BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033626
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IDX|A Chain A, Structure Of Human Atp:cobalamin Adenosyltransferase
Bound To Atp.
pdb|2IDX|B Chain B, Structure Of Human Atp:cobalamin Adenosyltransferase
Bound To Atp.
pdb|2IDX|C Chain C, Structure Of Human Atp:cobalamin Adenosyltransferase
Bound To Atp
Length = 196
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G DEL++ +G E++ F + ++ IQ TL+D
Sbjct: 31 AVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQD 69
>pdb|2FTC|G Chain G, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|G Chain G, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 145
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 20 VVRVLELAGGVMDELANPMGP----RKEIINNHCREFMQLIKDIQ 60
V+R + AG M P+GP R IN C+EF + KDI+
Sbjct: 7 VIRAIVRAGLAMP--GPPLGPVLGQRGVSINQFCKEFNERTKDIK 49
>pdb|2R6T|A Chain A, Structure Of A R132k Variant Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Atp
pdb|2R6T|B Chain B, Structure Of A R132k Variant Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Atp
Length = 194
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G +DEL + +G K +IN+H + +++IQ L D
Sbjct: 36 AYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFD 74
>pdb|3CI1|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Four-Coordinate Cob(Ii)alamin And Atp
pdb|3CI3|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Partial Adenosylcobalamin And Pppi
pdb|3CI4|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Four-Coordinate Cob(Ii)inamide And Atp
Length = 194
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G +DEL + +G K +IN+H + +++IQ L D
Sbjct: 36 AYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFD 74
>pdb|3GAI|A Chain A, Structure Of A F112a Variant Pduo-Type Atp:corrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Cobalamin And Atp
Length = 194
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G +DEL + +G K +IN+H + +++IQ L D
Sbjct: 36 AYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFD 74
>pdb|3GAJ|A Chain A, Structure Of A C-Terminal Deletion Variant Of A
Pduo-Type Atp:corrinoid Adenosyltransferase From
Lactobacillus Reuteri Complexed With Cobalamin And Atp
Length = 187
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G +DEL + +G K +IN+H + +++IQ L D
Sbjct: 36 AYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFD 74
>pdb|3GAH|A Chain A, Structure Of A F112h Variant Pduo-Type Atp:corrinoid
Adenosyltransferase From Lactobacillus Reuteri
Complexed With Cobalamin And Atp
Length = 194
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G +DEL + +G K +IN+H + +++IQ L D
Sbjct: 36 AYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFD 74
>pdb|2NT8|A Chain A, Atp Bound At The Active Site Of A Pduo Type
Atp:co(i)rrinoid Adenosyltransferase From Lactobacillus
Reuteri
Length = 223
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 AGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRD 65
A G +DEL + +G K +IN+H + +++IQ L D
Sbjct: 65 AYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFD 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,678,788
Number of Sequences: 62578
Number of extensions: 85939
Number of successful extensions: 294
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 21
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)