Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>033626
MDSQSQTTSLQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQ
VTLRDEIKSACEYRPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQTIDECNDTC

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033626
        (115 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230250 - symbol:AT3G01435 species:3702 "Ar...   398  4.9e-37   1


>TAIR|locus:1006230250 [details] [associations]
            symbol:AT3G01435 species:3702 "Arabidopsis thaliana"
            [GO:0001104 "RNA polymerase II transcription cofactor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0016592 "mediator complex" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR019404
            Pfam:PF10280 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016592
            GO:GO:0001104 EMBL:AC010870 EMBL:BT014796 EMBL:BT015691
            EMBL:AK229334 IPI:IPI00545393 RefSeq:NP_974205.1 UniGene:At.47814
            ProteinModelPortal:Q6ID77 IntAct:Q6ID77 PaxDb:Q6ID77 PRIDE:Q6ID77
            EnsemblPlants:AT3G01435.1 GeneID:2745869 KEGG:ath:AT3G01435
            TAIR:At3g01435 eggNOG:NOG284613 InParanoid:Q6ID77 KO:K15131
            OMA:IANEICF PhylomeDB:Q6ID77 ProtClustDB:CLSN2681304
            Genevestigator:Q6ID77 Uniprot:Q6ID77
        Length = 115

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 75/109 (68%), Positives = 88/109 (80%)

Query:     1 MDXXXXXXXXXXXXNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQ 60
             MD            NVE RVV+VLELAGGVM+ELA+P GP+KE +N+HCREFMQ +KDIQ
Sbjct:     1 MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query:    61 VTLRDEIKSACEYRPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQTID 109
             VTLR+EIKSACEYRPFEKCDY+ RI NEIC +KLEYVL+QL+ +KQT D
Sbjct:    61 VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTAD 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115       103   0.00091  102 3  11 22  0.38    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.23u 0.12s 11.35t   Elapsed:  00:00:00
  Total cpu time:  11.23u 0.12s 11.35t   Elapsed:  00:00:00
  Start:  Thu May  9 21:36:20 2013   End:  Thu May  9 21:36:20 2013

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