVRSLRNRYPSLDIEVDGGLGPS------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 50 ki~~l~~~~~~~~i~~dGGI~~~------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
.++++-+.. ..|+.+.||=+.+ .+....++||.++++|+.||+.+||.+.++.|++++.+
T Consensus 183 ~f~~vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 183 GFERITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHHHHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 344444433 5899999998842 23446789999999999999999999999999988763
No 176
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0091 Score=45.68 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=58.0
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV 91 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai 91 (115)
+.++..+. .+.+.|+|= |-....-.......+++ ....| +..++.-.||+ ++.+..+...|||.|.+|+++
T Consensus 167 eEl~rAl~--~ga~iIGIN--nRdL~tf~vdl~~t~~l---a~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~sl 239 (254)
T COG0134 167 EELERALK--LGAKIIGIN--NRDLTTLEVDLETTEKL---APLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEAL 239 (254)
T ss_pred HHHHHHHh--CCCCEEEEe--CCCcchheecHHHHHHH---HhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHH
Confidence 34444441 355666432 23333333334444443 44444 47788999998 999999999999999999999
Q ss_pred cCCCCHHHHHHHHH
Q 033625 92 FGAPEPAHVISLMR 105 (115)
Q Consensus 92 f~~~d~~~~~~~l~ 105 (115)
.+++|+.++++++.
T Consensus 240 M~~~~~~~a~~~l~ 253 (254)
T COG0134 240 MRADDPEEALRELL 253 (254)
T ss_pred hcCCCHHHHHHHhh
Confidence 99999998887763
No 177
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.0031 Score=48.45 Aligned_cols=50 Identities=22% Similarity=0.469 Sum_probs=43.4
Q ss_pred CcEEEEcCCChhh-------HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 61 ~~i~~dGGI~~~n-------i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
+|+.+.||=+.++ ...+.++||.++++|+-||+.++|...++.+..+..+
T Consensus 203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe 259 (265)
T COG1830 203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE 259 (265)
T ss_pred CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence 9999999988833 4456789999999999999999999999999888754
No 178
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.81 E-value=0.0095 Score=44.92 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=55.2
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.+...+++ .++|+|.| +.++.|... ..++.|+++++..+++||..-|||+ .+.+.++.++|||.+-+|+++++
T Consensus 152 ~~a~~l~~-aGad~i~V---d~~~~g~~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 152 IDALNLVD-DGFDGIHV---DAMYPGKPY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHHHHHH-cCCCEEEE---eeCCCCCch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 34444444 68999965 555555422 3567788888865469999999996 58899998999999999998875
Q ss_pred C
Q 033625 94 A 94 (115)
Q Consensus 94 ~ 94 (115)
.
T Consensus 226 ~ 226 (231)
T TIGR00736 226 G 226 (231)
T ss_pred C
Confidence 3
No 179
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.0096 Score=44.42 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=35.9
Q ss_pred HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625 51 VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 51 i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
++.+..-.+++++...|||+++|++++..+|+..+=+||.++..
T Consensus 144 ~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~ 187 (211)
T COG0800 144 LKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPK 187 (211)
T ss_pred HHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccCh
Confidence 44444446789999999999999999999997777668989864
No 180
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.80 E-value=0.0073 Score=45.36 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=53.9
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS 90 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa 90 (115)
+.+.++.+- + .++.-+++..+...-+.+-+..+. ++++++. ++. +.+.||++. +.+..+.+.|+|.+++|++
T Consensus 148 ~~e~~~~l~-~-~g~~~ii~tdI~~dGt~~G~d~el---~~~~~~~-~~~-viasGGv~s~~Dl~~l~~~G~~gvivg~A 220 (232)
T PRK13586 148 VIDGIKKVN-E-LELLGIIFTYISNEGTTKGIDYNV---KDYARLI-RGL-KEYAGGVSSDADLEYLKNVGFDYIIVGMA 220 (232)
T ss_pred HHHHHHHHH-h-cCCCEEEEecccccccCcCcCHHH---HHHHHhC-CCC-EEEECCCCCHHHHHHHHHCCCCEEEEehh
Confidence 344555543 2 367888988888755555555554 4444444 344 888999986 8999999999999999999
Q ss_pred ccC
Q 033625 91 VFG 93 (115)
Q Consensus 91 if~ 93 (115)
++.
T Consensus 221 ly~ 223 (232)
T PRK13586 221 FYL 223 (232)
T ss_pred hhc
Confidence 984
No 181
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.77 E-value=0.01 Score=48.97 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=59.3
Q ss_pred eEEEecCCCCH-HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 3 PGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 3 ~Glal~p~t~~-~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
+|-+....... +.++.+++ .++|.|.+-+.+ |.. ....+.++++++.++++|+.++-+.|.+....|.++|
T Consensus 216 Vgaav~~~~~~~~ra~~Lv~--aGVd~i~~D~a~-g~~-----~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G 287 (475)
T TIGR01303 216 IGAAVGINGDVGGKAKALLD--AGVDVLVIDTAH-GHQ-----VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAG 287 (475)
T ss_pred ehheeeeCccHHHHHHHHHH--hCCCEEEEeCCC-CCc-----HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhC
Confidence 34445544333 56666662 489999887777 432 4566778899988889999997799999999999999
Q ss_pred CCEEEEc
Q 033625 82 ANCIVAG 88 (115)
Q Consensus 82 ad~iv~G 88 (115)
||++-+|
T Consensus 288 ~d~i~vg 294 (475)
T TIGR01303 288 ANIIKVG 294 (475)
T ss_pred CCEEEEC
Confidence 9999766
No 182
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.74 E-value=0.0037 Score=48.71 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=55.4
Q ss_pred CCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCC-HHHHHHHHHHHHHHH
Q 033625 39 GGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APE-PAHVISLMRKSVEDA 111 (115)
Q Consensus 39 ~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d-~~~~~~~l~~~~~~~ 111 (115)
+|....+..+..+.++++.. +++||...|||. .+.+-+++.+|||.+=++|+++. .++ +....++|.+.+++.
T Consensus 219 SG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~ 295 (310)
T PRK02506 219 GGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEK 295 (310)
T ss_pred CchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 56667788888898888765 479999999994 77888889999999999999775 343 345555566555543
No 183
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.74 E-value=0.013 Score=46.18 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCC--------------C---cccchhHHHHHHHHHhhCCCCcEEEEcCC-Chh
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG--------------G---QKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPS 72 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~--------------g---q~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ 72 (115)
+..+..+.+. + .++|+|.+-+. .|.. + ..+...+.+.+.++++...++|+.++||| +.+
T Consensus 191 ~~~~~a~~L~-~-aGvd~I~Vsg~-gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~ 267 (333)
T TIGR02151 191 ISKEVAKLLA-D-AGVSAIDVAGA-GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGL 267 (333)
T ss_pred CCHHHHHHHH-H-cCCCEEEECCC-CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHH
Confidence 4555555554 2 58999987432 1210 0 01122234455566553347999999999 899
Q ss_pred hHHHHHHcCCCEEEEcccccC
Q 033625 73 TIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 73 ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.+...+..|||.+-+|++++.
T Consensus 268 di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 268 DVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred HHHHHHHhCCCeehhhHHHHH
Confidence 999999999999999988763
No 184
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.74 E-value=0.014 Score=45.33 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=51.6
Q ss_pred CCCCEEEEEeee--CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH-HcCCCEEEEcccccCCCCHHH
Q 033625 24 NPVEMVLVMTVE--PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGSSVFGAPEPAH 99 (115)
Q Consensus 24 ~~vD~vlvm~v~--pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~-~~Gad~iv~Gsaif~~~d~~~ 99 (115)
.++|++.+-+.. .++.| +..++.++++++.. ++|+.+-|||+ .+.+..+. ..|+|.+.+|++++..+..-+
T Consensus 159 ~G~d~i~vh~r~~~~~~~~----~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~ 233 (319)
T TIGR00737 159 AGAQAVTLHGRTRAQGYSG----EANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFR 233 (319)
T ss_pred hCCCEEEEEcccccccCCC----chhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHH
Confidence 478999764322 23333 23456677777764 59999999995 77888887 689999999999887776543
Q ss_pred H
Q 033625 100 V 100 (115)
Q Consensus 100 ~ 100 (115)
.
T Consensus 234 ~ 234 (319)
T TIGR00737 234 Q 234 (319)
T ss_pred H
Confidence 3
No 185
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.73 E-value=0.011 Score=46.33 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=51.4
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCC--Ccc---cchhHHHHHHHHHhhC--CCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG--GQK---FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGA 82 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq~---~~~~~~~ki~~l~~~~--~~~~i~~dGGI~-~~ni~~l~~~Ga 82 (115)
+..+..+.+++ .++|+|.+ .+-||.. ++. .....+..+.++++.. .++|+.++|||+ ...+...+++||
T Consensus 144 ~t~~~A~~l~~--aGaD~I~v-g~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA 220 (325)
T cd00381 144 VTAEAARDLID--AGADGVKV-GIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGA 220 (325)
T ss_pred CCHHHHHHHHh--cCCCEEEE-CCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCC
Confidence 44455555551 58999976 3455532 111 1112333344443322 269999999997 688999889999
Q ss_pred CEEEEcccccCC
Q 033625 83 NCIVAGSSVFGA 94 (115)
Q Consensus 83 d~iv~Gsaif~~ 94 (115)
|.+.+||.+...
T Consensus 221 ~~VmiGt~fa~t 232 (325)
T cd00381 221 DAVMLGSLLAGT 232 (325)
T ss_pred CEEEecchhccc
Confidence 999999987653
No 186
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.73 E-value=0.013 Score=46.08 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=52.4
Q ss_pred CCCCEEEEEeee---CCCCCc---ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCC
Q 033625 24 NPVEMVLVMTVE---PGFGGQ---KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPE 96 (115)
Q Consensus 24 ~~vD~vlvm~v~---pG~~gq---~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d 96 (115)
.++|++.+-+.. .|+.+. ...+..++.+.++++..+++|+.+-||| +.+.+.++.+ |+|.+.+|++++..+.
T Consensus 163 aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 163 AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred hCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 479999753221 133332 1223446677788776668999999999 7888988876 7999999999887665
Q ss_pred HH
Q 033625 97 PA 98 (115)
Q Consensus 97 ~~ 98 (115)
.-
T Consensus 242 ~~ 243 (333)
T PRK11815 242 LL 243 (333)
T ss_pred HH
Confidence 43
No 187
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.72 E-value=0.02 Score=42.90 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHH---HcCCCEEEEc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAA---SAGANCIVAG 88 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~---~~Gad~iv~G 88 (115)
++.++.+. + .+++.+++..+...-..+.+ .++.++++++. .++|+.+-|||+. +.+..+. +.|+|.+++|
T Consensus 149 ~~~~~~l~-~-~G~~~iiv~~~~~~g~~~G~---d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 149 WEVLERLD-S-AGCSRYVVTDVTKDGTLTGP---NLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred HHHHHHHH-h-cCCCEEEEEeecCCCCccCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEe
Confidence 44455544 2 58999999998874333333 35566777665 3799999999964 6777764 3599999999
Q ss_pred ccccCCC-CHHHHH
Q 033625 89 SSVFGAP-EPAHVI 101 (115)
Q Consensus 89 saif~~~-d~~~~~ 101 (115)
++++... ++.++.
T Consensus 223 ra~~~g~~~~~~~~ 236 (241)
T PRK14024 223 KALYAGAFTLPEAL 236 (241)
T ss_pred HHHHcCCCCHHHHH
Confidence 9987554 444443
No 188
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=96.69 E-value=0.0012 Score=48.85 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=38.4
Q ss_pred cEEEEcCCChhhHHHHHH-cCCCEEEEcccccCCCCHHHHHHHH
Q 033625 62 DIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAPEPAHVISLM 104 (115)
Q Consensus 62 ~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif~~~d~~~~~~~l 104 (115)
.....||++....+.+.. .|+|++|+|++|.+++||.++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 183 QGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp TCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred cccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 578899999998888866 8999999999999999999998875
No 189
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=96.69 E-value=0.018 Score=45.10 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=51.2
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-c-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEE
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-M-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVA 87 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~ 87 (115)
+.++.....++ .++|.|.+-..+.| |..- . ..++..+.++++.. ++|+.+.||| +.+.+......|||.+.+
T Consensus 144 ~s~~~A~~a~~--~G~D~iv~qG~eAG--GH~g~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 144 TSVREARKAAK--AGADAIVAQGPEAG--GHRGFEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp SSHHHHHHHHH--TT-SEEEEE-TTSS--EE---SSG-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred CCHHHHHHhhh--cCCCEEEEeccccC--CCCCccccceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 44554455442 58999987655544 2222 2 24777788888875 5999999999 566789999999999999
Q ss_pred ccccc-CCCC
Q 033625 88 GSSVF-GAPE 96 (115)
Q Consensus 88 Gsaif-~~~d 96 (115)
|+... ..+.
T Consensus 219 GTrFl~t~Es 228 (330)
T PF03060_consen 219 GTRFLATEES 228 (330)
T ss_dssp SHHHHTSTTS
T ss_pred CCeEEecccc
Confidence 98844 4443
No 190
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.051 Score=41.21 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=67.0
Q ss_pred EEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCc-----ccchhHHHHHHHHHh----------------------
Q 033625 5 VALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRN---------------------- 56 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~---------------------- 56 (115)
+.+++..-.+.++++.+.+.... .|+..++.++.+.. .+.....+.+.++.+
T Consensus 93 vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~~~ir~ 172 (240)
T COG0284 93 VTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIRE 172 (240)
T ss_pred EEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHHHHHHHH
Confidence 56677777777777774433333 77888888876553 333333344443332
Q ss_pred hC-CCCcEEEEcCCCh--------h--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 57 RY-PSLDIEVDGGLGP--------S--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 57 ~~-~~~~i~~dGGI~~--------~--ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
.. +++ ..+.=||.+ . +..+...+|+|.+|+|+.|+.++||.++++++.+.+..
T Consensus 173 ~~g~~~-~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~ 236 (240)
T COG0284 173 ILGPDF-LILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIAR 236 (240)
T ss_pred hcCCCc-EEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHH
Confidence 11 122 333344444 2 24566779999999999999999999999988877654
No 191
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.66 E-value=0.015 Score=48.19 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=58.3
Q ss_pred ceEEEecCCC-CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~t-~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
++|+++.... .++..+.+++ .++|+|.+-+.+ | ..+..++.|+++++.+|+++|.+=...|.+....+.++
T Consensus 231 ~Vgaavg~~~~~~~~~~~l~~--ag~d~i~id~a~----G--~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a 302 (495)
T PTZ00314 231 LVGAAISTRPEDIERAAALIE--AGVDVLVVDSSQ----G--NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA 302 (495)
T ss_pred EEEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC----C--CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc
Confidence 4788888642 2577777773 489998764432 2 22345678899998888888888666778999999999
Q ss_pred CCCEEEEc
Q 033625 81 GANCIVAG 88 (115)
Q Consensus 81 Gad~iv~G 88 (115)
|||++.+|
T Consensus 303 Gad~I~vg 310 (495)
T PTZ00314 303 GADGLRIG 310 (495)
T ss_pred CCCEEEEC
Confidence 99999865
No 192
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.65 E-value=0.018 Score=47.05 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=51.0
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCC--Ccc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHHcCCCE
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFG--GQK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANC 84 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq~---~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~~Gad~ 84 (115)
.+....+++ .++|+|-+ ++.||.. .+. +....+.-+.++++. ..++|+.+||||. ...+...+++|||.
T Consensus 276 ~~~a~~l~~--aGad~i~v-g~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 276 AEQAKALID--AGADGLRV-GIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred HHHHHHHHH--hCCCEEEE-CCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 344444441 58999977 6778732 111 111223333333332 1369999999995 67888889999999
Q ss_pred EEEcccccCC
Q 033625 85 IVAGSSVFGA 94 (115)
Q Consensus 85 iv~Gsaif~~ 94 (115)
+.+||.+-+.
T Consensus 353 V~~G~~~a~~ 362 (450)
T TIGR01302 353 VMLGSLLAGT 362 (450)
T ss_pred EEECchhhcC
Confidence 9999988653
No 193
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.011 Score=46.36 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=58.9
Q ss_pred CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHHH
Q 033625 37 GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVEDA 111 (115)
Q Consensus 37 G~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~~ 111 (115)
|.+|....+..++-++++++.. .++||.-.|||. .+..-+...+||+.+=++|+++.. +.. .+-.+.|.+.+++.
T Consensus 217 GLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~ 295 (310)
T COG0167 217 GLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEK 295 (310)
T ss_pred CcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHc
Confidence 4567778889999999998763 479999999996 566888999999999999997754 554 55566677666653
No 194
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.62 E-value=0.026 Score=42.67 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs 89 (115)
.|++..+.+- . ...+++-+.-.+--. |..-. .+-++++.+.. ..|++++|||+ .+.+..+.+.|||-+++||
T Consensus 32 ~p~~~a~~~~-~-~g~~~lhivDLd~a~-g~~~n---~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT 104 (243)
T TIGR01919 32 SLESAAKWWE-Q-GGAEWIHLVDLDAAF-GGGNN---EMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGT 104 (243)
T ss_pred CHHHHHHHHH-h-CCCeEEEEEECCCCC-CCcch---HHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3445555554 1 245555544333323 33333 33466665554 48999999996 6777889999999999999
Q ss_pred cccCCCCH
Q 033625 90 SVFGAPEP 97 (115)
Q Consensus 90 aif~~~d~ 97 (115)
..++.++.
T Consensus 105 ~a~~~p~~ 112 (243)
T TIGR01919 105 AALENPWW 112 (243)
T ss_pred hhhCCHHH
Confidence 99876654
No 195
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.59 E-value=0.022 Score=45.47 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=57.4
Q ss_pred ceEEEecCCC-CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~t-~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
.+|.++.+.. ..+..+.+++ .++|++.|-+.+ | ......+.++++++.+|+++|.+=.=.|.+....|.++
T Consensus 98 ~V~aavg~~~~~~er~~~L~~--agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a 169 (352)
T PF00478_consen 98 LVAAAVGTRDDDFERAEALVE--AGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA 169 (352)
T ss_dssp CEEEEEESSTCHHHHHHHHHH--TT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT
T ss_pred eEEEEecCCHHHHHHHHHHHH--cCCCEEEccccC-c-----cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc
Confidence 4788888876 4577777763 589999876554 3 22345667888888888787776555789999999999
Q ss_pred CCCEEEEc
Q 033625 81 GANCIVAG 88 (115)
Q Consensus 81 Gad~iv~G 88 (115)
|||.+-+|
T Consensus 170 Gad~vkVG 177 (352)
T PF00478_consen 170 GADAVKVG 177 (352)
T ss_dssp T-SEEEES
T ss_pred CCCEEEEe
Confidence 99999998
No 196
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.57 E-value=0.027 Score=41.94 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=45.0
Q ss_pred EEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625 28 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 28 ~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.++++.+.-.-+.+.+. ++.++++++. .++|+.+.|||+ .+.+..+.+.|+|.+++|++++.
T Consensus 156 ~ii~tdI~~dGt~~G~d---~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPN---LELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred EEEEEECCccccCCCCC---HHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 55555555532334433 4556666665 369999999996 67888899999999999999875
No 197
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.57 E-value=0.013 Score=44.71 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
.+.+.++.+++ -++|.|| ..+|+.-..+.++.|+++.+...+..|.+=||||.+|++.+.++|+.-|=.+
T Consensus 129 d~~~al~~l~~--lG~~rIL------TSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 129 NPLNALKQLAD--LGVARIL------TSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred CHHHHHHHHHH--cCCCEEE------CCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEeeC
Confidence 45566666662 2688887 3334444667888888887765555599999999999999999999877443
No 198
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.57 E-value=0.089 Score=35.49 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=65.8
Q ss_pred EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHH-hhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLR-NRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~-~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
||.|.++++++.+++.+ +.++.|-| -.|.|+ |..| +.-+.|| ++...=.|-+.|.+=.+.+..+..+|
T Consensus 1 gv~l~~d~~~~~l~~~L---~~l~lI~i--~FP~F~DGRgf-----S~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~G 70 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDL---DRLPLIAI--DFPKFTDGRGF-----SQARLLRERYGYTGELRAVGDVLRDQLFYLRRCG 70 (110)
T ss_pred CeecCCCCCHHHHHhhc---cCCCEEEE--ECCCcCCchHh-----HHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcC
Confidence 78899999999999999 77877754 568874 4443 4456666 44445679999999999999999999
Q ss_pred CCEEEEcccccCCCCHHHHHHHHH
Q 033625 82 ANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 82 ad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
.|.+.+-. ..+++...+.+.
T Consensus 71 Fdsf~l~~----~~~~~~~~~~l~ 90 (110)
T PF06073_consen 71 FDSFELRE----DQDPEDALAALS 90 (110)
T ss_pred CCEEEeCC----CCCHHHHHHHHh
Confidence 99997653 345555544443
No 199
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=96.56 E-value=0.021 Score=45.08 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=54.5
Q ss_pred HHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCC
Q 033625 16 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGA 94 (115)
Q Consensus 16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~ 94 (115)
+.+.+++ .++|+|-|-. ..+..+. ....++..+++++.. ++|+.+.|||+++.+..+++.| +|.+.+|+.+...
T Consensus 246 ~~~~l~~-~g~d~i~vs~--g~~~~~~-~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 246 LAKELNK-RGLAYLHLVE--PRVAGNP-EDQPPDFLDFLRKAF-KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIAN 320 (338)
T ss_pred HHHHHHH-cCCcEEEEec--CCCCCcc-cccchHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhC
Confidence 3344433 3589997521 1222222 222334455555553 6999999999999999998876 9999999999988
Q ss_pred CCHHHHH
Q 033625 95 PEPAHVI 101 (115)
Q Consensus 95 ~d~~~~~ 101 (115)
+++-+.+
T Consensus 321 P~~~~k~ 327 (338)
T cd02933 321 PDLVERL 327 (338)
T ss_pred cCHHHHH
Confidence 8875443
No 200
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.56 E-value=0.021 Score=45.30 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=54.2
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCC--------C---------cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hh
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG--------G---------QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PS 72 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~--------g---------q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ 72 (115)
+..+..+.+. + .++|+|.+-+ ..|.. + ..+...+.+-|.++++...++||.++|||+ ..
T Consensus 198 ~s~~~a~~l~-~-~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~ 274 (352)
T PRK05437 198 ISKETAKRLA-D-AGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGL 274 (352)
T ss_pred CcHHHHHHHH-H-cCCCEEEECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHH
Confidence 5566666655 2 4899998743 22211 0 011222455566666654579999999996 67
Q ss_pred hHHHHHHcCCCEEEEcccccCC
Q 033625 73 TIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 73 ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.+..++..|||.+-+|++++.+
T Consensus 275 dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 275 DIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred HHHHHHHcCCCEEEEhHHHHHH
Confidence 7888889999999999987653
No 201
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.56 E-value=0.016 Score=42.81 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=45.4
Q ss_pred HHHhHhCCCCCCEEEEEeee--CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH--cCCCEEEEcccc
Q 033625 16 VYPLVEGANPVEMVLVMTVE--PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS--AGANCIVAGSSV 91 (115)
Q Consensus 16 ~~~~~~~~~~vD~vlvm~v~--pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~--~Gad~iv~Gsai 91 (115)
+.+|. ..+|++++-+.. +|-+|+.|.-..+ +++ ...|+...||+|++|+.++.. .+..++=+.|.+
T Consensus 116 ~~~~~---~~~d~~LlDs~~~~~GGtG~~~dw~~~---~~~----~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 116 INKYK---GFVDLFIIDTPSVSYGGTGQTYDWTIL---KHI----KDIPYLIAGGINSENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred HHHHH---hhCCEEEEcCCCCCCCcCCcEeChHHh---hhc----cCCCEEEECCCCHHHHHHHHhcCCCCCEEEccccc
Confidence 44554 568999998843 2445677754333 222 235899999999999999763 466777677766
Q ss_pred c
Q 033625 92 F 92 (115)
Q Consensus 92 f 92 (115)
=
T Consensus 186 E 186 (207)
T PRK13958 186 E 186 (207)
T ss_pred C
Confidence 3
No 202
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=96.55 E-value=0.0077 Score=48.04 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=40.6
Q ss_pred cchhHHHHHHHH-HhhC-CCCcEEEEcCCChhhHHHHHHcC--CCEEEEcccccCC
Q 033625 43 FMPEMMDKVRSL-RNRY-PSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGA 94 (115)
Q Consensus 43 ~~~~~~~ki~~l-~~~~-~~~~i~~dGGI~~~ni~~l~~~G--ad~iv~Gsaif~~ 94 (115)
+.++...++++. .+.. +++.|.+.||||++++.++.++| +|.+=+|+.|...
T Consensus 261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 445555555542 2333 78999999999999999999999 7999999998875
No 203
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.51 E-value=0.026 Score=46.16 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=59.3
Q ss_pred eEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 3 PGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 3 ~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
+|-++... ...+..+.+++ .++|.|.|-+.+. ......+.|+++++.++++++.+=+..|.+....+.++|
T Consensus 215 V~aav~~~~~~~~r~~~L~~--aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 215 VGAAVGTREFDKERAEALVK--AGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG 286 (450)
T ss_pred EEEEecCchhHHHHHHHHHH--hCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence 55666653 23466666662 4799998766552 223567778999988889999998899999999999999
Q ss_pred CCEEEEc
Q 033625 82 ANCIVAG 88 (115)
Q Consensus 82 ad~iv~G 88 (115)
||++.+|
T Consensus 287 ad~i~vg 293 (450)
T TIGR01302 287 ADGLRVG 293 (450)
T ss_pred CCEEEEC
Confidence 9999765
No 204
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.48 E-value=0.033 Score=46.34 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=60.5
Q ss_pred ceEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 2 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 2 k~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
++|.|+.+. ...+..+.+++ .++|.|.+-+.+ | .....++.++++++.+|+.++.+-+=.|.+....+.++
T Consensus 238 ~vgaavg~~~~~~~r~~~l~~--ag~d~i~iD~~~----g--~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a 309 (505)
T PLN02274 238 LVGAAIGTRESDKERLEHLVK--AGVDVVVLDSSQ----G--DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA 309 (505)
T ss_pred EEEEEEcCCccHHHHHHHHHH--cCCCEEEEeCCC----C--CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc
Confidence 478888874 34578888873 489999876632 2 23456677899998888887777666789999999999
Q ss_pred CCCEEEEc
Q 033625 81 GANCIVAG 88 (115)
Q Consensus 81 Gad~iv~G 88 (115)
|||++++|
T Consensus 310 GaD~i~vg 317 (505)
T PLN02274 310 GVDGLRVG 317 (505)
T ss_pred CcCEEEEC
Confidence 99999886
No 205
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=96.48 E-value=0.038 Score=44.48 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=54.0
Q ss_pred EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc------cchhHHHHHHHHHhh------CCCCcEEEEcCC-C
Q 033625 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK------FMPEMMDKVRSLRNR------YPSLDIEVDGGL-G 70 (115)
Q Consensus 4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~------~~~~~~~ki~~l~~~------~~~~~i~~dGGI-~ 70 (115)
++=+.+....+.+...++. ..+|+|.|-....|....+ +...+..-+.++++. ..+++|.++||| +
T Consensus 218 ~vK~~~~~~~~~~a~~~~~-~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~ 296 (392)
T cd02808 218 GVKLVAGHGEGDIAAGVAA-AGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRT 296 (392)
T ss_pred EEEECCCCCHHHHHHHHHH-cCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCC
Confidence 4444444345555555532 3499998766654432111 111122333333321 246999999999 6
Q ss_pred hhhHHHHHHcCCCEEEEccccc
Q 033625 71 PSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 71 ~~ni~~l~~~Gad~iv~Gsaif 92 (115)
...+......|||.+-+|+...
T Consensus 297 g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 297 GADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred HHHHHHHHHcCCCeeeechHHH
Confidence 7888888999999999998744
No 206
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.47 E-value=0.068 Score=35.95 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=58.0
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCE
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~ 84 (115)
-+.+.+|.+.+...+.+ ...|+|.+-+..+. ..+...+-++++++..+ ++++.+-|....+...++.++|.|.
T Consensus 32 ~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~~-----~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 32 YTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSGG-----HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE 105 (122)
T ss_pred ECCCCCCHHHHHHHHHH-cCCCEEEEcccchh-----hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE
Confidence 46678898877666644 68999987555432 22233344666676644 6667777778888899999999998
Q ss_pred EEEcccccCCCCHHHHHHHHH
Q 033625 85 IVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 85 iv~Gsaif~~~d~~~~~~~l~ 105 (115)
++-. ..+++..+.-|+
T Consensus 106 ~~~~-----~~~~~~~~~~~~ 121 (122)
T cd02071 106 IFGP-----GTSIEEIIDKIR 121 (122)
T ss_pred EECC-----CCCHHHHHHHHh
Confidence 7443 344555544443
No 207
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.44 E-value=0.05 Score=43.61 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=58.6
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS 90 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa 90 (115)
..+.....++ .++|.|.+ .+-|...-...+..++-+.++++.. ++++.+||||+- ..+-..+..|||.+.+|+.
T Consensus 246 ~~eda~~a~~--~G~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~ 320 (361)
T cd04736 246 TAEDAKRCIE--LGADGVIL--SNHGGRQLDDAIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRA 320 (361)
T ss_pred CHHHHHHHHH--CCcCEEEE--CCCCcCCCcCCccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 3444444441 58999875 2334332222244667777777654 599999999974 4566777999999999988
Q ss_pred cc-C-----CCCHHHHHHHHHHHHH
Q 033625 91 VF-G-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 91 if-~-----~~d~~~~~~~l~~~~~ 109 (115)
+. . .+-..+.++.|++.++
T Consensus 321 ~l~~la~~G~~gv~~~l~~l~~el~ 345 (361)
T cd04736 321 TLYGLAARGEAGVSEVLRLLKEEID 345 (361)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 54 2 2233455555555544
No 208
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.43 E-value=0.051 Score=41.78 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc--CCCEEEEcc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGS 89 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~--Gad~iv~Gs 89 (115)
.+.+..+.+ ..++.+++=.+.-.-..+-+.. +.++++++. .++|+.+.||++ .+.+..|.+. |...+++|+
T Consensus 166 ~e~~~~~~~--~g~~eii~TdI~rDGtl~G~d~---el~~~l~~~-~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGk 239 (262)
T PLN02446 166 DEETLEFLA--AYCDEFLVHGVDVEGKRLGIDE---ELVALLGEH-SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGS 239 (262)
T ss_pred HHHHHHHHH--hCCCEEEEEEEcCCCcccCCCH---HHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEe
Confidence 444456552 3589998877766444444443 445555555 579999999996 7888888887 578899999
Q ss_pred cc--cCCC-CHHHH
Q 033625 90 SV--FGAP-EPAHV 100 (115)
Q Consensus 90 ai--f~~~-d~~~~ 100 (115)
++ |... +.+++
T Consensus 240 Al~~y~g~~~l~ea 253 (262)
T PLN02446 240 ALDIFGGNLPYDDV 253 (262)
T ss_pred eHHHhCCCccHHHH
Confidence 99 7644 33433
No 209
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=96.41 E-value=0.035 Score=46.00 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=68.7
Q ss_pred EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-Cc-------ccchhH---------------------HHHHHHH
Q 033625 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQ-------KFMPEM---------------------MDKVRSL 54 (115)
Q Consensus 4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq-------~~~~~~---------------------~~ki~~l 54 (115)
.+.+||-+-.+.++++++..++-=+|++-+.|||-. =| +.-... .+.++++
T Consensus 118 AiTv~pymG~Dsl~pfl~~~~kgvfvL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~~g~VvGAT~p~~~~~i 197 (477)
T PRK05500 118 AVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQLGLEVGTTNPEVLAKI 197 (477)
T ss_pred EEEECCccCccchHHHHhcCCCcEEEEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Confidence 578999999999999994411222666667899832 11 111111 1223444
Q ss_pred HhhCCCCcEE-----EEcCCChhhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625 55 RNRYPSLDIE-----VDGGLGPSTIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113 (115)
Q Consensus 55 ~~~~~~~~i~-----~dGGI~~~ni~~l~~~Gad------~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~ 113 (115)
|+..|+.+|. +=|| ++.++..+|.| .+.++++|..++||.+.++.|++.+...+.
T Consensus 198 R~~~p~~~iL~PGiGAQGg----~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~~ 263 (477)
T PRK05500 198 RQIAPERLILLRSIWAEKG----NLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIRQ 263 (477)
T ss_pred HHhCCCCEEEccccccCCC----CHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4444443322 3333 36666778887 889999999999999999999998876543
No 210
>PLN02535 glycolate oxidase
Probab=96.40 E-value=0.082 Score=42.40 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=52.1
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa 90 (115)
.+......+ .++|.|.+- +-|-....+.+.++.-|.++++.. .++||.+||||. ...+...+..|||.+.+|+.
T Consensus 234 ~~dA~~a~~--~GvD~I~vs--n~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~ 309 (364)
T PLN02535 234 REDAIKAVE--VGVAGIIVS--NHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRP 309 (364)
T ss_pred HHHHHHHHh--cCCCEEEEe--CCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 344444441 589999753 233222234456677777776543 469999999997 56677788999999999988
Q ss_pred cc
Q 033625 91 VF 92 (115)
Q Consensus 91 if 92 (115)
.+
T Consensus 310 ~l 311 (364)
T PLN02535 310 VI 311 (364)
T ss_pred HH
Confidence 64
No 211
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.39 E-value=0.05 Score=43.92 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=60.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGP-STIAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G 88 (115)
+..+..+..++ .++|.|.|- +-|-...+..+.+++-|.++++.. .++|+.+||||.- ..+-..+..|||.+-+|
T Consensus 262 ~~~~dA~~a~~--~G~d~I~vs--nhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 262 LHPDDARRAVE--AGVDGVVVS--NHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIG 337 (383)
T ss_pred CCHHHHHHHHH--CCCCEEEEc--CCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence 44555555441 589998763 333222233455666777776654 3699999999974 55777779999999999
Q ss_pred cccc-C-----CCCHHHHHHHHHHHHH
Q 033625 89 SSVF-G-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 89 saif-~-----~~d~~~~~~~l~~~~~ 109 (115)
+.+. . .+-..+.++.|++.++
T Consensus 338 r~~l~~l~~~G~~gv~~~l~~l~~El~ 364 (383)
T cd03332 338 RPYAYGLALGGEDGVEHVLRNLLAELD 364 (383)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 8743 2 1223455555555444
No 212
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.032 Score=42.44 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=68.7
Q ss_pred EEEecCCCCHH-hHHHhHhCCCCCCEEEEEee-eCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH
Q 033625 4 GVALKPGTSVE-EVYPLVEGANPVEMVLVMTV-EPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS 79 (115)
Q Consensus 4 Glal~p~t~~~-~~~~~~~~~~~vD~vlvm~v-~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~ 79 (115)
|...-|.|.-+ .+..-+ ..+-..-+|+- -|=-+|+-.. ++ -|+-+++.. ++|+.||-|| ++....+..+
T Consensus 130 GF~VlPY~~dD~v~arrL---ee~GcaavMPl~aPIGSg~G~~n~~---~l~iiie~a-~VPviVDAGiG~pSdAa~aME 202 (262)
T COG2022 130 GFVVLPYTTDDPVLARRL---EEAGCAAVMPLGAPIGSGLGLQNPY---NLEIIIEEA-DVPVIVDAGIGTPSDAAQAME 202 (262)
T ss_pred CCEEeeccCCCHHHHHHH---HhcCceEeccccccccCCcCcCCHH---HHHHHHHhC-CCCEEEeCCCCChhHHHHHHh
Confidence 33444444443 334444 23344455654 2433555543 33 355666665 8999999999 5788999999
Q ss_pred cCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625 80 AGANCIVAGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
.|+|.+.+-++|-.+.||...++.++..++
T Consensus 203 lG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 203 LGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred cccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 999999999999999999999999987665
No 213
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.32 E-value=0.03 Score=46.19 Aligned_cols=77 Identities=26% Similarity=0.438 Sum_probs=57.4
Q ss_pred eEEEec--CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625 3 PGVALK--PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 80 (115)
Q Consensus 3 ~Glal~--p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~ 80 (115)
+|-++. | .+.+..+.+++ .++|.+.+-+.+ | + ....++.++.+++..|+.|+.+-++.|.+....+.++
T Consensus 219 V~aai~~~~-~~~e~a~~L~~--agvdvivvD~a~-g---~--~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a 289 (486)
T PRK05567 219 VGAAVGVGA-DNEERAEALVE--AGVDVLVVDTAH-G---H--SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA 289 (486)
T ss_pred EEeecccCc-chHHHHHHHHH--hCCCEEEEECCC-C---c--chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc
Confidence 344444 4 44788888873 489966433222 2 2 2457778899998888899999999999999999999
Q ss_pred CCCEEEEc
Q 033625 81 GANCIVAG 88 (115)
Q Consensus 81 Gad~iv~G 88 (115)
|||++.+|
T Consensus 290 Gad~i~vg 297 (486)
T PRK05567 290 GADAVKVG 297 (486)
T ss_pred CCCEEEEC
Confidence 99999876
No 214
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.065 Score=40.76 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~G 88 (115)
++.+..+.+. + .++..+++=-+.-.-.-+-...+ .++++.+.. ++|+.+.|||+ .+.+..+.+. |+..+++|
T Consensus 148 ~~~~l~~~~~-~-~g~~~ii~TdI~~DGtl~G~n~~---l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG 221 (241)
T COG0106 148 ELEELAKRLE-E-VGLAHILYTDISRDGTLSGPNVD---LVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVG 221 (241)
T ss_pred CHHHHHHHHH-h-cCCCeEEEEecccccccCCCCHH---HHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEe
Confidence 3445566665 1 24666665444332121222223 355555554 89999999996 6889999999 89999999
Q ss_pred ccccCCC-CHHHHHHHHH
Q 033625 89 SSVFGAP-EPAHVISLMR 105 (115)
Q Consensus 89 saif~~~-d~~~~~~~l~ 105 (115)
+|++... ++.++.+.++
T Consensus 222 ~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 222 RALYEGKFTLEEALACVR 239 (241)
T ss_pred hHHhcCCCCHHHHHHHHh
Confidence 9998654 6777776665
No 215
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.30 E-value=0.042 Score=43.38 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=52.8
Q ss_pred HhHhCCCCCCEEEEEeeeCCC----CCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccc
Q 033625 18 PLVEGANPVEMVLVMTVEPGF----GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSV 91 (115)
Q Consensus 18 ~~~~~~~~vD~vlvm~v~pG~----~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsai 91 (115)
..+++ .++|||-|- .|. ..+.+.....+-.+++++. .++|+.+-|+| +++.+.++++.| +|.+.+|+.+
T Consensus 234 ~~l~~-~gvD~i~vs---~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ 308 (337)
T PRK13523 234 KWMKE-QGVDLIDVS---SGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGREL 308 (337)
T ss_pred HHHHH-cCCCEEEeC---CCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHH
Confidence 34433 468999753 331 1111111122334556554 36899999998 688899998877 9999999999
Q ss_pred cCCCCHHHHHH
Q 033625 92 FGAPEPAHVIS 102 (115)
Q Consensus 92 f~~~d~~~~~~ 102 (115)
...+++.+.+.
T Consensus 309 iadP~~~~k~~ 319 (337)
T PRK13523 309 LRNPYFPRIAA 319 (337)
T ss_pred HhCccHHHHHH
Confidence 99888755443
No 216
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=96.28 E-value=0.041 Score=46.69 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=49.9
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCC--CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCC--EEEE
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPG--FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGAN--CIVA 87 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG--~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad--~iv~ 87 (115)
++.+.+|. +.+|++|+-+-.|+ -+|+.|.-..+ + ......|+.+.|||+++|+.++++ ..+. ++=+
T Consensus 119 ~~~~~~~~---~~~d~~LlDs~~~~~GGtG~~fdw~~~---~---~~~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDv 189 (610)
T PRK13803 119 FEVLDEYR---DHVKYFLFDNKTKIYGGSGKSFDWEKF---Y---NYNFKFPFFLSGGLSPTNFDRIINLTHPQILGIDV 189 (610)
T ss_pred HHHHHhhh---ccCCEEEEcCCCCCCCCCCCccChHHh---h---hcccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEc
Confidence 45566666 67899999986654 45667764433 2 222346899999999999999876 4455 5666
Q ss_pred cccccCC
Q 033625 88 GSSVFGA 94 (115)
Q Consensus 88 Gsaif~~ 94 (115)
.|.+-.+
T Consensus 190 sSGvE~~ 196 (610)
T PRK13803 190 SSGFEDS 196 (610)
T ss_pred cCcccCC
Confidence 7777643
No 217
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.27 E-value=0.056 Score=42.76 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=52.1
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS 79 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~ 79 (115)
+..|+.+...-+- .++|++.+ +..||.. |.....-.+..+.++++.. ++|+.+||||. ...+...+.
T Consensus 147 ~V~t~e~a~~l~~---aGad~i~v-g~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa 221 (326)
T PRK05458 147 NVGTPEAVRELEN---AGADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIR 221 (326)
T ss_pred ecCCHHHHHHHHH---cCcCEEEE-CCCCCcccccccccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHH
Confidence 3445444433333 68999654 4455521 1111111444566666543 69999999995 677888889
Q ss_pred cCCCEEEEcccccC
Q 033625 80 AGANCIVAGSSVFG 93 (115)
Q Consensus 80 ~Gad~iv~Gsaif~ 93 (115)
+|||.+.+|+++.+
T Consensus 222 ~GA~aV~vG~~~~~ 235 (326)
T PRK05458 222 FGATMVMIGSLFAG 235 (326)
T ss_pred hCCCEEEechhhcC
Confidence 99999999998874
No 218
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.27 E-value=0.041 Score=45.26 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
..+|++++-+ .+|-+|+.|.-..+ . ... ..|+...||+|++|+.+..+.++.++=+.|.+=.
T Consensus 373 ~~~d~~LlDs-~~GGtG~~~DW~~l---~---~~~-~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~ 434 (454)
T PRK09427 373 QHVDRYLLDN-GQGGTGQTFDWSLL---P---GQS-LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVES 434 (454)
T ss_pred cCCCEEEEcC-CCCCCCCccChHHh---h---hcc-cCCEEEECCCCHHHHHHHHhcCCCEEEeCCcccC
Confidence 3489999887 55667888864332 2 122 5689999999999999988899999888888853
No 219
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.27 E-value=0.014 Score=46.83 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=48.9
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCC--CCcccc---hhHHHHHHHHHh---h------CCCCcEEEEcCC-ChhhHHHH
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGF--GGQKFM---PEMMDKVRSLRN---R------YPSLDIEVDGGL-GPSTIAEA 77 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~~---~~~~~ki~~l~~---~------~~~~~i~~dGGI-~~~ni~~l 77 (115)
.+..+.+++ .++|.|.+ ...||. ++.... -..+..+.+..+ . ..++|+.+|||| +...+...
T Consensus 198 ~e~A~~l~~--aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakA 274 (368)
T PRK08649 198 YTTALHLMR--TGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKA 274 (368)
T ss_pred HHHHHHHHH--cCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHH
Confidence 344444441 68999976 566762 111111 112223333221 1 125899999999 57788888
Q ss_pred HHcCCCEEEEcccccC
Q 033625 78 ASAGANCIVAGSSVFG 93 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~ 93 (115)
+.+|||.+.+||.+..
T Consensus 275 lalGAd~Vm~Gs~fa~ 290 (368)
T PRK08649 275 IACGADAVMLGSPLAR 290 (368)
T ss_pred HHcCCCeecccchhcc
Confidence 8999999999998865
No 220
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.26 E-value=0.022 Score=45.98 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=52.4
Q ss_pred CCcccchhHHHHHHHHHhhCC-----CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC-CC-HHHHHHHHHHHHHH
Q 033625 39 GGQKFMPEMMDKVRSLRNRYP-----SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PE-PAHVISLMRKSVED 110 (115)
Q Consensus 39 ~gq~~~~~~~~ki~~l~~~~~-----~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~-~d-~~~~~~~l~~~~~~ 110 (115)
+|....+.++..+.++++... ++||...|||. .+.+-+++.+||+.+=++|+++.. ++ +.+..+.|.+.+++
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~ 323 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKK 323 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHH
Confidence 444455667777777766532 58999999995 788889999999999999998764 43 34555566666554
No 221
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.25 E-value=0.041 Score=43.13 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625 49 DKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 49 ~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~ 101 (115)
+..+++++.. ++|+.+.|++ +++.+.++++.| +|++.+|+.+...+++.+.+
T Consensus 282 ~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~ 335 (338)
T cd04733 282 EFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKL 335 (338)
T ss_pred HHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHH
Confidence 4455666654 7999999999 689999988876 99999999999888875544
No 222
>PRK06852 aldolase; Validated
Probab=96.24 E-value=0.021 Score=44.77 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCCCcEEEEcCCChh------hHHHHHH-cCCCEEEEcccccCCCCH--HHHHHHHHHHHHH
Q 033625 49 DKVRSLRNRYPSLDIEVDGGLGPS------TIAEAAS-AGANCIVAGSSVFGAPEP--AHVISLMRKSVED 110 (115)
Q Consensus 49 ~ki~~l~~~~~~~~i~~dGGI~~~------ni~~l~~-~Gad~iv~Gsaif~~~d~--~~~~~~l~~~~~~ 110 (115)
+.++++-+....+|+.+.||=+.+ .+....+ +|+.++++|+.||+.++| .+.++.++.++.+
T Consensus 219 e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 219 ELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred HHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 445555444435899999998853 2333446 899999999999999888 8899999987753
No 223
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=96.21 E-value=0.041 Score=47.53 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=56.1
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
.+.+.|.|=.-+-- .-..... +-.+|....| +..++.-+||+ ++.+..+.++|+|.|.+|+++.+++||.+.+
T Consensus 179 ~ga~iiGINnRdL~--tf~vd~~---~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~ 253 (695)
T PRK13802 179 AGAKVIGINARNLK--DLKVDVN---KYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAV 253 (695)
T ss_pred CCCCEEEEeCCCCc--cceeCHH---HHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHH
Confidence 47887765433332 1122233 3344444444 45567778887 7999999999999999999999999999998
Q ss_pred HHHHHH
Q 033625 102 SLMRKS 107 (115)
Q Consensus 102 ~~l~~~ 107 (115)
++|...
T Consensus 254 ~~l~~~ 259 (695)
T PRK13802 254 ERLVKA 259 (695)
T ss_pred HHHHhc
Confidence 888653
No 224
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.20 E-value=0.038 Score=45.86 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=49.3
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcc-----c-ch--hHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQK-----F-MP--EMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANC 84 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~-----~-~~--~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~ 84 (115)
+..+.+++ .++|+|-+ ++.||..... + .| ..+..+.++.+. .++|+.+|||| +...+....++|||.
T Consensus 294 ~~a~~~~~--aGad~I~v-g~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~GA~~ 369 (495)
T PTZ00314 294 DQAKNLID--AGADGLRI-GMGSGSICITQEVCAVGRPQASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALGADC 369 (495)
T ss_pred HHHHHHHH--cCCCEEEE-CCcCCcccccchhccCCCChHHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence 44444441 58998866 6677742211 1 11 222333333333 36999999996 577888888999999
Q ss_pred EEEcccccC
Q 033625 85 IVAGSSVFG 93 (115)
Q Consensus 85 iv~Gsaif~ 93 (115)
+.+|+.+-+
T Consensus 370 Vm~G~~~a~ 378 (495)
T PTZ00314 370 VMLGSLLAG 378 (495)
T ss_pred EEECchhcc
Confidence 999998765
No 225
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.10 E-value=0.055 Score=42.77 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=53.9
Q ss_pred eEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHc
Q 033625 3 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASA 80 (115)
Q Consensus 3 ~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~ 80 (115)
+|+++..... .+...+++++-..+|+|.+-+.++ ......+.|+++++.+|+.++.+ +=+ |.+....+.++
T Consensus 88 v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~a 160 (326)
T PRK05458 88 ASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENA 160 (326)
T ss_pred EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHc
Confidence 4556654322 356667773100349999888773 22345556888888888777666 223 89999999999
Q ss_pred CCCEEEEc
Q 033625 81 GANCIVAG 88 (115)
Q Consensus 81 Gad~iv~G 88 (115)
|+|.+.+|
T Consensus 161 Gad~i~vg 168 (326)
T PRK05458 161 GADATKVG 168 (326)
T ss_pred CcCEEEEC
Confidence 99999877
No 226
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.09 E-value=0.04 Score=45.45 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=50.6
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCC--CCcc---cchhHHHHHHHHHhhC--CCCcEEEEcCCC-hhhHHHHHHcCCCE
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGF--GGQK---FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGANC 84 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~---~~~~~~~ki~~l~~~~--~~~~i~~dGGI~-~~ni~~l~~~Gad~ 84 (115)
.+....+.+ .++|+|-+ ++-||. +++. +....+.-+.++++.. .++|+.+||||+ ...+...+.+|||.
T Consensus 280 ~e~a~~l~~--aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~ 356 (486)
T PRK05567 280 AEAARALIE--AGADAVKV-GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASA 356 (486)
T ss_pred HHHHHHHHH--cCCCEEEE-CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCE
Confidence 344444441 58999875 234441 2222 2222444454444432 369999999996 66788888999999
Q ss_pred EEEcccccCC
Q 033625 85 IVAGSSVFGA 94 (115)
Q Consensus 85 iv~Gsaif~~ 94 (115)
+.+||+|-+.
T Consensus 357 v~~G~~~a~~ 366 (486)
T PRK05567 357 VMLGSMLAGT 366 (486)
T ss_pred EEECcccccc
Confidence 9999999764
No 227
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.074 Score=40.45 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=59.3
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
++|++..+.+.. .++.++=+.=.+--+.|+.-..+. ++++.+.. +.|+++=|||+ .+.+..++++|++.+++|
T Consensus 31 ~~P~~~a~~~~~--~Ga~~lHlVDLdgA~~g~~~n~~~---i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiG 104 (241)
T COG0106 31 DDPLEVAKKWSD--QGAEWLHLVDLDGAKAGGPRNLEA---IKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIG 104 (241)
T ss_pred CCHHHHHHHHHH--cCCcEEEEeeccccccCCcccHHH---HHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEe
Confidence 467777777762 467887776556666666655444 45555443 78999999997 566778999999999999
Q ss_pred ccccCCCCH
Q 033625 89 SSVFGAPEP 97 (115)
Q Consensus 89 saif~~~d~ 97 (115)
|.-++.++.
T Consensus 105 t~av~~p~~ 113 (241)
T COG0106 105 TAAVKNPDL 113 (241)
T ss_pred cceecCHHH
Confidence 987665543
No 228
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.06 E-value=0.22 Score=34.44 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=59.5
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCC------ChhhHHHH
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGL------GPSTIAEA 77 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI------~~~ni~~l 77 (115)
+-|.+++|.+.+.+.+.+ ..+|+|.+-+..+. -.....+-++++++.. +++++.+=|.+ -.+..+.+
T Consensus 35 i~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~-----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l 108 (137)
T PRK02261 35 INLGVMTSQEEFIDAAIE-TDADAILVSSLYGH-----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKF 108 (137)
T ss_pred EECCCCCCHHHHHHHHHH-cCCCEEEEcCcccc-----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHH
Confidence 346788998887777744 68999987554442 2223344466666663 36777777766 34556789
Q ss_pred HHcCCCEEEEcccccC-CCCHHHHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFG-APEPAHVISLMRKSV 108 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~-~~d~~~~~~~l~~~~ 108 (115)
.+.|+|. +|. ..++.+.+..+++.+
T Consensus 109 ~~~G~~~------vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 109 KEMGFDR------VFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred HHcCCCE------EECcCCCHHHHHHHHHHHh
Confidence 9999764 454 346677777777654
No 229
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.04 E-value=0.098 Score=39.24 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=47.7
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsa 90 (115)
...+...+++ .++|++-+-+ ++.|. ...++.+++++ .++||..-||| +.+.+.++..+|+|.+.+|++
T Consensus 154 ~~~la~~l~~-aG~d~ihv~~---~~~g~---~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 154 DEELARLIEK-AGADIIHVDA---MDPGN---HADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHHH-hCCCEEEECc---CCCCC---CCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 3444445544 5799765433 33331 12345566665 47999999999 789999999999999999998
No 230
>PLN02363 phosphoribosylanthranilate isomerase
Probab=95.99 E-value=0.076 Score=40.58 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=44.1
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCCEEEEccccc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF 92 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif 92 (115)
..+|++|+-+- .|-+|..|.-..+ . ........|+...|||+++|+.++.+ .++.++=+.|.+=
T Consensus 168 ~~~D~~LlDs~-~GGtG~t~DW~~l---~-~~~~~~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE 232 (256)
T PLN02363 168 HLADWILVDSA-TGGSGKGFNWQNF---K-LPSVRSRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGIC 232 (256)
T ss_pred ccCCEEEEeCC-CCCCCCccCHHHh---c-ccccccCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCccc
Confidence 45899998864 3667787764332 1 00112245899999999999999764 6777777777774
No 231
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=95.91 E-value=0.13 Score=39.25 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=57.0
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
+.+.+-++- ..+|.|.+-.-. +|... .++.|+.+++.. +.|+.+=-|++++|+..+.+. +|++++||.+=+
T Consensus 167 ~~v~dtver-~~aDaVI~tG~~---TG~~~---d~~el~~a~~~~-~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~ 237 (263)
T COG0434 167 EAVKDTVER-GLADAVIVTGSR---TGSPP---DLEELKLAKEAV-DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKK 237 (263)
T ss_pred HHHHHHHHc-cCCCEEEEeccc---CCCCC---CHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHHH-cCceEEEEEEcc
Confidence 344443433 468998653222 33333 344566666554 499999999999999999998 999999998754
Q ss_pred CC---CH--HHHHHHHHHHHHH
Q 033625 94 AP---EP--AHVISLMRKSVED 110 (115)
Q Consensus 94 ~~---d~--~~~~~~l~~~~~~ 110 (115)
.. ++ .+.++++-+..++
T Consensus 238 ~G~~~n~VD~~Rv~~~v~~a~~ 259 (263)
T COG0434 238 GGVTWNPVDLERVRRFVEAARR 259 (263)
T ss_pred CCEecCccCHHHHHHHHHHHHH
Confidence 33 22 3555555555444
No 232
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.89 E-value=0.086 Score=41.37 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=52.8
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCC--------CC--------c---ccchhHHHHHHHHHhhCCCCcEEEEcCCC-
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGF--------GG--------Q---KFMPEMMDKVRSLRNRYPSLDIEVDGGLG- 70 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~--------~g--------q---~~~~~~~~ki~~l~~~~~~~~i~~dGGI~- 70 (115)
+..+....+. + .++|.|.+-+. .|. .+ . .+...+.+.+.++++..+++||.++|||+
T Consensus 190 ~s~~~a~~l~-~-~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~ 266 (326)
T cd02811 190 ISRETAKRLA-D-AGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN 266 (326)
T ss_pred CCHHHHHHHH-H-cCCCEEEECCC-CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 5566666655 2 58999987432 220 00 1 11222455666766665579999999985
Q ss_pred hhhHHHHHHcCCCEEEEcccccC
Q 033625 71 PSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 71 ~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
...+...+..|||.+-+|+++.+
T Consensus 267 ~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 267 GLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Confidence 66777788899999999987543
No 233
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.88 E-value=0.076 Score=42.33 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=51.6
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
.+.++.+++..+.+|+|.|-+.| | .....++.++++|+.+|+.+|.+=-=.|.+....|.++|||++-+|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~Ah-G-----hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVAN-G-----YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCC-C-----cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 46667777322479999876555 3 3345677789999888887755544468999999999999999877
No 234
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.88 E-value=0.075 Score=42.32 Aligned_cols=69 Identities=16% Similarity=0.373 Sum_probs=50.1
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~G 88 (115)
.+.++.++++-+.+|+|.+-+.| | .....++.|+++|+..|+. ..+.| =.|++....+.++|||.+.+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~Ah-G-----hs~~~i~~ik~ir~~~p~~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVAN-G-----YSEHFVEFVKLVREAFPEH-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCC-C-----cHHHHHHHHHHHHhhCCCC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 46677777443469999876554 3 2345667788888877653 44555 479999999999999999888
No 235
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.85 E-value=0.33 Score=33.41 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=54.0
Q ss_pred CCCCHH-hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 9 PGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 9 p~t~~~-~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
..++.+ .++... + ..+|.|.+-+...++- +..-+-++++++..+ ++++.+=|.+-.+....+.++|+|.+
T Consensus 38 ~~~s~e~~v~aa~-e-~~adii~iSsl~~~~~-----~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~- 109 (132)
T TIGR00640 38 LFQTPEEIARQAV-E-ADVHVVGVSSLAGGHL-----TLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEI- 109 (132)
T ss_pred CCCCHHHHHHHHH-H-cCCCEEEEcCchhhhH-----HHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEE-
Confidence 344444 445554 2 5899997754443322 222233455555443 56666655577778999999999877
Q ss_pred EcccccCCCCHHHHHHHHHHHHH
Q 033625 87 AGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 87 ~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
+....++.+.+..+.+.+.
T Consensus 110 ----~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 110 ----FGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred ----ECCCCCHHHHHHHHHHHHH
Confidence 3334577888887777553
No 236
>PRK14565 triosephosphate isomerase; Provisional
Probab=95.84 E-value=0.063 Score=40.69 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=53.5
Q ss_pred EEEeeeCCC---CCcccchhHHHHHH-HHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcccccCCCCHHHHHHH
Q 033625 30 LVMTVEPGF---GGQKFMPEMMDKVR-SLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 30 lvm~v~pG~---~gq~~~~~~~~ki~-~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
++++-+|-. +|....++-.+++. .+|+...+++|.-=|+++++|+.++... ++|++-+|++..+.+++..-++.
T Consensus 155 ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~ 233 (237)
T PRK14565 155 FIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ 233 (237)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence 455666732 56666655555533 4455555789999999999999998654 89999999998877776655543
No 237
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=95.78 E-value=0.087 Score=41.98 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=51.6
Q ss_pred CCCCEEEEEeeeCCCCC-cccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~ 101 (115)
.++|+|-|-. +.+.+ ..+. ..-.+++++.. +.|+.+-|+++++.+..+++.| +|.+.+|+++...+|+.+.+
T Consensus 261 ~giD~i~vs~--~~~~~~~~~~---~~~~~~ik~~~-~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 261 RGIAYLHMSE--PDWAGGEPYS---DAFREKVRARF-HGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARL 334 (362)
T ss_pred cCCCEEEecc--ccccCCcccc---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHH
Confidence 3689997643 32322 2222 12234455544 5789999999999999999988 99999999999888875554
Q ss_pred H
Q 033625 102 S 102 (115)
Q Consensus 102 ~ 102 (115)
+
T Consensus 335 ~ 335 (362)
T PRK10605 335 Q 335 (362)
T ss_pred h
Confidence 3
No 238
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.75 E-value=0.15 Score=33.65 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=50.8
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCC
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
+-+.+.+|.+.+...+.+ ...|+|.+-+.... . .+...+-++++++..+ +++|.+-|..-...-..+.+.|+|
T Consensus 31 ~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~~~----~-~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 31 IDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTT----H-MTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred EECCCCCCHHHHHHHHHH-cCCCEEEEeccccc----c-HHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe
Confidence 345678888877776644 57898876443221 1 2344555677777766 677777776655556678999999
Q ss_pred EEEE
Q 033625 84 CIVA 87 (115)
Q Consensus 84 ~iv~ 87 (115)
.++-
T Consensus 105 ~~~~ 108 (119)
T cd02067 105 AYFG 108 (119)
T ss_pred EEEC
Confidence 8754
No 239
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=95.74 E-value=0.12 Score=39.29 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=63.2
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 87 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~ 87 (115)
.+.|+|....|-+ .++|=+.++-+.....|+.. +++-+++..+.. .+|+.+-|||+ .+.++.++.+|||-+.+
T Consensus 29 ~GDpVelA~~Y~e--~GADElvFlDItAs~~gr~~---~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSI 102 (256)
T COG0107 29 AGDPVELAKRYNE--EGADELVFLDITASSEGRET---MLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSI 102 (256)
T ss_pred cCChHHHHHHHHH--cCCCeEEEEecccccccchh---HHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeee
Confidence 4678888888773 58999998888877777654 444455555543 69999999996 79999999999999999
Q ss_pred cccccCCCC
Q 033625 88 GSSVFGAPE 96 (115)
Q Consensus 88 Gsaif~~~d 96 (115)
.|+=...++
T Consensus 103 NsaAv~~p~ 111 (256)
T COG0107 103 NSAAVKDPE 111 (256)
T ss_pred ChhHhcChH
Confidence 987555454
No 240
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.71 E-value=0.21 Score=39.81 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=52.8
Q ss_pred CCCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC------
Q 033625 24 NPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA------ 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~------ 94 (115)
.++|.|.+-. +.| -|- -.+..++-+.++++.. .++|+.+||||. ...+-..+.+|||.+-+|+.++..
T Consensus 241 ~G~d~I~vsn-hGG--r~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 241 AGADGIWVSN-HGG--RQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred cCCCEEEEeC-CCC--ccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 5899987632 222 221 1244556677776543 369999999997 456667778999999999885432
Q ss_pred CCHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVE 109 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~ 109 (115)
+...+.++.|++.++
T Consensus 318 ~gv~~~l~~l~~El~ 332 (351)
T cd04737 318 QGVASVLEHLNKELK 332 (351)
T ss_pred HHHHHHHHHHHHHHH
Confidence 223455555555444
No 241
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.69 E-value=0.038 Score=41.91 Aligned_cols=52 Identities=31% Similarity=0.424 Sum_probs=37.8
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCC
Q 033625 38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 38 ~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~ 95 (115)
..+.+..++ .+++... ..++.+=|||+ .|..+++.++|||.+|+|..+.++.
T Consensus 175 ga~~Pv~~e---~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 175 GAGDPVPVE---MVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CCCCCcCHH---HHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 344444444 4444432 34899999996 6788899999999999999997654
No 242
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.69 E-value=0.033 Score=41.25 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=43.1
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHH-cCCCEE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAAS-AGANCI 85 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~-~Gad~i 85 (115)
+.+.++.+++ -++|.|| ..+|..-..+.++.|+++.+.. ..+.|.+-|||+.+|++.+.+ +|+.-|
T Consensus 129 ~~~al~~L~~--lG~~rVL------TSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 129 PEEALEQLIE--LGFDRVL------TSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp HHHHHHHHHH--HT-SEEE------ESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred HHHHHHHHHh--cCCCEEE------CCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence 4566676662 2788887 2233334456677788776543 468899999999999999977 898765
No 243
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=95.68 E-value=0.21 Score=39.65 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=51.9
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCcEEEEcCCC-hhhHHHHHHc
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLG-PSTIAEAASA 80 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~i~~dGGI~-~~ni~~l~~~ 80 (115)
.++--+..+..+... + .++|.|.+-. -|-...+....+.+-+.++++ ...++||.+||||. ...+-..+..
T Consensus 217 ivKgv~~~~dA~~a~-~-~G~d~I~vsn--hgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaL 292 (344)
T cd02922 217 VLKGVQTVEDAVLAA-E-YGVDGIVLSN--HGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCL 292 (344)
T ss_pred EEEcCCCHHHHHHHH-H-cCCCEEEEEC--CCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHc
Confidence 333334455555555 1 5899998753 331111222233333444443 22469999999997 5677788899
Q ss_pred CCCEEEEcccccC
Q 033625 81 GANCIVAGSSVFG 93 (115)
Q Consensus 81 Gad~iv~Gsaif~ 93 (115)
|||.+-+|+.++.
T Consensus 293 GA~aV~iG~~~l~ 305 (344)
T cd02922 293 GAKAVGLGRPFLY 305 (344)
T ss_pred CCCEEEECHHHHH
Confidence 9999999988654
No 244
>PLN02979 glycolate oxidase
Probab=95.63 E-value=0.24 Score=39.82 Aligned_cols=93 Identities=17% Similarity=0.313 Sum_probs=58.3
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa 90 (115)
.+..+...+ .++|.|.|-. -|....+..+.+++-+.++++. ..++++.+||||+. ..+-..+..|||.+-+|+.
T Consensus 234 ~~dA~~a~~--~Gvd~I~Vsn--hGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp 309 (366)
T PLN02979 234 GEDARIAIQ--AGAAGIIVSN--HGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 309 (366)
T ss_pred HHHHHHHHh--cCCCEEEECC--CCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHH
Confidence 444444441 5899997532 2323334455667777777654 35799999999974 4466667899999999987
Q ss_pred cc-C-----CCCHHHHHHHHHHHHH
Q 033625 91 VF-G-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 91 if-~-----~~d~~~~~~~l~~~~~ 109 (115)
+. . .+...+.++.|++.++
T Consensus 310 ~L~~la~~G~~Gv~~~l~~l~~El~ 334 (366)
T PLN02979 310 VVFSLAAEGEAGVRKVLQMLRDEFE 334 (366)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 43 2 2233455555555443
No 245
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.62 E-value=0.23 Score=39.93 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=56.4
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa 90 (115)
.+..+...+ .++|.|.| +.|.|- ...-.+..++-|.++++.. .++||.+||||. ...+...+..|||.+-+|..
T Consensus 239 ~eda~~a~~--~Gvd~I~V-S~HGGr-q~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALK--AGASGIWV-TNHGGR-QLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHH--cCcCEEEE-CCcCcc-CCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 344444441 58998864 455551 1112344456667776543 469999999997 44555666799999999977
Q ss_pred -ccC-----CCCHHHHHHHHHHHHH
Q 033625 91 -VFG-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 91 -if~-----~~d~~~~~~~l~~~~~ 109 (115)
+|. .+.....++.|++.++
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~El~ 339 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKELK 339 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 342 2233455555555544
No 246
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.59 E-value=0.093 Score=39.63 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=66.3
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHH-------hh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-------NR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~-------~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.++|+|+ .+-|.+.+++.+..+..|++.. .. .-++|+...-|++.=+.+.-..+||.++=+||+|-+-
T Consensus 144 ~GaDiIQ---TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~L 220 (242)
T PF04481_consen 144 AGADIIQ---TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRL 220 (242)
T ss_pred hCCcEEE---cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCcccchhHHhhhc
Confidence 5899998 6777777777666666555442 11 2479999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVED 110 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~~ 110 (115)
.|..+++..+|++.+.
T Consensus 221 n~~~aMva~vr~l~~a 236 (242)
T PF04481_consen 221 NDEVAMVAAVRSLVEA 236 (242)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8887777777765543
No 247
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.58 E-value=0.12 Score=39.41 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
.+.+.|+|=.-+. ..-...... -.++....| +..+.+-+||+ ++.+..+... +|.+.+|+++.+++||.+.+
T Consensus 170 ~ga~iiGINnRdL--~t~~vd~~~---~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~ 243 (247)
T PRK13957 170 CGAEIIGINTRDL--DTFQIHQNL---VEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAW 243 (247)
T ss_pred CCCCEEEEeCCCC--ccceECHHH---HHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHH
Confidence 4777776433322 222223333 344444444 45567778986 5888888887 99999999999999999888
Q ss_pred HHH
Q 033625 102 SLM 104 (115)
Q Consensus 102 ~~l 104 (115)
++|
T Consensus 244 ~~l 246 (247)
T PRK13957 244 LSL 246 (247)
T ss_pred HHh
Confidence 765
No 248
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.11 Score=40.94 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=60.7
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSS 90 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsa 90 (115)
..+...+++ .++|.+. ||.-...|... +.-++.|.++++..+++|+.+=|+| +.+...++++ .|+|.+-+|++
T Consensus 155 ~~ia~~~~~-~g~~~lt---VHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRg 230 (323)
T COG0042 155 LEIARILED-AGADALT---VHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRG 230 (323)
T ss_pred HHHHHHHHh-cCCCEEE---EecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHH
Confidence 345566655 6788885 67765555442 3567889999988777999999998 8888888766 67999999998
Q ss_pred ccCCCCH
Q 033625 91 VFGAPEP 97 (115)
Q Consensus 91 if~~~d~ 97 (115)
.++.+..
T Consensus 231 a~~nP~l 237 (323)
T COG0042 231 ALGNPWL 237 (323)
T ss_pred HccCCcH
Confidence 8876654
No 249
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.45 E-value=0.094 Score=38.32 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=50.6
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh-hHHHHHHcCCCEEEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-TIAEAASAGANCIVA 87 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~-ni~~l~~~Gad~iv~ 87 (115)
+.+|++..+.+.+ .++|++-+.. .+++.+..+ +-++.+++.. ++||.+-|++... .+..+.++|||.+++
T Consensus 30 ~~~~~~~A~~~~~--~GA~~l~v~~-~~~~~~g~~-----~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 30 DFDPVEIAKAYEK--AGAAAISVLT-EPKYFQGSL-----EDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEe-CccccCCCH-----HHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 4456676677662 4789985543 344433332 3455555543 7888876666555 799999999999999
Q ss_pred cccccC
Q 033625 88 GSSVFG 93 (115)
Q Consensus 88 Gsaif~ 93 (115)
+...+.
T Consensus 101 ~~~~~~ 106 (217)
T cd00331 101 IVAALD 106 (217)
T ss_pred eeccCC
Confidence 977654
No 250
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=95.40 E-value=0.15 Score=41.10 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGP-STIAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G 88 (115)
+..+..+..++ .++|.|.|.. +.|- ..+-.+.+.+-+.++++.. .++||.+||||.- ..+-..+..|||.+.+|
T Consensus 254 ~s~~dA~~a~~--~Gvd~I~Vs~-hGGr-~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iG 329 (381)
T PRK11197 254 LDPEDARDAVR--FGADGIVVSN-HGGR-QLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG 329 (381)
T ss_pred CCHHHHHHHHh--CCCCEEEECC-CCCC-CCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEh
Confidence 44455555551 5899998642 2221 1111344556666665543 4799999999974 45667779999999999
Q ss_pred cccc-C-----CCCHHHHHHHHHHHHH
Q 033625 89 SSVF-G-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 89 saif-~-----~~d~~~~~~~l~~~~~ 109 (115)
+.+. . .+...+.++.|++.++
T Consensus 330 r~~l~~la~~G~~gv~~~l~~l~~El~ 356 (381)
T PRK11197 330 RAFVYALAAAGQAGVANLLDLIEKEMR 356 (381)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 8743 2 2234455555555544
No 251
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.39 E-value=0.13 Score=41.29 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625 50 KVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 50 ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~ 101 (115)
..+++++.. ++|+.+-||| +++.+.++++.| +|.+.+|+++...+|+-+.+
T Consensus 296 ~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 348 (382)
T cd02931 296 YCKALKEVV-DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKI 348 (382)
T ss_pred HHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence 345566553 7899999999 788899988866 99999999999888874443
No 252
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=95.38 E-value=0.14 Score=40.79 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHH--hhC--CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR--NRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAH 99 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~--~~~--~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~ 99 (115)
+++.|+|=.-+. ..-........+|.... +.. .++.++.-+||+ .+.+..+.++|+|.|.+|.++.+++||.+
T Consensus 251 ga~iIGINNRdL--~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~ 328 (338)
T PLN02460 251 GVELIGINNRSL--ETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGK 328 (338)
T ss_pred CCCEEEEeCCCC--CcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHH
Confidence 677776533333 22233344444443311 022 245567778885 69999999999999999999999999999
Q ss_pred HHHHHH
Q 033625 100 VISLMR 105 (115)
Q Consensus 100 ~~~~l~ 105 (115)
.+++|.
T Consensus 329 ~l~~L~ 334 (338)
T PLN02460 329 GIAGLF 334 (338)
T ss_pred HHHHHh
Confidence 988875
No 253
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.37 E-value=0.087 Score=43.62 Aligned_cols=80 Identities=24% Similarity=0.218 Sum_probs=53.7
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeC-------CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHH
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEP-------GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEA 77 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~p-------G~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l 77 (115)
|..|..+...-+- .++|.|-| ++-| +++|... ..+.-+.++++. ..++|+.+||||+ +..+...
T Consensus 275 nv~t~~~a~~l~~---aGad~v~v-gig~gsictt~~~~~~~~--p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~a 348 (479)
T PRK07807 275 NVVTAEGTRDLVE---AGADIVKV-GVGPGAMCTTRMMTGVGR--PQFSAVLECAAAARELGAHVWADGGVRHPRDVALA 348 (479)
T ss_pred ccCCHHHHHHHHH---cCCCEEEE-CccCCcccccccccCCch--hHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 5666666655554 68999864 2334 3444322 244445555442 2379999999996 6788888
Q ss_pred HHcCCCEEEEcccccC
Q 033625 78 ASAGANCIVAGSSVFG 93 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~ 93 (115)
+.+|||.+++|+.+-.
T Consensus 349 l~~ga~~v~~g~~~ag 364 (479)
T PRK07807 349 LAAGASNVMIGSWFAG 364 (479)
T ss_pred HHcCCCeeeccHhhcc
Confidence 8999999999998754
No 254
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=95.36 E-value=0.11 Score=42.66 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=30.0
Q ss_pred CCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc
Q 033625 60 SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 60 ~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif 92 (115)
.+||.+.||| |.+.+......|||.+.+||...
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 5889999999 89999999999999999999743
No 255
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.34 E-value=0.057 Score=44.94 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=47.4
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCC--CCc--c-cchhHHHHHHHHHh--------hCCCCcEEEEcCCCh-hhHHHHHH
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGF--GGQ--K-FMPEMMDKVRSLRN--------RYPSLDIEVDGGLGP-STIAEAAS 79 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~--~gq--~-~~~~~~~ki~~l~~--------~~~~~~i~~dGGI~~-~ni~~l~~ 79 (115)
+..+.++. .++|+|.| +++||. +.+ . .-...+.-+.++++ ...++|+.+||||+. ..+-..+.
T Consensus 296 e~a~~li~--aGAd~I~v-g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla 372 (502)
T PRK07107 296 EGFRYLAE--AGADFVKV-GIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA 372 (502)
T ss_pred HHHHHHHH--cCCCEEEE-CCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH
Confidence 35555551 58999987 888981 111 1 11122223332222 123489999999974 45566678
Q ss_pred cCCCEEEEcccccC
Q 033625 80 AGANCIVAGSSVFG 93 (115)
Q Consensus 80 ~Gad~iv~Gsaif~ 93 (115)
+|||.+-+||.+-.
T Consensus 373 ~GA~~vm~G~~~ag 386 (502)
T PRK07107 373 MGADFIMLGRYFAR 386 (502)
T ss_pred cCCCeeeeChhhhc
Confidence 99999999987644
No 256
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.33 E-value=0.22 Score=39.18 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=46.9
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+.++.+++ .++|+|.+-. .++.. +...+.++++++..|++++.+-.-.+.+....+.++|||++++|
T Consensus 97 ~~~~~l~e--agv~~I~vd~---~~G~~---~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVE--AGVDVIVIDS---AHGHS---VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHh--cCCCEEEEEC---CCCCc---HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 55566663 4788876432 22211 35566788888877778887755567899999999999999984
No 257
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=95.31 E-value=0.044 Score=42.92 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 033625 48 MDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV 100 (115)
Q Consensus 48 ~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~ 100 (115)
++..+++++.. ++||.+.||| +++.+.++++.| +|++.+|++++..+++.+.
T Consensus 279 ~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 279 VPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred HHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 34556666654 7999999999 899999999988 9999999999988887543
No 258
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.31 E-value=0.14 Score=39.16 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=49.8
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc--CCCEEEEccc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGSS 90 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~--Gad~iv~Gsa 90 (115)
+.++.+. ..+..+++=.+.-.-..+-+..+. ++++++. .++|+.+.||++ .+.+..+.+. |...+|+|.+
T Consensus 162 e~~~~~~---~~~~~il~TdI~rDGtl~G~dlel---~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~A 234 (253)
T TIGR02129 162 ETLEELS---KYCDEFLIHAADVEGLCKGIDEEL---VSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSA 234 (253)
T ss_pred HHHHHHH---hhCCEEEEeeecccCccccCCHHH---HHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeeh
Confidence 4445544 347888877776654555555444 4555554 589999999995 6888887554 5666899999
Q ss_pred ccC
Q 033625 91 VFG 93 (115)
Q Consensus 91 if~ 93 (115)
||.
T Consensus 235 lf~ 237 (253)
T TIGR02129 235 LDI 237 (253)
T ss_pred HHH
Confidence 885
No 259
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=95.29 E-value=0.2 Score=40.33 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=53.1
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHHHHHH-Hhh--CCCCcEEEEcCC
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKVRSL-RNR--YPSLDIEVDGGL 69 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~ki~~l-~~~--~~~~~i~~dGGI 69 (115)
.+|+=+.....++.+...... ..+|+|.|-.-.-|.+..+.. ...+.+..+. ++. +..+.+.++||+
T Consensus 205 pVgvKl~~~~~~~~~~~~~~~-ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl 283 (368)
T PF01645_consen 205 PVGVKLVAGRGVEDIAAGAAK-AGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGL 283 (368)
T ss_dssp EEEEEEE-STTHHHHHHHHHH-TT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS-
T ss_pred cEEEEECCCCcHHHHHHhhhh-ccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCc
Confidence 467778888888888775544 689999988777665544321 2222222222 222 346899999998
Q ss_pred C-hhhHHHHHHcCCCEEEEccc
Q 033625 70 G-PSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 70 ~-~~ni~~l~~~Gad~iv~Gsa 90 (115)
. ...+-..+..|||.+.+|++
T Consensus 284 ~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 284 RTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp -SHHHHHHHHHCT-SEEE-SHH
T ss_pred cCHHHHHHHHhcCCCeeEecch
Confidence 4 67888888999999999965
No 260
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.29 E-value=0.11 Score=42.33 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=45.6
Q ss_pred CCCEEEEEeeeCC-CCCcccchhHHHHHHHHHhhC-------CCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc
Q 033625 25 PVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRY-------PSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 25 ~vD~vlvm~v~pG-~~gq~~~~~~~~ki~~l~~~~-------~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif 92 (115)
.+|.|.+- .+.| -.|+.-....+..+.++++.. ..+||.+.||| |.+.+......|||.+.+||...
T Consensus 177 ~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 177 VADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred CCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 37888765 4443 223322233444455544321 25899999999 89999999999999999999743
No 261
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=95.26 E-value=0.071 Score=40.23 Aligned_cols=84 Identities=25% Similarity=0.366 Sum_probs=54.4
Q ss_pred CCHHhHHHhH---hCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 11 TSVEEVYPLV---EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 11 t~~~~~~~~~---~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
++.+.+..++ .+.+.+-..++|++.|=.....-....+.+++++++. +++ .-...=|.| +.++..++.|+.
T Consensus 137 ~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~-~~~LSMGMS-~D~e~AI~~GaT 214 (228)
T COG0325 137 VPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPP-IDELSMGMS-NDYEIAIAEGAT 214 (228)
T ss_pred CCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCeecCcCc-ccHHHHHHcCCC
Confidence 4444444443 2347899999999998544444445566666665442 221 123444654 456777799999
Q ss_pred EEEEcccccCCCC
Q 033625 84 CIVAGSSVFGAPE 96 (115)
Q Consensus 84 ~iv~Gsaif~~~d 96 (115)
.+=+||+||++.+
T Consensus 215 ~VRIGtaiFg~r~ 227 (228)
T COG0325 215 MVRIGTAIFGARD 227 (228)
T ss_pred EEEEcHHhhCCCC
Confidence 9999999998764
No 262
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.25 E-value=0.22 Score=39.81 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=49.9
Q ss_pred HhCCCCCCEEEEEee---eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-------------------ChhhHHHH
Q 033625 20 VEGANPVEMVLVMTV---EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-------------------GPSTIAEA 77 (115)
Q Consensus 20 ~~~~~~vD~vlvm~v---~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-------------------~~~ni~~l 77 (115)
+++ .++|+|-+-+- .|.|.+. ...-.+++++. .++|+.+.||| +++.+..+
T Consensus 244 l~~-~gvd~i~vs~g~~~~~~~~~~-----~~~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~ 316 (361)
T cd04747 244 LVD-AGVDIFHCSTRRFWEPEFEGS-----ELNLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER 316 (361)
T ss_pred HHH-cCCCEEEecCCCccCCCcCcc-----chhHHHHHHHH-cCCCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence 433 46899765331 2222221 12223444544 36899999998 78889998
Q ss_pred HHcC-CCEEEEcccccCCCCHHHHH
Q 033625 78 ASAG-ANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 78 ~~~G-ad~iv~Gsaif~~~d~~~~~ 101 (115)
++.| +|.+.+|+++...+++.+.+
T Consensus 317 l~~g~~D~V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 317 LERGEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred HHCCCCCeehhhHHHHhCcHHHHHH
Confidence 8865 99999999999888765443
No 263
>PRK08185 hypothetical protein; Provisional
Probab=95.24 E-value=0.31 Score=37.85 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--ChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI--~~~ni~~l~~~Gad~i 85 (115)
-|..+..+++.+. -++|++-+ .++++-|.+..-..-.+++|+++++.. ++|++.-||+ ..+.++...+.|+.-+
T Consensus 148 ~t~peea~~f~~~-TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 148 YTDPEQAEDFVSR-TGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCCHHHHHHHHHh-hCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 4667777777732 37999876 333554543111112377888887764 7999999985 5788999999999999
Q ss_pred EEcccccC
Q 033625 86 VAGSSVFG 93 (115)
Q Consensus 86 v~Gsaif~ 93 (115)
=+++.+..
T Consensus 226 Ni~T~l~~ 233 (283)
T PRK08185 226 NISSDMKY 233 (283)
T ss_pred EeChHHHH
Confidence 99988753
No 264
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.18 E-value=0.15 Score=40.18 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625 49 DKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 49 ~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~ 101 (115)
+-++++++.. ++|+.+-|+| +++.+..+++.| +|.+.+|..+...+++-+.+
T Consensus 275 ~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~ 328 (343)
T cd04734 275 PLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKA 328 (343)
T ss_pred HHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHH
Confidence 4455666554 7899999998 779999888765 99999999999888875443
No 265
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.11 E-value=0.15 Score=37.92 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH--cCCCEE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS--AGANCI 85 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~--~Gad~i 85 (115)
...|++..+.|.+ .++|.+-+.=.+-- .|.. ..++.|+++++. .|++++|||+ .+.+..+.. .|||-+
T Consensus 35 ~~dP~~~a~~~~~--~g~~~l~ivDLd~~-~~~~---~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rv 105 (221)
T TIGR00734 35 SSSPDDAAKVIEE--IGARFIYIADLDRI-VGLG---DNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRV 105 (221)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEEcccc-cCCc---chHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEE
Confidence 3577888887762 47899887665542 2333 334556666654 4899999997 455666643 369999
Q ss_pred EEcccccCCCC
Q 033625 86 VAGSSVFGAPE 96 (115)
Q Consensus 86 v~Gsaif~~~d 96 (115)
|+||.-++.++
T Consensus 106 vigT~a~~~p~ 116 (221)
T TIGR00734 106 VVATETLDITE 116 (221)
T ss_pred eecChhhCCHH
Confidence 99999887554
No 266
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=95.10 E-value=0.13 Score=41.07 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=50.9
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhh-HHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPST-IAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~n-i~~l~~~Gad~iv~G 88 (115)
...++.....+ .++|+|.| .+-|-+.-++.+.+++-|.++++.. .+++|.+||||.-.. +-..+..|||.+-+|
T Consensus 234 ~~~~da~~~~~--~G~~~i~v--s~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 234 LSPEDAKRAVD--AGVDGIDV--SNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIG 309 (356)
T ss_dssp -SHHHHHHHHH--TT-SEEEE--ESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEES
T ss_pred ccHHHHHHHHh--cCCCEEEe--cCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEc
Confidence 34445555441 58999875 2334344566677888888888743 479999999997544 777889999999999
Q ss_pred cccc
Q 033625 89 SSVF 92 (115)
Q Consensus 89 saif 92 (115)
..+.
T Consensus 310 r~~l 313 (356)
T PF01070_consen 310 RPFL 313 (356)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 7754
No 267
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.14 Score=40.98 Aligned_cols=73 Identities=15% Similarity=0.312 Sum_probs=54.4
Q ss_pred hHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH-cCCCEEEEccccc
Q 033625 19 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF 92 (115)
Q Consensus 19 ~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~-~Gad~iv~Gsaif 92 (115)
.+++ .+++.+.|=+-.+-..|....+.-++.|+.+++..+++|+.+-|+|. .+.+..+.+ .|+|++-++.++.
T Consensus 163 ~~e~-aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 163 MLED-AGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred HHHh-CCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence 3444 67888765444444455557788899999999988889999999997 555665555 9999999996543
No 268
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.90 E-value=0.24 Score=39.10 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=50.0
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCC-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFG-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN 83 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~-------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad 83 (115)
..+..+.+++ .++|.|. .++.||.. |..+..-.+.-|.++++.. ++||.+||||+ ...+...+.+|||
T Consensus 147 t~e~a~~l~~--aGad~I~-V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd 222 (321)
T TIGR01306 147 TPEAVRELEN--AGADATK-VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGAS 222 (321)
T ss_pred CHHHHHHHHH--cCcCEEE-ECCCCCccccceeeeccCCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCC
Confidence 3444445441 5889986 34556642 1222112344566666554 69999999996 4567777789999
Q ss_pred EEEEcccccC
Q 033625 84 CIVAGSSVFG 93 (115)
Q Consensus 84 ~iv~Gsaif~ 93 (115)
.+-+|+.+-+
T Consensus 223 ~Vmig~~~ag 232 (321)
T TIGR01306 223 MVMIGSLFAG 232 (321)
T ss_pred EEeechhhcC
Confidence 9999976644
No 269
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.87 E-value=0.32 Score=38.15 Aligned_cols=70 Identities=20% Similarity=0.396 Sum_probs=50.2
Q ss_pred CCCCEEEEEeeeCCCC------Ccc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625 24 NPVEMVLVMTVEPGFG------GQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~------gq~---~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.++|.| ++|+++. |.. ..+..++.+.++++..+++|+..-|||. .+.+.++.+ |+|.+-+|++.+.
T Consensus 153 ~G~~~i---tvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 153 KGCQNF---IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred cCCCEE---EEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 578987 4676643 321 1223466788888877789999999995 667777765 9999999999877
Q ss_pred CCCH
Q 033625 94 APEP 97 (115)
Q Consensus 94 ~~d~ 97 (115)
.+.+
T Consensus 229 nP~i 232 (318)
T TIGR00742 229 NPYL 232 (318)
T ss_pred CCHH
Confidence 5543
No 270
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.2 Score=41.14 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=58.3
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA 82 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga 82 (115)
+|-|++....-..-..++.. +++|+|.+-+.+ | -....++-|+.+++.+|++++.+--.+|.+-...|+.+||
T Consensus 242 ~gAaiGTre~dK~rl~ll~~-aGvdvviLDSSq-G-----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGa 314 (503)
T KOG2550|consen 242 CGAAIGTRDDDKERLDLLVQ-AGVDVVILDSSQ-G-----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGA 314 (503)
T ss_pred eeeccccccchhHHHHHhhh-cCCcEEEEecCC-C-----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccC
Confidence 45666655555444445544 789999865432 2 2335567789999999999888888899999999999999
Q ss_pred CEEEEc
Q 033625 83 NCIVAG 88 (115)
Q Consensus 83 d~iv~G 88 (115)
|++=+|
T Consensus 315 DgLrVG 320 (503)
T KOG2550|consen 315 DGLRVG 320 (503)
T ss_pred ceeEec
Confidence 999887
No 271
>PLN02411 12-oxophytodienoate reductase
Probab=94.81 E-value=0.077 Score=42.73 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=42.6
Q ss_pred HHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHH
Q 033625 52 RSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 52 ~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~~ 103 (115)
+++++.. +.|+.+.||++.+...++++.| +|.+.+|+++...+|+.+.+++
T Consensus 306 ~~ik~~v-~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 306 RTLRRAY-QGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred HHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 5555554 6899999999999999999988 9999999999999988665543
No 272
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.75 E-value=0.59 Score=37.61 Aligned_cols=93 Identities=17% Similarity=0.318 Sum_probs=56.6
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa 90 (115)
.+..+...+ .++|.|.|-. + |-...+..+.+++-|.++++. ..++++.+||||.. ..+-..+..|||.+-+|+.
T Consensus 235 ~~dA~~a~~--~Gvd~I~Vsn-h-GGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~ 310 (367)
T PLN02493 235 GEDARIAIQ--AGAAGIIVSN-H-GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 310 (367)
T ss_pred HHHHHHHHH--cCCCEEEECC-C-CCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHH
Confidence 444444441 5899996532 2 222223445567777777654 34699999999974 3455666889999999977
Q ss_pred cc-C-----CCCHHHHHHHHHHHHH
Q 033625 91 VF-G-----APEPAHVISLMRKSVE 109 (115)
Q Consensus 91 if-~-----~~d~~~~~~~l~~~~~ 109 (115)
+. . .+...+.++.|++.++
T Consensus 311 ~l~~l~~~G~~gv~~~l~~l~~el~ 335 (367)
T PLN02493 311 VVFSLAAEGEAGVRKVLQMLRDEFE 335 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 43 2 1233444444554443
No 273
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=94.66 E-value=0.11 Score=41.12 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=51.8
Q ss_pred CCCCEEEEEeeeCCC-CCc-ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625 24 NPVEMVLVMTVEPGF-GGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~-~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
-++|.|.....+.|- .|. .....++..+.++++.+..+|+.+.|||- .+-+.-....|||.+-+||....
T Consensus 146 ~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 146 AGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred CCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 588988766554432 222 22556778899999887449999999995 56677778999999999998543
No 274
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.62 E-value=0.21 Score=41.67 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=53.7
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-C-CChhhHHHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-G-LGPSTIAEAAS 79 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-G-I~~~ni~~l~~ 79 (115)
++|-++++..-.+..+.+++ .++|+|.|- ..+|.+ ...++.|+++++..+. ++.+.+ . .+.+....+.+
T Consensus 233 ~V~~av~~~~~~~ra~~Lv~--aGvd~i~vd-~a~g~~-----~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~ 303 (502)
T PRK07107 233 VVGAGINTRDYAERVPALVE--AGADVLCID-SSEGYS-----EWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAE 303 (502)
T ss_pred eeeeccChhhHHHHHHHHHH--hCCCeEeec-Cccccc-----HHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHH
Confidence 35667777644677777773 489999865 555533 2346778888887652 244444 3 46788999999
Q ss_pred cCCCEEEEc
Q 033625 80 AGANCIVAG 88 (115)
Q Consensus 80 ~Gad~iv~G 88 (115)
+|||++.+|
T Consensus 304 aGAd~I~vg 312 (502)
T PRK07107 304 AGADFVKVG 312 (502)
T ss_pred cCCCEEEEC
Confidence 999999884
No 275
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.56 E-value=0.16 Score=40.07 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 033625 50 KVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV 100 (115)
Q Consensus 50 ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~ 100 (115)
..+++++.. ++||.+.|++ +++.+.++++.| +|++.+|.+++..+++-+.
T Consensus 267 ~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k 318 (353)
T cd02930 267 ATAKLKRAV-DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAK 318 (353)
T ss_pred HHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHH
Confidence 345666653 7999999998 788899988876 9999999999988887443
No 276
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=94.56 E-value=0.27 Score=39.19 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625 49 DKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 49 ~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~ 101 (115)
+..+++++. .++|+.+-||+ +++.+.++++.| +|.+.+|.++...+++-+.+
T Consensus 279 ~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 332 (370)
T cd02929 279 PYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKI 332 (370)
T ss_pred HHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHH
Confidence 334555554 37899999999 588899988877 99999999999888875444
No 277
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.46 E-value=0.16 Score=38.93 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625 59 PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPEPAHVISLMRK 106 (115)
Q Consensus 59 ~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d~~~~~~~l~~ 106 (115)
++++|.-=|||+++|..++ .+.++|++-+|++.++++|+...++.+.+
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~ 249 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK 249 (251)
T ss_pred CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence 5799999999999999985 78999999999999999999888777654
No 278
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=94.36 E-value=0.46 Score=31.01 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=44.0
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH--cCCC
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS--AGAN 83 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~--~Gad 83 (115)
+++..+.+.+.+.+.+ ...|.|.+-+... . ..+...+-++.+++..|+.++. .||.. ..+-.++.+ .|+|
T Consensus 34 ~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~---~--~~~~~~~l~~~~k~~~p~~~iv-~GG~~~t~~~~~~l~~~~~~D 106 (121)
T PF02310_consen 34 LDANVPPEELVEALRA-ERPDVVGISVSMT---P--NLPEAKRLARAIKERNPNIPIV-VGGPHATADPEEILREYPGID 106 (121)
T ss_dssp EESSB-HHHHHHHHHH-TTCSEEEEEESSS---T--HHHHHHHHHHHHHTTCTTSEEE-EEESSSGHHHHHHHHHHHTSE
T ss_pred ECCCCCHHHHHHHHhc-CCCcEEEEEccCc---C--cHHHHHHHHHHHHhcCCCCEEE-EECCchhcChHHHhccCcCcc
Confidence 4455566777776644 5889987643211 1 1233445556666666666555 45544 333344444 7999
Q ss_pred EEEEcc
Q 033625 84 CIVAGS 89 (115)
Q Consensus 84 ~iv~Gs 89 (115)
.++.|-
T Consensus 107 ~vv~Ge 112 (121)
T PF02310_consen 107 YVVRGE 112 (121)
T ss_dssp EEEEET
T ss_pred eecCCC
Confidence 999984
No 279
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.35 E-value=0.097 Score=36.75 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 48 MDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 48 ~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
++.++++++..+ ++++.+.||++ ++++.+....|++.+++|
T Consensus 159 ~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 159 VEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 455666665543 67899999998 788888889999998765
No 280
>PRK14567 triosephosphate isomerase; Provisional
Probab=94.31 E-value=0.22 Score=38.16 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=51.0
Q ss_pred EEEeeeCCC---CCcccchhHHHHHH-HHHhh--------CCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCC
Q 033625 30 LVMTVEPGF---GGQKFMPEMMDKVR-SLRNR--------YPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPE 96 (115)
Q Consensus 30 lvm~v~pG~---~gq~~~~~~~~ki~-~l~~~--------~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d 96 (115)
++++-+|-. +|+...++..+++. .+|+. .++++|.-=|+++++|+.++...+ +|++-+|++..+.++
T Consensus 160 ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~~~~ 239 (253)
T PRK14567 160 VVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAE 239 (253)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhcHHH
Confidence 455667732 45555444444433 23331 246899999999999999998887 999999999887766
Q ss_pred HHHHHHH
Q 033625 97 PAHVISL 103 (115)
Q Consensus 97 ~~~~~~~ 103 (115)
+.+-++.
T Consensus 240 F~~Ii~~ 246 (253)
T PRK14567 240 FNEIINQ 246 (253)
T ss_pred HHHHHHH
Confidence 6655544
No 281
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.02 E-value=1.3 Score=31.19 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=58.1
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
.||.|.+...++ ..+|.|.+-+..-++ ....+.. ++.+|+... ++.+.+=|-|.+++++.+.+.|+|.+
T Consensus 50 ~tp~e~v~aA~~--~dv~vIgvSsl~g~h--~~l~~~l---ve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~i--- 119 (143)
T COG2185 50 QTPEEAVRAAVE--EDVDVIGVSSLDGGH--LTLVPGL---VEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRI--- 119 (143)
T ss_pred CCHHHHHHHHHh--cCCCEEEEEeccchH--HHHHHHH---HHHHHHhCCcceEEeecCccCchhHHHHHHhCccee---
Confidence 466677776652 579999775544432 2223333 455555543 45556666688999999999998864
Q ss_pred ccccCC-CCHHHHHHHHHHHHHH
Q 033625 89 SSVFGA-PEPAHVISLMRKSVED 110 (115)
Q Consensus 89 saif~~-~d~~~~~~~l~~~~~~ 110 (115)
|.. .+..+.+..+++.+.+
T Consensus 120 ---f~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 120 ---FGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred ---eCCCCCHHHHHHHHHHHHHh
Confidence 554 4668888888887766
No 282
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=94.00 E-value=0.52 Score=38.91 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI 101 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~ 101 (115)
.+.+.|+|=..+ ...-.......++| ....| +..+++-+||+ ++.+..+.. |+|.+.+|+++.+++||.+.+
T Consensus 178 ~~a~iiGiNnRd--L~t~~vd~~~~~~l---~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~ 251 (454)
T PRK09427 178 LGAKVIGINNRN--LRDLSIDLNRTREL---APLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAV 251 (454)
T ss_pred CCCCEEEEeCCC--CccceECHHHHHHH---HhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHH
Confidence 477777643332 22223334444343 34443 46667789986 578888865 799999999999999999999
Q ss_pred HHHHH
Q 033625 102 SLMRK 106 (115)
Q Consensus 102 ~~l~~ 106 (115)
++|..
T Consensus 252 ~~L~~ 256 (454)
T PRK09427 252 RKLIL 256 (454)
T ss_pred HHHhc
Confidence 88854
No 283
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.97 E-value=0.24 Score=39.86 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=30.3
Q ss_pred CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC
Q 033625 60 SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 60 ~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.+|+.+||||. ...+...+.+|||.+.+|+.+...
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA 290 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence 48999999995 677888889999999999998753
No 284
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=93.95 E-value=0.12 Score=38.74 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=49.8
Q ss_pred HhHHHhHh-CCCCCCEEEEEeeeCCCCC-cccchhHHHHHHHHHhhC--C-CC---cEEEEcCCChhhHHHHHHcCCCEE
Q 033625 14 EEVYPLVE-GANPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRY--P-SL---DIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 14 ~~~~~~~~-~~~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~l~~~~--~-~~---~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
..+...+. ..+.+.+.++|++.|-... ..-....++++.++++.. . ++ .-.+..|.|.+ +....+.|+..+
T Consensus 141 ~~l~~~i~~~~~~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D-~~~Ai~~GsT~V 219 (227)
T cd06822 141 VELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSAD-FEHAIEMGSTNV 219 (227)
T ss_pred HHHHHHHHhhCCCceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHh-HHHHHHcCCCEE
Confidence 33444442 4478999999988774332 122244566666664421 1 12 24677887877 444556999999
Q ss_pred EEcccccC
Q 033625 86 VAGSSVFG 93 (115)
Q Consensus 86 v~Gsaif~ 93 (115)
=+||+||+
T Consensus 220 RiGt~IFg 227 (227)
T cd06822 220 RVGSAIFG 227 (227)
T ss_pred eCCchhcC
Confidence 99999994
No 285
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.93 E-value=1.4 Score=30.51 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC---CChhhHH----HHHH
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIA----EAAS 79 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG---I~~~ni~----~l~~ 79 (115)
|..++|.+.+-+...+ .++|.|.+-+... +.. +..-+-++++++....-+.++.|| |..+..+ .+.+
T Consensus 35 LG~~v~~e~~v~aa~~-~~adiVglS~l~~----~~~-~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~ 108 (134)
T TIGR01501 35 LGVLSPQEEFIKAAIE-TKADAILVSSLYG----HGE-IDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKE 108 (134)
T ss_pred CCCCCCHHHHHHHHHH-cCCCEEEEecccc----cCH-HHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHH
Confidence 4566776654444433 5899998755442 222 122233455555544334567788 4555554 5889
Q ss_pred cCCCEEEEcccccCC-CCHHHHHHHHHHHH
Q 033625 80 AGANCIVAGSSVFGA-PEPAHVISLMRKSV 108 (115)
Q Consensus 80 ~Gad~iv~Gsaif~~-~d~~~~~~~l~~~~ 108 (115)
+|.|. +|.. ..+.+.+..++..+
T Consensus 109 ~Gv~~------vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 109 MGFDR------VFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred cCCCE------EECcCCCHHHHHHHHHHHh
Confidence 99664 5543 35667777776654
No 286
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.89 E-value=0.81 Score=36.18 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=46.0
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~G 88 (115)
+.+.+++++--.+|+|.+-+.|- .....++.++++++..| .++.+.|+ .+.+....+.++|||.+.+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg------~s~~~~~~i~~i~~~~p-~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHG------HSNSVINMIKHIKTHLP-DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccC------chHHHHHHHHHHHHhCC-CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 55666663211269887543332 23467778888888764 45666663 47888889999999999887
No 287
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=93.85 E-value=1 Score=35.82 Aligned_cols=95 Identities=19% Similarity=0.328 Sum_probs=67.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhh-HHHHHHcCCCEEEEc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPST-IAEAASAGANCIVAG 88 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~n-i~~l~~~Gad~iv~G 88 (115)
|..++...+- .+++-|+| .|-|-..+++.+.+++-+.++-+. ...+|+..|||+...| +-..+..||..+-+|
T Consensus 233 t~eDA~~Ave---~G~~GIIV--SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 233 TGEDARKAVE---AGVAGIIV--SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIG 307 (363)
T ss_pred ccHHHHHHHH---hCCceEEE--eCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEec
Confidence 3445555555 67888765 456666677888888887777554 3469999999998654 555668999999999
Q ss_pred cc-ccC-----CCCHHHHHHHHHHHHHH
Q 033625 89 SS-VFG-----APEPAHVISLMRKSVED 110 (115)
Q Consensus 89 sa-if~-----~~d~~~~~~~l~~~~~~ 110 (115)
+- +|. ..-.++.++-|++.++-
T Consensus 308 RP~v~gLA~~Ge~GV~~vl~iL~~efe~ 335 (363)
T KOG0538|consen 308 RPIVWGLAAKGEAGVKKVLDILRDEFEL 335 (363)
T ss_pred CchheeeccccchhHHHHHHHHHHHHHH
Confidence 76 454 33467777777777653
No 288
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.78 E-value=0.39 Score=39.78 Aligned_cols=77 Identities=30% Similarity=0.427 Sum_probs=47.6
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCC-------CC--cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcC
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGF-------GG--QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG 81 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~-------~g--q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~G 81 (115)
..+..+.+++ .++|+|-| ++-||. +| .+.....++-.+.+++. ++|+.+||||+ ...+...+.+|
T Consensus 276 t~~~~~~l~~--~G~d~i~v-g~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~G 350 (475)
T TIGR01303 276 SAEGVRDLLE--AGANIIKV-GVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAG 350 (475)
T ss_pred CHHHHHHHHH--hCCCEEEE-CCcCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcC
Confidence 3444455551 58999864 234442 22 22222222333333333 79999999996 67788888999
Q ss_pred CCEEEEcccccC
Q 033625 82 ANCIVAGSSVFG 93 (115)
Q Consensus 82 ad~iv~Gsaif~ 93 (115)
||.+.+||.+-.
T Consensus 351 A~~vm~g~~~ag 362 (475)
T TIGR01303 351 ASNVMVGSWFAG 362 (475)
T ss_pred CCEEeechhhcc
Confidence 999999987643
No 289
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=93.63 E-value=0.46 Score=38.00 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred EEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625 30 LVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 30 lvm~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~ 95 (115)
++++-+| |.+|+...+ +..+.|++. .+. .++++|.-=|+++++|+.++ .+.++|++-+|++..+++
T Consensus 170 ~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~ 249 (355)
T PRK14905 170 LFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDAQ 249 (355)
T ss_pred eEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccHH
Confidence 4566677 544565554 344444432 222 23589999999999999986 677899999999998888
Q ss_pred CHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKS 107 (115)
Q Consensus 96 d~~~~~~~l~~~ 107 (115)
++.+-++.+.+.
T Consensus 250 ~f~~Ii~~~~~~ 261 (355)
T PRK14905 250 CFHALIADALKA 261 (355)
T ss_pred HHHHHHHHHHHh
Confidence 887666665543
No 290
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=93.36 E-value=0.26 Score=37.36 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=47.4
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHH-HHcCCCEEE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIV 86 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l-~~~Gad~iv 86 (115)
|.+.++.+++ -++..|| ..+|..--.+.+++++++-+.. ..+.|.+-|||+.+|+..+ ...|+.-+=
T Consensus 130 ~~~ale~li~--~Gv~RIL------TsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 130 PLEALEQLIE--LGVERIL------TSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVH 198 (241)
T ss_pred HHHHHHHHHH--CCCcEEe------cCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhhh
Confidence 6666666662 2566665 3334444567778888876654 3588999999999999998 778877653
No 291
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=93.34 E-value=0.25 Score=37.45 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCH
Q 033625 59 PSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEP 97 (115)
Q Consensus 59 ~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~ 97 (115)
++++|.-=|+|+++|+.++...+ +|++-+|++-.+.+++
T Consensus 198 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f 237 (242)
T cd00311 198 EKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESF 237 (242)
T ss_pred CceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHHHH
Confidence 36899999999999999999998 9999999998765444
No 292
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.97 E-value=0.76 Score=36.82 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=45.5
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCC---------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFG---------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN 83 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~---------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad 83 (115)
+..+.++. .++|.|-| .+-||.- |.+.. ...-...+.++.+ .+||.+||||+ ..++-..+.+|||
T Consensus 161 e~a~~L~~--aGad~vkV-GiGpGsiCtTr~v~GvG~PQ~-tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd 235 (352)
T PF00478_consen 161 EGAKDLID--AGADAVKV-GIGPGSICTTREVTGVGVPQL-TAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAAGAD 235 (352)
T ss_dssp HHHHHHHH--TT-SEEEE-SSSSSTTBHHHHHHSBSCTHH-HHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-S
T ss_pred HHHHHHHH--cCCCEEEE-eccCCcccccccccccCCcHH-HHHHHHHHHhhhc-cCceeecCCcCcccceeeeeeeccc
Confidence 33444442 57999876 4566641 22222 2333334444433 79999999997 5678888899999
Q ss_pred EEEEcccccC
Q 033625 84 CIVAGSSVFG 93 (115)
Q Consensus 84 ~iv~Gsaif~ 93 (115)
.+-+||.+-+
T Consensus 236 ~VMlG~llAg 245 (352)
T PF00478_consen 236 AVMLGSLLAG 245 (352)
T ss_dssp EEEESTTTTT
T ss_pred ceeechhhcc
Confidence 9999987654
No 293
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.91 E-value=0.84 Score=36.47 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=50.2
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCcccc---hhHHHHHHHHHhh--CCCCcEEEEcCCCh-hhHHHHHH
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKFM---PEMMDKVRSLRNR--YPSLDIEVDGGLGP-STIAEAAS 79 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~~---~~~~~ki~~l~~~--~~~~~i~~dGGI~~-~ni~~l~~ 79 (115)
|.-|+.....-+. .++|.|.| ++-||. +++... -..+.-+.+.++. ..++||.+||||+. ..+-.-+.
T Consensus 157 NV~T~e~a~~Li~---aGAD~ikV-giGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA 232 (343)
T TIGR01305 157 NVVTGEMVEELIL---SGADIVKV-GIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG 232 (343)
T ss_pred cccCHHHHHHHHH---cCCCEEEE-cccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH
Confidence 3455555554444 68998754 566763 333221 1233444444432 23689999999974 45666678
Q ss_pred cCCCEEEEccccc
Q 033625 80 AGANCIVAGSSVF 92 (115)
Q Consensus 80 ~Gad~iv~Gsaif 92 (115)
+|||.+-+|+.+-
T Consensus 233 ~GAd~VMlG~llA 245 (343)
T TIGR01305 233 AGADFVMLGGMFA 245 (343)
T ss_pred cCCCEEEECHhhh
Confidence 9999999996554
No 294
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.86 E-value=0.62 Score=35.08 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=54.9
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCE
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC 84 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~ 84 (115)
-|.|+-+..+-+.+.++.+=|+. ..-|.+|.. .....-+.++++|+.-.+.|+.+-=|++ +|+.+++..- ||+
T Consensus 156 aPsTtdeRmell~~~adsFiYvV---SrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDG 231 (268)
T KOG4175|consen 156 APSTTDERMELLVEAADSFIYVV---SRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADG 231 (268)
T ss_pred CCCChHHHHHHHHHhhcceEEEE---EeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccc
Confidence 47888888887774444443432 334555432 2333444466666665688998887775 7888988776 999
Q ss_pred EEEcccccC
Q 033625 85 IVAGSSVFG 93 (115)
Q Consensus 85 iv~Gsaif~ 93 (115)
+|+||.|..
T Consensus 232 VvvGSkiv~ 240 (268)
T KOG4175|consen 232 VVVGSKIVK 240 (268)
T ss_pred eEecHHHHH
Confidence 999999763
No 295
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=92.52 E-value=1.4 Score=32.62 Aligned_cols=86 Identities=9% Similarity=0.150 Sum_probs=54.3
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhH-HHH---HHcC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTI-AEA---ASAG 81 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni-~~l---~~~G 81 (115)
-|.+++|.+.+...+.. ..+|+|.+-+..+. -.+...+-++++++..++++|.+=|..-.+.. ... ...|
T Consensus 121 ~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~-----~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~g 194 (213)
T cd02069 121 DLGVMVPIEKILEAAKE-HKADIIGLSGLLVP-----SLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDG 194 (213)
T ss_pred ECCCCCCHHHHHHHHHH-cCCCEEEEccchhc-----cHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHhhhhccccCC
Confidence 46688999988888855 68999987555442 12344455777777766788887774433333 321 4569
Q ss_pred CCEEEEcccccCCCCHHHHHHHHH
Q 033625 82 ANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 82 ad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
||.. .+|..++++..+
T Consensus 195 ad~y--------~~da~~~v~~~~ 210 (213)
T cd02069 195 PVVY--------VKDASRALGVAN 210 (213)
T ss_pred CceE--------ecCHHHHHHHHH
Confidence 9876 456555555443
No 296
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.46 E-value=0.36 Score=36.07 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=35.7
Q ss_pred EEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHH
Q 033625 63 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP-AHVISLMRK 106 (115)
Q Consensus 63 i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~ 106 (115)
+.+-||||.+|.-..++-||.-+++.|-+|..... .++.+.+.+
T Consensus 85 LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL~RLk~i~s 129 (263)
T KOG3055|consen 85 LQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDLERLKDIVS 129 (263)
T ss_pred eeecCccChHHHHHHHHhcCceEEEEEEeccCCcccHHHHHHHHH
Confidence 88999999999999999999999999999985533 344444443
No 297
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=92.29 E-value=0.24 Score=40.02 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=59.2
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCC--CHHHHHHHHHHHHH
Q 033625 35 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP--EPAHVISLMRKSVE 109 (115)
Q Consensus 35 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~--d~~~~~~~l~~~~~ 109 (115)
.-||++....|-.+.++-.+.++...+++...|||- .++..+++-+|++.+=+.+++...+ ....-+.+|+..++
T Consensus 331 ~GG~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~ 408 (471)
T KOG1799|consen 331 PGGYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMK 408 (471)
T ss_pred CCCccccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHH
Confidence 346788888999999999998887899999999994 5677788888999998888887543 44566666666554
No 298
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.23 E-value=1.5 Score=34.79 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCC-----CcccchhHHHHHHHHHhhCCCCcEEE---EcCCChhhHHHHHHcCCCE
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANC 84 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~-----gq~~~~~~~~ki~~l~~~~~~~~i~~---dGGI~~~ni~~l~~~Gad~ 84 (115)
.+.+...++. -..|.+-+- ++|+.. +.......++.|+.+++.. ++|+.+ -.|.+.+.+..+.++|+|.
T Consensus 137 ~~~~~~~~~~-~~adal~l~-l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~ 213 (352)
T PRK05437 137 VEEAQRAVEM-IEADALQIH-LNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKA 213 (352)
T ss_pred HHHHHHHHHh-cCCCcEEEe-CccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCE
Confidence 5556655533 256777653 344321 1111123456778887764 688886 4569999999999999999
Q ss_pred EEEcc
Q 033625 85 IVAGS 89 (115)
Q Consensus 85 iv~Gs 89 (115)
++++.
T Consensus 214 I~Vsg 218 (352)
T PRK05437 214 IDVAG 218 (352)
T ss_pred EEECC
Confidence 99854
No 299
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.18 E-value=1.1 Score=35.89 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=48.1
Q ss_pred cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCccc---chhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHH
Q 033625 8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKF---MPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAAS 79 (115)
Q Consensus 8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~---~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~ 79 (115)
|..|+. ..++++. .++|.|-| .+-||. +.+.. .-..+.-+.+.++. ..+.||.+||||+ ...+..-+.
T Consensus 158 NV~T~e-~a~~Li~--aGAD~vKV-GIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla 233 (346)
T PRK05096 158 NVVTGE-MVEELIL--SGADIVKV-GIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG 233 (346)
T ss_pred cccCHH-HHHHHHH--cCCCEEEE-cccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH
Confidence 444554 4444441 58997643 567773 22211 11122222222221 2478999999997 446666678
Q ss_pred cCCCEEEEcccccC
Q 033625 80 AGANCIVAGSSVFG 93 (115)
Q Consensus 80 ~Gad~iv~Gsaif~ 93 (115)
+|||.+-+||.+-.
T Consensus 234 aGAd~VMlGsllAG 247 (346)
T PRK05096 234 GGADFVMLGGMLAG 247 (346)
T ss_pred cCCCEEEeChhhcC
Confidence 99999999987644
No 300
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=91.96 E-value=0.59 Score=35.62 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=37.8
Q ss_pred CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCCHHHHHHH
Q 033625 59 PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 59 ~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
++++|.-=|+|+++|+.++ ...++|++-+|++.++.+++.+-++.
T Consensus 202 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii~~ 247 (250)
T PRK00042 202 EKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLAIVKA 247 (250)
T ss_pred CCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeechHHHHHHHHH
Confidence 3588999999999999886 67889999999999887777665543
No 301
>PLN02623 pyruvate kinase
Probab=91.75 E-value=2.1 Score=36.54 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEc--------CCCh-----hhHHH
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDG--------GLGP-----STIAE 76 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~i~~dG--------GI~~-----~ni~~ 76 (115)
.-++.+++++ ..+|.|++..-+-|.. |-.-.+...+++-+.++.. +.|+.+.. .-++ ..+..
T Consensus 330 eaVeNldeIl---~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~-gKpvivaTQMLESMi~~~~PTRAEv~Dva~ 405 (581)
T PLN02623 330 DSIPNLHSII---TASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSM-GKPVIVATNMLESMIVHPTPTRAEVSDIAI 405 (581)
T ss_pred HHHHhHHHHH---HhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHh-CCCEEEECchhhhcccCCCCCchhHHHHHH
Confidence 3457889999 7899998644333211 1122233444433333332 56766544 1244 47888
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
....|+|.+.+++...-..-|.++++.++++..++
T Consensus 406 av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~a 440 (581)
T PLN02623 406 AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 440 (581)
T ss_pred HHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHH
Confidence 88999999999988776789999999999887653
No 302
>PLN02429 triosephosphate isomerase
Probab=91.73 E-value=0.84 Score=36.05 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred EEeeeCCC---CCcccchhHHHHHHHH-Hh---------hCCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCC
Q 033625 31 VMTVEPGF---GGQKFMPEMMDKVRSL-RN---------RYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPE 96 (115)
Q Consensus 31 vm~v~pG~---~gq~~~~~~~~ki~~l-~~---------~~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d 96 (115)
+++-+|-. +|+.-.++..+.+.+. |+ ...+++|.-=|+|+++|+.++ .+.++|++-+|++..+.++
T Consensus 221 vIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~ 300 (315)
T PLN02429 221 VVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPE 300 (315)
T ss_pred EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHHH
Confidence 45666732 5665555554543332 21 124689999999999999886 5789999999999887777
Q ss_pred HHHHHHH
Q 033625 97 PAHVISL 103 (115)
Q Consensus 97 ~~~~~~~ 103 (115)
+.+-++.
T Consensus 301 F~~Ii~~ 307 (315)
T PLN02429 301 FATIVNS 307 (315)
T ss_pred HHHHHHH
Confidence 6655543
No 303
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=91.37 E-value=0.74 Score=33.54 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=37.1
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI 85 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~i 85 (115)
.++|+|= +..||.... .+++.++.+++.. .+++|-+.|||+ .+...++.++|++-|
T Consensus 143 ~GaD~IK---TsTG~~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 143 AGADFIK---TSTGFGPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred hCCCEEE---cCCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 4788884 456665333 3344444444433 468999999998 666777888998865
No 304
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=91.31 E-value=0.8 Score=35.65 Aligned_cols=75 Identities=16% Similarity=0.354 Sum_probs=46.4
Q ss_pred HHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEccccc
Q 033625 16 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVF 92 (115)
Q Consensus 16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~Gsaif 92 (115)
+...+++ .++|.|. ||+-...|.+. +.-++.+.++++.. ++|+.+=|+|+ .+.+..+.+. |+|.+.+|++.+
T Consensus 143 ~~~~l~~-~G~~~i~---vH~Rt~~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 143 FARILED-AGVSAIT---VHGRTRKQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHH-TT--EEE---EECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred HHHHhhh-cccceEE---EecCchhhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence 3334444 4688885 78876666664 56677788888775 49999999995 6677776554 999999998766
Q ss_pred CCC
Q 033625 93 GAP 95 (115)
Q Consensus 93 ~~~ 95 (115)
..+
T Consensus 218 ~nP 220 (309)
T PF01207_consen 218 GNP 220 (309)
T ss_dssp C-C
T ss_pred hcC
Confidence 544
No 305
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.20 E-value=2.1 Score=33.59 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=47.5
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCC-----CcccchhHHHHHHHHHhhCCCCcEEEE---cCCChhhHHHHHHcCCC
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAGAN 83 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~-----gq~~~~~~~~ki~~l~~~~~~~~i~~d---GGI~~~ni~~l~~~Gad 83 (115)
+.+.+...++. -..|++-+ .++|... +.......++.|+++++.. ++|+.+= -|.+.+.+..+.++|+|
T Consensus 128 ~~~~~~~~i~~-~~adalel-~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd 204 (326)
T cd02811 128 GVEEARRAVEM-IEADALAI-HLNPLQEAVQPEGDRDFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVK 204 (326)
T ss_pred CHHHHHHHHHh-cCCCcEEE-eCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCC
Confidence 45555655533 25777765 2344211 2111123446778777764 6888874 34899999999999999
Q ss_pred EEEEcc
Q 033625 84 CIVAGS 89 (115)
Q Consensus 84 ~iv~Gs 89 (115)
.+++++
T Consensus 205 ~I~vsG 210 (326)
T cd02811 205 AIDVAG 210 (326)
T ss_pred EEEECC
Confidence 999854
No 306
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=91.15 E-value=4.9 Score=32.27 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=59.8
Q ss_pred eEEEecCCCC-------H---HhHHHhHhCCCC-CCEEEEEeeeCCCCCcc-cc-h-hHHHHHHHHHhhCCCCcEEEEcC
Q 033625 3 PGVALKPGTS-------V---EEVYPLVEGANP-VEMVLVMTVEPGFGGQK-FM-P-EMMDKVRSLRNRYPSLDIEVDGG 68 (115)
Q Consensus 3 ~Glal~p~t~-------~---~~~~~~~~~~~~-vD~vlvm~v~pG~~gq~-~~-~-~~~~ki~~l~~~~~~~~i~~dGG 68 (115)
+|+=|+|... + ..+.+.|++ .+ +||+-+..-..--.+.. .. + ........++... ..|+.+.|+
T Consensus 219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~-~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-~~pvi~~G~ 296 (363)
T COG1902 219 VGVRLSPDDFFDGGGLTIEEAVELAKALEE-AGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-RIPVIAVGG 296 (363)
T ss_pred EEEEECccccCCCCCCCHHHHHHHHHHHHh-cCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-CCCEEEeCC
Confidence 5666776544 1 233444433 34 79998754322111111 11 1 1112233344332 499999997
Q ss_pred C-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHH
Q 033625 69 L-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 69 I-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~~ 103 (115)
| +++...++++.| ||.+.+|+++...+|+...+++
T Consensus 297 i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~ 333 (363)
T COG1902 297 INDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred CCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHc
Confidence 5 688888999998 9999999999998987655543
No 307
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=91.06 E-value=2.2 Score=32.04 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
...+|.+..+..- +..|.|.+---.-| +..-|..+.+.++..+. .-|+..-|||. +|.+..+...|++.+.++
T Consensus 137 ed~le~Vk~l~~~-~~~~lIvLDi~aVG-t~~G~~~E~l~~~~~~s----~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 137 EDFLETVKDLNYR-RDPGLIVLDIGAVG-TKSGPDYELLTKVLELS----EHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred hhHHHHHHHHhcc-CCCCeEEEEccccc-cccCCCHHHHHHHHHhc----cCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 3444555554411 34555543222223 22236666666655442 46789999997 567777778999999999
Q ss_pred ccccCCCCHHHHH
Q 033625 89 SSVFGAPEPAHVI 101 (115)
Q Consensus 89 saif~~~d~~~~~ 101 (115)
++|++...|.+..
T Consensus 211 Talh~G~vple~~ 223 (229)
T COG1411 211 TALHEGVVPLEVE 223 (229)
T ss_pred hhhhcCcCcHHHH
Confidence 9999987775543
No 308
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=90.70 E-value=1.3 Score=34.03 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=44.7
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--------CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625 36 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--------GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 36 pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--------GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
-|..|.+. ..+.|.++++.+ ++.+++.. ||+++...+++++|+|++-+|--.|..++.-+.+.+
T Consensus 10 vGk~Gr~~---v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~~ 81 (266)
T COG1692 10 VGKPGRKA---VKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFIDN 81 (266)
T ss_pred cCcchHHH---HHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhhc
Confidence 35555553 344566666654 34444443 799999999999999999999889987766554443
No 309
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.59 E-value=4.8 Score=33.97 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=50.4
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSS 90 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsa 90 (115)
++..+.+. + -++--|++-+++-.-+.+-+..+.++. +++. .++|+.+.||+ +++.+.++.. .|||....+|.
T Consensus 441 ~~~~~~~~-~-~Gageil~t~id~DGt~~G~d~~l~~~---v~~~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~ 514 (538)
T PLN02617 441 YELAKAVE-E-LGAGEILLNCIDCDGQGKGFDIELVKL---VSDA-VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGI 514 (538)
T ss_pred HHHHHHHH-h-cCCCEEEEeeccccccccCcCHHHHHH---HHhh-CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEee
Confidence 45555555 1 368889988888765666665555444 4444 47999999998 4788887765 77898777664
Q ss_pred c
Q 033625 91 V 91 (115)
Q Consensus 91 i 91 (115)
.
T Consensus 515 f 515 (538)
T PLN02617 515 F 515 (538)
T ss_pred e
Confidence 3
No 310
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=90.58 E-value=0.96 Score=36.22 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCcEEEEcCCChh------hHHHH---HHcCCCEEEEcccccCCCCHH
Q 033625 60 SLDIEVDGGLGPS------TIAEA---ASAGANCIVAGSSVFGAPEPA 98 (115)
Q Consensus 60 ~~~i~~dGGI~~~------ni~~l---~~~Gad~iv~Gsaif~~~d~~ 98 (115)
..|+.+.||=+.+ .+... .++|+.++++|+.||+.++++
T Consensus 281 ~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 281 RRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAE 328 (348)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHH
Confidence 5899999998842 24456 678999999999999988763
No 311
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.53 E-value=0.74 Score=34.21 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=43.6
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+++.|=+- +.. ++.++-|+++++.+|++.|.++.=++.+.++...++||+++++=
T Consensus 40 Gi~~iEit-----l~~----~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 40 GLPVLEVT-----LRT----PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CCCEEEEe-----cCC----ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 57776442 222 35677788888888888899999999999999999999998764
No 312
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=90.46 E-value=4.3 Score=27.96 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=48.7
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC--Chhh----HHHHHH
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL--GPST----IAEAAS 79 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI--~~~n----i~~l~~ 79 (115)
|..+.|.+.+-+...+ ..+|.|.+-+.... .. +..-+-++++++... ++++.+=|++ ..+. .+.|.+
T Consensus 33 LG~~v~~e~~v~aa~~-~~adiVglS~L~t~----~~-~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~ 106 (128)
T cd02072 33 LGVLSPQEEFIDAAIE-TDADAILVSSLYGH----GE-IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKE 106 (128)
T ss_pred CCCCCCHHHHHHHHHH-cCCCEEEEeccccC----CH-HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHH
Confidence 4456666655444433 58999987544433 11 223333555555543 6666666664 4344 466999
Q ss_pred cCCCEEEEcccccCCC-CHHHHHHHHH
Q 033625 80 AGANCIVAGSSVFGAP-EPAHVISLMR 105 (115)
Q Consensus 80 ~Gad~iv~Gsaif~~~-d~~~~~~~l~ 105 (115)
+|+|. +|... ++.+.+..|+
T Consensus 107 ~Gv~~------vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 107 MGFDR------VFAPGTPPEEAIADLK 127 (128)
T ss_pred cCCCE------EECcCCCHHHHHHHHh
Confidence 99764 46543 5566655554
No 313
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=90.35 E-value=0.88 Score=33.73 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=40.0
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc----EEEEcCCChh-------hHHHHHHcCC--CEEEEccc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPS-------TIAEAASAGA--NCIVAGSS 90 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~----i~~dGGI~~~-------ni~~l~~~Ga--d~iv~Gsa 90 (115)
.++|+|= +..|+. ........+.++++.+.. ++| +.+.||++.+ ...++.++|| -++..|..
T Consensus 158 ~GaD~vK---t~tg~~-~~~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~ 232 (236)
T PF01791_consen 158 LGADFVK---TSTGKP-VGATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRN 232 (236)
T ss_dssp TT-SEEE---EE-SSS-SCSHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHH
T ss_pred hCCCEEE---ecCCcc-ccccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5889996 333322 333334444555554422 355 9999999444 4445669999 88888888
Q ss_pred ccC
Q 033625 91 VFG 93 (115)
Q Consensus 91 if~ 93 (115)
||+
T Consensus 233 i~q 235 (236)
T PF01791_consen 233 IWQ 235 (236)
T ss_dssp HHT
T ss_pred HHc
Confidence 886
No 314
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=90.14 E-value=3.8 Score=35.73 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=56.9
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
+.+.++..+ + .++|+|.|-+...+|..+ .+.. ++.+++... ++++.+-|.+.++....+.++|+|.+
T Consensus 622 ~e~~v~aa~-~-~~a~ivvlcs~d~~~~e~--~~~l---~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~----- 689 (714)
T PRK09426 622 PEEAARQAV-E-NDVHVVGVSSLAAGHKTL--VPAL---IEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAI----- 689 (714)
T ss_pred HHHHHHHHH-H-cCCCEEEEeccchhhHHH--HHHH---HHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEE-----
Confidence 344555555 2 589988776555554432 2333 445555533 46666666668888899999999987
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 033625 91 VFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 91 if~~~d~~~~~~~l~~~~~ 109 (115)
|+-..|..+.+..+++.+.
T Consensus 690 i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 690 FGPGTVIADAAIDLLELLS 708 (714)
T ss_pred ECCCCCHHHHHHHHHHHHH
Confidence 4555688899999888874
No 315
>PRK15492 triosephosphate isomerase; Provisional
Probab=90.12 E-value=1.3 Score=33.93 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=46.8
Q ss_pred EEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625 30 LVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 30 lvm~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~ 95 (115)
++++-+| |.+|....+ +..+.|++. ++. .++++|.-=|+|+++|+.++ ....+|++-+|++=...+
T Consensus 169 iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~~~ 248 (260)
T PRK15492 169 LRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDAD 248 (260)
T ss_pred eEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcCHH
Confidence 4566677 444665544 344445543 322 23689999999999999998 555699999998765544
Q ss_pred CHHHH
Q 033625 96 EPAHV 100 (115)
Q Consensus 96 d~~~~ 100 (115)
+..+-
T Consensus 249 ~F~~I 253 (260)
T PRK15492 249 KFFAI 253 (260)
T ss_pred HHHHH
Confidence 44333
No 316
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=90.08 E-value=1.8 Score=34.09 Aligned_cols=51 Identities=14% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCcEEEEcCCChhh-HHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625 51 VRSLRNRYPSLDIEVDGGLGPST-IAEAASAG-ANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 51 i~~l~~~~~~~~i~~dGGI~~~n-i~~l~~~G-ad~iv~Gsaif~~~d~~~~~~ 102 (115)
.+.+++.. +.|+.+.||++... ..++++.| +|.+.+|+++...+|+.+.++
T Consensus 283 a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~ 335 (341)
T PF00724_consen 283 AEAIKKAV-KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAR 335 (341)
T ss_dssp HHHHHHHH-SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHH
T ss_pred hhhhhhhc-CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHH
Confidence 34445443 68999999998777 66665655 999999999998898765544
No 317
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.06 E-value=1.7 Score=36.04 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=47.7
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+.++.+++ .++|.|.+-+.+- ......+.++++++.+|+.++.+=-=.|.+....+.++|||++-+|
T Consensus 230 ~~a~~Lv~--aGvd~i~~D~a~~------~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLE--AGVDVLVVDTAHG------HQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHH--hCCCEEEEeccCC------ccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence 55666662 4799976544332 1345677788999888887766633348899999999999999844
No 318
>PTZ00333 triosephosphate isomerase; Provisional
Probab=89.99 E-value=2.2 Score=32.65 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=47.5
Q ss_pred EEEeeeCCC---CCcccchhHHHH-HHHHHh----h-----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625 30 LVMTVEPGF---GGQKFMPEMMDK-VRSLRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 30 lvm~v~pG~---~gq~~~~~~~~k-i~~l~~----~-----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~ 95 (115)
++++-+|-. +|+...++..+. .+.+|+ . ..+.+|.-=|+|+++|+.++ ...++|++-+|++..+ +
T Consensus 164 iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~ 242 (255)
T PTZ00333 164 IVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-P 242 (255)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-h
Confidence 355667732 566555554443 223333 1 23589999999999999875 6788999999999876 3
Q ss_pred CHHHHH
Q 033625 96 EPAHVI 101 (115)
Q Consensus 96 d~~~~~ 101 (115)
++.+-+
T Consensus 243 ~f~~Ii 248 (255)
T PTZ00333 243 DFVDII 248 (255)
T ss_pred hHHHHH
Confidence 554443
No 319
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=89.81 E-value=5.1 Score=29.04 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=47.3
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcCCChhhHHHHHHcCCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
-|.+++|.+.+...+.. ..+|+|.+-+..+. -.+...+-++++++..+ +++|.+=|..=.+ ......|||
T Consensus 115 ~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~--~~~~~~GaD 186 (201)
T cd02070 115 DLGRDVPPEEFVEAVKE-HKPDILGLSALMTT-----TMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ--EFADEIGAD 186 (201)
T ss_pred ECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH--HHHHHcCCc
Confidence 46788999888887754 68999876544332 12345555777777755 6777777743322 244567999
Q ss_pred EEE
Q 033625 84 CIV 86 (115)
Q Consensus 84 ~iv 86 (115)
..+
T Consensus 187 ~~~ 189 (201)
T cd02070 187 GYA 189 (201)
T ss_pred EEE
Confidence 873
No 320
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=89.23 E-value=2.5 Score=33.47 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=49.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCC-Cc--cc--chhHHHHHHHHH--hhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQ--KF--MPEMMDKVRSLR--NRYPSLDIEVDGGLG-PSTIAEAASAGA 82 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq--~~--~~~~~~ki~~l~--~~~~~~~i~~dGGI~-~~ni~~l~~~Ga 82 (115)
++++.....+ + .++|.|.+-..+-|-. |. .| .+...+.+..-. ....++|+.+.|||. ...+......||
T Consensus 111 ~s~~~A~~a~-~-~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA 188 (320)
T cd04743 111 PSPGLLKQFL-E-NGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAA 188 (320)
T ss_pred CCHHHHHHHH-H-cCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCC
Confidence 4444444444 2 6899998887777532 31 11 122222221100 011269999999994 555667777877
Q ss_pred --------CEEEEcccc-cCCCC
Q 033625 83 --------NCIVAGSSV-FGAPE 96 (115)
Q Consensus 83 --------d~iv~Gsai-f~~~d 96 (115)
+.+.+|+.. +..+.
T Consensus 189 ~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 189 PLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred cccccccccEEEEccHHhcchhh
Confidence 799999884 44443
No 321
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=88.95 E-value=1 Score=33.42 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI 85 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~i 85 (115)
.++|||= ...||.+..- +.+.++.+++.. .+++|-+.|||+ .+....+.++|++.+
T Consensus 144 aGADfvK---TsTGf~~~ga---t~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 144 AGADFVK---TSTGFGAGGA---TVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred hCCCEEE---eCCCCCCCCC---CHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 5899985 5567754333 334444444432 369999999998 666778899999876
No 322
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=88.88 E-value=7.4 Score=28.46 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=46.5
Q ss_pred CCCEEEEEeee---CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhH-HHHHHcCCCEEEEcccccCCCCHHH
Q 033625 25 PVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTI-AEAASAGANCIVAGSSVFGAPEPAH 99 (115)
Q Consensus 25 ~vD~vlvm~v~---pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni-~~l~~~Gad~iv~Gsaif~~~d~~~ 99 (115)
..|.+++.-.. ||. ..++-++++++.+|++++.+--+-. ...+ ..+.++||+.+ |.+..++.+
T Consensus 37 ~pd~vl~dl~d~~mp~~-------~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gy-----l~K~~~~~e 104 (207)
T PRK11475 37 SFSAVIFSLSAMRSERR-------EGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGV-----LSKASTLEI 104 (207)
T ss_pred CCCEEEeeccccCCCCC-------CHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEE-----EecCCCHHH
Confidence 56888743333 543 3567788888888888877665433 4333 34557999987 445566666
Q ss_pred HHHHHHHHHH
Q 033625 100 VISLMRKSVE 109 (115)
Q Consensus 100 ~~~~l~~~~~ 109 (115)
-+..++..+.
T Consensus 105 L~~aI~~v~~ 114 (207)
T PRK11475 105 LQQELFLSLN 114 (207)
T ss_pred HHHHHHHHHC
Confidence 6666666544
No 323
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=88.87 E-value=4.2 Score=33.21 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCCCEEEEEeeeCCCCCc-ccchhH-HHHHHHHHhh----CCCCcEEEEcCCChhhHHHH-HHcC-CCEEEE-cccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQ-KFMPEM-MDKVRSLRNR----YPSLDIEVDGGLGPSTIAEA-ASAG-ANCIVA-GSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq-~~~~~~-~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l-~~~G-ad~iv~-Gsaif~~ 94 (115)
.++|.+.+ |++.|. .+..+. ..-.+.+++- .+..-=+..||+++..++.+ ...| .|++.. |.+|+..
T Consensus 293 aGaD~~~~----~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gH 368 (406)
T cd08207 293 AGVDHLHV----NGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAH 368 (406)
T ss_pred cCCCcccc----CCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecC
Confidence 58898854 444443 232222 2223333331 12234578999999999975 7788 688877 7889986
Q ss_pred -CCHHHHHHHHHHHHHHH
Q 033625 95 -PEPAHVISLMRKSVEDA 111 (115)
Q Consensus 95 -~d~~~~~~~l~~~~~~~ 111 (115)
+.+++-++.+|+.++.+
T Consensus 369 P~G~~aGa~A~rqA~ea~ 386 (406)
T cd08207 369 PDGPAAGVRSLRQAWEAA 386 (406)
T ss_pred CCCchhHHHHHHHHHHHH
Confidence 46888899999887754
No 324
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=88.61 E-value=3.3 Score=31.47 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=56.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCH----
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP---- 97 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~---- 97 (115)
.++|.+++-+.... ++.-|.....+.+.+.-+. ..++.+...|.++.+.++.|...++|++=+=+++....|-
T Consensus 143 aG~~gvMlDTa~Kd-g~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~ 221 (235)
T PF04476_consen 143 AGFDGVMLDTADKD-GGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGR 221 (235)
T ss_pred cCCCEEEEecccCC-CCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccc
Confidence 47899988777654 2333333333333333222 1368899999999999999999999999888888765321
Q ss_pred --HHHHHHHHHHH
Q 033625 98 --AHVISLMRKSV 108 (115)
Q Consensus 98 --~~~~~~l~~~~ 108 (115)
.+.+++|++.+
T Consensus 222 id~~~V~~lr~~~ 234 (235)
T PF04476_consen 222 IDPELVAALRALM 234 (235)
T ss_pred cCHHHHHHHHHhc
Confidence 35666676654
No 325
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=88.43 E-value=0.76 Score=35.25 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCCcEEEE--------cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625 48 MDKVRSLRNRYPSLDIEVD--------GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL 103 (115)
Q Consensus 48 ~~ki~~l~~~~~~~~i~~d--------GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~ 103 (115)
.+.|.+|++.+ ++.+++. =||++++..+|.++|+|++-+|--+|...+..+.+.+
T Consensus 16 ~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~ 78 (253)
T PF13277_consen 16 KEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDK 78 (253)
T ss_dssp HHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH
T ss_pred HHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhc
Confidence 34466666653 4554443 2799999999999999999999999998887766655
No 326
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.26 E-value=4.9 Score=32.30 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=40.8
Q ss_pred CHHhHHHhHhCCCCCCEEEEEee--eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v--~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
..+..+.++ + .++|+|.+-.. ...|.+..-. ...+.++.+.. ++|+.+=+-.+.+....+.++|||++.+|
T Consensus 143 ~~e~a~~l~-e-aGvd~I~vhgrt~~~~h~~~~~~---~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 143 AQELAPTVV-E-AGVDLFVIQGTVVSAEHVSKEGE---PLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHH-H-CCCCEEEEeccchhhhccCCcCC---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 344455544 2 58999964221 1222222111 12233333332 68887733456788888999999999998
No 327
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=88.17 E-value=2 Score=30.58 Aligned_cols=77 Identities=25% Similarity=0.184 Sum_probs=45.6
Q ss_pred ceEEEecCCCCH---HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh---hHH
Q 033625 2 RPGVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS---TIA 75 (115)
Q Consensus 2 k~Glal~p~t~~---~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~---ni~ 75 (115)
+.=+||...++- +.++.+. +.+|++=+ |... +....++-++++++..+++++.+++=+... .++
T Consensus 2 ~~~~a~d~~~~~~~~~~~~~l~---~~i~~iei-----g~~~--~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~ 71 (202)
T cd04726 2 LLQVALDLLDLEEALELAKKVP---DGVDIIEA-----GTPL--IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAE 71 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHhh---hcCCEEEc-----CCHH--HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHH
Confidence 445677644444 3333333 34666533 3211 234456678888877667777766554432 357
Q ss_pred HHHHcCCCEEEEc
Q 033625 76 EAASAGANCIVAG 88 (115)
Q Consensus 76 ~l~~~Gad~iv~G 88 (115)
.+.++|+|++++-
T Consensus 72 ~~~~aGad~i~~h 84 (202)
T cd04726 72 MAFKAGADIVTVL 84 (202)
T ss_pred HHHhcCCCEEEEE
Confidence 7899999999764
No 328
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=88.05 E-value=1.4 Score=32.58 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=44.0
Q ss_pred EEeeeCCC---CCcccchhHHHHHHHHH----hhCCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCC
Q 033625 31 VMTVEPGF---GGQKFMPEMMDKVRSLR----NRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGA 94 (115)
Q Consensus 31 vm~v~pG~---~gq~~~~~~~~ki~~l~----~~~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~ 94 (115)
+++-+|-. +|..-.++-.+.+.+.- +..++++|.-=|+|+++|..++ .+.++|++-+|++..++
T Consensus 133 vIAYEPvWAIGtG~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 133 VVAVEPPELIGTGIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred EEEECCHHHhCCCCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 45666721 45554444444433332 2234689999999999999986 67889999999987653
No 329
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=88.04 E-value=2.8 Score=35.52 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=64.7
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeee--------------CCCCCcccchhHHHHHHHHHhh--CCCCcEEE
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE--------------PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV 65 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~--------------pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~ 65 (115)
.+|+.+-...-+..++.++ ..+|++.+.+-+ -|+-++.+.|..+..|+++.+. ..++|+.+
T Consensus 424 ~vg~mIEtpaav~~~d~ia---~~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~v 500 (565)
T TIGR01417 424 EVGVMIEIPSAALIADHLA---KEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGM 500 (565)
T ss_pred EEEEEEcCHHHHHhHHHHH---hhCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3566666666667888888 789999887632 3445678888888888877543 24688888
Q ss_pred Ec--CCChhhHHHHHHcCCCEEEEccc
Q 033625 66 DG--GLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 66 dG--GI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
-| .-+++-++.+...|.+.+.+++.
T Consensus 501 CGe~a~~p~~~~~l~~~G~~~lsv~~~ 527 (565)
T TIGR01417 501 CGEMAGDERAIPLLLGLGLRELSMSAS 527 (565)
T ss_pred eCCcCCCHHHHHHHHHCCCCEEEEChH
Confidence 66 34789999999999999999954
No 330
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=88.03 E-value=2.3 Score=37.43 Aligned_cols=85 Identities=6% Similarity=-0.072 Sum_probs=60.7
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC--------------CCCcccchhHHHHHHHHHhh--CCCCcEEEE
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--------------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVD 66 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG--------------~~gq~~~~~~~~ki~~l~~~--~~~~~i~~d 66 (115)
+|+.+-...-+..+++++ ..+|++.|.+-+-. .-++...|..++.|+++.+. ..++++.+.
T Consensus 672 vg~MIEtp~av~~~deIa---~~vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgic 748 (795)
T PRK06464 672 VIMMCEIPSNALLAEEFL---EYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGIC 748 (795)
T ss_pred EEEEEcCHHHHHHHHHHH---HhCCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 556665555667888888 77999988764322 12455567777777766443 236888887
Q ss_pred c---CCChhhHHHHHHcCCCEEEEccc
Q 033625 67 G---GLGPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 67 G---GI~~~ni~~l~~~Gad~iv~Gsa 90 (115)
| |-+++.++.+.+.|++.+.+++.
T Consensus 749 ge~a~~~p~~~~~l~~~G~~~ls~~~d 775 (795)
T PRK06464 749 GQAPSDHPDFAEWLVEEGIDSISLNPD 775 (795)
T ss_pred CCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence 6 43489999999999999999864
No 331
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=87.89 E-value=2.4 Score=33.57 Aligned_cols=72 Identities=25% Similarity=0.460 Sum_probs=49.6
Q ss_pred ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625 7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG 70 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~ 70 (115)
++|...-|.+.+...| ..++|+|+ |.|+.. -++-|+++++..|++|+.+ -|=++
T Consensus 219 mdp~n~~eAlre~~~D~~EGAD~lM---VKPal~-------YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 219 LPPGARGLALRAVERDVSEGADMIM---VKPGTP-------YLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred CCCcCHHHHHHHHHhhHHhCCCEEE---EcCCch-------HHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 4566666777666555 25899997 788743 4566888888877788764 23344
Q ss_pred -----hhhHHHHHHcCCCEEEEc
Q 033625 71 -----PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 71 -----~~ni~~l~~~Gad~iv~G 88 (115)
.|.+-.++.+|||+|+.=
T Consensus 289 e~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 289 LKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred HHHHHHHHHHHHHhcCCCEEEee
Confidence 455666889999998754
No 332
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.87 E-value=9.5 Score=29.32 Aligned_cols=78 Identities=13% Similarity=0.239 Sum_probs=52.1
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
-++.+++++.. +++|.+.+.+-+ -|+.+|...|+..+.++++.+.. .+++..+- .-+++....+.+.|++.+
T Consensus 157 a~~n~~~I~~~-~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~-~~~~~~a~~~~~~G~~~v 234 (267)
T PRK10128 157 ALDNLDEILDV-EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL-AVDPDMAQKCLAWGANFV 234 (267)
T ss_pred HHHhHHHHhCC-CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc-CCCHHHHHHHHHcCCcEE
Confidence 34778887743 789999987642 35566655565555555553321 24555432 347899999999999999
Q ss_pred EEcccc
Q 033625 86 VAGSSV 91 (115)
Q Consensus 86 v~Gsai 91 (115)
++|+..
T Consensus 235 ~~g~D~ 240 (267)
T PRK10128 235 AVGVDT 240 (267)
T ss_pred EEChHH
Confidence 999753
No 333
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=87.69 E-value=3.9 Score=30.21 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=37.2
Q ss_pred CCcEEEEcCCChhhHHHHHHcCCCEEEEccccc----CCCCHHHHHHHHHH
Q 033625 60 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF----GAPEPAHVISLMRK 106 (115)
Q Consensus 60 ~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif----~~~d~~~~~~~l~~ 106 (115)
+..|.+.|=-|++.+.+...+|+|.+-+.-.++ ..+-..+.++.+.+
T Consensus 157 ~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~ 207 (211)
T cd00956 157 DTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE 207 (211)
T ss_pred CceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence 577999999999999999999999999996655 44445666666554
No 334
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.59 E-value=4.4 Score=35.32 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCH
Q 033625 52 RSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEP 97 (115)
Q Consensus 52 ~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~ 97 (115)
+++++.. ++|+.+-|+| +++.+.++++.| +|.+.+|+.+...++.
T Consensus 680 ~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 680 DRIRNEA-GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred HHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 4555543 6899999999 678899887755 9999999999988876
No 335
>PRK08508 biotin synthase; Provisional
Probab=87.43 E-value=2.5 Score=32.36 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc----ccccC----CC
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG----SSVFG----AP 95 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G----saif~----~~ 95 (115)
++.-+.+....+++.. ...+...+-++.+++..+++.+. -.|=.+.+.+..|+++|+|.+-.+ ..+|. ..
T Consensus 56 g~~~~~lv~sg~~~~~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~ 134 (279)
T PRK08508 56 GALGFCLVTSGRGLDD-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTH 134 (279)
T ss_pred CCCEEEEEeccCCCCc-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCC
Confidence 5666655443444332 23345555666777666677654 568889999999999999999865 22453 23
Q ss_pred CHHHHHHHHHH
Q 033625 96 EPAHVISLMRK 106 (115)
Q Consensus 96 d~~~~~~~l~~ 106 (115)
++.+.++.++.
T Consensus 135 ~~~~~l~~i~~ 145 (279)
T PRK08508 135 TWEERFQTCEN 145 (279)
T ss_pred CHHHHHHHHHH
Confidence 45555555443
No 336
>PRK02227 hypothetical protein; Provisional
Probab=87.39 E-value=4.7 Score=30.72 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=60.1
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif 92 (115)
.+-++..+ .++|.+|+-+-... ++.-|.....+.+++..+. ..+......|.++.+.++.|...++|++=+=+++.
T Consensus 135 ~l~~~a~~-aGf~g~MlDTa~Kd-g~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC 212 (238)
T PRK02227 135 SLPAIAAD-AGFDGAMLDTAIKD-GKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPALKRLGPDILGVRGAVC 212 (238)
T ss_pred HHHHHHHH-cCCCEEEEecccCC-CcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHHHhcCCCEEEechhcc
Confidence 34444433 57888887665543 2233333333333333222 12688999999999999999999999998878888
Q ss_pred CCCCH-----HHHHHHHHHHHHH
Q 033625 93 GAPEP-----AHVISLMRKSVED 110 (115)
Q Consensus 93 ~~~d~-----~~~~~~l~~~~~~ 110 (115)
...|- .+.+.+|++.+..
T Consensus 213 ~g~dR~~~id~~~V~~~~~~l~~ 235 (238)
T PRK02227 213 GGGDRTGRIDPELVAELREALRA 235 (238)
T ss_pred CCCCcccccCHHHHHHHHHHhhc
Confidence 54421 3566666666543
No 337
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.25 E-value=7 Score=31.34 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCc-ccc--hhHHHHHHHHHhhCCCCcEEEEcCC---------------
Q 033625 10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQ-KFM--PEMMDKVRSLRNRYPSLDIEVDGGL--------------- 69 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq-~~~--~~~~~ki~~l~~~~~~~~i~~dGGI--------------- 69 (115)
-|..+...++++. -++|++= +.++|--|.+. +.. .--+++++++++..+++|++.=||=
T Consensus 172 ~T~PeeA~~Fv~~-TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~ 250 (347)
T PRK09196 172 LTDPEEAADFVKK-TQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGG 250 (347)
T ss_pred CCCHHHHHHHHHH-hCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcC
Confidence 5778888888854 4789763 23344444431 111 1356788888887667999999976
Q ss_pred --------ChhhHHHHHHcCCCEEEEccccc
Q 033625 70 --------GPSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 70 --------~~~ni~~l~~~Gad~iv~Gsaif 92 (115)
..+.+++..+.|+.-|=+++.+.
T Consensus 251 ~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~ 281 (347)
T PRK09196 251 DMPETYGVPVEEIQEGIKHGVRKVNIDTDLR 281 (347)
T ss_pred CccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence 66999999999999999998774
No 338
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=86.84 E-value=10 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcccccC
Q 033625 52 RSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 52 ~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
++++..+|+.|+.+-.+-+. -++.+|.+.|++.++.|..+++
T Consensus 203 ~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 203 RRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred HHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 33333345667765443222 2688999999999999987764
No 339
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=86.30 E-value=3.3 Score=34.62 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=56.8
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHH-HHHHHhh--CCCCcEEEEcCC
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDK-VRSLRNR--YPSLDIEVDGGL 69 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~k-i~~l~~~--~~~~~i~~dGGI 69 (115)
++++=|....+++.+...... ..+|+|+|-.-.-|.+-.++. +..+.. -+.|+.. +..+.+.+|||+
T Consensus 305 ~I~VKlva~~~v~~iaagvak-A~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl 383 (485)
T COG0069 305 KISVKLVAEHGVGTIAAGVAK-AGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGL 383 (485)
T ss_pred eEEEEEecccchHHHHhhhhh-ccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCc
Confidence 466777788888888875533 589999886555554322211 112222 2223332 346889999998
Q ss_pred C-hhhHHHHHHcCCCEEEEccc
Q 033625 70 G-PSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 70 ~-~~ni~~l~~~Gad~iv~Gsa 90 (115)
. ...+...+..|||.|-.|++
T Consensus 384 ~Tg~DVaka~aLGAd~v~~gTa 405 (485)
T COG0069 384 RTGADVAKAAALGADAVGFGTA 405 (485)
T ss_pred cCHHHHHHHHHhCcchhhhchH
Confidence 5 56777788999999987754
No 340
>PLN02428 lipoic acid synthase
Probab=86.18 E-value=5.2 Score=32.05 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=45.0
Q ss_pred HhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhhCCCCcEEEE--cC-CChhhHHHHHHcCCCEEE
Q 033625 14 EEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--GG-LGPSTIAEAASAGANCIV 86 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d--GG-I~~~ni~~l~~~Gad~iv 86 (115)
+..+.+. + .+++++.+.++. |.. | .....+.++++++..|++.+.+- +. .+.+.+..+.++|.|.+-
T Consensus 137 ~vA~~v~-~-~Glk~vvltSg~rddl~D~-g---a~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~ 210 (349)
T PLN02428 137 NVAEAIA-S-WGVDYVVLTSVDRDDLPDG-G---SGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFA 210 (349)
T ss_pred HHHHHHH-H-cCCCEEEEEEcCCCCCCcc-c---HHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEc
Confidence 4444444 1 378999888874 321 1 12344456777777777666663 33 389999999999999976
Q ss_pred Ec
Q 033625 87 AG 88 (115)
Q Consensus 87 ~G 88 (115)
.+
T Consensus 211 hn 212 (349)
T PLN02428 211 HN 212 (349)
T ss_pred cC
Confidence 55
No 341
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=86.18 E-value=3.9 Score=30.55 Aligned_cols=59 Identities=19% Similarity=0.364 Sum_probs=42.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G 88 (115)
.++|||- ...||.... .+++-++.+++.. .+++|-+.|||+ .+....+.++||+.+=..
T Consensus 148 agadfIK---TsTG~~~~g---at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 148 AGADFVK---TSTGFSTGG---ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred hCCCEEE---cCCCCCCCC---CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 5799774 677874222 4455566666553 469999999995 678889999999988443
No 342
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.14 E-value=8.5 Score=30.09 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=49.0
Q ss_pred EEEecCCCCHH--hHHHhHhCCCCCCEEEEEe----eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE--cCCC--hhh
Q 033625 4 GVALKPGTSVE--EVYPLVEGANPVEMVLVMT----VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--GGLG--PST 73 (115)
Q Consensus 4 Glal~p~t~~~--~~~~~~~~~~~vD~vlvm~----v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d--GGI~--~~n 73 (115)
.+-++..++.+ .+...+++ .++|++-+=. ..+++.|........+.++++++.. ++|+.+= ++++ .+.
T Consensus 105 i~sI~g~~~~e~~~~a~~~~~-agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~ 182 (334)
T PRK07565 105 IASLNGSSAGGWVDYARQIEQ-AGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANM 182 (334)
T ss_pred EEEeccCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHH
Confidence 44555556554 23333333 3689998722 2233333333233456677777653 5777765 3332 355
Q ss_pred HHHHHHcCCCEEEEccccc
Q 033625 74 IAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 74 i~~l~~~Gad~iv~Gsaif 92 (115)
.+.+.++|+|.+++.....
T Consensus 183 a~~l~~~G~dgI~~~n~~~ 201 (334)
T PRK07565 183 AKRLDAAGADGLVLFNRFY 201 (334)
T ss_pred HHHHHHcCCCeEEEECCcC
Confidence 5667899999998875443
No 343
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.10 E-value=7 Score=29.83 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=50.0
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCcccc-------------hhHHHHHHHHHhhCCCCcEEEEcCCCh----
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFM-------------PEMMDKVRSLRNRYPSLDIEVDGGLGP---- 71 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~-------------~~~~~ki~~l~~~~~~~~i~~dGGI~~---- 71 (115)
|.++.+..+.+ .++|+|=+.- .+|=.+|--.+ ...++.++++|+..+++|+.+-+=.|+
T Consensus 27 ~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~ 104 (258)
T PRK13111 27 TSLEIIKALVE--AGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY 104 (258)
T ss_pred HHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc
Confidence 44455555552 5899987643 23444553222 245777788875556889888884443
Q ss_pred ---hhHHHHHHcCCCEEEEc
Q 033625 72 ---STIAEAASAGANCIVAG 88 (115)
Q Consensus 72 ---~ni~~l~~~Gad~iv~G 88 (115)
+-+..+.++|+|++++-
T Consensus 105 G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC
Confidence 45788999999999885
No 344
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.01 E-value=6.6 Score=28.51 Aligned_cols=73 Identities=19% Similarity=0.088 Sum_probs=45.6
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGAN 83 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad 83 (115)
-|.+++|.+.+.+.+.+ ..+|+|.+-...+- -.+...+-++++++.. ++++|.+=|..- |-....+.|||
T Consensus 117 ~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~-----~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 117 DLGRDVPIDTVVEKVKK-EKPLMLTGSALMTT-----TMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred ECCCCCCHHHHHHHHHH-cCCCEEEEcccccc-----CHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 36789999988888855 68999987544332 1233445567777763 345555554332 32344677999
Q ss_pred EEE
Q 033625 84 CIV 86 (115)
Q Consensus 84 ~iv 86 (115)
...
T Consensus 189 ~~~ 191 (197)
T TIGR02370 189 VYG 191 (197)
T ss_pred EEe
Confidence 874
No 345
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=85.87 E-value=9.1 Score=30.85 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=44.6
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEe--eeCCC-CCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMT--VEPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA 82 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~--v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga 82 (115)
-++|....+..+.++ + .++|.|.+-+ +...| ++.. . ...+.++.+.. ++|+.+-+-.+.+....+.++|+
T Consensus 138 Rl~~~~~~e~a~~l~-e-AGad~I~ihgrt~~q~~~sg~~-~---p~~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGa 210 (369)
T TIGR01304 138 RVSPQNAREIAPIVV-K-AGADLLVIQGTLVSAEHVSTSG-E---PLNLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGA 210 (369)
T ss_pred ecCCcCHHHHHHHHH-H-CCCCEEEEeccchhhhccCCCC-C---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCC
Confidence 334444444445544 3 5899986532 11222 2211 1 22345554443 68888744557788888999999
Q ss_pred CEEEEcc
Q 033625 83 NCIVAGS 89 (115)
Q Consensus 83 d~iv~Gs 89 (115)
|.++.|.
T Consensus 211 DgV~~G~ 217 (369)
T TIGR01304 211 AGVIVGP 217 (369)
T ss_pred CEEEECC
Confidence 9998773
No 346
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=85.65 E-value=5.8 Score=31.72 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+.+.|+++++.. +.|+.+=|-.+++....+.++|+|.|++.
T Consensus 209 ~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 209 SPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred CHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 556778888764 68999999889999999999999999983
No 347
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=85.55 E-value=15 Score=29.78 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=53.9
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.+++.+ ...|+|+ +-+--++.|.+.-.....+.++.+.+ ++|+.+..|--..+..++.+.|.+.+... .=..
T Consensus 276 ~l~~~l---~~ADlVI--TGEG~~D~Qtl~GK~p~~Va~~A~~~-~vPviai~G~v~~~~~~~~~~g~~a~~~i--~~~~ 347 (375)
T TIGR00045 276 DLEQKI---KDADLVI--TGEGRLDRQSLMGKAPVGVAKRAKKY-GVPVIAIAGSLGDGVDVLPQHGIDAAFSI--LPSP 347 (375)
T ss_pred CHHHHh---cCCCEEE--ECCCcccccccCCchHHHHHHHHHHh-CCeEEEEecccCCChHHHHhcCccEEEEc--CCCC
Confidence 456677 7789664 45555788888766666666665553 68877777766677788888887654321 1123
Q ss_pred CCHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVE 109 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~ 109 (115)
.+..+++++-.+.++
T Consensus 348 ~~l~~a~~~~~~~l~ 362 (375)
T TIGR00045 348 MPLEDALQNASTNLE 362 (375)
T ss_pred CCHHHHHHHHHHHHH
Confidence 355555544333333
No 348
>PRK01362 putative translaldolase; Provisional
Probab=85.51 E-value=7.4 Score=28.97 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=51.9
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc----CCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF----GAP 95 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif----~~~ 95 (115)
.++|||-.. -|--. +...+.++.++++++. ..+..|.+..=-+.+++.++..+|+|.+-+.-.+| +.+
T Consensus 121 aGa~yispy---vgRi~-d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p 196 (214)
T PRK01362 121 AGATYVSPF---VGRLD-DIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHP 196 (214)
T ss_pred cCCcEEEee---cchHh-hcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCC
Confidence 688887432 22110 1112244444444443 33577888888889999998999999998886655 455
Q ss_pred CHHHHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKSVED 110 (115)
Q Consensus 96 d~~~~~~~l~~~~~~ 110 (115)
-..+.++.+.+-+++
T Consensus 197 ~t~~~~~~F~~dw~~ 211 (214)
T PRK01362 197 LTDKGLEKFLADWEK 211 (214)
T ss_pred chHHHHHHHHHHHHH
Confidence 556777777665443
No 349
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=85.48 E-value=12 Score=30.12 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCC--ccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--------------
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGG--QKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-------------- 70 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~g--q~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~-------------- 70 (115)
-|..+..+++++. -++|.+=+ .++|--|.+ .+- ..--+++|+++++..+++|++.=||=.
T Consensus 170 ~T~PeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~ 248 (347)
T TIGR01521 170 LTDPEEAADFVKK-TKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGG 248 (347)
T ss_pred CCCHHHHHHHHHH-HCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcc
Confidence 5777888888854 47887632 334444443 111 013577888888776579999888754
Q ss_pred ---------hhhHHHHHHcCCCEEEEccccc
Q 033625 71 ---------PSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 71 ---------~~ni~~l~~~Gad~iv~Gsaif 92 (115)
.+.++...+.|+.-|=+++.+.
T Consensus 249 ~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~ 279 (347)
T TIGR01521 249 EIKETYGVPVEEIVEGIKYGVRKVNIDTDLR 279 (347)
T ss_pred cccccCCCCHHHHHHHHHCCCeeEEeChHHH
Confidence 7899999999999999998875
No 350
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=85.42 E-value=2.6 Score=32.27 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=23.5
Q ss_pred ChhhHHHH-HHcCCC-EEEEcccccCCCCHHHHHH
Q 033625 70 GPSTIAEA-ASAGAN-CIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 70 ~~~ni~~l-~~~Gad-~iv~Gsaif~~~d~~~~~~ 102 (115)
+.+....+ -..|+| .+++|+.|..+.||.++++
T Consensus 224 ~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 224 EAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred CHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 45555553 346888 8999999999999876643
No 351
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.41 E-value=14 Score=27.98 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=49.7
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
-++.+++++. ++++|.+.+.+-+ -|..++...++....+.++... ..+++..+-. -+++..+.+.+.|++.+
T Consensus 150 av~n~~eI~a-v~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~-~~~~~~~~~~~~G~~~~ 227 (249)
T TIGR03239 150 GVDNVDEIAA-VDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA-PVEADARRYLEWGATFV 227 (249)
T ss_pred HHHhHHHHhC-CCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC-CCHHHHHHHHHcCCCEE
Confidence 3467888773 3679999987532 2444444445555444444221 1256665433 47889999999999999
Q ss_pred EEccc
Q 033625 86 VAGSS 90 (115)
Q Consensus 86 v~Gsa 90 (115)
++|+.
T Consensus 228 ~~~~D 232 (249)
T TIGR03239 228 AVGSD 232 (249)
T ss_pred EEhHH
Confidence 99964
No 352
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.38 E-value=9.4 Score=27.31 Aligned_cols=65 Identities=25% Similarity=0.382 Sum_probs=43.0
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs 89 (115)
+..+.+++ .+++.|.+-.-.+ ...+-++++++.++++.+.+--=++.+.++.+.++|+|+++++.
T Consensus 20 ~~~~~l~~--~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~ 84 (190)
T cd00452 20 ALAEALIE--GGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG 84 (190)
T ss_pred HHHHHHHH--CCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence 34444441 4799887643322 25556788887776554443333459999999999999998763
No 353
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.20 E-value=8.9 Score=28.28 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=44.1
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
.++|+|=+..-.|...- +..++..+.++++++..++.++.+..--..+.+..+.++|++.+-+.
T Consensus 31 ~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 31 AGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIF 94 (265)
T ss_pred cCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEE
Confidence 36888876554332111 34567788889888876667766554434889999999999987665
No 354
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=85.17 E-value=7.1 Score=29.75 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=50.0
Q ss_pred CCCCEEEEEeeeCCCCC-----cccchhHHHHHHHHHhhCCCCcEEEEc----CCChhh----HH---HHHHcCCCEEEE
Q 033625 24 NPVEMVLVMTVEPGFGG-----QKFMPEMMDKVRSLRNRYPSLDIEVDG----GLGPST----IA---EAASAGANCIVA 87 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~g-----q~~~~~~~~ki~~l~~~~~~~~i~~dG----GI~~~n----i~---~l~~~Gad~iv~ 87 (115)
.+++-|++++-+|--.+ ..|. .+.+.|+.+++.+.++.|.+.| -.+..+ +. .=.++||| +++
T Consensus 85 ~Gi~nvL~l~GD~~~~~~~~~~~~f~-~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~-f~i 162 (272)
T TIGR00676 85 LGIRHILALRGDPPKGEGTPTPGGFN-YASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD-YAI 162 (272)
T ss_pred CCCCEEEEeCCCCCCCCCCCCCCCCC-CHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eEe
Confidence 47999998888765333 3344 6888888888876666666655 111222 22 22479999 667
Q ss_pred cccccCCCCHHHHHHHHH
Q 033625 88 GSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 88 Gsaif~~~d~~~~~~~l~ 105 (115)
.-.+|..+...+..+.++
T Consensus 163 TQ~~fd~~~~~~~~~~~~ 180 (272)
T TIGR00676 163 TQLFFDNDDYYRFVDRCR 180 (272)
T ss_pred eccccCHHHHHHHHHHHH
Confidence 778887655444444444
No 355
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=85.07 E-value=1.9 Score=32.72 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=45.4
Q ss_pred EEEeeeCCC---CCcccchhHHHHH-HHHHhh---------CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625 30 LVMTVEPGF---GGQKFMPEMMDKV-RSLRNR---------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 30 lvm~v~pG~---~gq~~~~~~~~ki-~~l~~~---------~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~ 95 (115)
++++-+|-. +|+...++-.+.+ +.+|+. ..+++|.-=|+++++|+.++ ...++|++-+|++-.+.+
T Consensus 159 ~iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~ 238 (244)
T PF00121_consen 159 IIIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAE 238 (244)
T ss_dssp EEEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTH
T ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhccc
Confidence 455677732 4665544444432 223332 23689999999999999987 578999999999987765
Q ss_pred CHH
Q 033625 96 EPA 98 (115)
Q Consensus 96 d~~ 98 (115)
++.
T Consensus 239 ~F~ 241 (244)
T PF00121_consen 239 SFL 241 (244)
T ss_dssp HHH
T ss_pred chh
Confidence 543
No 356
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=85.03 E-value=2.8 Score=31.05 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+..++-|+++++.++++.+-+=.=.|.+.++...++||+++|.-
T Consensus 44 ~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP 87 (204)
T TIGR01182 44 PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSP 87 (204)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECC
Confidence 45777788888888776666655578999999999999998654
No 357
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.93 E-value=13 Score=28.87 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=56.6
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~i 85 (115)
.|..+...++++. -++|.+=+ .++|--|.+.+ --+++++++++.. ++|++.=|| +..+.++...+.|+.-+
T Consensus 152 ~T~pe~a~~Fv~~-TgvD~LAvaiGt~HG~Y~~p~---l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 226 (283)
T PRK07998 152 KTEPEKVKDFVER-TGCDMLAVSIGNVHGLEDIPR---IDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKV 226 (283)
T ss_pred cCCHHHHHHHHHH-hCcCeeehhccccccCCCCCC---cCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEE
Confidence 5778888888844 47886632 23344444422 2357788887764 799999885 78899999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
-+++.+.
T Consensus 227 Ni~Tel~ 233 (283)
T PRK07998 227 NIASDLR 233 (283)
T ss_pred EECHHHH
Confidence 9998875
No 358
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.79 E-value=15 Score=28.46 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=58.4
Q ss_pred CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|..+..+++++. -++|.+= +.++|-.|.+.+ .-.+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-+
T Consensus 154 ~T~pe~a~~Fv~~-TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 154 MTDPEEARRFVEE-TGVDALAIAIGTAHGPYKGEP--KLDFDRLAKIKELV-NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred cCCHHHHHHHHHH-HCCCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5778888888844 4788764 334565566533 23456677777664 68888887 588999999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 230 Ni~T~~~ 236 (284)
T PRK12857 230 NIDTNIR 236 (284)
T ss_pred EeCcHHH
Confidence 9998875
No 359
>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.70 E-value=2.7 Score=30.20 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=55.3
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHh-hCCCCcEEEEcCCChhhHHHHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRN-RYPSLDIEVDGGLGPSTIAEAAS 79 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~-~~~~~~i~~dGGI~~~ni~~l~~ 79 (115)
+.|+-|+|+..++.+.+++ +.+..|-| ..|-|. |..|. +-.-||+ +.-+=.+-+.|-+=-+.++.+..
T Consensus 54 ~lgV~l~Pddeve~L~~~l---~~lalVAv--~FP~F~DGRgyS-----~A~LLR~RlG~~GelRAVGDVLiDql~~M~R 123 (167)
T COG3749 54 RLGVWLAPDDEVEALAPDL---DRLALVAV--DFPAFRDGRGYS-----KAELLRSRLGFQGELRAVGDVLIDQLPFMLR 123 (167)
T ss_pred cceeeeCCccchhhhhccc---ccceEEEE--eccceecCccch-----HHHHHhhhccccchhhhhhhHHhhhhHHHHH
Confidence 4799999999999999988 55554432 368774 55543 2233332 22344578889999999999999
Q ss_pred cCCCEEEEc
Q 033625 80 AGANCIVAG 88 (115)
Q Consensus 80 ~Gad~iv~G 88 (115)
+|.|.|.+-
T Consensus 124 cGFDaFav~ 132 (167)
T COG3749 124 CGFDAFAVR 132 (167)
T ss_pred cCCceeeec
Confidence 999999775
No 360
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=84.60 E-value=14 Score=29.26 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcC----------------
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGG---------------- 68 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~i~~dGG---------------- 68 (115)
-|..+...++++. -++|.+=+ .++|--|.+.+ -..--+++|+++++..+++|++.=||
T Consensus 163 ~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 163 YTQPEEVEDFVKK-TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGG 241 (321)
T ss_pred cCCHHHHHHHHHH-hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcC
Confidence 5777888888843 47887643 33454454310 11245677888877765789987774
Q ss_pred -------CChhhHHHHHHcCCCEEEEccccc
Q 033625 69 -------LGPSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 69 -------I~~~ni~~l~~~Gad~iv~Gsaif 92 (115)
+..+.++...+.|+.-|=+++.+.
T Consensus 242 ~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~ 272 (321)
T PRK07084 242 KLKDAIGIPEEQLRKAAKSAVCKINIDSDGR 272 (321)
T ss_pred ccccCCCCCHHHHHHHHHcCCceeccchHHH
Confidence 467999999999999999988764
No 361
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=84.08 E-value=18 Score=28.14 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=58.6
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCE
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANC 84 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~ 84 (115)
..|..+..+++++. -++|.+=+ .++|-.|.+.+- +--+++|+++++.. ++|++.=|| +..+.++.+.+.|+.-
T Consensus 156 ~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~-~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~K 232 (288)
T TIGR00167 156 LYTDPEEAKEFVKL-TGVDSLAAAIGNVHGVYKGEPK-GLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVK 232 (288)
T ss_pred cCCCHHHHHHHHhc-cCCcEEeeccCccccccCCCCC-ccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeE
Confidence 36788888888854 47998743 334555544221 13566777777764 789998884 7788999999999999
Q ss_pred EEEccccc
Q 033625 85 IVAGSSVF 92 (115)
Q Consensus 85 iv~Gsaif 92 (115)
+=+++.+.
T Consensus 233 iNi~T~l~ 240 (288)
T TIGR00167 233 VNIDTELQ 240 (288)
T ss_pred EEcChHHH
Confidence 99998873
No 362
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=83.93 E-value=4.2 Score=35.74 Aligned_cols=85 Identities=7% Similarity=-0.017 Sum_probs=61.5
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC--------------CCCcccchhHHHHHHHHHhh--CCCCcEEEE
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--------------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVD 66 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG--------------~~gq~~~~~~~~ki~~l~~~--~~~~~i~~d 66 (115)
+|+.+-...-+..+++++ ..+|++.|.+-+-. .-++...|..++.|+++.+. ..++++.+.
T Consensus 665 vg~mIEtp~av~~~d~Ia---~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgic 741 (782)
T TIGR01418 665 VYVMCEVPSNALLADEFA---KEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGIC 741 (782)
T ss_pred EEEEECcHHHHHHHHHHH---HhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 555665555667888888 77999988664322 13455667777777776543 246888887
Q ss_pred cCC---ChhhHHHHHHcCCCEEEEccc
Q 033625 67 GGL---GPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 67 GGI---~~~ni~~l~~~Gad~iv~Gsa 90 (115)
|-. +++.++.+.+.|++.+.+++.
T Consensus 742 ge~~~~~p~~~~~l~~~G~~~ls~~~d 768 (782)
T TIGR01418 742 GQAPSDYPEVVEFLVEEGIDSISLNPD 768 (782)
T ss_pred CCCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 742 799999999999999999864
No 363
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=83.80 E-value=12 Score=26.48 Aligned_cols=93 Identities=19% Similarity=0.152 Sum_probs=48.8
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--hhhHHHHHHcCCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGAN 83 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~--~~ni~~l~~~Gad 83 (115)
++++....+.++.... .++|+|.+-..+-.|.. ..+..++.++++++.. +.++.++==++ .+.++.+.++|+|
T Consensus 8 ~~d~~~~~~~~~~~~~--~G~~~i~l~~~d~~~~~--~~~~~~~~~~~i~~~~-~~~~~v~l~~~d~~~~~~~~~~~g~d 82 (211)
T cd00429 8 SADFANLGEELKRLEE--AGADWIHIDVMDGHFVP--NLTFGPPVVKALRKHT-DLPLDVHLMVENPERYIEAFAKAGAD 82 (211)
T ss_pred cCCHHHHHHHHHHHHH--cCCCEEEEecccCCCCC--ccccCHHHHHHHHhhC-CCcEEEEeeeCCHHHHHHHHHHcCCC
Confidence 4455555566777661 36999988433322211 1112335566666554 34443332223 2458888899999
Q ss_pred EEEEcccccCCCCHHHHHHHHH
Q 033625 84 CIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 84 ~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
++.+--.-. +++.+.++.++
T Consensus 83 gv~vh~~~~--~~~~~~~~~~~ 102 (211)
T cd00429 83 IITFHAEAT--DHLHRTIQLIK 102 (211)
T ss_pred EEEECccch--hhHHHHHHHHH
Confidence 985543221 34444444443
No 364
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.65 E-value=3.3 Score=30.64 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+..++-|+++++.++++.|-+=.=+|.+.++...++||+++|.=
T Consensus 40 p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP 83 (201)
T PRK06015 40 PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP 83 (201)
T ss_pred ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 45777788888877776666666678999999999999998754
No 365
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.46 E-value=4.3 Score=30.06 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCCCEEEEEeee-CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625 24 NPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 24 ~~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.++|..++-+.. -|.+--+|. ..+.+.+.-.. -.++.....|.++.++++.|.+.|+|++=+-++...
T Consensus 143 ag~DvaMvDTaiKDGkslFdfm--~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~ 213 (235)
T COG1891 143 AGADVAMVDTAIKDGKSLFDFM--DEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAACE 213 (235)
T ss_pred cCCCEEEEecccccchhHHhhh--cHHHHHHHHHHHHHcchHHHhccccccccchHHHHhCCCeeeecchhcc
Confidence 578998876643 333322332 23334443221 126889999999999999999999999877677665
No 366
>PRK08444 hypothetical protein; Provisional
Probab=83.44 E-value=4.9 Score=32.04 Aligned_cols=65 Identities=14% Similarity=0.401 Sum_probs=44.1
Q ss_pred CCCCEEEEEe-eeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-----------EcCCCh-hhHHHHHHcCCCEEEEcc-
Q 033625 24 NPVEMVLVMT-VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-----------DGGLGP-STIAEAASAGANCIVAGS- 89 (115)
Q Consensus 24 ~~vD~vlvm~-v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-----------dGGI~~-~ni~~l~~~Gad~iv~Gs- 89 (115)
.++.-+.+.+ .+|-. . .+...+-++.+++..|++.+.+ .-|++. +.+..|+++|+|-+--|+
T Consensus 95 ~G~~ei~iv~G~~p~~---~-~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~a 170 (353)
T PRK08444 95 RGIKEVHIVSAHNPNY---G-YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGA 170 (353)
T ss_pred CCCCEEEEeccCCCCC---C-HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCc
Confidence 3566666554 34433 1 2345556777787778888887 556665 999999999999876643
Q ss_pred ccc
Q 033625 90 SVF 92 (115)
Q Consensus 90 aif 92 (115)
.+|
T Consensus 171 Ei~ 173 (353)
T PRK08444 171 EIF 173 (353)
T ss_pred hhc
Confidence 477
No 367
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=83.32 E-value=17 Score=28.16 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|..+..+++++. -++|++= +.++|--|.+.+ .--+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-|
T Consensus 152 ~T~peea~~Fv~~-TgvD~LAvaiGt~HG~yk~~p--~Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 152 YTDPQEAKEFVEA-TGVDSLAVAIGTAHGLYKKTP--KLDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred cCCHHHHHHHHHH-HCcCEEecccCccccCcCCCC--ccCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 5777888888854 5889764 333455555533 34566777777764 78999888 578899999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 228 Ni~T~l~ 234 (282)
T TIGR01858 228 NVATELK 234 (282)
T ss_pred EeCcHHH
Confidence 9998875
No 368
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=83.28 E-value=15 Score=27.89 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=50.2
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCccc-------------chhHHHHHHHHHhhCCCCcEEEEcCCCh----
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKF-------------MPEMMDKVRSLRNRYPSLDIEVDGGLGP---- 71 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~-------------~~~~~~ki~~l~~~~~~~~i~~dGGI~~---- 71 (115)
|.++.+..+.+ .++|+|=+.- .+|=.+|--. ....++.++++|+...++|+..-+=-|+
T Consensus 25 ~~~~~~~~l~~--~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~ 102 (256)
T TIGR00262 25 TSLEIIKTLIE--AGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHH--cCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhh
Confidence 33455666552 5899997643 2343444222 1356666778876645788878887776
Q ss_pred --hh-HHHHHHcCCCEEEEcc
Q 033625 72 --ST-IAEAASAGANCIVAGS 89 (115)
Q Consensus 72 --~n-i~~l~~~Gad~iv~Gs 89 (115)
++ +..+.++|+|.+++--
T Consensus 103 G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECC
Confidence 44 7789999999987763
No 369
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=83.26 E-value=4.5 Score=30.55 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=48.3
Q ss_pred CCCCEEEEEeee-CCCC-CcccchhHHHHHHHHHhh---CCCCc---EEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625 24 NPVEMVLVMTVE-PGFG-GQKFMPEMMDKVRSLRNR---YPSLD---IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 24 ~~vD~vlvm~v~-pG~~-gq~~~~~~~~ki~~l~~~---~~~~~---i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~ 95 (115)
+.+.+.++|++- ++++ .+.-.| -+..+-++|+. -.++| +...=|.+.+-... ++.|.+.+=+||.||++.
T Consensus 160 ~nL~f~GlMTIGs~~~s~ss~eNp-DF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~A-Ie~Gst~VRvGStIFG~R 237 (244)
T KOG3157|consen 160 KNLKFSGLMTIGSFDNSHSSGENP-DFQVLVKLRESICKKLGIPADQVELSMGMSADFLLA-IEQGSTNVRVGSTIFGAR 237 (244)
T ss_pred CcceeeeeEEeccccccccCCCCc-cHHHHHHHHHHHHHHhCCChHHhhhhcccchhHHHH-HHhCCceEEeccccccCC
Confidence 678889999985 5665 222221 23444444432 12455 77788887765544 588999999999999987
Q ss_pred CHH
Q 033625 96 EPA 98 (115)
Q Consensus 96 d~~ 98 (115)
.+.
T Consensus 238 ~y~ 240 (244)
T KOG3157|consen 238 EYK 240 (244)
T ss_pred CCC
Confidence 653
No 370
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=83.10 E-value=20 Score=27.92 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|..+..+++++. -++|.+=+ .++|--|.+.+ .--+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-+
T Consensus 155 yT~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p--~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 155 YADPKECQELVEK-TGIDALAPALGSVHGPYKGEP--KLGFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred cCCHHHHHHHHHH-HCCCEEEeeccccccccCCCC--CCCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5888888888854 48997643 33454455433 22466777777664 79999888 578899999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 231 Ni~T~l~ 237 (286)
T PRK08610 231 NVNTENQ 237 (286)
T ss_pred EeccHHH
Confidence 9998874
No 371
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.07 E-value=19 Score=28.04 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=58.3
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|..+..+.+++. -++|.+=+ .++|--|.+.+ .--+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-+
T Consensus 154 ~T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 154 YTDPAQAREFVEA-TGIDSLAVAIGTAHGMYKGEP--KLDFDRLENIRQWV-NIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred CCCHHHHHHHHHH-HCcCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 5778888888844 47897643 33455555533 23466777777664 78998888 588999999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 230 Ni~T~l~ 236 (284)
T PRK09195 230 NVATELK 236 (284)
T ss_pred EeCcHHH
Confidence 9998875
No 372
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.74 E-value=20 Score=27.79 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=58.3
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
-|..+..+++++. -++|.+=+ .++|--|.+.+ .--+++|+++++.. ++|++.=| |+..+.++...+.|+.-+
T Consensus 154 ~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 154 YTNPDAAAEFVER-TGIDSLAVAIGTAHGLYKGEP--KLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCCHHHHHHHHHH-hCCCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5777888888854 58897643 33455565533 23556777777654 68998888 588999999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 230 Ni~T~l~ 236 (284)
T PRK12737 230 NVATELK 236 (284)
T ss_pred EeCcHHH
Confidence 9998874
No 373
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=82.72 E-value=11 Score=24.85 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHH--HHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE--AASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~--l~~~Gad~iv~G 88 (115)
...|.|.+-+..+- . ....+-++.+|+.+|+. ..+.||......++ +...++|.++.|
T Consensus 38 ~~pdiv~~S~~~~~----~--~~~~~~~~~ik~~~p~~-~iv~GG~~~t~~p~~~~~~~~~D~vv~G 97 (127)
T cd02068 38 LKPDVVGISLMTSA----I--YEALELAKIAKEVLPNV-IVVVGGPHATFFPEEILEEPGVDFVVIG 97 (127)
T ss_pred cCCCEEEEeecccc----H--HHHHHHHHHHHHHCCCC-EEEECCcchhhCHHHHhcCCCCCEEEEC
Confidence 36888876443221 1 14555567777777765 55667766554443 467899999888
No 374
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=82.51 E-value=3.2 Score=30.53 Aligned_cols=44 Identities=27% Similarity=0.472 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+..++-|+++++.+|++.+-+=.=+|.+.++...++||+++|.=
T Consensus 44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP 87 (196)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES
T ss_pred ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC
Confidence 45677788888888887776666678999999999999998765
No 375
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=82.37 E-value=7.8 Score=30.09 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~i 85 (115)
.|..+...++++. -++|.+=+ .++|-.|.+-.-..--+++|+++++..+++|++.=|| +..+.++.+.+.|+.-|
T Consensus 154 ~TdP~~a~~Fv~~-TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 154 YTDPEEAKEFVEE-TGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSSHHHHHHHHHH-HTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred ccCHHHHHHHHHH-hCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 4777888888744 58998532 2233334441111235677888877755799999885 78899999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 233 Ni~T~~~ 239 (287)
T PF01116_consen 233 NIGTELR 239 (287)
T ss_dssp EESHHHH
T ss_pred EEehHHH
Confidence 9998765
No 376
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=82.11 E-value=4.7 Score=31.71 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhCCCCcEEE---EcCCChhhHHHHHHcCCCEEEEcc
Q 033625 46 EMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~---dGGI~~~ni~~l~~~Gad~iv~Gs 89 (115)
..++.|+.+++.. ++|+.+ -.|.+.+.+..+.++|+|.++++.
T Consensus 166 ~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 166 GWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 4557788888764 688876 445899999999999999999975
No 377
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=81.99 E-value=4.3 Score=32.62 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=46.6
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEccccc
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif 92 (115)
..|.|-+ .+-|-.-.++-..+++-|-++++..+ .+++.+||||+ .-.+-..+..|||.+-+|..+.
T Consensus 239 g~~~I~v--snhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L 306 (360)
T COG1304 239 GADGIEV--SNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL 306 (360)
T ss_pred CceEEEE--EcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence 4555543 33343444566777777888887766 49999999997 4456667799999999997743
No 378
>PLN02561 triosephosphate isomerase
Probab=81.96 E-value=14 Score=28.29 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=42.7
Q ss_pred EEEeeeCCC---CCcccchhHHHHHHH-HHh----h-----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccC
Q 033625 30 LVMTVEPGF---GGQKFMPEMMDKVRS-LRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFG 93 (115)
Q Consensus 30 lvm~v~pG~---~gq~~~~~~~~ki~~-l~~----~-----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~ 93 (115)
++++-+|-. +|+...++-.+.+.+ +|+ + .++++|.-=|+|+++|+.++ ...++|++-+|++=..
T Consensus 161 iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 161 VVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence 456667732 455544444433322 222 1 23689999999999999986 6778999999987554
No 379
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=81.93 E-value=7.4 Score=29.86 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=51.9
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcC
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
+...+-++.+..++ +.+++|.|.+.+.+ -|+.|++-.++..+.|+.+-+. +.+=+..-+=-.+++-++.+.+.|
T Consensus 151 iEtr~gl~nLDaIa-aveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~~~p~~a~~yl~lG 229 (255)
T COG3836 151 IETRAGLDNLDAIA-AVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILAADPADARRYLALG 229 (255)
T ss_pred EccHHHHHHHHHHH-ccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHhC
Confidence 33445567777776 44799999987643 3666666555655555544221 111111111124789999999999
Q ss_pred CCEEEEccc
Q 033625 82 ANCIVAGSS 90 (115)
Q Consensus 82 ad~iv~Gsa 90 (115)
+.++++|+.
T Consensus 230 a~fvavG~D 238 (255)
T COG3836 230 ATFVAVGSD 238 (255)
T ss_pred CeEEEEecc
Confidence 999999964
No 380
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=81.90 E-value=14 Score=25.46 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
...|.+++-...|+.. .++.++++++..++.|+.+. +--+.+......++|++.++. +.-++.+-..
T Consensus 43 ~~~d~illd~~~~~~~-------g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~-----kp~~~~~l~~ 110 (222)
T PRK10643 43 GHYSLVVLDLGLPDED-------GLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVGADDYLV-----KPFALEELHA 110 (222)
T ss_pred CCCCEEEEECCCCCCC-------HHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHH
Confidence 3578887655455543 34556677766566776554 445566777788999987643 3345555555
Q ss_pred HHHHHHH
Q 033625 103 LMRKSVE 109 (115)
Q Consensus 103 ~l~~~~~ 109 (115)
.++..+.
T Consensus 111 ~i~~~~~ 117 (222)
T PRK10643 111 RIRALIR 117 (222)
T ss_pred HHHHHHh
Confidence 5554443
No 381
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=81.79 E-value=3.3 Score=34.44 Aligned_cols=90 Identities=17% Similarity=0.346 Sum_probs=61.1
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-------chhHHHHHHHHHhhCCCCcEE--EEcCCC-------hhh--
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-------MPEMMDKVRSLRNRYPSLDIE--VDGGLG-------PST-- 73 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-------~~~~~~ki~~l~~~~~~~~i~--~dGGI~-------~~n-- 73 (115)
..+...+++ +..|-+.+-+++-+ +|..| .++.+++++.+|+..++.++. .- |.| +++
T Consensus 33 ~t~d~l~ia---~~ld~~G~~siE~w-GGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlR-G~n~vgy~~ypddvv 107 (468)
T PRK12581 33 SIEDMLPVL---TILDKIGYYSLECW-GGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLR-GQNLLGYRHYADDIV 107 (468)
T ss_pred CHHHHHHHH---HHHHhcCCCEEEec-CCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeec-cccccCccCCcchHH
Confidence 345555666 55666666666664 34333 367899999999988876654 45 422 234
Q ss_pred ---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625 74 ---IAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106 (115)
Q Consensus 74 ---i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~ 106 (115)
++...+.|+|+|=+..++...++...+++..++
T Consensus 108 ~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~ 143 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKK 143 (468)
T ss_pred HHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHH
Confidence 777889999999998888755666666665554
No 382
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=81.57 E-value=13 Score=29.48 Aligned_cols=61 Identities=28% Similarity=0.311 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc----ccCCCCHHHHHHHHHHH
Q 033625 46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS----VFGAPEPAHVISLMRKS 107 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa----if~~~d~~~~~~~l~~~ 107 (115)
...+.|+++++.. +.|+.+=|--+.+.+..+.++|+|.|++... +-....+...+.++++.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~ 264 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKH 264 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHH
Confidence 4567788888764 6899999888999999999999999998632 21223344455555443
No 383
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=81.54 E-value=4.4 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=39.1
Q ss_pred CCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625 60 SLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106 (115)
Q Consensus 60 ~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~ 106 (115)
++.+++--| -|++.+..+..+|+..+.+|-++.++.||+..+.+|..
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~ 284 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG 284 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence 444555445 47999999999999999999999999999999888753
No 384
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=81.52 E-value=8.3 Score=29.93 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=44.5
Q ss_pred HhHHHhHhCCCCCCEEEEEe--eeCCCCCcccchh---HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 14 EEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMPE---MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~~---~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+..+.+++ .++|+|=|.+ ..||.....-.++ ...-|+.+++.. ++||++|=- +++.+...+++|||++=-.
T Consensus 42 ~~a~~~~~--~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~-~~~va~~AL~~GadiINDI 117 (282)
T PRK11613 42 KHANLMIN--AGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTS-KPEVIRESAKAGAHIINDI 117 (282)
T ss_pred HHHHHHHH--CCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECC-CHHHHHHHHHcCCCEEEEC
Confidence 44445552 5899987763 4476543222222 222345555433 688888865 7888888888888877544
Q ss_pred ccc
Q 033625 89 SSV 91 (115)
Q Consensus 89 sai 91 (115)
+++
T Consensus 118 ~g~ 120 (282)
T PRK11613 118 RSL 120 (282)
T ss_pred CCC
Confidence 543
No 385
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=81.49 E-value=4.1 Score=32.85 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
-+.+.|+.+|+.- +.||.+=|=.+.+....+.++|+|.|++.
T Consensus 211 ~tW~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 211 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEEC
Confidence 4567788888764 69999999999999999999999999887
No 386
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=81.42 E-value=23 Score=27.55 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=58.2
Q ss_pred CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|..+...++++. -++|.+= +.++|--|.+.+- -.+++++++++.. ++|++.=| |+..+.++...+.|+.-|
T Consensus 154 ~T~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~--Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 154 LTDPQEAKRFVEL-TGVDSLAVAIGTAHGLYSKTPK--IDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred CCCHHHHHHHHHH-hCCCEEEeccCcccCCCCCCCc--CCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5778888888844 4799763 2334544544332 3467788887765 79999888 578899999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 230 Ni~T~l~ 236 (286)
T PRK12738 230 NVATELK 236 (286)
T ss_pred EeCcHHH
Confidence 9998874
No 387
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=81.29 E-value=22 Score=29.17 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=55.1
Q ss_pred CCCCEEEEEeeeCCC--CCcccchhHHHHHHHH-HhhC---CCCcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCC-
Q 033625 24 NPVEMVLVMTVEPGF--GGQKFMPEMMDKVRSL-RNRY---PSLDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGA- 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~--~gq~~~~~~~~ki~~l-~~~~---~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~- 94 (115)
.++|.+.+ |++ +.-.+.++....+.+. ++-. +.+-=+..||+++..++++ ...|-|++.. |.+|+..
T Consensus 297 aGaD~~~~----~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp 372 (412)
T TIGR03326 297 IGVDQLHT----GTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHP 372 (412)
T ss_pred cCCCeeee----CCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCChhHHHHHHHhcCCceEEecCCccccCC
Confidence 58898863 444 2223334443344333 3211 2344578999999999985 7789997765 5779986
Q ss_pred CCHHHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVEDA 111 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~~~ 111 (115)
+.+++-++.+|+.++.+
T Consensus 373 ~G~~aGa~A~rqA~ea~ 389 (412)
T TIGR03326 373 DGPRAGAKALRAAIDAI 389 (412)
T ss_pred CChhhHHHHHHHHHHHH
Confidence 46888889999877653
No 388
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=81.25 E-value=5.4 Score=24.89 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred eEEEec-CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 3 PGVALK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 3 ~Glal~-p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
+.+..| |...++.+...+ ++...-.|+.+. +..|. .+...++...-.+.+++|.++|
T Consensus 6 ~~l~~Nvp~~~l~~v~~il---Pg~~~PTVs~L~----~~~w~---------------AV~~vV~~~~~~~~~~~Lk~~G 63 (75)
T PF08029_consen 6 VLLMMNVPRESLEEVIKIL---PGLKSPTVSPLA----DEDWV---------------AVHAVVPEKQVWDLMDKLKAAG 63 (75)
T ss_dssp EEEEEEEECCCHHHHHHHS-----SSS-EEEE-S----STTEE---------------EEEEEEECCCHHHHHHHHHCTT
T ss_pred eEEEEeCCHHHHHHHHHhC---CCCCCCceeecC----CCCEE---------------EEEEEecHHHHHHHHHHHHHcC
Confidence 445555 667777777777 666666666551 11111 3668889999999999999999
Q ss_pred CCEEEEc
Q 033625 82 ANCIVAG 88 (115)
Q Consensus 82 ad~iv~G 88 (115)
|..|++-
T Consensus 64 A~~Ilv~ 70 (75)
T PF08029_consen 64 ASDILVL 70 (75)
T ss_dssp -EEEEEE
T ss_pred CCEEEEE
Confidence 9888764
No 389
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=81.13 E-value=13 Score=27.86 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc---ccccC----CCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG---SSVFG----APE 96 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G---saif~----~~d 96 (115)
.++|+|=+. .|..+ +...+.++++++..++..+.+-+-.+.+.++...++|+|.+-+. |.++. ..+
T Consensus 32 ~Gv~~iE~g--~p~~~-----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~ 104 (259)
T cd07939 32 AGVDEIEVG--IPAMG-----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKD 104 (259)
T ss_pred cCCCEEEEe--cCCCC-----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCC
Confidence 477877653 34322 23346677777755667777776578999999999999987665 33321 124
Q ss_pred HHHHHHHHHHHHHHHhh
Q 033625 97 PAHVISLMRKSVEDAQK 113 (115)
Q Consensus 97 ~~~~~~~l~~~~~~~~~ 113 (115)
.++.++.+++.++.+++
T Consensus 105 ~~~~~~~~~~~i~~a~~ 121 (259)
T cd07939 105 RAWVLDQLRRLVGRAKD 121 (259)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666677776665543
No 390
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=80.90 E-value=17 Score=27.30 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCCCEEEEEeeeCCCCCcccc---hhHHHHHHHHHhhCC-CCcEE-EEcCCChh-hHH---HHHHcCCCEEEEcccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFM---PEMMDKVRSLRNRYP-SLDIE-VDGGLGPS-TIA---EAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~---~~~~~ki~~l~~~~~-~~~i~-~dGGI~~~-ni~---~l~~~Gad~iv~Gsaif~~ 94 (115)
.++|.+.++ |.+|.-+. ++-.+-++.+++... .+|+. -.|+.+.+ .+. ...+.|+|.+.+..-.|..
T Consensus 30 ~Gv~gi~~~----GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~ 105 (281)
T cd00408 30 AGVDGLVVL----GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK 105 (281)
T ss_pred cCCCEEEEC----CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 478888654 66665443 222333444444432 45543 23333332 333 4578899999999877665
Q ss_pred CCHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVE 109 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~ 109 (115)
.+.++.++.++++.+
T Consensus 106 ~~~~~~~~~~~~ia~ 120 (281)
T cd00408 106 PSQEGIVAHFKAVAD 120 (281)
T ss_pred CCHHHHHHHHHHHHh
Confidence 666776666666554
No 391
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=80.78 E-value=4.8 Score=32.38 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
..+.|+++++.. +.|+.+-|=++.+....+.++|+|.|+++
T Consensus 224 ~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEEC
Confidence 466788888876 56888888899999999999999999875
No 392
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=80.75 E-value=21 Score=28.60 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCc-ccc--hhHHHHHHHHHhhCCCCcEEEEcCCC--------------
Q 033625 10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQ-KFM--PEMMDKVRSLRNRYPSLDIEVDGGLG-------------- 70 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq-~~~--~~~~~ki~~l~~~~~~~~i~~dGGI~-------------- 70 (115)
-|..+...++++. -++|.+= +.++|--|.+. +.. .--+++++++++..+++|++.=||=.
T Consensus 172 ~T~PeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~ 250 (347)
T PRK13399 172 LTDPDQAVDFVQR-TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGG 250 (347)
T ss_pred CCCHHHHHHHHHH-HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcC
Confidence 5777778888844 4788653 23344445431 111 13467888888876579999888754
Q ss_pred ---------hhhHHHHHHcCCCEEEEccccc
Q 033625 71 ---------PSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 71 ---------~~ni~~l~~~Gad~iv~Gsaif 92 (115)
.|.++...+.|+.-|=+++.+.
T Consensus 251 ~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~ 281 (347)
T PRK13399 251 KMKETYGVPVEEIQRGIKHGVRKVNIDTDIR 281 (347)
T ss_pred CccccCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 6899999999999999998764
No 393
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.70 E-value=15 Score=26.62 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=44.8
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc---EEEEcCCChhhHH----HHHHcCCCEEE
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD---IEVDGGLGPSTIA----EAASAGANCIV 86 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~---i~~dGGI~~~ni~----~l~~~Gad~iv 86 (115)
..+++.+. .++|-|-++ ++.|.-.........+.+.++++...+.| |.-.|..+.+.+. ...++|||++=
T Consensus 73 ~eve~A~~--~GAdevdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 73 AEAREAIA--DGADEIDMV-INIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred HHHHHHHH--cCCCEEEEe-ecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 34555553 245554332 45563212223456666777777654555 4556778877754 45889999998
Q ss_pred Eccccc
Q 033625 87 AGSSVF 92 (115)
Q Consensus 87 ~Gsaif 92 (115)
..+.-.
T Consensus 150 TsTG~~ 155 (203)
T cd00959 150 TSTGFG 155 (203)
T ss_pred cCCCCC
Confidence 886654
No 394
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.69 E-value=8.3 Score=24.70 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 87 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~ 87 (115)
..+|.+++++-+. ...+.-...+++.++..++.+--. +.++.+.+.+.|+|.++.
T Consensus 61 ~~a~~vv~~~~~d--------~~n~~~~~~~r~~~~~~~ii~~~~-~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 61 EKADAVVILTDDD--------EENLLIALLARELNPDIRIIARVN-DPENAELLRQAGADHVIS 115 (116)
T ss_dssp GCESEEEEESSSH--------HHHHHHHHHHHHHTTTSEEEEEES-SHHHHHHHHHTT-SEEEE
T ss_pred cccCEEEEccCCH--------HHHHHHHHHHHHHCCCCeEEEEEC-CHHHHHHHHHCCcCEEEC
Confidence 5788887654321 344445566677788777777665 788899999999999874
No 395
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=80.57 E-value=23 Score=26.95 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=59.4
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
+++.+-++.++.+. + .++|.|=+.. |... +...+.++.+.+......+.+-.=.+.+.++...++|+|.+-
T Consensus 19 ~s~~~k~~i~~~L~-~-~Gv~~IEvG~--P~~~-----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 19 FDTEDKIEIAKALD-A-FGVDYIELTS--PAAS-----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCHHHHHHHHHHHH-H-cCCCEEEEEC--CCCC-----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 33333344455544 2 4788887653 5433 444555666655444455666667789999999999999876
Q ss_pred Ec---ccccC----CCCHHHHHHHHHHHHHHHh
Q 033625 87 AG---SSVFG----APEPAHVISLMRKSVEDAQ 112 (115)
Q Consensus 87 ~G---saif~----~~d~~~~~~~l~~~~~~~~ 112 (115)
+. |..+. ..++++.++.+++.++.++
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~ 122 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVK 122 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 64 33332 2356677777777766544
No 396
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=80.56 E-value=4.7 Score=32.65 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
-+.+.|+++++.. +.|+.+=|=.+.+....+.++|+|.|++.
T Consensus 240 ~tW~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 240 LTWEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCHHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 4567888888764 68999999999999999999999999976
No 397
>PTZ00413 lipoate synthase; Provisional
Probab=80.48 E-value=7.1 Score=31.90 Aligned_cols=82 Identities=10% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCCCEEEEEeeeC-CCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-C--ChhhHHHHHHcCCCEEEEc----ccccC--
Q 033625 24 NPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-L--GPSTIAEAASAGANCIVAG----SSVFG-- 93 (115)
Q Consensus 24 ~~vD~vlvm~v~p-G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I--~~~ni~~l~~~Gad~iv~G----saif~-- 93 (115)
.++.|++|.++.- ......+ ....+.++++++..+++.|++--| . +.+.+..|+++|+|.+--. -.+|.
T Consensus 192 ~Gl~~~VVTSv~RDDL~D~ga-~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~V 270 (398)
T PTZ00413 192 MGVDYIVMTMVDRDDLPDGGA-SHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYV 270 (398)
T ss_pred cCCCEEEEEEEcCCCCChhhH-HHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHH
Confidence 4688998888852 2211111 234455777887778888888733 3 8899999999999998655 22442
Q ss_pred -C--CCHHHHHHHHHH
Q 033625 94 -A--PEPAHVISLMRK 106 (115)
Q Consensus 94 -~--~d~~~~~~~l~~ 106 (115)
. .++.+.++.|+.
T Consensus 271 Rt~~atYe~sLe~Lr~ 286 (398)
T PTZ00413 271 RDRRASYRQSLKVLEH 286 (398)
T ss_pred ccCcCCHHHHHHHHHH
Confidence 1 256666666554
No 398
>PLN02979 glycolate oxidase
Probab=80.37 E-value=4.7 Score=32.53 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
-+.+.|+.+|+.- +.|+.+=|=.+.+....+.++|+|.|+++
T Consensus 210 ltW~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 210 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence 4567788888764 79999999999999999999999999887
No 399
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=80.04 E-value=21 Score=26.08 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=50.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
...|.+++--.-||.. .++-++++++..|++++ ....--+.+.+....++||++++.- ..++.+-..
T Consensus 45 ~~pdvvl~Dl~mP~~~-------G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K-----~~~~~~l~~ 112 (211)
T COG2197 45 LKPDVVLLDLSMPGMD-------GLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLK-----DASPEELVE 112 (211)
T ss_pred cCCCEEEEcCCCCCCC-------hHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHH
Confidence 5789988776667744 45556777777787664 4566777888889999999999664 445555555
Q ss_pred HHHHHH
Q 033625 103 LMRKSV 108 (115)
Q Consensus 103 ~l~~~~ 108 (115)
.++..+
T Consensus 113 ai~~v~ 118 (211)
T COG2197 113 AIRAVA 118 (211)
T ss_pred HHHHHH
Confidence 555443
No 400
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=79.94 E-value=14 Score=26.31 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCC-CCcccchhHHHHHHHHHhhCCCCcEEE--EcCCChhhHHHHHHcCCCEEEE
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEV--DGGLGPSTIAEAASAGANCIVA 87 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~i~~--dGGI~~~ni~~l~~~Gad~iv~ 87 (115)
...+.++.+. + .++|+|-+......| .+-.+ .++.++++++. ++.++.+ -.-=..+-++.+.++|+|++++
T Consensus 12 ~~~~~~~~~~-~-~g~d~i~~~~~Dg~~~~~~~~---~~~~v~~i~~~-~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 12 RLGEEVKAVE-E-AGADWIHVDVMDGHFVPNLTF---GPPVLEALRKY-TDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred HHHHHHHHHH-H-cCCCEEEEcCCCCCCCCCccc---CHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 3445555555 1 479999986333222 22223 44556666654 3444322 1111356677889999999877
Q ss_pred cc
Q 033625 88 GS 89 (115)
Q Consensus 88 Gs 89 (115)
-.
T Consensus 86 h~ 87 (210)
T TIGR01163 86 HP 87 (210)
T ss_pred cc
Confidence 53
No 401
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=79.90 E-value=18 Score=27.21 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=61.3
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeC----CCCCccc--chhHHHHHHHHHhhCCCCcEEEEcCC---C----h
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEP----GFGGQKF--MPEMMDKVRSLRNRYPSLDIEVDGGL---G----P 71 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~p----G~~gq~~--~~~~~~ki~~l~~~~~~~~i~~dGGI---~----~ 71 (115)
++.+.....+...--- .++|.+.+-+--- |+..... ..+.+..++.+.+.. +.|+.+|+-. + .
T Consensus 12 ~~~~~~D~~sA~~~e~---~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~ 87 (243)
T cd00377 12 VLPGAWDALSARLAER---AGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVA 87 (243)
T ss_pred EecCCCCHHHHHHHHH---cCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHH
Confidence 3445555555444323 5789988754211 3322211 245556666665543 6899999877 4 3
Q ss_pred hhHHHHHHcCCCEEEEcccccCCC----------CHHHHHHHHHHHHHH
Q 033625 72 STIAEAASAGANCIVAGSSVFGAP----------EPAHVISLMRKSVED 110 (115)
Q Consensus 72 ~ni~~l~~~Gad~iv~Gsaif~~~----------d~~~~~~~l~~~~~~ 110 (115)
+|++.+.++|++.+.+--..+... ++++.+++++...+.
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a 136 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDA 136 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHH
Confidence 456677889999999944443221 567777777766554
No 402
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.75 E-value=26 Score=27.10 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=57.2
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCC-cccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGG-QKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANC 84 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~g-q~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~ 84 (115)
.|..+..+++++. -++|++=+ .++|-.|.+ ++- --+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-
T Consensus 147 ~T~pe~a~~Fv~~-TgvD~LAvsiGt~HG~Y~~~~p~--L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~K 222 (276)
T cd00947 147 LTDPEEAEEFVEE-TGVDALAVAIGTSHGAYKGGEPK--LDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLGVCK 222 (276)
T ss_pred CCCHHHHHHHHHH-HCCCEEEeccCccccccCCCCCc--cCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeE
Confidence 4777888888854 47887643 335555544 322 3456777777764 68888888 57889999999999999
Q ss_pred EEEccccc
Q 033625 85 IVAGSSVF 92 (115)
Q Consensus 85 iv~Gsaif 92 (115)
+=+++.+.
T Consensus 223 iNi~T~l~ 230 (276)
T cd00947 223 ININTDLR 230 (276)
T ss_pred EEeChHHH
Confidence 99998874
No 403
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.60 E-value=25 Score=26.70 Aligned_cols=73 Identities=23% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSV 91 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsai 91 (115)
.+..+.|. . .++|.+-++ ++|.|-+.. ++-|+.+++.. ++||.. |==+.+.-+.+...+|||++.+....
T Consensus 73 ~~~A~~~~-~-~GA~aisvl-te~~~f~g~-----~~~l~~v~~~v-~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYE-A-GGAACLSVL-TDERFFQGS-----LEYLRAARAAV-SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHH-h-CCCeEEEEe-cccccCCCC-----HHHHHHHHHhc-CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 44444544 2 478888554 455433322 45667776653 567653 33455667888999999999999777
Q ss_pred cCC
Q 033625 92 FGA 94 (115)
Q Consensus 92 f~~ 94 (115)
...
T Consensus 144 l~~ 146 (260)
T PRK00278 144 LDD 146 (260)
T ss_pred CCH
Confidence 643
No 404
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=79.54 E-value=5.5 Score=31.15 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=41.5
Q ss_pred CCCCEEEEEeeeCC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcC---CChhhHHHHHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG-~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG---I~~~ni~~l~~~Gad~iv~G 88 (115)
.++..|.+.+++-+ +.... .....+.++++++..+++.+.+--. -+.+.+..+.++|+|++-..
T Consensus 106 ~GlkevvLTsv~~ddl~d~g-~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hn 173 (302)
T TIGR00510 106 MGLKYVVITSVDRDDLEDGG-ASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHN 173 (302)
T ss_pred CCCCEEEEEeecCCCccccc-HHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhccc
Confidence 47899999888643 32111 1235556777777666666665211 16778999999999976553
No 405
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=79.42 E-value=4.3 Score=32.40 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc----ccccCCCCHHHHHHHHHHHH
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG----SSVFGAPEPAHVISLMRKSV 108 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G----saif~~~d~~~~~~~l~~~~ 108 (115)
...++.|+++++.. +.|+.+=|=++.+.+..+.++|+|.|.++ +.+=......+.+.++++..
T Consensus 211 ~~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~ 277 (356)
T PF01070_consen 211 SLTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV 277 (356)
T ss_dssp T-SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh
Confidence 35667888888874 79999999999999999999999998887 21222334455655555543
No 406
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=79.41 E-value=14 Score=27.40 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=50.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc----CCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF----GAP 95 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif----~~~ 95 (115)
.++|||-. .-|--. ....+.++.++++++. .++.+|.+..=-|.+++.++..+|+|.+-+.-.++ +.+
T Consensus 121 aGa~yisp---yvgRi~-d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p 196 (213)
T TIGR00875 121 AGATYVSP---FVGRLD-DIGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHP 196 (213)
T ss_pred cCCCEEEe---ecchHH-HcCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCC
Confidence 67888742 223110 0112344555555443 34677888888888888888899999999986655 444
Q ss_pred CHHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKSV 108 (115)
Q Consensus 96 d~~~~~~~l~~~~ 108 (115)
-....++.+.+-+
T Consensus 197 ~t~~~~~~F~~d~ 209 (213)
T TIGR00875 197 LTDIGLERFLKDW 209 (213)
T ss_pred chHHHHHHHHHHH
Confidence 4566666665543
No 407
>PRK09932 glycerate kinase II; Provisional
Probab=79.38 E-value=32 Score=27.94 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=42.3
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
.+++.+ ...|+|+ +-+--++.|...-...-.+.++.+.+ ++|+.+..|--.++...+.+.|.+.+.
T Consensus 277 ~l~~~l---~~ADlVI--TGEG~~D~Qt~~GK~p~~Va~~A~~~-~~Pvi~i~G~~~~~~~~~~~~g~~~~~ 342 (381)
T PRK09932 277 NLEQAV---QGAALVI--TGEGRIDSQTAGGKAPLGVASVAKQF-NVPVIGIAGVLGDGVEVVHQYGIDAVF 342 (381)
T ss_pred ChHHHh---ccCCEEE--ECCCcccccccCCccHHHHHHHHHHc-CCCEEEEecccCCChHHHHhcCceEEE
Confidence 456667 7789764 44445778887655555666665553 677666555445556778888876543
No 408
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=79.27 E-value=28 Score=27.10 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=58.2
Q ss_pred CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625 10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI 85 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i 85 (115)
.|..+...++++. -++|.+=+ .++|--|.+.+ .--+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-|
T Consensus 155 yT~peeA~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p--~L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 155 YADPAECKHLVEA-TGIDCLAPALGSVHGPYKGEP--NLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCCHHHHHHHHHH-hCCCEEEEeecccccCcCCCC--ccCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5888888888854 48897643 33454455433 23456777777764 79999888 578899999999999999
Q ss_pred EEccccc
Q 033625 86 VAGSSVF 92 (115)
Q Consensus 86 v~Gsaif 92 (115)
=+++.+.
T Consensus 231 Ni~T~l~ 237 (285)
T PRK07709 231 NVNTENQ 237 (285)
T ss_pred EeChHHH
Confidence 9998874
No 409
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=79.16 E-value=14 Score=23.78 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
+.+..+.+.+.+.+.+ ...|+|.+-+.... . ...++.+.++++..+ ++++++ ||.-....++. ..+|++
T Consensus 33 l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~-----~-~~~~~~~~~~~~~~p~~~~ivv-GG~~~t~~~~~--~~~d~~ 102 (125)
T cd02065 33 LGVDVPPEEIVEAAKE-EDADVVGLSALSTT-----H-MEAMKLVIEALKELGIDIPVVV-GGAHPTADPEE--PKVDAV 102 (125)
T ss_pred cCCCCCHHHHHHHHHH-cCCCEEEEecchHh-----H-HHHHHHHHHHHHhcCCCCeEEE-eCCcCCccccc--ccccee
Confidence 4566677666666644 57998877543322 1 134555677777666 665555 55444444443 578999
Q ss_pred EEccc
Q 033625 86 VAGSS 90 (115)
Q Consensus 86 v~Gsa 90 (115)
+.|-.
T Consensus 103 ~~Ge~ 107 (125)
T cd02065 103 VIGEG 107 (125)
T ss_pred eeCCe
Confidence 99944
No 410
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.15 E-value=8 Score=27.69 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEc---CCChhhHHHHHHcCCCEEEEc
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDG---GLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dG---GI~~~ni~~l~~~Gad~iv~G 88 (115)
+..++-++++++.+++..+.+|= +.-...++.+.++|||.+++-
T Consensus 37 ~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 37 NEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 44566788888776655555432 222236888999999988744
No 411
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=79.06 E-value=14 Score=30.21 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHH-HHH--cCCCEEEEcc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AAS--AGANCIVAGS 89 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~-l~~--~Gad~iv~Gs 89 (115)
...|.|.+-+..+.+ +..++..+.+|+.+|+++ ++.||......++ +.+ .++|.+|.|-
T Consensus 67 ~~~Dlv~is~~t~~~------~~~~~ia~~iK~~~p~~~-vv~GG~h~t~~pe~~l~~~~~vD~Vv~GE 128 (472)
T TIGR03471 67 KDYDLVVLHTSTPSF------PSDVKTAEALKEQNPATK-IGFVGAHVAVLPEKTLKQGPAIDFVCRRE 128 (472)
T ss_pred cCCCEEEEECCCcch------HHHHHHHHHHHHhCCCCE-EEEECCCcccCHHHHHhcCCCeeEEEeCc
Confidence 567988775443332 345566777777777774 5556666555543 443 3689999883
No 412
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=79.02 E-value=22 Score=27.67 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCcE---EEEcCCCh-hhHHHHHHcCCCEEEEcccccC
Q 033625 48 MDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 48 ~~ki~~l~~~~~~~~i---~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
.+.++++.+..+ .|+ ...||-++ -++++|.+.|++.++.|...+.
T Consensus 186 ~e~i~~~~~~i~-~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 186 LEEFRQFAKAVK-VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFR 234 (285)
T ss_pred HHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHH
Confidence 344555555543 566 34456555 3799999999999999988765
No 413
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=78.80 E-value=14 Score=28.01 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=39.7
Q ss_pred HhHHHhHhCCCCCCEEEEE--eeeCCCCCcccchh---HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 14 EEVYPLVEGANPVEMVLVM--TVEPGFGGQKFMPE---MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm--~v~pG~~gq~~~~~---~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+....+++ .++|+|=|. +.+||.....-..+ ....++.+++.. ++|+.+|=- +++.+...++.|+|++=..
T Consensus 27 ~~a~~~~~--~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~-~~~vi~~al~~G~~iINsi 102 (257)
T TIGR01496 27 AHAERMLE--EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTY-RAEVARAALEAGADIINDV 102 (257)
T ss_pred HHHHHHHH--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCC-CHHHHHHHHHcCCCEEEEC
Confidence 34444442 578888774 34566432221112 333344444332 577777755 6666666666677766655
Q ss_pred ccc
Q 033625 89 SSV 91 (115)
Q Consensus 89 sai 91 (115)
++.
T Consensus 103 s~~ 105 (257)
T TIGR01496 103 SGG 105 (257)
T ss_pred CCC
Confidence 543
No 414
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=78.78 E-value=26 Score=27.41 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=48.5
Q ss_pred eEEEecCCCCHH--hHHHhHhCCCCCCEEEEEee----eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC----hh
Q 033625 3 PGVALKPGTSVE--EVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG----PS 72 (115)
Q Consensus 3 ~Glal~p~t~~~--~~~~~~~~~~~vD~vlvm~v----~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~----~~ 72 (115)
+++.++..++.+ .+...+++ .++|++-+=.- .|+..|........+.++.+++.. ++|+.+==..+ .+
T Consensus 102 vi~si~g~~~~~~~~~a~~~~~-~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~ 179 (325)
T cd04739 102 VIASLNGVSAGGWVDYARQIEE-AGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAH 179 (325)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHH
Confidence 355666655532 23333333 25899876332 234333333233445566666653 57777653333 34
Q ss_pred hHHHHHHcCCCEEEEcccc
Q 033625 73 TIAEAASAGANCIVAGSSV 91 (115)
Q Consensus 73 ni~~l~~~Gad~iv~Gsai 91 (115)
.++.+.++|+|.+++....
T Consensus 180 ~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 180 MAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred HHHHHHHcCCCeEEEEcCc
Confidence 5566789999999987554
No 415
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=78.67 E-value=17 Score=27.17 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=45.7
Q ss_pred HhHHHhHhCCCCCCEEEEEe--eeCCCCCcccch-------------hHHHHHHHHHhhCCCCcEEEEcCCC-------h
Q 033625 14 EEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMMDKVRSLRNRYPSLDIEVDGGLG-------P 71 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~-------------~~~~ki~~l~~~~~~~~i~~dGGI~-------~ 71 (115)
+.++.+. + .++|++=+.- .+|=.+|.-... ..++-++++|+.. ++|+.+-+=.| .
T Consensus 18 ~~~~~l~-~-~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~ 94 (242)
T cd04724 18 EILKALV-E-AGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYGLE 94 (242)
T ss_pred HHHHHHH-H-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhCHH
Confidence 4444544 2 4799987652 223344433221 4566677777654 67877766666 4
Q ss_pred hhHHHHHHcCCCEEEEc
Q 033625 72 STIAEAASAGANCIVAG 88 (115)
Q Consensus 72 ~ni~~l~~~Gad~iv~G 88 (115)
+-++.+.++|+|.+++-
T Consensus 95 ~fi~~~~~aG~~giiip 111 (242)
T cd04724 95 RFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHHHHHHCCCcEEEEC
Confidence 45788999999999875
No 416
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=78.41 E-value=23 Score=25.95 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=39.8
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs 89 (115)
.++..+-+=.-. +...+.|+.+++.++. +.|-+=.=++.+.++...++|||+++++.
T Consensus 34 gGi~~iEvt~~~---------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 34 AGFRAIEIPLNS---------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred CCCCEEEEeCCC---------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 467777653222 2355678888877653 44555445689999999999999999874
No 417
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=78.40 E-value=13 Score=29.97 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=36.6
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE--EcCCChhhHHH-HHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV--DGGLGPSTIAE-AASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~--dGGI~~~ni~~-l~~~Gad~iv~G 88 (115)
++.|.+ .+|.+.+..-.++..++|.+||+..+..||.+ -.|-..+.+.. +.++|+|+|++.
T Consensus 171 ~g~~~i----SP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItID 234 (368)
T PF01645_consen 171 PGVDLI----SPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITID 234 (368)
T ss_dssp TT--EE------SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE
T ss_pred CCCccc----cCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEe
Confidence 345554 34444444455778888999999887777652 33445666666 789999999986
No 418
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=78.28 E-value=24 Score=28.97 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=40.7
Q ss_pred CcEEEEcCCChhhHHHH-HHcCCCEEEEc-ccccCC-CCHHHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPSTIAEA-ASAGANCIVAG-SSVFGA-PEPAHVISLMRKSVEDA 111 (115)
Q Consensus 61 ~~i~~dGGI~~~ni~~l-~~~Gad~iv~G-saif~~-~d~~~~~~~l~~~~~~~ 111 (115)
+-=+..||+++..++++ ...|.|++..- .+|+.. +.+++-++.+|+.++.+
T Consensus 338 ~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 391 (414)
T cd08206 338 VFPVASGGLHPGRMPALIEILGDDVILQFGGGTHGHPDGPAAGAKANRQALEAW 391 (414)
T ss_pred cEEecCCccChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHH
Confidence 44678999999999985 77899987654 679986 46888888999887653
No 419
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=78.22 E-value=28 Score=28.67 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCCCEEEEEeeeCCCCCcc-cchhHHHHHHHH-Hhh---CCCCcEEEEcCCChhhHHHH-HHcC-CCEE-EEcccccCCC
Q 033625 24 NPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSL-RNR---YPSLDIEVDGGLGPSTIAEA-ASAG-ANCI-VAGSSVFGAP 95 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l-~~~---~~~~~i~~dGGI~~~ni~~l-~~~G-ad~i-v~Gsaif~~~ 95 (115)
.++|.+. .|+++|.- +..+....+... ++- .+.+-=+..||+++..++.+ ...| .|++ -.|..++..+
T Consensus 310 aGaD~ih----~~~~gg~~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~SGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHP 385 (424)
T cd08208 310 AGLDVVI----MPGFGPRMMTPEEEVLECVIACLEPMGPIKPCLPVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHP 385 (424)
T ss_pred cCCCeee----ccCCCCCccchHHHHHHHHHHHhCcccCCCCceEecccCCCHhHHHHHHHHhCCCCEEEecCccccCCC
Confidence 5889886 36665532 222222222221 111 12344578999999999975 6788 5877 4568899864
Q ss_pred -CHHHHHHHHHHHHHHH
Q 033625 96 -EPAHVISLMRKSVEDA 111 (115)
Q Consensus 96 -d~~~~~~~l~~~~~~~ 111 (115)
.+++-++.+|+.++.+
T Consensus 386 ~G~aaGa~A~RqA~ea~ 402 (424)
T cd08208 386 MGPKAGAKSIRQAWEAI 402 (424)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 6788888888877654
No 420
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=78.17 E-value=15 Score=30.37 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=41.4
Q ss_pred HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhH-HHHHH--cCCCEEEEcc
Q 033625 13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTI-AEAAS--AGANCIVAGS 89 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni-~~l~~--~Gad~iv~Gs 89 (115)
.+.+.+.+.+ ...|.|.+-+..| ......+-++.+|+..|+. .+|.||...... .++.. .++|.+|.|-
T Consensus 52 ~~~~~~~l~~-~~pdvVgis~~t~------~~~~a~~~~~~~k~~~P~~-~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 52 DEKLVERLRA-HCPDLVLITAITP------AIYIACETLKFARERLPNA-IIVLGGIHPTFMFHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred HHHHHHHHHh-cCcCEEEEecCcc------cHHHHHHHHHHHHHHCCCC-EEEEcCCCcCcCHHHHHhcCCCccEEEeCC
Confidence 3445454422 4689988754433 1234455566677777776 456677765544 34543 3799999983
No 421
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=78.04 E-value=2.4 Score=34.98 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=31.1
Q ss_pred HHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc
Q 033625 51 VRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 51 i~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif 92 (115)
+.+....+ ++|+.+|||| +...+..-+..||+.+-+|+.+-
T Consensus 346 va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLA 387 (503)
T KOG2550|consen 346 VAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLA 387 (503)
T ss_pred HHHHHHhc-CCceeecCCcCccchhHhhhhcCchhheecceee
Confidence 34443332 7999999999 46777788899999888887664
No 422
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=77.76 E-value=28 Score=26.41 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=48.8
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
-++.+++++. ++.+|.+.+.+.+ -|..++...++....+.++... ..+++..+- .-+++....+.+.|++.+
T Consensus 157 av~ni~eI~a-v~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-~~~~~~~~~~~~~G~~~v 234 (256)
T PRK10558 157 GVDNVDAIAA-TEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-APVEADARRYLEWGATFV 234 (256)
T ss_pred HHHHHHHHhC-CCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-CCCHHHHHHHHHcCCCEE
Confidence 3477888773 3689999987643 2334444444444444444221 124555433 357888999999999999
Q ss_pred EEccc
Q 033625 86 VAGSS 90 (115)
Q Consensus 86 v~Gsa 90 (115)
++|+.
T Consensus 235 ~~~~D 239 (256)
T PRK10558 235 AVGSD 239 (256)
T ss_pred EEchH
Confidence 99964
No 423
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=77.73 E-value=9.8 Score=29.42 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCccc-------------chhHHHHHHHHHhhCCCCcEEEEcCCCh--
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKF-------------MPEMMDKVRSLRNRYPSLDIEVDGGLGP-- 71 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~-------------~~~~~~ki~~l~~~~~~~~i~~dGGI~~-- 71 (115)
+.|.++.+..+.+ .++|.+=+.- .+|-.+|-.. .+..++.++++|+....+|+..-+=.|+
T Consensus 30 ~e~s~e~i~~L~~--~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 30 LETSLEIIKTLVE--AGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred HHHHHHHHHHHHh--CCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 3455666666552 5799986643 3566665322 2567788888888878899998887776
Q ss_pred -----hhHHHHHHcCCCEEEEccccc
Q 033625 72 -----STIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 72 -----~ni~~l~~~Gad~iv~Gsaif 92 (115)
.-++.+.++|+|.+++--.-+
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP~ 133 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLPP 133 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCCh
Confidence 347789999999998864433
No 424
>PLN02535 glycolate oxidase
Probab=77.52 E-value=6.5 Score=31.64 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
.-+.+.|+.+++. .+.|+.+=|=++.+....+.++|+|.|++.
T Consensus 209 ~~tW~~i~~lr~~-~~~PvivKgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhc-cCCCEEEecCCCHHHHHHHHhcCCCEEEEe
Confidence 3467888888886 479999999999999999999999999886
No 425
>PRK10342 glycerate kinase I; Provisional
Probab=77.49 E-value=37 Score=27.59 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=42.7
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
.+++.+ ...|+|+ +-+--++.|.+.-...-.+.++.+.+ ++|+.+..|--..+...+.+.|.+.+.
T Consensus 277 ~l~~~l---~~ADLVI--TGEG~~D~QTl~GK~p~gVa~~A~~~-~vPviai~G~~~~~~~~~~~~g~~av~ 342 (381)
T PRK10342 277 NLEEHI---HDCTLVI--TGEGRIDSQSIHGKVPIGVANVAKKY-HKPVIGIAGSLTDDVGVVHQHGIDAVF 342 (381)
T ss_pred CHHHHh---ccCCEEE--ECCCcCcccccCCccHHHHHHHHHHh-CCCEEEEecccCCChHHHHhcCceEEE
Confidence 456677 7789664 44555788888766666666665553 678666555444455778888876543
No 426
>PRK05826 pyruvate kinase; Provisional
Probab=77.35 E-value=29 Score=28.86 Aligned_cols=96 Identities=10% Similarity=0.225 Sum_probs=56.9
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEcCC----------ChhhHHH---H
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDGGL----------GPSTIAE---A 77 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI----------~~~ni~~---l 77 (115)
-++.+++++ ..+|.|++..-+-|.. |..-.+...+++-+.++.. +.|+.+..=+ |..-+.. .
T Consensus 227 av~nldeI~---~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~-gKpvi~ATqmLeSM~~~p~PTRAEvsDVana 302 (465)
T PRK05826 227 AVDNIDEII---EASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREA-GKPVITATQMLESMIENPRPTRAEVSDVANA 302 (465)
T ss_pred HHHhHHHHH---HHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHc-CCCEEEECHHHHHHhhCCCCchhhhhhHHHH
Confidence 347888888 6799998644333211 2222344555554444442 5666655221 2222222 3
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625 78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111 (115)
Q Consensus 78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~ 111 (115)
.--|+|.+.+...--...-|.++++.++++.+++
T Consensus 303 v~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~a 336 (465)
T PRK05826 303 VLDGTDAVMLSGETAAGKYPVEAVEAMARICKGA 336 (465)
T ss_pred HHcCCcEEEeccccccCcCHHHHHHHHHHHHHHH
Confidence 3459999999866544578999999999887753
No 427
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=77.14 E-value=8.4 Score=26.62 Aligned_cols=50 Identities=12% Similarity=0.343 Sum_probs=37.8
Q ss_pred CcEEEEcCCChhhHHHHHHcCCCEEEEcccc-----cCCCC--HHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSV-----FGAPE--PAHVISLMRKSVED 110 (115)
Q Consensus 61 ~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsai-----f~~~d--~~~~~~~l~~~~~~ 110 (115)
+++...|-++++-+-.....|||++.++..= |...| .+..++.+++.+++
T Consensus 33 Irv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~e 89 (132)
T COG1908 33 IRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKE 89 (132)
T ss_pred EEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998877431 33333 45777777777765
No 428
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=76.79 E-value=33 Score=26.60 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHH---HHHHHhhC-CCCcEEE-EcCCChhh----HHHHHHcCCCEEEEcccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNRY-PSLDIEV-DGGLGPST----IAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~k---i~~l~~~~-~~~~i~~-dGGI~~~n----i~~l~~~Gad~iv~Gsaif~~ 94 (115)
.++|.|. ..|.+|.-+.-..-|| ++..++.. ..+|+.+ .|+.+.+. .+...+.|||.+.+..-.|..
T Consensus 37 ~Gv~gi~----~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k 112 (299)
T COG0329 37 AGVDGLV----VLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNK 112 (299)
T ss_pred cCCCEEE----ECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence 5789885 4577776543222233 33333332 3466555 66664433 334578999999999998887
Q ss_pred CCHHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVED 110 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~~ 110 (115)
++..+..+.++.+.+.
T Consensus 113 ~~~~gl~~hf~~ia~a 128 (299)
T COG0329 113 PSQEGLYAHFKAIAEA 128 (299)
T ss_pred CChHHHHHHHHHHHHh
Confidence 8877777777766554
No 429
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.76 E-value=20 Score=28.53 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccc---cC----CCCH
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV---FG----APEP 97 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsai---f~----~~d~ 97 (115)
++|.|=+. .|.. .+..++.++++++..++..+.+-+-.+.+.++...++|+|.+-+.... +. ..+.
T Consensus 36 Gv~~IEvG--~p~~-----~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~ 108 (365)
T TIGR02660 36 GVDELEVG--IPAM-----GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDR 108 (365)
T ss_pred CCCEEEEe--CCCC-----CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCH
Confidence 67777552 3432 234456778887766667777777778999999999999987655322 21 1245
Q ss_pred HHHHHHHHHHHHHHh
Q 033625 98 AHVISLMRKSVEDAQ 112 (115)
Q Consensus 98 ~~~~~~l~~~~~~~~ 112 (115)
.+.++.+.+.++.++
T Consensus 109 ~e~l~~~~~~i~~ak 123 (365)
T TIGR02660 109 AWVLERLARLVSFAR 123 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666665544
No 430
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=76.67 E-value=37 Score=27.21 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=54.9
Q ss_pred CCCHHhHHHhHhCC---CCCCEE--EEEeeeCCCC-C-cccchhHHHHHHHH-HhhC-----CCCcEEEEc--CCChhhH
Q 033625 10 GTSVEEVYPLVEGA---NPVEMV--LVMTVEPGFG-G-QKFMPEMMDKVRSL-RNRY-----PSLDIEVDG--GLGPSTI 74 (115)
Q Consensus 10 ~t~~~~~~~~~~~~---~~vD~v--lvm~v~pG~~-g-q~~~~~~~~ki~~l-~~~~-----~~~~i~~dG--GI~~~ni 74 (115)
.|..+...++++.- -++|.+ =+.++|--|. + .+...+.+++|++. ++.. .++|++.=| |+..+.+
T Consensus 182 yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i 261 (345)
T cd00946 182 YTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEI 261 (345)
T ss_pred CCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHH
Confidence 47888888888320 156754 3445665564 2 23444555555332 4443 158888877 5889999
Q ss_pred HHHHHcCCCEEEEccccc
Q 033625 75 AEAASAGANCIVAGSSVF 92 (115)
Q Consensus 75 ~~l~~~Gad~iv~Gsaif 92 (115)
+...+.|+.-+=+++.+.
T Consensus 262 ~kai~~GI~KiNi~T~l~ 279 (345)
T cd00946 262 REAISYGVVKMNIDTDTQ 279 (345)
T ss_pred HHHHHcCCeeEEeCcHHH
Confidence 999999999999998764
No 431
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=76.43 E-value=23 Score=24.67 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=46.6
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc-ccCCCCHHHHHHHHHHHHHH
Q 033625 41 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS-VFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 41 q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa-if~~~d~~~~~~~l~~~~~~ 110 (115)
....+.+++.+...+++...+...+.|+-..+..+++...|+|-++.... -+...++....+.+.+.+++
T Consensus 11 g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~ 81 (168)
T cd01715 11 GELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKK 81 (168)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHh
Confidence 34666777777777766445667777776666688888999998887632 33334566666666666553
No 432
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=75.98 E-value=5.8 Score=33.25 Aligned_cols=88 Identities=15% Similarity=0.256 Sum_probs=54.4
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCccc-------chhHHHHHHHHHhhCCCCcEEEE--cC-----------CChhh
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKF-------MPEMMDKVRSLRNRYPSLDIEVD--GG-----------LGPST 73 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-------~~~~~~ki~~l~~~~~~~~i~~d--GG-----------I~~~n 73 (115)
+...+++ +.+|-+.+-+++-+ +|..| .++.+++|+.+++..++.++..- |- +-...
T Consensus 27 ~d~l~ia---~~ld~~G~~siE~~-GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~f 102 (499)
T PRK12330 27 EDMVGAC---EDIDNAGYWSVECW-GGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRF 102 (499)
T ss_pred HHHHHHH---HHHHhcCCCEEEec-CCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHH
Confidence 4444444 44555666666655 44434 36789999999998887776533 22 44566
Q ss_pred HHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625 74 IAEAASAGANCIVAGSSVFGAPEPAHVISLMR 105 (115)
Q Consensus 74 i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~ 105 (115)
++...++|+|+|=+..++..-++...+++..+
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk 134 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVK 134 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHH
Confidence 77888999999876655543333444444433
No 433
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=75.82 E-value=9.9 Score=30.29 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCCcEEE-EcCCChhh----HHHHHHcCC--CEEEEcccccCC
Q 033625 49 DKVRSLRNRYPSLDIEV-DGGLGPST----IAEAASAGA--NCIVAGSSVFGA 94 (115)
Q Consensus 49 ~ki~~l~~~~~~~~i~~-dGGI~~~n----i~~l~~~Ga--d~iv~Gsaif~~ 94 (115)
+.++++.+.. +.|+.+ -||.+.+. +....++|+ .+++.|+++|+.
T Consensus 231 ~~f~~~~~a~-~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~ 282 (340)
T PRK12858 231 KLFREQSDAT-DLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQD 282 (340)
T ss_pred HHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHhh
Confidence 3455554443 567555 88887754 444678999 999999999973
No 434
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=75.60 E-value=21 Score=26.88 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=47.5
Q ss_pred HHhHHHhHhCCCCCCEEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 13 VEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
++.+++++. ++.+|.+.+.+- .-|..++...++..+-++++++.. ......+.. -+++....+.+.|++.++
T Consensus 152 v~n~~eI~a-~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~-~~~~~~~~~~~~G~~~~~ 229 (249)
T TIGR02311 152 LDNLEEIAA-VEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT-ADPKLARQYLKLGALFVA 229 (249)
T ss_pred HHHHHHHHC-CCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC-CCHHHHHHHHHcCCCEEE
Confidence 477788773 478999998763 235444444444344443333321 134444433 468999999999999999
Q ss_pred Eccc
Q 033625 87 AGSS 90 (115)
Q Consensus 87 ~Gsa 90 (115)
+|+.
T Consensus 230 ~~~D 233 (249)
T TIGR02311 230 VGVD 233 (249)
T ss_pred EchH
Confidence 9964
No 435
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=75.58 E-value=22 Score=27.03 Aligned_cols=55 Identities=25% Similarity=0.504 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhCCCCcEEE-------Ec-CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 47 MMDKVRSLRNRYPSLDIEV-------DG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 47 ~~~ki~~l~~~~~~~~i~~-------dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
..+.|.++++.++ ..+.+ -| |++++++..|..+|+|++.+|--.|...+..+.++
T Consensus 17 ~~~~l~~lk~~~~-~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTlGNH~fD~gel~~~l~ 79 (255)
T cd07382 17 VKEHLPKLKKEYK-IDFVIANGENAAGGKGITPKIAKELLSAGVDVITMGNHTWDKKEILDFID 79 (255)
T ss_pred HHHHHHHHHHHCC-CCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEecccccCcchHHHHHh
Confidence 3344666666542 22333 34 69999999999999999999966776654444433
No 436
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=75.50 E-value=7.5 Score=26.34 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=36.7
Q ss_pred CcEEEEcCCChhhHHHHHHcCCCEEEEccc-----ccCCCC--HHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSS-----VFGAPE--PAHVISLMRKSVED 110 (115)
Q Consensus 61 ~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa-----if~~~d--~~~~~~~l~~~~~~ 110 (115)
+++-..|-|+++.+-...+.|||.+.+... -|...+ .++.+..+++.+++
T Consensus 32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~ 88 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEE 88 (124)
T ss_pred EEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999533 232222 35667777777764
No 437
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=75.50 E-value=24 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=24.5
Q ss_pred hhHHHHHHcCCCEEEEcccccCCCC--HHHHHHHHHHHHHH
Q 033625 72 STIAEAASAGANCIVAGSSVFGAPE--PAHVISLMRKSVED 110 (115)
Q Consensus 72 ~ni~~l~~~Gad~iv~Gsaif~~~d--~~~~~~~l~~~~~~ 110 (115)
+.++.+.++|||.+.+....+...+ .++..+.+++..+.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 4566778999999998755443222 45555555555443
No 438
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=75.29 E-value=23 Score=27.03 Aligned_cols=101 Identities=12% Similarity=0.190 Sum_probs=64.1
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC-CCCcc---cchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIA 75 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG-~~gq~---~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~ 75 (115)
++.|-++|+ .+.++...+ -++|+|= .+.| |+... -....++++....+. ..++.+.+=-|+|.+|+.
T Consensus 125 ~VSLFiDP~--~~qi~~A~~--~GAd~VE---LhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLny~Nv~ 197 (237)
T TIGR00559 125 EVSLFIDAD--KDQISAAAE--VGADRIE---IHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNAGHGLNYHNVK 197 (237)
T ss_pred EEEEEeCCC--HHHHHHHHH--hCcCEEE---EechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHH
Confidence 566666666 333333221 4789886 4555 33211 112235555554433 247889999999999999
Q ss_pred HHHHc-C-CCEEEEcccccCCC---CHHHHHHHHHHHHH
Q 033625 76 EAASA-G-ANCIVAGSSVFGAP---EPAHVISLMRKSVE 109 (115)
Q Consensus 76 ~l~~~-G-ad~iv~Gsaif~~~---d~~~~~~~l~~~~~ 109 (115)
.+.+. + .+-+..|.+|+... -..++++++++.++
T Consensus 198 ~i~~~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 198 YFAEILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred HHHhCCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 99666 4 68899998887532 45788888887764
No 439
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=74.83 E-value=11 Score=27.80 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=44.0
Q ss_pred CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CC-CCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625 23 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 23 ~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~ 94 (115)
.+.+...++|+-.+-.....-....++.+.++++. .. .-.-.+..|.|.+--. -.+.|++-+=.|++||.+
T Consensus 153 ~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lS~G~t~~~~~-a~~~g~tevR~G~~if~d 228 (229)
T TIGR00044 153 LKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIKQDSPFGTIDTLSMGMSDDFEE-AIAAGATMVRIGTAIFGA 228 (229)
T ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEeeeCcHhHHH-HHHCCCCEEECChHHcCC
Confidence 36788999987766533322223444555555432 21 1234677777777433 455899999999999974
No 440
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=74.77 E-value=10 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCChhhHHHHHHcC--CCEEEEcccccCCC
Q 033625 59 PSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGAP 95 (115)
Q Consensus 59 ~~~~i~~dGGI~~~ni~~l~~~G--ad~iv~Gsaif~~~ 95 (115)
+++.|.+.+|++++.+.++.+.| +|.+=+|+.+..+.
T Consensus 277 ~~~~Iv~Sdgld~~~i~~l~~~g~~~d~fGvGt~L~~~~ 315 (327)
T cd01570 277 TKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQ 315 (327)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCeeEEEecCccccCCC
Confidence 56889999999999999999888 78888889988754
No 441
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=74.70 E-value=29 Score=28.41 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=54.0
Q ss_pred CCCCEEEEEeeeCCCCCc-ccchhHHHH-HHHHHhh---CCCCcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCC-C
Q 033625 24 NPVEMVLVMTVEPGFGGQ-KFMPEMMDK-VRSLRNR---YPSLDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGA-P 95 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq-~~~~~~~~k-i~~l~~~---~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~-~ 95 (115)
.++|.+.+ |++.|. .+.++.... .+.+++- .+.+-=+..||+++..++.+ ...|-|++.. |.+|+.. +
T Consensus 287 aGaD~~~~----~~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~D~il~~GGgi~gHp~ 362 (407)
T PRK09549 287 AGADFSLF----PSPYGSVALEKEEALAIAKELTEDDDPFKRSFPVPSAGIHPGLVPLLIRDFGKDVVINAGGGIHGHPN 362 (407)
T ss_pred cCCCcccc----CCCcCCcCCCHHHHHHHHHHHhccccCCCccEEeecCCCChhHHHHHHHHhCCceEEecCCceecCCC
Confidence 57888753 333332 223333222 3333332 12344678999999999985 6789997665 5779986 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKSVEDA 111 (115)
Q Consensus 96 d~~~~~~~l~~~~~~~ 111 (115)
.+++-++.+|+.++.+
T Consensus 363 G~~aGa~A~rqA~ea~ 378 (407)
T PRK09549 363 GAQGGGKAFRAAIDAV 378 (407)
T ss_pred CchhHHHHHHHHHHHH
Confidence 6888889999887754
No 442
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=74.61 E-value=29 Score=28.96 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=39.8
Q ss_pred CcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCC-CCHHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGA-PEPAHVISLMRKSVED 110 (115)
Q Consensus 61 ~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~-~d~~~~~~~l~~~~~~ 110 (115)
.--+..||+++..++.+ ...|-|++.. |.+|+.. +.+++-++.+|+.++.
T Consensus 367 ~~Pv~SGG~~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea 419 (468)
T PRK04208 367 VFPVASGGIHPGHMPALLDIFGDDVVLQFGGGTHGHPDGTAAGATANRVALEA 419 (468)
T ss_pred ceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHH
Confidence 34578999999999985 7789997655 4779986 4688888888888775
No 443
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=74.52 E-value=29 Score=28.48 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=40.3
Q ss_pred CcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCCC-CHHHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGAP-EPAHVISLMRKSVEDA 111 (115)
Q Consensus 61 ~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~~-d~~~~~~~l~~~~~~~ 111 (115)
+--+..||+++..++.+ ...|-|++.. |.+|+..+ .+++-++.+|+.++.+
T Consensus 336 ~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 389 (412)
T cd08213 336 VFPVASGGLHPGLVPDVIDILGKDIVIQVGGGVHGHPDGTRAGAKAVRQAIEAA 389 (412)
T ss_pred ceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHH
Confidence 44678999999999985 7789997665 47799864 6788888898877653
No 444
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=74.40 E-value=29 Score=25.22 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCCcEEEEcCCChhhH---HHHHHcCCCEEEEcccc
Q 033625 50 KVRSLRNRYPSLDIEVDGGLGPSTI---AEAASAGANCIVAGSSV 91 (115)
Q Consensus 50 ki~~l~~~~~~~~i~~dGGI~~~ni---~~l~~~Gad~iv~Gsai 91 (115)
-+..+++.++++++.+|-+.+.-|- ..+.+.|++.+++...+
T Consensus 26 ~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 26 LLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPEL 70 (233)
T ss_pred HHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccC
Confidence 3566677788999999999876654 55789999999998777
No 445
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=74.29 E-value=13 Score=29.48 Aligned_cols=71 Identities=20% Similarity=0.429 Sum_probs=47.3
Q ss_pred ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---E------------cC--
Q 033625 7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---D------------GG-- 68 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---d------------GG-- 68 (115)
++|...-|.+.+...| ..++|+|+ |.||.. -++-|+++++.. ++|+.+ . |=
T Consensus 214 mdpan~~eAlre~~~D~~EGAD~lM---VKPal~-------YLDIi~~~k~~~-~~PvaaYqVSGEYaMikaAa~~G~id 282 (314)
T cd00384 214 MDPANRREALREVELDIEEGADILM---VKPALA-------YLDIIRDVRERF-DLPVAAYNVSGEYAMIKAAAKNGWID 282 (314)
T ss_pred CCCCCHHHHHHHHHhhHHhCCCEEE---EcCCch-------HHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCcc
Confidence 3566666777666655 35899997 788843 455677777665 566553 2 22
Q ss_pred ---CChhhHHHHHHcCCCEEEEc
Q 033625 69 ---LGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 69 ---I~~~ni~~l~~~Gad~iv~G 88 (115)
+-.|++-.++.+|||+|+.=
T Consensus 283 ~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 283 EERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred HHHHHHHHHHHHHhcCCCEEEee
Confidence 34567777899999998754
No 446
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=74.22 E-value=15 Score=31.31 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=65.1
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeC--------------CCCCcccchhHHHHHHHHHhh--CCCCcEEE
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP--------------GFGGQKFMPEMMDKVRSLRNR--YPSLDIEV 65 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~p--------------G~~gq~~~~~~~~ki~~l~~~--~~~~~i~~ 65 (115)
.+|+.+-...-+..++.++ ..+|++-+.+-+- ++-++.+.|..+..++++.+. ..++|+.+
T Consensus 425 ~~g~mIE~p~a~~~~d~i~---~~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~v 501 (575)
T PRK11177 425 EIGVMVETPAAAVIARHLA---KEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGM 501 (575)
T ss_pred EEEEEEeCHHHHHhHHHHH---hhCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3566666666667888888 8899998876432 234677888888888877553 24789999
Q ss_pred EcCC--ChhhHHHHHHcCCCEEEEccc
Q 033625 66 DGGL--GPSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 66 dGGI--~~~ni~~l~~~Gad~iv~Gsa 90 (115)
-|-+ ++.-++.|...|.|-+.|...
T Consensus 502 CGe~A~dp~~~~lLlglGi~~lSm~p~ 528 (575)
T PRK11177 502 CGELAGDERATLLLLGMGLDEFSMSAI 528 (575)
T ss_pred eCCCCCCHHHHHHHHHCCCCeEEECHH
Confidence 9876 678888999999999999844
No 447
>PRK01060 endonuclease IV; Provisional
Probab=74.16 E-value=34 Score=25.48 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=62.7
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC-CCcccchhHHHHHHHHHhhCCCCc---EEEEcC-------C
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKFMPEMMDKVRSLRNRYPSLD---IEVDGG-------L 69 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~---i~~dGG-------I 69 (115)
|++|.-.++.-+++..-+.+.+ -++|.|-+..-.|.+ .+..+.+..++.++++.+.+ ++. +.+-+. -
T Consensus 2 ~~~g~~~~~~~~~~~~l~~~~~-~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~-gl~~~~~~~h~~~~~nl~~~ 79 (281)
T PRK01060 2 KLIGAHVSAAGGLEGAVAEAAE-IGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKY-GISPEDILVHAPYLINLGNP 79 (281)
T ss_pred CeEEEeeecCCCHHHHHHHHHH-cCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc-CCCCCceEEecceEecCCCC
Confidence 6789999998888766666644 589999988777754 23344555556666555432 333 443332 1
Q ss_pred Ch-----------hhHHHHHHcCCCEEEEcccc-cCCCCHHHHHHHHHHHHH
Q 033625 70 GP-----------STIAEAASAGANCIVAGSSV-FGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 70 ~~-----------~ni~~l~~~Gad~iv~Gsai-f~~~d~~~~~~~l~~~~~ 109 (115)
++ ..+....+.|+..+++-+.- .......+..+.+.+.++
T Consensus 80 d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~ 131 (281)
T PRK01060 80 NKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLN 131 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHH
Confidence 11 12244568899998886542 222222335555555544
No 448
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=74.12 E-value=37 Score=25.88 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHH---HHHHHhhCC-CCcEEE-EcCCCh-hhH---HHHHHcCCCEEEEcccccCCC
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNRYP-SLDIEV-DGGLGP-STI---AEAASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~k---i~~l~~~~~-~~~i~~-dGGI~~-~ni---~~l~~~Gad~iv~Gsaif~~~ 95 (115)
++|.++++ |.+|+-+.-..-|| ++...+... .+|+.+ .|+-+. +.+ +...++|||.+.+..-.|-..
T Consensus 35 Gv~gi~~~----GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~ 110 (288)
T cd00954 35 GVDGLYVN----GSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKF 110 (288)
T ss_pred CCCEEEEC----cCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 68887654 66665443222233 333333332 355544 333322 233 456889999999987766555
Q ss_pred CHHHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKSVE 109 (115)
Q Consensus 96 d~~~~~~~l~~~~~ 109 (115)
+..+-.+-+++..+
T Consensus 111 ~~~~i~~~~~~v~~ 124 (288)
T cd00954 111 SFEEIKDYYREIIA 124 (288)
T ss_pred CHHHHHHHHHHHHH
Confidence 65555555555544
No 449
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=74.09 E-value=22 Score=25.49 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=45.1
Q ss_pred CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-C--CcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-S--LDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~--~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
..+.++.+.+ .++|+|.+-..+.-|.. .+ +..++.++++++..+ . +++.+.+ ..+.+..+.++|+|++.+-
T Consensus 18 ~~~~~~~~~~--~G~~~i~l~~~d~~~~~-~~-~~~~~~~~~i~~~~~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 18 LGEEVKAVEA--AGADWIHVDVMDGHFVP-NL-TIGPPVVEAIRKVTKLPLDVHLMVEN--PDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHH--cCCCEEEEeCccCCcCC-Cc-CcCHHHHHHHHhcCCCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEe
Confidence 3455666661 47999998422211111 00 124556666665543 1 3345553 3446778889999996554
Q ss_pred ccccCCCCHHHHHHHHH
Q 033625 89 SSVFGAPEPAHVISLMR 105 (115)
Q Consensus 89 saif~~~d~~~~~~~l~ 105 (115)
-.- .+.+.+.++.++
T Consensus 92 ~~~--~~~~~~~~~~~~ 106 (220)
T PRK05581 92 VEA--SEHIHRLLQLIK 106 (220)
T ss_pred ecc--chhHHHHHHHHH
Confidence 321 234444444443
No 450
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=73.66 E-value=27 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc----ccccCCCCHHHHHHHHHH
Q 033625 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG----SSVFGAPEPAHVISLMRK 106 (115)
Q Consensus 47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G----saif~~~d~~~~~~~l~~ 106 (115)
..+.|+++++.. ++|+.+=|=.+.+.+..+.++|+|.|+++ +-++..+..-+.+.++++
T Consensus 216 ~w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 216 SPRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE 278 (367)
T ss_pred CHHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHH
Confidence 456788887763 68999888777899999999999988665 224443333344444443
No 451
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=73.63 E-value=44 Score=26.61 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=42.5
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
.++.-+.+.+-.+-.. .-.....+.++.+++..+++.+.+ |.++.+.++.|+++|+|.+.++
T Consensus 119 ~Gv~~i~lvgGe~p~~--~~~e~l~~~i~~Ik~~~p~i~i~~-g~lt~e~l~~Lk~aGv~r~~i~ 180 (371)
T PRK09240 119 LGFEHILLLTGEHEAK--VGVDYIRRALPIAREYFSSVSIEV-QPLSEEEYAELVELGLDGVTVY 180 (371)
T ss_pred CCCCEEEEeeCCCCCC--CCHHHHHHHHHHHHHhCCCceecc-CCCCHHHHHHHHHcCCCEEEEE
Confidence 3688886654222110 122445555677776666666664 8899999999999999999987
No 452
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=73.62 E-value=21 Score=28.63 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=50.1
Q ss_pred CCCCEEEEEeeeCCCC-CcccchhHHHHHHHH-HhhC---CCCcEEEEcCCChhhHHHH-HHcCCCEEEEc-ccccCCCC
Q 033625 24 NPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSL-RNRY---PSLDIEVDGGLGPSTIAEA-ASAGANCIVAG-SSVFGAPE 96 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l-~~~~---~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~G-saif~~~d 96 (115)
.++|.++. |... +..+.++...++.+. ++.. +...=+..||++...++++ ...|.|+++.. ..|+..+|
T Consensus 276 aGad~~~~----~~~~g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~ 351 (364)
T cd08210 276 AGADAVIF----PNYGGRFGFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGD 351 (364)
T ss_pred hCCCEEEe----CCCcCCccCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCC
Confidence 57897743 3322 334555555555442 1111 1122346789999999987 45598877655 66998876
Q ss_pred -HHHHHHHHHHH
Q 033625 97 -PAHVISLMRKS 107 (115)
Q Consensus 97 -~~~~~~~l~~~ 107 (115)
+++-++.+++.
T Consensus 352 g~~ag~~a~rqa 363 (364)
T cd08210 352 DLTENTRAFVEA 363 (364)
T ss_pred ChHHHHHHHHhh
Confidence 88888888864
No 453
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=73.54 E-value=19 Score=22.24 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~G 88 (115)
...|.+++-.-.|+. ..++-++++++..++.++.+-+. -+.+....+.++|++.++.-
T Consensus 42 ~~~d~iiid~~~~~~-------~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k 100 (112)
T PF00072_consen 42 HPPDLIIIDLELPDG-------DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSK 100 (112)
T ss_dssp STESEEEEESSSSSS-------BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEES
T ss_pred cCceEEEEEeeeccc-------cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 458888865545553 34455777777777888776664 45567778889999988543
No 454
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=73.51 E-value=29 Score=28.28 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=53.6
Q ss_pred CCCCEEEEEeeeCCCCCc-ccchhHHHHHHH-HHhh--CCCCcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCCC-C
Q 033625 24 NPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRS-LRNR--YPSLDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGAP-E 96 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~-l~~~--~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~~-d 96 (115)
.++|.+.+ |++.|. .+.++....+.+ +++- .+.+-=+..||+++..++++ ...|-|++.. |.+|+..+ .
T Consensus 277 aGaD~~~~----~~~~Gk~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G 352 (391)
T cd08209 277 AGADAVLF----PSPYGSVALSKEEALAIAEALRRGGAFKGVFPVPSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDG 352 (391)
T ss_pred cCCCcccc----CCccCCcCCCHHHHHHHHHHHhCcCCCCCceEecCCCCChhHHHHHHHHhCCceEEecCcceecCCCC
Confidence 57888853 443332 223333333332 2221 12344678999999999986 6679997765 47799864 6
Q ss_pred HHHHHHHHHHHHHHH
Q 033625 97 PAHVISLMRKSVEDA 111 (115)
Q Consensus 97 ~~~~~~~l~~~~~~~ 111 (115)
+++-++.+|+.++.+
T Consensus 353 ~~aGa~A~rqA~ea~ 367 (391)
T cd08209 353 AAAGVRAFREAIDAV 367 (391)
T ss_pred chhHHHHHHHHHHHH
Confidence 788889999877643
No 455
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=73.46 E-value=14 Score=29.08 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=43.3
Q ss_pred CCCCEEEEEeeeCC----CCCcccchhHHHHHHHHHhhCCCCcEEEE----cCCChhhHHHHHHcCCCEEE
Q 033625 24 NPVEMVLVMTVEPG----FGGQKFMPEMMDKVRSLRNRYPSLDIEVD----GGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 24 ~~vD~vlvm~v~pG----~~gq~~~~~~~~ki~~l~~~~~~~~i~~d----GGI~~~ni~~l~~~Gad~iv 86 (115)
-+++||.|-+|.-. .+-|.|. +-|+.+|+.+|+..|++- +| +.+.+..+.++|.|++.
T Consensus 112 mgLkyVViTsVdRDDL~DGGA~hfa----~~i~~Ire~~P~t~iEvL~PDF~G-~~~al~~v~~~~pdV~n 177 (306)
T COG0320 112 MGLKYVVITSVDRDDLPDGGAQHFA----ECIRAIRELNPQTTIEVLTPDFRG-NDDALEIVADAGPDVFN 177 (306)
T ss_pred hCCCeEEEEeeccccccccchHHHH----HHHHHHHhhCCCceEEEeCccccC-CHHHHHHHHhcCcchhh
Confidence 37999999998743 2334443 346777888888887763 45 89999999999999875
No 456
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=73.40 E-value=28 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=24.4
Q ss_pred ChhhHHHHHHcCCCEEEEcccccCC---CCHHHHHHHHHH
Q 033625 70 GPSTIAEAASAGANCIVAGSSVFGA---PEPAHVISLMRK 106 (115)
Q Consensus 70 ~~~ni~~l~~~Gad~iv~Gsaif~~---~d~~~~~~~l~~ 106 (115)
+.+.+.++.++|||++++....... +...+.++.+++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 6678999999999988877654322 344444444443
No 457
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=73.30 E-value=14 Score=29.35 Aligned_cols=71 Identities=20% Similarity=0.440 Sum_probs=47.3
Q ss_pred ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625 7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG 70 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~ 70 (115)
++|...-|.+.+...| ..++|+|+ |.||.. -++-|+++++.. ++|+.+ -|=++
T Consensus 222 mdp~n~~eAlre~~~D~~EGAD~lM---VKPal~-------YLDIi~~~k~~~-~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 222 MDPANRREALREVALDIEEGADMVM---VKPALP-------YLDIIRRVKDEF-NLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CCCCCHHHHHHHHHhhHHhCCCEEE---EcCCch-------HHHHHHHHHhcC-CCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 4566666777666655 25899997 788733 455677777765 477654 24455
Q ss_pred h-----hhHHHHHHcCCCEEEEc
Q 033625 71 P-----STIAEAASAGANCIVAG 88 (115)
Q Consensus 71 ~-----~ni~~l~~~Gad~iv~G 88 (115)
+ |.+-.++.+|||+|+.=
T Consensus 291 ~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 291 EERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred HHHHHHHHHHHHHhcCCCEEEec
Confidence 4 45556789999998754
No 458
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=73.24 E-value=35 Score=25.68 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=50.4
Q ss_pred CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC----CCEEEEc---ccccC----
Q 033625 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG----ANCIVAG---SSVFG---- 93 (115)
Q Consensus 25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G----ad~iv~G---saif~---- 93 (115)
++|+|=+ ||.. ..+...+.++.+++..++.++.+---.+.+.++...++| +|.+-+. |.++.
T Consensus 33 Gv~~iEv-----g~~~--~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~ 105 (268)
T cd07940 33 GVDVIEA-----GFPA--ASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL 105 (268)
T ss_pred CCCEEEE-----eCCC--CCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh
Confidence 6777755 3321 122345778888876677777766545788899999999 8877664 33331
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 033625 94 APEPAHVISLMRKSVEDAQ 112 (115)
Q Consensus 94 ~~d~~~~~~~l~~~~~~~~ 112 (115)
..++.+.++.+.+.++.++
T Consensus 106 ~~~~~~~~~~~~~~i~~a~ 124 (268)
T cd07940 106 KKTREEVLERAVEAVEYAK 124 (268)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 1345566666666665543
No 459
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=73.12 E-value=19 Score=34.20 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=54.4
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHHHH-HHHhh--CCCCcEEEEcCC
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKVR-SLRNR--YPSLDIEVDGGL 69 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~ki~-~l~~~--~~~~~i~~dGGI 69 (115)
++|+=|...+-+..++.-+.. ..+|+|.|-.-.-|.+..+.. ...+.... .|... +..+.+.+|||+
T Consensus 998 ~I~VKl~a~~~vg~ia~gvak-a~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl 1076 (1485)
T PRK11750 998 LVSVKLVSEPGVGTIATGVAK-AYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGL 1076 (1485)
T ss_pred cEEEEEccCCCccHHHhChhh-cCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCc
Confidence 355555555556666644422 479999987766665443321 12232332 23332 346999999998
Q ss_pred C-hhhHHHHHHcCCCEEEEccc
Q 033625 70 G-PSTIAEAASAGANCIVAGSS 90 (115)
Q Consensus 70 ~-~~ni~~l~~~Gad~iv~Gsa 90 (115)
. ...+-.....|||.+-.|++
T Consensus 1077 ~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750 1077 KTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred CCHHHHHHHHHcCCcccccchH
Confidence 4 56666778899999998854
No 460
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=73.06 E-value=7.6 Score=29.07 Aligned_cols=43 Identities=30% Similarity=0.522 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 87 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~ 87 (115)
+...+-|+++++.+++..|-+===+|++.++++.++|++++|.
T Consensus 49 p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 49 PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence 4577779999988876544444447999999999999998864
No 461
>PRK02227 hypothetical protein; Provisional
Probab=72.91 E-value=39 Score=25.73 Aligned_cols=96 Identities=19% Similarity=0.323 Sum_probs=59.4
Q ss_pred EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEE-EcCCChhh------HHH
Q 033625 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV-DGGLGPST------IAE 76 (115)
Q Consensus 5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~-dGGI~~~n------i~~ 76 (115)
+-.+|....|....+- .++|.|=+=--..|-=|..| +.. |+++++..+ +.|+++ .|....+- +..
T Consensus 3 lLvSvr~~eEA~~Al~---~GaDiIDvK~P~~GaLGA~~-p~v---ir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~ 75 (238)
T PRK02227 3 LLVSVRNLEEALEALA---GGADIIDVKNPKEGSLGANF-PWV---IREIVAAVPGRKPVSATIGDVPYKPGTISLAALG 75 (238)
T ss_pred eeeccCCHHHHHHHHh---cCCCEEEccCCCCCCCCCCC-HHH---HHHHHHHhCCCCCceeeccCCCCCchHHHHHHHH
Confidence 3456666667777766 78898865333335445444 333 455554433 477776 66665444 455
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625 77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
...+|+|.+=+| +|...+..+....|+...+
T Consensus 76 ~a~~GvDyVKvG--l~~~~~~~~~~~~~~~v~~ 106 (238)
T PRK02227 76 AAATGADYVKVG--LYGGKTAEEAVEVMKAVVR 106 (238)
T ss_pred HHhhCCCEEEEc--CCCCCcHHHHHHHHHHHHH
Confidence 677899999888 6666777777666665543
No 462
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=72.91 E-value=23 Score=27.33 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=58.8
Q ss_pred EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEE--EEcCCChhhHHHHHHcCC
Q 033625 6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIE--VDGGLGPSTIAEAASAGA 82 (115)
Q Consensus 6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~--~dGGI~~~ni~~l~~~Ga 82 (115)
|+|.. ..+.++.++++|...+.-+++.+.|+.....- .+.....++.+.+....+|+. .|-|-+.+.+...++.|.
T Consensus 20 Afn~~-n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf 98 (282)
T TIGR01859 20 AFNFN-NLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGF 98 (282)
T ss_pred EEEEC-CHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCC
Confidence 44443 55667777766666666666677776432211 123344455555554226654 578889999999999999
Q ss_pred CEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625 83 NCIVAGSSVFGAPEPAHVISLMRKSVE 109 (115)
Q Consensus 83 d~iv~Gsaif~~~d~~~~~~~l~~~~~ 109 (115)
+.+-+-..- -+..+.++.-++..+
T Consensus 99 ~sVmid~s~---l~~~eni~~t~~v~~ 122 (282)
T TIGR01859 99 SSVMIDGSH---LPFEENLALTKKVVE 122 (282)
T ss_pred CEEEECCCC---CCHHHHHHHHHHHHH
Confidence 887554321 234445544444443
No 463
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=72.76 E-value=23 Score=26.68 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=42.0
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 93 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~ 93 (115)
+..+.|.+ .++|.|.+ ||. ...+.++++.+.. +.|+.+.-+=..-++.+|.+.|+..++.|...++
T Consensus 159 ~R~~aY~e--AGAD~ifi----~~~-------~~~~~i~~~~~~~-~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 159 ERAKAYAE--AGADMIFI----PGL-------QSEEEIERIVKAV-DGPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHHHH--TT-SEEEE----TTS-------SSHHHHHHHHHHH-SSEEEEETTSSSS-HHHHHHTTESEEEETSHHHH
T ss_pred HHHHHHHH--cCCCEEEe----CCC-------CCHHHHHHHHHhc-CCCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 34455553 58998863 442 1223356665554 5887776653347888999999999999987764
No 464
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=72.75 E-value=11 Score=30.61 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
+.+.|+++++.- +.|+.+=|=.+.+....+.++|+|.|+++
T Consensus 233 tW~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 233 SWKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred CHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence 456688888764 68899999999999999999999999765
No 465
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=72.73 E-value=11 Score=26.47 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=55.7
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 81 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G 81 (115)
+|+.=+|+.+--.+..||-+ .+. -|.+|||++.|+.+. ...+..|.++-+...=+.+---.-.-++.+++..+.|
T Consensus 22 VG~S~~P~r~sy~V~kyL~~-~GY---~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~~~ 97 (140)
T COG1832 22 VGASDKPDRPSYRVAKYLQQ-KGY---RVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALEKG 97 (140)
T ss_pred EecCCCCCccHHHHHHHHHH-CCC---EEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHhhC
Confidence 68888899999888888844 333 345899999887653 4455555555322111223333445577788888888
Q ss_pred CCEEEEcccccC
Q 033625 82 ANCIVAGSSVFG 93 (115)
Q Consensus 82 ad~iv~Gsaif~ 93 (115)
+..|=+=-.+.+
T Consensus 98 ~kv~W~QlGi~n 109 (140)
T COG1832 98 AKVVWLQLGIRN 109 (140)
T ss_pred CCeEEEecCcCC
Confidence 777655555554
No 466
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=72.71 E-value=13 Score=28.30 Aligned_cols=56 Identities=27% Similarity=0.331 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc--------cccCCCCHHHHHHHHHHHH
Q 033625 51 VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS--------SVFGAPEPAHVISLMRKSV 108 (115)
Q Consensus 51 i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs--------aif~~~d~~~~~~~l~~~~ 108 (115)
++.+++. .++||+|. ++.++-+....++|||.+=.|- -.|.++++.+-.++-|+.+
T Consensus 53 V~~~~~~-s~lPICVS-aVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LL 116 (242)
T PF04481_consen 53 VKLAKSL-SNLPICVS-AVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLL 116 (242)
T ss_pred HHHHHHh-CCCCeEee-cCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhC
Confidence 4444433 58999987 5899999999999999999992 2445555555555555543
No 467
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=72.54 E-value=5.4 Score=30.70 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=29.0
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHH-HHHHhh
Q 033625 77 AASAGANCIVAGSSVFGAPEPAHVISLMRKS-VEDAQK 113 (115)
Q Consensus 77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~-~~~~~~ 113 (115)
+...|.|++++|+.++.+.++.+.+++.|+. ++.+++
T Consensus 220 I~~~~~dIiivgrglt~a~~~~~~~e~YRq~~w~a~~~ 257 (261)
T KOG1377|consen 220 IVSLGSDIIIVGRGLTAASKPVQAIERYRQAYWAAYQR 257 (261)
T ss_pred heecCceEEEEcCccccccCcHHHHHHHHHHHHHHHHH
Confidence 3457999999999999988888888888876 344444
No 468
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=72.47 E-value=28 Score=27.19 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=55.4
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--cc--------chhHHHHHHHHHhhCCCCc-EEEEcCCCh
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KF--------MPEMMDKVRSLRNRYPSLD-IEVDGGLGP 71 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~--------~~~~~~ki~~l~~~~~~~~-i~~dGGI~~ 71 (115)
.|..+.-.-..+.+.++++. -..|.+ |++-|=|+... ++ ...-.+.++.+|+..|+.. +++-.|-=.
T Consensus 132 ~G~~~~E~eqp~~i~~Ll~~-~~PDIl-ViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQ 209 (283)
T TIGR02855 132 VGIHCKEKEMPEKVLDLIEE-VRPDIL-VITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQ 209 (283)
T ss_pred EEEEecchhchHHHHHHHHH-hCCCEE-EEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhH
Confidence 46666666666777777743 356765 55667666432 22 1344566788888766544 555566679
Q ss_pred hhHHHHHHcCCCEEEEc
Q 033625 72 STIAEAASAGANCIVAG 88 (115)
Q Consensus 72 ~ni~~l~~~Gad~iv~G 88 (115)
.+...++++||++..+-
T Consensus 210 S~yEall~AGANFASSP 226 (283)
T TIGR02855 210 SHFESLIRAGANFASSP 226 (283)
T ss_pred HHHHHHHHcCccccCCc
Confidence 99999999999987544
No 469
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.31 E-value=10 Score=28.10 Aligned_cols=43 Identities=28% Similarity=0.269 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhhCC---CCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625 45 PEMMDKVRSLRNRYP---SLDIEVDGGLGPSTIAEAASAGANCIVA 87 (115)
Q Consensus 45 ~~~~~ki~~l~~~~~---~~~i~~dGGI~~~ni~~l~~~Gad~iv~ 87 (115)
+..++-|+++++.++ ++.+-+=.=.|.+.++...++||+++|.
T Consensus 49 ~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 49 PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS 94 (213)
T ss_pred ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence 457778888887764 3444444446889999999999999973
No 470
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=72.27 E-value=22 Score=27.81 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=53.9
Q ss_pred eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccc--------hhHHHHHHHHHhhCCCCc-EEEEcCCCh
Q 033625 3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFM--------PEMMDKVRSLRNRYPSLD-IEVDGGLGP 71 (115)
Q Consensus 3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~--------~~~~~ki~~l~~~~~~~~-i~~dGGI~~ 71 (115)
.|+.+.-.-..+.+..+++. ...|.+ |++-|=|+... ++. ..-.+.++.+|+..|+.. +++-.|-=.
T Consensus 133 ~G~~~~E~eqp~~i~~Ll~~-~~PDIl-ViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQ 210 (287)
T PF05582_consen 133 VGIHVPEKEQPEKIYRLLEE-YRPDIL-VITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQ 210 (287)
T ss_pred EEEEechHHhhHHHHHHHHH-cCCCEE-EEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhH
Confidence 35666655555666777743 356765 55677775433 221 334566778887766543 555556679
Q ss_pred hhHHHHHHcCCCEEEEc
Q 033625 72 STIAEAASAGANCIVAG 88 (115)
Q Consensus 72 ~ni~~l~~~Gad~iv~G 88 (115)
.+...|+++|||+..+=
T Consensus 211 S~fEall~AGANFASSP 227 (287)
T PF05582_consen 211 SHFEALLEAGANFASSP 227 (287)
T ss_pred HHHHHHHHcCccccCCc
Confidence 99999999999987544
No 471
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=71.99 E-value=31 Score=24.07 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=45.9
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
...|.+++-...|+.. .++.++++++..++.|+.+ .+.-+.+......++||+-++. +.-++.+-..
T Consensus 43 ~~~dlvild~~l~~~~-------g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~-----kp~~~~eL~~ 110 (223)
T PRK10816 43 HLPDIAIVDLGLPDED-------GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT-----KPFHIEEVMA 110 (223)
T ss_pred CCCCEEEEECCCCCCC-------HHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCeeEe-----CCCCHHHHHH
Confidence 4578887655556543 3455667776656777654 4555566677778999987644 3345555555
Q ss_pred HHHHHHH
Q 033625 103 LMRKSVE 109 (115)
Q Consensus 103 ~l~~~~~ 109 (115)
.++..+.
T Consensus 111 ~i~~~~~ 117 (223)
T PRK10816 111 RMQALMR 117 (223)
T ss_pred HHHHHHh
Confidence 5555543
No 472
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=71.72 E-value=43 Score=25.69 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
..+.++++++.. +.|+.+=+=.+.+....+.++|+|.+++.
T Consensus 160 ~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 160 TWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence 345677777654 47888877789999999999999999885
No 473
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=71.59 E-value=36 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=40.0
Q ss_pred CcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCC-CCHHHHHHHHHHHHHHH
Q 033625 61 LDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGA-PEPAHVISLMRKSVEDA 111 (115)
Q Consensus 61 ~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~-~d~~~~~~~l~~~~~~~ 111 (115)
+-=+..||+++..++.+ ...|.|++.. |.+|+.. +.+++-++.+|+.++.+
T Consensus 351 ~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 404 (450)
T cd08212 351 VMPVASGGIHVGQMHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRVALEAM 404 (450)
T ss_pred ceEecCCCCCHHHHHHHHHhcCCceEEecCcceecCCCChhHHHHHHHHHHHHH
Confidence 33568899999999986 6779997765 5779986 46888888888887753
No 474
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=71.58 E-value=4.3 Score=31.24 Aligned_cols=56 Identities=23% Similarity=0.423 Sum_probs=37.0
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEE-------Ec-CCChhhHHHHHHcCCCEEEEcccccCCCC
Q 033625 37 GFGGQKFMPEMMDKVRSLRNRYPSLDIEV-------DG-GLGPSTIAEAASAGANCIVAGSSVFGAPE 96 (115)
Q Consensus 37 G~~gq~~~~~~~~ki~~l~~~~~~~~i~~-------dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d 96 (115)
|-.|..... +.|.++++.++ ..+.+ .| |++++.+..|.++|+|++.+|==.|...+
T Consensus 11 G~~Gr~~l~---~~L~~lk~~~~-~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~GNH~~Dkge 74 (266)
T TIGR00282 11 GKAGRKIVK---NNLPQLKSKYQ-ADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMGNHTWFQKL 74 (266)
T ss_pred CHHHHHHHH---HHHHHHHHhCC-CCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEccchhccCcH
Confidence 444444333 34666665542 22332 34 69999999999999999999955786554
No 475
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=71.35 E-value=40 Score=25.25 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=39.4
Q ss_pred CCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc----CCCCHHHHHHHHHHHHHH
Q 033625 58 YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF----GAPEPAHVISLMRKSVED 110 (115)
Q Consensus 58 ~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif----~~~d~~~~~~~l~~~~~~ 110 (115)
.++..|.+.-=-+.+++-++..+|+|.+-+.-.+| +.+-..+.++.+.+-+++
T Consensus 159 ~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~~ 215 (222)
T PRK12656 159 NSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWEA 215 (222)
T ss_pred CCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 45677888877888899998899999999996665 345556666666655543
No 476
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=71.30 E-value=30 Score=23.71 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=44.4
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 102 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~ 102 (115)
...|.+++-...|+.. .++.++++++..++.|+.+ .+.-+.+......++|++.++.- .-+..+-..
T Consensus 41 ~~~dlvl~d~~~~~~~-------g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~k-----p~~~~~l~~ 108 (218)
T TIGR01387 41 DDYDLIILDVMLPGMD-------GWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADDYLVK-----PFSFSELLA 108 (218)
T ss_pred CCCCEEEEeCCCCCCC-------HHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcCCCeEEEC-----CCCHHHHHH
Confidence 4678887655455533 4456777776656777554 45556667777889999977554 234444444
Q ss_pred HHHHHH
Q 033625 103 LMRKSV 108 (115)
Q Consensus 103 ~l~~~~ 108 (115)
.++..+
T Consensus 109 ~i~~~~ 114 (218)
T TIGR01387 109 RVRTLL 114 (218)
T ss_pred HHHHHh
Confidence 444443
No 477
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=71.05 E-value=46 Score=27.64 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=55.8
Q ss_pred HhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEc-------C------CChhhHHHHHH
Q 033625 14 EEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDG-------G------LGPSTIAEAAS 79 (115)
Q Consensus 14 ~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~i~~dG-------G------I~~~ni~~l~~ 79 (115)
+.+++++ ...|.+++..-+-+.. |..-.+....++-..++. .++|..+.. + -....+.....
T Consensus 227 ~nl~eI~---~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aara-ag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~ 302 (473)
T TIGR01064 227 DNIDEIA---EASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNR-AGKPVITATQMLDSMIKNPRPTRAEVSDVANAIL 302 (473)
T ss_pred HhHHHHH---hhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHH-cCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHH
Confidence 5667776 5567666543322211 111112222232222222 256655544 1 13467777888
Q ss_pred cCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625 80 AGANCIVAGSSVFGAPEPAHVISLMRKSVED 110 (115)
Q Consensus 80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~ 110 (115)
.|+|.+.+++...-...|.++++.++++..+
T Consensus 303 ~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 303 DGTDAVMLSGETAKGKYPVEAVKMMAKIAKE 333 (473)
T ss_pred cCCCEEEEcchhhcCCCHHHHHHHHHHHHHH
Confidence 8999999998877678999999999988764
No 478
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=70.95 E-value=12 Score=28.02 Aligned_cols=72 Identities=26% Similarity=0.312 Sum_probs=40.3
Q ss_pred CCCCHHhHHHhHhCCCCCCEEEEE----------eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625 9 PGTSVEEVYPLVEGANPVEMVLVM----------TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 78 (115)
Q Consensus 9 p~t~~~~~~~~~~~~~~vD~vlvm----------~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~ 78 (115)
..++++.+...++..-+.+.|-+. ++-+|.++ .+ ++++.+ .++.+.+.|=++.+......
T Consensus 140 ~~~s~~el~~~vk~~l~~~~vr~~g~~~~~v~rVav~~GsG~-~~-------i~~a~~--~g~D~~ITGd~~~h~~~~a~ 209 (241)
T PF01784_consen 140 EPMSLEELAERVKEKLGLPGVRVVGDPDKKVKRVAVCGGSGG-SF-------IEEAAE--AGADVYITGDIKYHDAQDAK 209 (241)
T ss_dssp EEEEHHHHHHHHHHHTTSS-EEEESCTTSEEEEEEEECSSSG-GG-------HHHHHH--TTSSEEEESS--HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcEEecCCCCCcccEEEEEcccCc-cH-------HHHHHh--CCCeEEEEccCcHHHHHHHH
Confidence 335666655555432344555443 34455444 22 233332 25788888989988888888
Q ss_pred HcCCCEEEEccc
Q 033625 79 SAGANCIVAGSS 90 (115)
Q Consensus 79 ~~Gad~iv~Gsa 90 (115)
+.|..++.+|..
T Consensus 210 ~~g~~lI~~gH~ 221 (241)
T PF01784_consen 210 ENGINLIDAGHY 221 (241)
T ss_dssp HCTSEEEE--HH
T ss_pred HCCCEEEEcCCH
Confidence 889888888854
No 479
>PLN02540 methylenetetrahydrofolate reductase
Probab=70.86 E-value=34 Score=29.26 Aligned_cols=94 Identities=23% Similarity=0.416 Sum_probs=55.0
Q ss_pred CHHhHHHhHhC--CCCCCEEEEEeeeCCCCCccc------chhHHHHHHHHHhhCCC-CcEEEEc-------------CC
Q 033625 12 SVEEVYPLVEG--ANPVEMVLVMTVEPGFGGQKF------MPEMMDKVRSLRNRYPS-LDIEVDG-------------GL 69 (115)
Q Consensus 12 ~~~~~~~~~~~--~~~vD~vlvm~v~pG~~gq~~------~~~~~~ki~~l~~~~~~-~~i~~dG-------------GI 69 (115)
..+.++..|.+ +.++.-||++.-+|--.+..+ ...+.+.|+.+++++.+ +-|.+.| +.
T Consensus 71 n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~ 150 (565)
T PLN02540 71 PVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLA 150 (565)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCccccccccc
Confidence 34444444432 257999999988876444322 13578888888886432 4444442 12
Q ss_pred Ch-------hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625 70 GP-------STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106 (115)
Q Consensus 70 ~~-------~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~ 106 (115)
++ +.+++=.++||| +++.-.+|..+...+.++.+++
T Consensus 151 ~~~~~~~dl~~Lk~KvdAGAd-FiITQlfFD~d~f~~f~~~~r~ 193 (565)
T PLN02540 151 TPEAYQKDLAYLKEKVDAGAD-LIITQLFYDTDIFLKFVNDCRQ 193 (565)
T ss_pred CCCChHHHHHHHHHHHHcCCC-EEeeccccCHHHHHHHHHHHHh
Confidence 22 233333579999 6677788876655555555554
No 480
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=70.55 E-value=43 Score=26.95 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCHHhHHHhHhCCCCC----CEE--EEEeeeCCCC-CcccchhHHHHHHHHHhhC--------CCCcEEEEc--CCChh
Q 033625 10 GTSVEEVYPLVEGANPV----EMV--LVMTVEPGFG-GQKFMPEMMDKVRSLRNRY--------PSLDIEVDG--GLGPS 72 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~v----D~v--lvm~v~pG~~-gq~~~~~~~~ki~~l~~~~--------~~~~i~~dG--GI~~~ 72 (115)
.|..+....+++. -++ |.+ =+.++|--|. +.+ .-.+++|+++++.. +++|++.=| |+..+
T Consensus 187 ~TdPeeA~~Fv~~-Tgv~~~~D~LAvaiGt~HG~Yk~~~p--~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde 263 (350)
T PRK09197 187 YTQPEDVLYAYEA-LGKISGRFTIAASFGNVHGVYKPGNV--KLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLE 263 (350)
T ss_pred cCCHHHHHHHHHH-hCCCCcceEEeeecccccCCcCCCCC--ccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHH
Confidence 5777888888743 344 654 3344555554 322 12345555555443 268999888 58899
Q ss_pred hHHHHHHcCCCEEEEccccc
Q 033625 73 TIAEAASAGANCIVAGSSVF 92 (115)
Q Consensus 73 ni~~l~~~Gad~iv~Gsaif 92 (115)
.++++.+.|+.-+=+++.+.
T Consensus 264 ~i~~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 264 EIREAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred HHHHHHHCCCeeEEeCcHHH
Confidence 99999999999998887764
No 481
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=70.47 E-value=37 Score=27.01 Aligned_cols=71 Identities=23% Similarity=0.415 Sum_probs=47.1
Q ss_pred ecCCCCHHhHHHhHhCC-CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625 7 LKPGTSVEEVYPLVEGA-NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG 70 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~~-~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~ 70 (115)
++|...-|.+.+...|. .++|+++ |.|+.. -++-|+++++.. ++|+.+ -|=++
T Consensus 219 mdp~n~~eAlre~~~Di~EGAD~lM---VKPal~-------YLDIi~~~k~~~-~lPvaaYqVSGEYaMikaAa~~G~~d 287 (320)
T cd04823 219 MDPANSREALREVALDIAEGADMVM---VKPGMP-------YLDIIRRVKDEF-GVPTFAYQVSGEYAMLKAAAQNGWLD 287 (320)
T ss_pred CCCCCHHHHHHHHHhhHHhCCCEEE---EcCCch-------HHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 45666667776666552 5899997 788743 455677777765 577654 24444
Q ss_pred -----hhhHHHHHHcCCCEEEEc
Q 033625 71 -----PSTIAEAASAGANCIVAG 88 (115)
Q Consensus 71 -----~~ni~~l~~~Gad~iv~G 88 (115)
.|.+..++.+|||+|+.=
T Consensus 288 ~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 288 EDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred HHHHHHHHHHHHHhcCCCEEeec
Confidence 455666789999998754
No 482
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=70.35 E-value=12 Score=30.29 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=48.0
Q ss_pred hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc-ccccC
Q 033625 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG-SSVFG 93 (115)
Q Consensus 15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G-saif~ 93 (115)
.+++.+ ...|+|+ +-+.-++.|.+.-.....+.++.+.+ ++|+.+..|-......++.+.|.+.+..- .....
T Consensus 277 ~l~~~l---~~aDlVI--TGEG~~D~Qtl~GK~p~~Va~~A~~~-~vPviav~G~~~~~~~~l~~~Gi~~v~~i~~~~~~ 350 (377)
T PF02595_consen 277 GLEERL---EDADLVI--TGEGRLDAQTLAGKVPGGVARLAKKH-GVPVIAVAGSVDLDAEELYDAGITAVFSIIDGPMS 350 (377)
T ss_dssp THHHHC---CC-SEEE--E--CECSTTTTTTCHHHHHHCCHCCT-T--EEEEECEC-TT---SSBTTECEEEEEE-SSTT
T ss_pred CHHHHh---cCCCEEE--ECccccccccCCCcHHHHHHHHHHHc-CCcEEEEeCCCCCChHHHhhhCCeEEEECCCCCCC
Confidence 466777 7899775 55666888888766766777665553 68877776666666788888898754433 32222
Q ss_pred C-CCHHHHHHHHHHHH
Q 033625 94 A-PEPAHVISLMRKSV 108 (115)
Q Consensus 94 ~-~d~~~~~~~l~~~~ 108 (115)
- +..++..+.|++..
T Consensus 351 l~~a~~~~~~~L~~~~ 366 (377)
T PF02595_consen 351 LEEAMANAAENLERAA 366 (377)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 2 23344444444433
No 483
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.17 E-value=14 Score=29.98 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=36.6
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHH-HHH--cCCCEEEEcc
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AAS--AGANCIVAGS 89 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~-l~~--~Gad~iv~Gs 89 (115)
..+|.++|-+...-..........+.+++++++.+|+.+ .+.||.-....++ +.+ -++|.++.+.
T Consensus 39 ~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~-vvvgGc~as~~~ee~~~~~~~vD~vv~~e 106 (444)
T PRK14325 39 EEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLI-IGVGGCVAQQEGEEILKRAPYVDIVFGPQ 106 (444)
T ss_pred CCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCE-EEEECchhccCHHHHHhhCCCCcEEECCC
Confidence 457999887665543322222223334555566666664 5556665555544 443 3789887554
No 484
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=70.05 E-value=3.4 Score=33.35 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCC-CCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC------------ChhhHH
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL------------GPSTIA 75 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG-~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI------------~~~ni~ 75 (115)
.|-+++++..+++ +--++|-|+|. |.-+.|. .-.++.+.++.+.+ ++|+.+|=|- .+.++.
T Consensus 123 ~t~~~Dye~AI~e----~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~ 197 (367)
T PF03841_consen 123 RTHLSDYEKAITE----NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEH-GLPVIVDLGSGLLVDLSPYGLPDEPTVQ 197 (367)
T ss_dssp ------------------------------------------HHHHHHHHH-T--EEEE-TTHHHHHHHTT---------
T ss_pred ccccccccccccc----cccccccccccccccccccccccHHHHHHHHhhc-CCcEEEECCCCCCcCcccccCccccHHH
Confidence 3455566666532 33456677742 3222221 22444556655443 7999999886 367888
Q ss_pred HHHHcCCCEEEEccc-ccCCC
Q 033625 76 EAASAGANCIVAGSS-VFGAP 95 (115)
Q Consensus 76 ~l~~~Gad~iv~Gsa-if~~~ 95 (115)
++.+.|+|.++-... +++.+
T Consensus 198 ~~~~~GaDlV~fSGdKlLGGP 218 (367)
T PF03841_consen 198 EYLAAGADLVTFSGDKLLGGP 218 (367)
T ss_dssp -CCCCT-SEEEEETTSSSSS-
T ss_pred HHhhcCCCEEEEECCCcCCCC
Confidence 889999999876533 66544
No 485
>PLN02417 dihydrodipicolinate synthase
Probab=69.93 E-value=46 Score=25.31 Aligned_cols=82 Identities=13% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHH---HHHHHhhCC-CCcEEE-EcCCCh-hhHH---HHHHcCCCEEEEcccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNRYP-SLDIEV-DGGLGP-STIA---EAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~k---i~~l~~~~~-~~~i~~-dGGI~~-~ni~---~l~~~Gad~iv~Gsaif~~ 94 (115)
.++|.|.+ .|.+|.-+.-..-|+ ++.+.+... .+|+.+ .|+.+. +.+. ...++|||.+++..-.|..
T Consensus 34 ~Gv~Gi~~----~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~ 109 (280)
T PLN02417 34 NGAEGLIV----GGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK 109 (280)
T ss_pred cCCCEEEE----CccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCC
Confidence 47888854 476666543233333 333333322 355432 333333 2222 3468999999999887766
Q ss_pred CCHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVE 109 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~ 109 (115)
.+.++..+.+++..+
T Consensus 110 ~~~~~i~~~f~~va~ 124 (280)
T PLN02417 110 TSQEGLIKHFETVLD 124 (280)
T ss_pred CCHHHHHHHHHHHHh
Confidence 665555555555443
No 486
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=69.79 E-value=31 Score=28.29 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCCCEEEEEeeeCCCCCc-ccchhHHHH-HHHHHhhC---CCCcEEEEcCCChhhHHHH-HHcCCCEEEEc-ccccCC-C
Q 033625 24 NPVEMVLVMTVEPGFGGQ-KFMPEMMDK-VRSLRNRY---PSLDIEVDGGLGPSTIAEA-ASAGANCIVAG-SSVFGA-P 95 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq-~~~~~~~~k-i~~l~~~~---~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~G-saif~~-~ 95 (115)
.++|.+.+ |++.|. .+.++...+ .+.+++-. +.+-=+..||+++..++++ ...|-|++..- .+|+.. +
T Consensus 292 aGaD~~~~----~~~~Gk~~~~~~~~~~~~~~~~~p~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~ 367 (407)
T TIGR03332 292 AGADFSLF----PSPYGSVALEREDALAISKELTEDDAPFKKTFAVPSAGIHPGMVPLIMRDFGIDHIINAGGGIHGHPN 367 (407)
T ss_pred cCcCcccc----CCcccCCCCCHHHHHHHHHHHhccccCCCccEEecCCCcChhHHHHHHHHhCCceEEecCcccccCCC
Confidence 57888854 443332 222333222 33333311 2334568999999999985 78899977654 669986 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKSVEDA 111 (115)
Q Consensus 96 d~~~~~~~l~~~~~~~ 111 (115)
.+++-++.+|+.++.+
T Consensus 368 G~~aGa~A~rqA~ea~ 383 (407)
T TIGR03332 368 GAQGGGRAFRAAIDAV 383 (407)
T ss_pred CchhhHHHHHHHHHHH
Confidence 6788888899887753
No 487
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=69.54 E-value=35 Score=25.38 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=45.9
Q ss_pred CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---EcCCChhhHHH----HHHcCCCEEEEcccccCCC
Q 033625 23 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAE----AASAGANCIVAGSSVFGAP 95 (115)
Q Consensus 23 ~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---dGGI~~~ni~~----l~~~Gad~iv~Gsaif~~~ 95 (115)
|..+|+| ++-+.-...-.....+.|+++++...+.++-+ .+=++.+.+.. +.++|+|++-.++......
T Consensus 88 A~EiD~V----in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~g 163 (221)
T PRK00507 88 ADEIDMV----INIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGG 163 (221)
T ss_pred CceEeee----ccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence 4677755 34443222223456666777776543445555 66688777654 5789999887777753222
Q ss_pred CHHHHHHHHHHH
Q 033625 96 EPAHVISLMRKS 107 (115)
Q Consensus 96 d~~~~~~~l~~~ 107 (115)
--.+.++.|++.
T Consensus 164 at~~~v~~m~~~ 175 (221)
T PRK00507 164 ATVEDVKLMRET 175 (221)
T ss_pred CCHHHHHHHHHH
Confidence 223444444443
No 488
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.53 E-value=46 Score=25.09 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCCCEEEEEeeeCCCCCcccchhHHHH---HHHHHhhCC-CCcEE-EEcCCCh-hhH---HHHHHcCCCEEEEcccccCC
Q 033625 24 NPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNRYP-SLDIE-VDGGLGP-STI---AEAASAGANCIVAGSSVFGA 94 (115)
Q Consensus 24 ~~vD~vlvm~v~pG~~gq~~~~~~~~k---i~~l~~~~~-~~~i~-~dGGI~~-~ni---~~l~~~Gad~iv~Gsaif~~ 94 (115)
.++|.+.++ |.+|+-+.-..-|+ ++.+++... .+|+. -.|+.+. +.+ +...++|+|.+++..-.|-.
T Consensus 33 ~Gv~gl~v~----GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~ 108 (284)
T cd00950 33 NGTDGLVVC----GTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNK 108 (284)
T ss_pred cCCCEEEEC----CCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCC
Confidence 478888654 66666543222223 333444433 35543 3343333 333 34578999999999776655
Q ss_pred CCHHHHHHHHHHHHH
Q 033625 95 PEPAHVISLMRKSVE 109 (115)
Q Consensus 95 ~d~~~~~~~l~~~~~ 109 (115)
.+..+.++-++++.+
T Consensus 109 ~~~~~l~~~~~~ia~ 123 (284)
T cd00950 109 PSQEGLYAHFKAIAE 123 (284)
T ss_pred CCHHHHHHHHHHHHh
Confidence 555666666665554
No 489
>PRK13753 dihydropteroate synthase; Provisional
Probab=69.50 E-value=26 Score=27.19 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=45.7
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCcccchh---HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMPE---MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~~---~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i 85 (115)
.-++..+.+++ +++|+|=|.. ..||..--.-.++ ...-|+.+++. ..+|.+|=- +++.+...+++|||++
T Consensus 26 ~a~~~a~~m~~--~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISIDT~-~~~va~~al~aGadiI 100 (279)
T PRK13753 26 GAVTAAIEMLR--VGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSIDSF-QPETQRYALKRGVGYL 100 (279)
T ss_pred HHHHHHHHHHH--CCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEEECC-CHHHHHHHHHcCCCEE
Confidence 33455556662 5899987765 3465432111112 22334555543 467888865 7888888888888887
Q ss_pred EEcccc
Q 033625 86 VAGSSV 91 (115)
Q Consensus 86 v~Gsai 91 (115)
--.|+.
T Consensus 101 NDVsg~ 106 (279)
T PRK13753 101 NDIQGF 106 (279)
T ss_pred EeCCCC
Confidence 766664
No 490
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=69.42 E-value=35 Score=27.09 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCEEEEEee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625 25 PVEMVLVMTV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 25 ~vD~vlvm~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G 88 (115)
++.-+.+.+- .|-.. ......+.++.+++..+.+.+.+ +-++.+.+..|+++|+|.+-++
T Consensus 119 Gv~~i~lvgGe~p~~~---~~e~l~eii~~Ik~~~p~i~Iei-~~lt~e~~~~Lk~aGv~r~~i~ 179 (366)
T TIGR02351 119 GFKEILLVTGESEKAA---GVEYIAEAIKLAREYFSSLAIEV-QPLNEEEYKKLVEAGLDGVTVY 179 (366)
T ss_pred CCCEEEEeeCCCCCCC---CHHHHHHHHHHHHHhCCcccccc-ccCCHHHHHHHHHcCCCEEEEE
Confidence 5666665432 23211 12345556777777666666665 4699999999999999999887
No 491
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=69.35 E-value=43 Score=26.66 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=46.9
Q ss_pred ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625 7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG 70 (115)
Q Consensus 7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~ 70 (115)
++|...-|.+.+...| ..++|+|+ |.||.. -++-|+++++.. ++|+.+ -|=++
T Consensus 223 mdp~n~~eAlre~~~D~~EGAD~lM---VKPal~-------YLDIi~~~k~~~-~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 223 LDYANGRQALLEALLDEAEGADILM---VKPGTP-------YLDVLSRLRQET-HLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred CCCCCHHHHHHHHHhhHhhCCCEEE---EcCCch-------HHHHHHHHHhcc-CCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 4566667777776655 24899997 788843 455677777653 677653 14444
Q ss_pred h-----hhHHHHHHcCCCEEEEc
Q 033625 71 P-----STIAEAASAGANCIVAG 88 (115)
Q Consensus 71 ~-----~ni~~l~~~Gad~iv~G 88 (115)
+ |.+--++.+|||+|+.=
T Consensus 292 ~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 292 ERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred HHHHHHHHHHHHHHcCCCEEeeh
Confidence 4 55566789999998753
No 492
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=69.18 E-value=31 Score=26.30 Aligned_cols=102 Identities=13% Similarity=0.267 Sum_probs=63.3
Q ss_pred ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC-CCCcc--cchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHH
Q 033625 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQK--FMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAE 76 (115)
Q Consensus 2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG-~~gq~--~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~ 76 (115)
++.|-+.|+ .+.++...+ -++|+|=+ +.| |+... -....++++....+. ..++.+.+=.|+|.+|+..
T Consensus 128 rVSLFidP~--~~qi~~A~~--~GAd~VEL---hTG~yA~a~~~~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~ 200 (239)
T PRK05265 128 RVSLFIDPD--PEQIEAAAE--VGADRIEL---HTGPYADAKTEAEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKP 200 (239)
T ss_pred EEEEEeCCC--HHHHHHHHH--hCcCEEEE---echhhhcCCCcchHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHH
Confidence 455555543 333333321 37888864 555 32221 112335555555433 2478899999999999999
Q ss_pred HHH-cCCCEEEEcccccCCC---CHHHHHHHHHHHHHH
Q 033625 77 AAS-AGANCIVAGSSVFGAP---EPAHVISLMRKSVED 110 (115)
Q Consensus 77 l~~-~Gad~iv~Gsaif~~~---d~~~~~~~l~~~~~~ 110 (115)
+.+ -+..-+..|.+|+... -..++++++++.+.+
T Consensus 201 i~~ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~~ 238 (239)
T PRK05265 201 IAAIPGIEELNIGHAIIARALFVGLEEAVREMKRLMDE 238 (239)
T ss_pred HhhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 866 4678889998877532 457888888877654
No 493
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=69.18 E-value=31 Score=26.18 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHhHHHhHhCCCCCCEEEEE--eeeCCCCCcccchhHHHH----HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625 13 VEEVYPLVEGANPVEMVLVM--TVEPGFGGQKFMPEMMDK----VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86 (115)
Q Consensus 13 ~~~~~~~~~~~~~vD~vlvm--~v~pG~~gq~~~~~~~~k----i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv 86 (115)
++....+++ .++|+|=|. +.+||.....-. +-+++ ++.+++.. ++|+++|=- +++.+...++.|++++-
T Consensus 27 ~~~a~~~~~--~GAdiIDIG~~st~p~~~~i~~~-~E~~rl~~~v~~i~~~~-~~plSIDT~-~~~v~e~al~~G~~iIN 101 (257)
T cd00739 27 VAHAEKMIA--EGADIIDIGGESTRPGADPVSVE-EELERVIPVLEALRGEL-DVLISVDTF-RAEVARAALEAGADIIN 101 (257)
T ss_pred HHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHH-HHHHHHHHHHHHHHhcC-CCcEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 344445552 589999884 456776543322 22233 44454432 566766644 56666665566666554
Q ss_pred Ecc
Q 033625 87 AGS 89 (115)
Q Consensus 87 ~Gs 89 (115)
..|
T Consensus 102 dis 104 (257)
T cd00739 102 DVS 104 (257)
T ss_pred eCC
Confidence 443
No 494
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.18 E-value=15 Score=27.59 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhCCCCcEEEE---cCCChhhHHHHHHcCCCEEEEc
Q 033625 46 EMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAGANCIVAG 88 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~d---GGI~~~ni~~l~~~Gad~iv~G 88 (115)
...+.++++++..++.++.+- |-.+.+.+....++|+|.+-+.
T Consensus 60 ~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~ 105 (263)
T cd07943 60 TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVA 105 (263)
T ss_pred ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcCCCEEEEE
Confidence 355677777766566666554 3446888999999999987664
No 495
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=69.12 E-value=40 Score=26.17 Aligned_cols=84 Identities=20% Similarity=0.121 Sum_probs=53.1
Q ss_pred CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC--CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHH
Q 033625 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA 77 (115)
Q Consensus 1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG--~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l 77 (115)
||+.+.=++...+..++.+++ .+.+.+.|.+-.+- ..++++.+.. ++++.+.. ++|+.-..-++ .+.++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~--~~~~i~~Vvt~pd~~~~r~~~~~~~~---v~~~A~~~-~Ipv~~~~~~~~~~~~~~l 74 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRE--DNFEVVGVVTQPDKPAGRGKKLTPPP---VKVLAEEK-GIPVFQPEKQRQLEELPLV 74 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCCCccCCCCCCCCCh---HHHHHHHc-CCCEEecCCCCcHHHHHHH
Confidence 344444445555678888872 34788888876542 2344444444 44444443 68877666666 3567788
Q ss_pred HHcCCCEEEEccc
Q 033625 78 ASAGANCIVAGSS 90 (115)
Q Consensus 78 ~~~Gad~iv~Gsa 90 (115)
.+..+|.+++.+.
T Consensus 75 ~~~~~Dliv~~~~ 87 (313)
T TIGR00460 75 RELKPDVIVVVSF 87 (313)
T ss_pred HhhCCCEEEEccc
Confidence 8899999998753
No 496
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=69.04 E-value=49 Score=25.25 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEcc
Q 033625 11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGS 89 (115)
Q Consensus 11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~Gs 89 (115)
.|.+....|.+ .+++.|=|++=..-|+| .++-++++++.. ++|+. =|+=+++..+.+...+|||.+.+..
T Consensus 62 d~~~~A~~y~~--~GA~aISVlTe~~~F~G------s~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADavLLI~ 132 (247)
T PRK13957 62 HPVQIAKTYET--LGASAISVLTDQSYFGG------SLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAILLIV 132 (247)
T ss_pred CHHHHHHHHHH--CCCcEEEEEcCCCcCCC------CHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEEEeEH
Confidence 34455555552 46877755433333444 345567776653 56655 5666789999999999999998888
Q ss_pred cccCCC
Q 033625 90 SVFGAP 95 (115)
Q Consensus 90 aif~~~ 95 (115)
++...+
T Consensus 133 ~~L~~~ 138 (247)
T PRK13957 133 RILTPS 138 (247)
T ss_pred hhCCHH
Confidence 777533
No 497
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=68.92 E-value=42 Score=24.46 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=40.5
Q ss_pred CCCCEEEEEe--eeCCCCCccc---chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccc
Q 033625 24 NPVEMVLVMT--VEPGFGGQKF---MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 91 (115)
Q Consensus 24 ~~vD~vlvm~--v~pG~~gq~~---~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsai 91 (115)
.++|+|=|.+ ..||.....- .......|+.+++.+.++|+++|=- +++.+...+++|++++.-.++.
T Consensus 31 ~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~-~~~v~~~aL~~g~~~ind~~~~ 102 (210)
T PF00809_consen 31 AGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF-NPEVAEAALKAGADIINDISGF 102 (210)
T ss_dssp TT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES-SHHHHHHHHHHTSSEEEETTTT
T ss_pred hcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC-CHHHHHHHHHcCcceEEecccc
Confidence 6899987653 4566533222 1223333444454345788999865 7788887777788877666554
No 498
>PRK04311 selenocysteine synthase; Provisional
Probab=68.67 E-value=41 Score=27.80 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=43.9
Q ss_pred CCCHHhHHHhHhCCCCCCEEEEEeeeCCC---CCcccchhHHHHHHHHHhhCCCCcEEEEcCC------------ChhhH
Q 033625 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGF---GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL------------GPSTI 74 (115)
Q Consensus 10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~---~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI------------~~~ni 74 (115)
.|.++.+++.++ +... +++.+++.. .|... ...++.|.++.+.+ ++++.+|.|. ...++
T Consensus 203 ~t~~~dle~aI~--~~Tk--lV~~vh~sN~~i~G~~~-~~dl~eI~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~~ 276 (464)
T PRK04311 203 RTHLRDYEQAIN--ENTA--LLLKVHTSNYRIEGFTK-EVSLAELAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPTV 276 (464)
T ss_pred CCCHHHHHHhcC--ccCe--EEEEEcCCCccccccCC-cCCHHHHHHHHHHc-CCeEEEECCCcccccchhccCCCCCch
Confidence 366777787773 2333 444566642 23221 22456666666553 7999999963 12355
Q ss_pred HHHHHcCCCEEEEc
Q 033625 75 AEAASAGANCIVAG 88 (115)
Q Consensus 75 ~~l~~~Gad~iv~G 88 (115)
....+.|+|+++..
T Consensus 277 ~~~l~~GaDiv~fS 290 (464)
T PRK04311 277 QELLAAGVDLVTFS 290 (464)
T ss_pred hhHHhcCCcEEEec
Confidence 66678999988654
No 499
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=68.32 E-value=21 Score=28.75 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCC--ChhhHHHHHHcC-CCEEEEccc
Q 033625 46 EMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAG-ANCIVAGSS 90 (115)
Q Consensus 46 ~~~~ki~~l~~~~~~~~i~~dGGI--~~~ni~~l~~~G-ad~iv~Gsa 90 (115)
+..+.++++|+..+++||.+=++. +.+.+....+.| +|.|++...
T Consensus 200 ~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~ 247 (392)
T cd02808 200 DLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGA 247 (392)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 457788999988765888776665 466666666655 999988743
No 500
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=68.19 E-value=19 Score=29.68 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCChhhHHHHHHcC--CCEEEEcccccC
Q 033625 59 PSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFG 93 (115)
Q Consensus 59 ~~~~i~~dGGI~~~ni~~l~~~G--ad~iv~Gsaif~ 93 (115)
+++.|.+.||++++.+..+.+.| +|.+=+|+.+..
T Consensus 278 ~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~ 314 (443)
T PRK12484 278 EQVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGV 314 (443)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCcCeEEeeCccccc
Confidence 57889999999999999999888 788888988854
Done!