Query 033626
Match_columns 115
No_of_seqs 34 out of 36
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r84_A Mediator of RNA polymer 98.7 4.2E-08 1.4E-12 67.9 7.2 64 7-70 4-70 (86)
2 4gwp_A Mediator of RNA polymer 98.2 6.4E-06 2.2E-10 59.8 7.8 99 1-103 1-107 (115)
3 3rj1_A Mediator of RNA polymer 97.4 2.7E-06 9.2E-11 62.9 -5.2 69 2-70 18-89 (131)
4 4h63_K Mediator of RNA polymer 96.0 0.037 1.3E-06 39.4 7.7 62 6-69 17-78 (112)
5 2epl_X N-acetyl-beta-D-glucosa 67.5 49 0.0017 28.8 10.3 64 40-112 516-581 (627)
6 3mov_A Lamin-B1; LMNB1, B-type 49.3 30 0.001 23.3 4.7 63 4-67 18-81 (95)
7 4abx_A DNA repair protein RECN 43.2 87 0.003 22.2 6.9 25 9-37 40-64 (175)
8 1x8y_A Lamin A/C; structural p 40.7 52 0.0018 21.5 4.7 63 4-67 9-72 (86)
9 1x3u_A Transcriptional regulat 39.0 18 0.00061 21.5 2.1 48 8-56 12-59 (79)
10 1gk4_A Vimentin; intermediate 37.3 82 0.0028 20.3 5.3 63 4-67 7-70 (84)
11 4a5x_A MITD1, MIT domain-conta 35.9 48 0.0016 21.6 3.9 63 1-63 9-80 (86)
12 3e7l_A Transcriptional regulat 35.0 23 0.00079 21.1 2.1 38 11-48 14-52 (63)
13 3ewt_E Tumor necrosis factor r 31.5 32 0.0011 18.4 2.1 17 79-95 1-17 (25)
14 4fla_A Regulation of nuclear P 30.8 1.1E+02 0.0038 22.1 5.6 29 42-70 119-147 (152)
15 1i6z_A BAG-family molecular ch 30.7 1.5E+02 0.0053 21.4 6.9 95 7-113 17-124 (135)
16 1qbj_A Protein (double-strande 29.8 26 0.00088 22.6 1.8 41 9-49 4-48 (81)
17 2kfe_A Meucin-24; alpha-helix, 24.2 63 0.0022 17.6 2.4 20 50-69 4-23 (26)
18 2o8x_A Probable RNA polymerase 23.7 20 0.00069 20.6 0.4 50 8-57 11-60 (70)
19 3mzy_A RNA polymerase sigma-H 23.6 38 0.0013 21.9 1.7 45 12-57 109-153 (164)
20 3c57_A Two component transcrip 22.6 21 0.00073 22.8 0.3 47 9-56 24-70 (95)
21 4ioe_A Secreted protein ESXB; 22.1 1.4E+02 0.0048 18.1 8.2 57 11-67 19-83 (93)
22 1h6g_A Alpha-1 catenin; adhesi 21.8 2.6E+02 0.009 21.1 8.6 61 2-62 189-252 (256)
23 3hfe_A Potassium voltage-gated 21.8 64 0.0022 18.2 2.2 17 7-23 6-22 (31)
24 1qgp_A Protein (double strande 21.5 55 0.0019 20.5 2.2 40 12-51 11-54 (77)
No 1
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=98.71 E-value=4.2e-08 Score=67.92 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHhhcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033626 7 TTSLQRLQNVEKRVVRVLELAGGVMDELANPMG---PRKEIINNHCREFMQLIKDIQVTLRDEIKSA 70 (115)
Q Consensus 7 ~~sLqrL~~VEkkIV~~le~Ag~vMeELs~~~g---pr~~~v~~~c~eFm~~vKeI~~~L~~~I~s~ 70 (115)
..+|+.|+.|.++||.+|+.|++++..|+++-. ..+++|..|+++|+..+.+|...||.||+.+
T Consensus 4 qERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~L 70 (86)
T 3r84_A 4 QERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLL 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999997632 3459999999999999999999999999997
No 2
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=98.18 E-value=6.4e-06 Score=59.79 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 033626 1 MDSQSQTTSLQRLQNVEKRVVRVLELAGGVMDELANPM---GPRKEIINNHCREFMQLIKDIQVTLRDEIKSACE----- 72 (115)
Q Consensus 1 m~~~~q~~sLqrL~~VEkkIV~~le~Ag~vMeELs~~~---gpr~~~v~~~c~eFm~~vKeI~~~L~~~I~s~~e----- 72 (115)
|-|+.=..+|..|+.|..+||..|+.|..+++-++..- ...+..|..|+++|+..+.++-+.||.|||.+-|
T Consensus 1 mqp~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~lDeNiG~~ 80 (115)
T 4gwp_A 1 MQPPYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTR 80 (115)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Confidence 77888889999999999999999999999998887532 2567999999999999999999999999999743
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 033626 73 YRPFEKCDYSTRILNEICCKKLEYVLSQLDA 103 (115)
Q Consensus 73 yrPfe~s~Y~~r~~~Ei~~~k~e~v~~qL~~ 103 (115)
..|-.- -.++.-.--+|+..-+.+|+.
T Consensus 81 lLPInV----dkKa~~~~~~Kl~eqi~~L~~ 107 (115)
T 4gwp_A 81 LLPINV----NKKALGQDTEKMEEQLDLLSA 107 (115)
T ss_dssp SSCCSS----CCCCCTHHHHHHHHHHHHHHH
T ss_pred Eecccc----ccccccccHHHHHHHHHHHHH
Confidence 334321 123334445666544444443
No 3
>3rj1_A Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae}
Probab=97.38 E-value=2.7e-06 Score=62.91 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=59.7
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033626 2 DSQSQTTSLQRLQNVEKRVVRVLELAGGVMDELANPMG---PRKEIINNHCREFMQLIKDIQVTLRDEIKSA 70 (115)
Q Consensus 2 ~~~~q~~sLqrL~~VEkkIV~~le~Ag~vMeELs~~~g---pr~~~v~~~c~eFm~~vKeI~~~L~~~I~s~ 70 (115)
-|++=..+|+.|+.|..+||..|+.|+.++.-|+++.. .-+++|..|+++|+..+.+|-..||.||+-+
T Consensus 18 q~~~IqERL~sL~~ID~~ivsLL~~aS~~~~tls~~k~g~~~~K~qF~~~t~~fy~~L~~v~v~LRkEIk~L 89 (131)
T 3rj1_A 18 QPPYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLL 89 (131)
T ss_dssp ---CHHHHTTTTTTTTTTTHHHHSTTTHHHHHHHHSCCSTTTTHHHHHHHHHHHHGGGTTTTTTTTTTTSST
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555789999999999999999999999999987533 3459999999999999999999999999986
No 4
>4h63_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=95.95 E-value=0.037 Score=39.44 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=53.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033626 6 QTTSLQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEIKS 69 (115)
Q Consensus 6 q~~sLqrL~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~vKeI~~~L~~~I~s 69 (115)
-.+-|+-.-++|+||-.+|-.||.-++-.-- ..+-+.|..|+++|..-|.=|-|+|+.+.--
T Consensus 17 ~T~~~~~I~EiE~rIPDILsSA~~CIEAI~~--~~SiE~F~~~sr~F~~TVEFiSTGL~RQ~L~ 78 (112)
T 4h63_K 17 DTQQVQNILELEAKIPDILSSAGKCIEAIQL--NNSLEDFRKYSKEFLETVEFISTGLRRQALE 78 (112)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456788889999999999999999987643 4678999999999999999999999988654
No 5
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=67.49 E-value=49 Score=28.82 Aligned_cols=64 Identities=8% Similarity=0.050 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-hhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033626 40 PRKEIINNHCREFMQLI-KDIQVTLRDEIKS-ACEYRPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQTIDECN 112 (115)
Q Consensus 40 pr~~~v~~~c~eFm~~v-KeI~~~L~~~I~s-~~eyrPfe~s~Y~~r~~~Ei~~~k~e~v~~qL~~l~~~i~~~~ 112 (115)
++...+..-++.+...+ .+++.-...+=+. +.++||| .+|+..-|.--++++++..++.|.+|-
T Consensus 516 ~d~~~l~~l~~~~~~~l~~~~~~l~~~~~~~Wl~~~kp~---------Gle~~~~R~~g~~~R~~~~~~r~~~~~ 581 (627)
T 2epl_X 516 GDKEHLSALAEKDFPQLYQMVEDFSDQFSRQWQQENKIF---------GLDTIDIRFGGLLKRIKRAQERLEQFI 581 (627)
T ss_dssp TCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHBCST---------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC---------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666566555533 4444433333333 7999999 567778888888999999999999885
No 6
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=49.29 E-value=30 Score=23.32 Aligned_cols=63 Identities=14% Similarity=0.303 Sum_probs=44.4
Q ss_pred hhhhhhhH-HHHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033626 4 QSQTTSLQ-RLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEI 67 (115)
Q Consensus 4 ~~q~~sLq-rL~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~vKeI~~~L~~~I 67 (115)
+.|+.+|+ +|.++|.+...-++-....+..|-....-...-...+.+++- .+-+|...|--+|
T Consensus 18 q~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~Le~EI 81 (95)
T 3mov_A 18 QKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE-QLLDVKLALDMEI 81 (95)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 56788887 599999998888888888887776664444455666777764 4445666665554
No 7
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=43.24 E-value=87 Score=22.25 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 033626 9 SLQRLQNVEKRVVRVLELAGGVMDELANP 37 (115)
Q Consensus 9 sLqrL~~VEkkIV~~le~Ag~vMeELs~~ 37 (115)
...+|.|.|+ +.+.++.+.+-|.+.
T Consensus 40 e~~rL~nae~----l~~~~~~a~~~L~~~ 64 (175)
T 4abx_A 40 ELSRLSNLHT----IAQAAAGGVELLSDG 64 (175)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHTTS
T ss_pred HHHHHHCHHH----HHHHHHHHHHHHhCC
Confidence 3467888776 344455555555543
No 8
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.68 E-value=52 Score=21.46 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=40.7
Q ss_pred hhhhhhhHH-HHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033626 4 QSQTTSLQR-LQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEI 67 (115)
Q Consensus 4 ~~q~~sLqr-L~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~vKeI~~~L~~~I 67 (115)
++|+.+|+. |.++|.+.-.-++-+...+.+|-....--..-...+.+++-.+ =+|...|--+|
T Consensus 9 ~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L-lnvK~~Le~EI 72 (86)
T 1x8y_A 9 QCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL-LDIKLALDMEI 72 (86)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHH
Confidence 567777764 8888988888888888888877544333344556667777444 35666666555
No 9
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.01 E-value=18 Score=21.52 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 033626 8 TSLQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLI 56 (115)
Q Consensus 8 ~sLqrL~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~v 56 (115)
..|..|..-|+.|+..+ ..|-...|.|...|-+...|..+-..-+.-+
T Consensus 12 ~~l~~L~~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 12 ARLQTLSERERQVLSAV-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HHHHHHCHHHHHHHHHH-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45778889999999886 8899999999999999999988877766655
No 10
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=37.27 E-value=82 Score=20.27 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=45.0
Q ss_pred hhhhhhhHH-HHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033626 4 QSQTTSLQR-LQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIKDIQVTLRDEI 67 (115)
Q Consensus 4 ~~q~~sLqr-L~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~vKeI~~~L~~~I 67 (115)
.+|+.+|++ |.++|.+--..+.-+...+.+|-....-...-...+.+++-.++ +|...|--+|
T Consensus 7 ~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll-nvK~~Ld~EI 70 (84)
T 1gk4_A 7 KGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL-NVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence 357777765 88899988888888888888776665544556677777874444 5666676666
No 11
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.85 E-value=48 Score=21.59 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=32.1
Q ss_pred CCchhhhhhhHHHHHHH----HHHHHHHHHhHHHHHhhcCCC----C-CCHHHHHHHHHHHHHHHHHHHHHH
Q 033626 1 MDSQSQTTSLQRLQNVE----KRVVRVLELAGGVMDELANPM----G-PRKEIINNHCREFMQLIKDIQVTL 63 (115)
Q Consensus 1 m~~~~q~~sLqrL~~VE----kkIV~~le~Ag~vMeELs~~~----g-pr~~~v~~~c~eFm~~vKeI~~~L 63 (115)
||||+=....-.-..|| ++.-.++.+.-.+++-|-... . .+.+.+...|.+.+.-...|..-|
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l 80 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYL 80 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775433333333333 234456666666666543221 1 223567777777777766666544
No 12
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.97 E-value=23 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=25.4
Q ss_pred HHHHHHHHH-HHHHHHHhHHHHHhhcCCCCCCHHHHHHH
Q 033626 11 QRLQNVEKR-VVRVLELAGGVMDELANPMGPRKEIINNH 48 (115)
Q Consensus 11 qrL~~VEkk-IV~~le~Ag~vMeELs~~~gpr~~~v~~~ 48 (115)
+.++.+|+. |.++|+..++.+.+.|...|-+...+...
T Consensus 14 ~~l~~~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rk 52 (63)
T 3e7l_A 14 EAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHH
Confidence 458889995 56788888877777666666444444333
No 13
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=31.46 E-value=32 Score=18.44 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHHHHH
Q 033626 79 CDYSTRILNEICCKKLE 95 (115)
Q Consensus 79 s~Y~~r~~~Ei~~~k~e 95 (115)
|.|.++|+-+++++.+.
T Consensus 1 skyIp~IAe~M~~~~Vk 17 (25)
T 3ewt_E 1 SKYITTIAGVMTLSQVK 17 (26)
T ss_pred CCchhHHHHHHhHHHHH
Confidence 67999999999988764
No 14
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.75 E-value=1.1e+02 Score=22.07 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033626 42 KEIINNHCREFMQLIKDIQVTLRDEIKSA 70 (115)
Q Consensus 42 ~~~v~~~c~eFm~~vKeI~~~L~~~I~s~ 70 (115)
.+.+-..+++|+.-|+.+.++|.++|.++
T Consensus 119 ~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 119 KEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 36677789999999999999999999876
No 15
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=30.70 E-value=1.5e+02 Score=21.45 Aligned_cols=95 Identities=16% Similarity=0.290 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHh---hcCCCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 033626 7 TTSLQRLQNVEKRVVRVLELAGGVMDE---LANPMGPRK----------EIINNHCREFMQLIKDIQVTLRDEIKSACEY 73 (115)
Q Consensus 7 ~~sLqrL~~VEkkIV~~le~Ag~vMeE---Ls~~~gpr~----------~~v~~~c~eFm~~vKeI~~~L~~~I~s~~ey 73 (115)
-..|..|-.||+.+..+-..=.+.-++ +..--=+.+ ..+.....+||+.+.. +++++=
T Consensus 17 e~~lKkL~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~--------LDs~~i- 87 (135)
T 1i6z_A 17 EVELKKLKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEE--------IDTMVL- 87 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--------hccccC-
Confidence 456777788888766543333333333 322211211 3344455555555433 333321
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033626 74 RPFEKCDYSTRILNEICCKKLEYVLSQLDAMKQTIDECND 113 (115)
Q Consensus 74 rPfe~s~Y~~r~~~Ei~~~k~e~v~~qL~~l~~~i~~~~~ 113 (115)
|.... .+|.--=-..+++--.+.+-|++-..|.+|.+
T Consensus 88 -p~~~~--~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~ 124 (135)
T 1i6z_A 88 -PEQFK--DSRLKRKNLVKKVQVFLAECDTVEQYICQETE 124 (135)
T ss_dssp -CSCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 44444444488888888888888888776643
No 16
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.78 E-value=26 Score=22.61 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHhH----HHHHhhcCCCCCCHHHHHHHH
Q 033626 9 SLQRLQNVEKRVVRVLELAG----GVMDELANPMGPRKEIINNHC 49 (115)
Q Consensus 9 sLqrL~~VEkkIV~~le~Ag----~vMeELs~~~gpr~~~v~~~c 49 (115)
.|..-++++++|..+|...| ....|||...|-+...|+.+-
T Consensus 4 ~~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 4 MLSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp --CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 45566788999999998877 567888888886666666553
No 17
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=24.19 E-value=63 Score=17.58 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033626 50 REFMQLIKDIQVTLRDEIKS 69 (115)
Q Consensus 50 ~eFm~~vKeI~~~L~~~I~s 69 (115)
+|||+-||+.-.+--|.|+.
T Consensus 4 kei~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHc
Confidence 68999999988887777753
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.70 E-value=20 Score=20.61 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHHH
Q 033626 8 TSLQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIK 57 (115)
Q Consensus 8 ~sLqrL~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~vK 57 (115)
..|..|..-++.|+...-.-|-...|.|...|-+...|..+-+.-+..++
T Consensus 11 ~~l~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 11 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp TTTTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 34566778889998777788999999999999888888877766655553
No 19
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.60 E-value=38 Score=21.87 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHHH
Q 033626 12 RLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLIK 57 (115)
Q Consensus 12 rL~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~vK 57 (115)
.|..-++.|+. +-.-|-...|.|...|-+...|.++-..-+..++
T Consensus 109 ~L~~~~r~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 66778888888 8889999999999999888888877666555543
No 20
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.56 E-value=21 Score=22.75 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 033626 9 SLQRLQNVEKRVVRVLELAGGVMDELANPMGPRKEIINNHCREFMQLI 56 (115)
Q Consensus 9 sLqrL~~VEkkIV~~le~Ag~vMeELs~~~gpr~~~v~~~c~eFm~~v 56 (115)
.|..|..-|+.|+..+ ..|-...|.|...|-+...|..+-..-+.-+
T Consensus 24 ~l~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 24 PLSGLTDQERTLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp ---CCCHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3556778899999887 8899999999999999999988877665544
No 21
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.07 E-value=1.4e+02 Score=18.05 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhc-CCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 033626 11 QRLQNVEKRVVRVLELAGGVMDELA-NPMGPRKEIINN-------HCREFMQLIKDIQVTLRDEI 67 (115)
Q Consensus 11 qrL~~VEkkIV~~le~Ag~vMeELs-~~~gpr~~~v~~-------~c~eFm~~vKeI~~~L~~~I 67 (115)
.++.+.-..|-..+..--..++.|. .=.|+....|.. ...+|...+.+|...|+.-.
T Consensus 19 ~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A 83 (93)
T 4ioe_A 19 GNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777777774 344677788887 55555555555555554443
No 22
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=21.82 E-value=2.6e+02 Score=21.13 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=46.1
Q ss_pred CchhhhhhhHHHHHHHHH-HHHHHHHhHHHHHhhcCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q 033626 2 DSQSQTTSLQRLQNVEKR-VVRVLELAGGVMDELANPMG--PRKEIINNHCREFMQLIKDIQVT 62 (115)
Q Consensus 2 ~~~~q~~sLqrL~~VEkk-IV~~le~Ag~vMeELs~~~g--pr~~~v~~~c~eFm~~vKeI~~~ 62 (115)
||..+...++.-+.++.- +-+.++-|-.+++-|+..-+ .....|-..++..+..+++|...
T Consensus 189 d~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~a~~~L~~~v~~vr~a 252 (256)
T 1h6g_A 189 PGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKA 252 (256)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888886 45578888888777664422 33688888999999999888764
No 23
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=21.80 E-value=64 Score=18.22 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q 033626 7 TTSLQRLQNVEKRVVRV 23 (115)
Q Consensus 7 ~~sLqrL~~VEkkIV~~ 23 (115)
+|-=.||+-||.||...
T Consensus 6 nTIGaRLnRvE~k~t~M 22 (31)
T 3hfe_A 6 NTIGARLNRVEDKVTQL 22 (31)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45557999999999853
No 24
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.48 E-value=55 Score=20.47 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhH----HHHHhhcCCCCCCHHHHHHHHHH
Q 033626 12 RLQNVEKRVVRVLELAG----GVMDELANPMGPRKEIINNHCRE 51 (115)
Q Consensus 12 rL~~VEkkIV~~le~Ag----~vMeELs~~~gpr~~~v~~~c~e 51 (115)
--.++|++|..+|...| ....|||...|-+...|+.+-..
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34567899999998887 57789999988777777776544
Done!