RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033625
(115 letters)
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 104 bits (259), Expect = 1e-29
Identities = 91/112 (81%), Positives = 101/112 (90%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
MRPGV+L+PGT VEEV+PLVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 109 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 168
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
LDIEVDGGLGPSTI AASAGANCIVAGSS+FGA EP VIS +RKSVE +Q
Sbjct: 169 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ 220
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 102 bits (254), Expect = 7e-29
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR----SLRN 56
+ GV L PGT + + +++ V++VL+M+V PGFGGQ F+ + K+
Sbjct: 119 AKAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAE 175
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
R + IEVDGG+GP + AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 176 RGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK 227
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 97.1 bits (241), Expect = 5e-27
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ G L P T ++ + ++ +++L+M+V PGFGGQ F+PE++ K+R+LR
Sbjct: 111 KKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 167
Query: 61 ----LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
IEVDGGL P+ + AGAN IVAGS+VF AP A I+ +R S
Sbjct: 168 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK 219
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 90.7 bits (224), Expect = 2e-24
Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ G+++KP T V+++ P+++ N + VLVMTVEPGFGGQ FM +MM KV LR +Y +
Sbjct: 112 LWCGISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKN 170
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
L+I+VDGGL T +AS GAN IVAG+S+F A +P +VI MR SV+
Sbjct: 171 LNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQ 219
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 87.0 bits (215), Expect = 4e-23
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS----LRN 56
M+ GV + PGT + PL++ V+ VL+MTV PGFGGQ F+PE ++KV +
Sbjct: 108 MKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE 164
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
+ S DIEVDGG+ TI AGAN VAGS +F A + + +R ++
Sbjct: 165 KGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 84.5 bits (208), Expect = 4e-22
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 3/109 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ L + E+ + A ++V + + G + + ++ L
Sbjct: 105 GDVQIELTGYWTWEQAQQWRD-AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLS--DMG 161
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
+ V GGL + + +AG S+ A P ++S+
Sbjct: 162 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 210
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 44.2 bits (103), Expect = 4e-07
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAG 81
+ + + E G +++ +R+R + G+G +A AG
Sbjct: 119 PLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG 178
Query: 82 ANCIVAGSSVFGAPEPAHVISLMRKS 107
A+ I+ G +++ AP P +
Sbjct: 179 ADYIIVGRAIYNAPNPREAAKAIYDE 204
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 37.2 bits (85), Expect = 1e-04
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 28 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-IAEAASAGANCIV 86
+ M V+ G +++ LR + G+G A+ I+
Sbjct: 131 EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAII 190
Query: 87 AGSSVFGAPEPAHVISLMRKSV 108
G S++ A PA + + +S+
Sbjct: 191 VGRSIYLADNPAAAAAGIIESI 212
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 36.8 bits (84), Expect = 2e-04
Identities = 15/83 (18%), Positives = 28/83 (33%)
Query: 27 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86
E L V + + ++ + + + +T A A G++ IV
Sbjct: 153 ESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIV 212
Query: 87 AGSSVFGAPEPAHVISLMRKSVE 109
G S+ A +P +R E
Sbjct: 213 VGRSITKAEDPVKAYKAVRLEWE 235
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 35.4 bits (81), Expect = 4e-04
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 44 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95
E+ D R +++ P++ +EV GG+ ++ + I +
Sbjct: 109 PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV 160
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 33.7 bits (76), Expect = 0.002
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 72 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
T +A SAG + +V G V + +PA + + S++
Sbjct: 194 MTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 231
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 30.7 bits (69), Expect = 0.021
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 48 MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
V++++ +P++ GG+ + E AG + GS++ P V +
Sbjct: 137 PQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALV-KGTPDEVREKAKAF 195
Query: 108 VE 109
VE
Sbjct: 196 VE 197
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 29.2 bits (65), Expect = 0.073
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 18 PLVEGANPVEMVLVMTVEPGFGGQKFMPEM----MDKVRSLRNRYPSLDIEVDGGLGPST 73
P+ G N M + + +E G KF P + +++L Y L I GG+G
Sbjct: 109 PITPGVNNP-MAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHN 167
Query: 74 IAEAASAGANCIVAGSSVF 92
I + + GS
Sbjct: 168 IRDYLAIPNIVACGGSWFV 186
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 29.3 bits (65), Expect = 0.086
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106
E AN V G ++ + P I +++
Sbjct: 165 VTLEEMKGIANFAVLGREIYLSENPREKIKRIKE 198
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 28.6 bits (63), Expect = 0.14
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPA 98
T+ + S G++ I+ G +F A
Sbjct: 219 TVDDVVSTGSDIIIVGRGLFAKGRDA 244
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 28.0 bits (62), Expect = 0.23
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 26 VEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN 83
V+ + G P + + + + VD G+G S A A G
Sbjct: 149 CIAVMPLA-GLIGSGLGICNPYNLRIIL----EEAKVPVLVDAGVGTASDAAIAMELGCE 203
Query: 84 CIVAGSSVFGAPEPAHVISLMRKSVE 109
++ +++ A +P + M+ ++
Sbjct: 204 AVLMNTAIAHAKDPVMMAEAMKHAIV 229
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 26.7 bits (58), Expect = 0.62
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 37 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP 95
G+ D + + +G + P + G IV G ++
Sbjct: 160 GYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPK 219
Query: 96 EPA 98
E A
Sbjct: 220 EIA 222
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 26.0 bits (57), Expect = 0.97
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 37 GFGGQKFMPE----MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
G KF P + ++++ + + GG+ P+ + + + + GS +
Sbjct: 128 GLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLV 187
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 346
Score = 25.7 bits (56), Expect = 1.4
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 51 VRSLRNRYPSLDIE-----------VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH 99
+ + N + +D++ D GL E+ C +A + G E
Sbjct: 164 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF 223
Query: 100 VISLMRKSVE 109
+ +
Sbjct: 224 SEKELNRIKR 233
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 25.4 bits (55), Expect = 1.9
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 63 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 105
+GG+G EA C +A + ++ SL++
Sbjct: 213 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 255
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 24.6 bits (53), Expect = 3.3
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 74 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
+ AGA I G +V+ + + + V
Sbjct: 215 VEGVLEAGALGIAVGRNVWQRRDALKFARALAELV 249
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 24.5 bits (53), Expect = 3.4
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 21 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS- 79
GA+ V+MVL + G ++ + VR + I G P IA A
Sbjct: 82 RGADEVDMVLHLGRAKA-GDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEA 140
Query: 80 ---AGANCIVAGSSVFGAPEPAHVISLMRKSVED 110
GA+ + + ++L+ + +
Sbjct: 141 AIRGGADFLKTSTGFGPRGASLEDVALLVRVAQG 174
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 24.4 bits (52), Expect = 3.5
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 2/78 (2%)
Query: 15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PST 73
E + GQ ++ + + +G + P
Sbjct: 131 EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD-AKVIAEGNVITPDM 189
Query: 74 IAEAASAGANCIVAGSSV 91
G +C V G ++
Sbjct: 190 YKRVMDLGVHCSVVGGAI 207
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 24.1 bits (52), Expect = 4.3
Identities = 9/83 (10%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 16 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMD----KVRSLRNRYPSLDIEVDGGLGP 71
+ P + + + M + G+ K P + +++ + + GG+ P
Sbjct: 113 LLPGISTPSEIMMGYAL----GYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNP 168
Query: 72 STIAEAASAGANCIVAGSSVFGA 94
+ + + V + + +
Sbjct: 169 ANVRNYMALPNVMCVGTTWMLDS 191
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 24.1 bits (51), Expect = 5.0
Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 27 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI 85
+++ G + + + Y + G+ P ++ A AGA
Sbjct: 172 GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGA 231
Query: 86 VAGSSVFGAPEPAHVISLMRKSVEDAQK 113
++GS+ ++ ++ K++ ++
Sbjct: 232 ISGSA---------IVKIIEKNLASPKQ 250
>d2nr7a1 d.2.1.9 (A:1-192) Putative secretion activator PG0293
{Porphyromonas gingivalis [TaxId: 837]}
Length = 192
Score = 23.9 bits (51), Expect = 5.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIV 86
L ++ DG +G T+ SA + +
Sbjct: 110 LGVQADGIVGNKTLQAVNSADPDELF 135
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 23.8 bits (51), Expect = 6.2
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 69 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
+ + EA GA+ ++ F E + + R ++ N
Sbjct: 44 ASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLAN 89
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 23.5 bits (50), Expect = 6.7
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 91
+ + V ++ + GG+ A A+ I+ G+ +
Sbjct: 165 YIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVI 218
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 23.7 bits (50), Expect = 6.7
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 76 EAASAGANCIVAGSSVFG 93
EA G + G+ +FG
Sbjct: 227 EAIRQGTAEVRIGTDIFG 244
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.374
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,292
Number of extensions: 16814
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 34
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)