BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033626
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ID77|MED11_ARATH Mediator of RNA polymerase II transcription subunit 11
OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1
Length = 115
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 84/109 (77%), Positives = 98/109 (89%)
Query: 1 MDSQSQTTSLQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQ 60
MD Q+Q TSLQRLQNVE RVV+VLELAGGVM+ELA+P GP+KE +N+HCREFMQ +KDIQ
Sbjct: 1 MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60
Query: 61 VTLRDEIKSACEYRPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQTID 109
VTLR+EIKSACEYRPFEKCDY+ RI NEIC +KLEYVL+QL+ +KQT D
Sbjct: 61 VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTAD 109
>sp|Q6P255|MED11_XENTR Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus
tropicalis GN=med11 PE=3 SV=1
Length = 118
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 10 LQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEIKS 69
L+ L+ +E+ + +L AG V+ EL+ P + +++ +F ++ ++ L +I+
Sbjct: 11 LRALEEIEREIAAILLNAGNVILELSKEK-PNERVLDKQATQFTASVQRVESELSGQIRY 69
Query: 70 ACEY---RPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQTIDE 110
+ +P E YS R + +++Y +L + +T D+
Sbjct: 70 LTQVATGQPHEGSSYSARKDGTMALNRIDYARVKLAELSRTCDQ 113
>sp|Q32L03|MED11_BOVIN Mediator of RNA polymerase II transcription subunit 11 OS=Bos
taurus GN=MED11 PE=3 SV=1
Length = 117
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 10 LQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEIKS 69
L+ L+++E+ + +L+ AG V+ EL+ + +++ F ++ ++ L +I+
Sbjct: 11 LRALEDIEREIGAILQNAGTVILELSKEKTNER-LLDRQAAAFTASVQHVEAELSAQIRY 69
Query: 70 ACEY---RPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQT 107
+ +P E YS+R ++ K+L+Y +L + +T
Sbjct: 70 LTQVATGQPHEGSSYSSRKDCQMALKRLDYARLKLSEVART 110
>sp|P12845|MYO2_CAEEL Myosin-2 OS=Caenorhabditis elegans GN=myo-2 PE=2 SV=2
Length = 1947
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 33 ELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEIKSACE-YRPFEKC-----------D 80
E+ + ++E NH + Q I IQ TL E K+ E +R +K D
Sbjct: 1587 EIEKRIAEKEEEFENHRKVHQQTIDSIQATLDSETKAKSELFRVKKKLEADINELEIALD 1646
Query: 81 YSTRILNEICCKKLEYVLSQLDAMKQTIDE 110
++ + NE K + L Q+ ++QT+DE
Sbjct: 1647 HANKA-NEDAQKNIRRYLDQIRELQQTVDE 1675
>sp|Q9P086|MED11_HUMAN Mediator of RNA polymerase II transcription subunit 11 OS=Homo
sapiens GN=MED11 PE=1 SV=2
Length = 117
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 10 LQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEIKS 69
L+ L+++E+ + +L+ AG V+ EL+ + +++ F ++ ++ L +I+
Sbjct: 11 LRALEDIEREIGAILQNAGTVILELSKEK-TNERLLDRQAAAFTASVQHVEAELSAQIRY 69
Query: 70 ACEY---RPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQT 107
+ +P E YS+R ++ K+++Y +L + +T
Sbjct: 70 LTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110
>sp|Q2NF52|Y1170_METST UPF0272 protein Msp_1170 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=Msp_1170 PE=3 SV=1
Length = 406
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 38 MGPRKEIINNHCREFMQLIKDIQVTLRDEIKSA--CEYRPFEKCDYSTRILNEI 89
+G K+ I N + + DI +T+ + KS C Y D STR NEI
Sbjct: 24 LGANKDDIINVIKTYANEFGDIDITITKQPKSGIMCTYAQINTTDKSTRHYNEI 77
>sp|Q9D8C6|MED11_MOUSE Mediator of RNA polymerase II transcription subunit 11 OS=Mus
musculus GN=Med11 PE=3 SV=1
Length = 117
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 10 LQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEIKS 69
L+ L+++E+ + +L+ AG + EL+ + +++ F ++ ++ L +I+
Sbjct: 11 LRALEDIEREIGAILQNAGTAILELSKEK-TNERLLDRQAAAFTTSVQHVEAELSAQIRY 69
Query: 70 ACEY---RPFEKCDYSTRILNEICCKKLEYV 97
+ +P E YS+R ++ K+++Y
Sbjct: 70 LTQVATGQPHEGSSYSSRKDCQMALKRVDYA 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,298,550
Number of Sequences: 539616
Number of extensions: 1277017
Number of successful extensions: 3622
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3621
Number of HSP's gapped (non-prelim): 11
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)