Query 033628
Match_columns 115
No_of_seqs 135 out of 1539
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723 Molecular chaperone (D 100.0 3.1E-30 6.8E-35 174.1 11.5 106 4-109 1-110 (112)
2 PF03656 Pam16: Pam16; InterP 99.9 1.2E-27 2.7E-32 167.1 6.0 106 4-109 1-112 (127)
3 PTZ00100 DnaJ chaperone protei 99.9 8E-26 1.7E-30 155.7 12.8 102 4-106 1-116 (116)
4 KOG3442 Uncharacterized conser 99.9 6E-22 1.3E-26 136.9 7.9 105 5-109 1-113 (132)
5 COG0484 DnaJ DnaJ-class molecu 99.7 5.5E-17 1.2E-21 130.2 5.7 60 52-111 1-64 (371)
6 PHA03102 Small T antigen; Revi 99.6 3.6E-16 7.8E-21 112.5 6.8 60 53-112 3-64 (153)
7 PTZ00037 DnaJ_C chaperone prot 99.6 1.4E-15 2.9E-20 124.2 6.6 64 48-111 21-84 (421)
8 smart00271 DnaJ DnaJ molecular 99.6 5.5E-15 1.2E-19 89.4 6.3 53 56-108 2-59 (60)
9 KOG0713 Molecular chaperone (D 99.5 4.1E-15 9E-20 117.6 4.9 61 51-111 12-76 (336)
10 cd06257 DnaJ DnaJ domain or J- 99.5 1.3E-14 2.8E-19 86.2 5.9 51 56-106 1-55 (55)
11 PF00226 DnaJ: DnaJ domain; I 99.5 2.3E-14 5.1E-19 87.9 6.3 56 56-111 1-61 (64)
12 PRK14296 chaperone protein Dna 99.5 1.1E-14 2.5E-19 117.0 5.5 60 52-111 1-63 (372)
13 PRK14288 chaperone protein Dna 99.5 3.9E-14 8.5E-19 113.8 5.0 57 55-111 3-63 (369)
14 PRK14286 chaperone protein Dna 99.5 4.8E-14 1E-18 113.4 4.9 60 52-111 1-64 (372)
15 PRK14299 chaperone protein Dna 99.5 6.2E-14 1.3E-18 109.4 5.2 59 52-110 1-62 (291)
16 PRK14279 chaperone protein Dna 99.5 7.5E-14 1.6E-18 113.0 5.7 58 54-111 8-69 (392)
17 PRK14287 chaperone protein Dna 99.5 8.1E-14 1.8E-18 112.0 5.5 59 53-111 2-63 (371)
18 PRK14282 chaperone protein Dna 99.4 1E-13 2.2E-18 111.3 5.3 60 52-111 1-65 (369)
19 PRK14276 chaperone protein Dna 99.4 1.4E-13 3E-18 111.0 5.5 59 53-111 2-63 (380)
20 PRK14285 chaperone protein Dna 99.4 1.8E-13 3.9E-18 109.8 5.3 57 55-111 3-63 (365)
21 PRK14298 chaperone protein Dna 99.4 2.2E-13 4.7E-18 109.8 5.8 58 54-111 4-64 (377)
22 PRK14280 chaperone protein Dna 99.4 1.8E-13 3.9E-18 110.1 5.3 60 52-111 1-63 (376)
23 PRK10767 chaperone protein Dna 99.4 1.9E-13 4.2E-18 109.6 5.3 60 52-111 1-64 (371)
24 PRK14294 chaperone protein Dna 99.4 1.7E-13 3.8E-18 109.8 4.9 60 52-111 1-64 (366)
25 PHA02624 large T antigen; Prov 99.4 3.7E-13 8E-18 113.9 7.0 60 54-113 10-71 (647)
26 PRK14283 chaperone protein Dna 99.4 2.3E-13 4.9E-18 109.6 5.3 58 54-111 4-64 (378)
27 PRK14297 chaperone protein Dna 99.4 2.8E-13 6.2E-18 109.1 5.8 58 54-111 3-64 (380)
28 PRK14301 chaperone protein Dna 99.4 2.6E-13 5.7E-18 109.2 5.4 59 53-111 2-64 (373)
29 KOG0712 Molecular chaperone (D 99.4 2.2E-13 4.7E-18 108.4 4.6 56 56-111 5-61 (337)
30 PRK14278 chaperone protein Dna 99.4 2.4E-13 5.3E-18 109.5 5.0 57 55-111 3-62 (378)
31 PRK10266 curved DNA-binding pr 99.4 2.9E-13 6.3E-18 106.2 5.2 60 52-111 1-63 (306)
32 PRK14295 chaperone protein Dna 99.4 3.6E-13 7.8E-18 108.9 5.7 57 55-111 9-69 (389)
33 PRK09430 djlA Dna-J like membr 99.4 9.6E-13 2.1E-17 101.9 7.5 58 50-107 195-263 (267)
34 PRK14281 chaperone protein Dna 99.4 4.8E-13 1E-17 108.4 6.0 57 55-111 3-63 (397)
35 PRK14277 chaperone protein Dna 99.4 4.5E-13 9.8E-18 108.2 5.0 57 55-111 5-65 (386)
36 PRK14291 chaperone protein Dna 99.4 9.3E-13 2E-17 106.2 6.0 57 55-111 3-62 (382)
37 PRK14300 chaperone protein Dna 99.4 1E-12 2.3E-17 105.6 6.0 57 55-111 3-62 (372)
38 KOG0721 Molecular chaperone (D 99.3 1.2E-12 2.5E-17 98.6 5.4 59 53-111 97-159 (230)
39 TIGR02349 DnaJ_bact chaperone 99.3 1.7E-12 3.7E-17 103.5 5.6 55 57-111 2-59 (354)
40 PRK14284 chaperone protein Dna 99.3 1.7E-12 3.7E-17 105.0 5.7 56 56-111 2-61 (391)
41 PRK14292 chaperone protein Dna 99.3 2.3E-12 4.9E-17 103.5 6.2 56 56-111 3-61 (371)
42 KOG0717 Molecular chaperone (D 99.3 2.9E-12 6.2E-17 105.0 6.4 60 52-111 5-69 (508)
43 PRK14289 chaperone protein Dna 99.3 1.9E-12 4.1E-17 104.5 5.2 59 53-111 3-65 (386)
44 PRK14290 chaperone protein Dna 99.3 2.4E-12 5.2E-17 103.3 5.7 57 55-111 3-64 (365)
45 KOG0716 Molecular chaperone (D 99.3 5.3E-12 1.1E-16 97.6 7.2 59 53-111 29-91 (279)
46 KOG0715 Molecular chaperone (D 99.3 3.1E-12 6.6E-17 100.1 5.0 62 50-111 38-102 (288)
47 PRK14293 chaperone protein Dna 99.3 5.7E-12 1.2E-16 101.4 5.3 57 55-111 3-62 (374)
48 KOG0718 Molecular chaperone (D 99.2 2.9E-11 6.2E-16 99.5 6.1 59 53-111 7-72 (546)
49 COG2214 CbpA DnaJ-class molecu 99.2 5.7E-11 1.2E-15 85.4 6.0 59 53-111 4-67 (237)
50 KOG0691 Molecular chaperone (D 99.1 6.4E-11 1.4E-15 93.1 5.6 58 54-111 4-65 (296)
51 PRK01356 hscB co-chaperone Hsc 99.1 1E-10 2.2E-15 85.1 5.2 56 56-111 3-67 (166)
52 PTZ00341 Ring-infected erythro 99.1 8.5E-11 1.9E-15 103.5 5.6 59 53-111 571-632 (1136)
53 TIGR03835 termin_org_DnaJ term 99.1 8.2E-11 1.8E-15 101.6 5.4 57 55-111 2-61 (871)
54 PRK05014 hscB co-chaperone Hsc 99.1 1.4E-10 2.9E-15 84.8 5.6 56 56-111 2-68 (171)
55 PRK00294 hscB co-chaperone Hsc 99.1 2.7E-10 5.9E-15 83.5 5.3 58 54-111 3-71 (173)
56 PRK03578 hscB co-chaperone Hsc 99.0 3.3E-10 7.1E-15 83.2 5.5 57 55-111 6-73 (176)
57 KOG0719 Molecular chaperone (D 99.0 3.6E-10 7.8E-15 86.2 4.1 56 56-111 15-76 (264)
58 KOG1789 Endocytosis protein RM 98.9 5.1E-09 1.1E-13 93.3 9.5 56 50-105 1276-1336(2235)
59 KOG0722 Molecular chaperone (D 98.8 2.4E-09 5.1E-14 83.0 3.1 58 54-111 32-92 (329)
60 KOG0720 Molecular chaperone (D 98.8 3.3E-09 7.2E-14 87.2 3.9 57 55-111 235-294 (490)
61 PRK01773 hscB co-chaperone Hsc 98.7 1.3E-08 2.8E-13 74.6 4.7 56 56-111 3-69 (173)
62 KOG0550 Molecular chaperone (D 98.7 1.8E-08 3.8E-13 82.5 4.2 60 54-113 372-436 (486)
63 KOG0624 dsRNA-activated protei 98.6 3.4E-08 7.3E-13 79.9 4.9 60 53-112 392-458 (504)
64 TIGR00714 hscB Fe-S protein as 98.6 6.2E-08 1.3E-12 69.9 5.0 45 67-111 3-56 (157)
65 COG5407 SEC63 Preprotein trans 98.6 1.5E-07 3.2E-12 77.9 7.0 55 57-111 100-163 (610)
66 KOG0714 Molecular chaperone (D 98.5 7.1E-08 1.5E-12 72.4 3.5 57 55-111 3-64 (306)
67 KOG0568 Molecular chaperone (D 98.5 2.8E-07 6.2E-12 70.9 6.4 52 54-105 46-100 (342)
68 KOG1150 Predicted molecular ch 98.4 3.2E-07 6.9E-12 69.1 4.1 53 56-108 54-111 (250)
69 COG5269 ZUO1 Ribosome-associat 97.7 7.4E-05 1.6E-09 58.8 4.9 58 55-112 43-109 (379)
70 COG1076 DjlA DnaJ-domain-conta 97.5 0.00011 2.4E-09 53.6 3.9 50 55-104 113-173 (174)
71 PF13446 RPT: A repeated domai 97.2 0.0027 5.8E-08 38.6 6.6 48 51-105 1-48 (62)
72 KOG3192 Mitochondrial J-type c 96.9 0.0018 3.9E-08 47.0 4.4 60 53-112 6-76 (168)
73 KOG0431 Auxilin-like protein a 96.2 0.0056 1.2E-07 51.0 3.8 38 66-103 399-443 (453)
74 PF11833 DUF3353: Protein of u 95.7 0.014 3.1E-07 43.5 3.9 40 64-107 1-40 (194)
75 COG1076 DjlA DnaJ-domain-conta 93.4 0.052 1.1E-06 39.5 1.9 45 67-111 15-68 (174)
76 PF02529 PetG: Cytochrome B6-F 84.5 3 6.6E-05 23.1 4.0 32 4-35 1-33 (37)
77 PRK00665 petG cytochrome b6-f 83.4 3.1 6.7E-05 23.0 3.7 32 4-35 1-33 (37)
78 CHL00008 petG cytochrome b6/f 83.3 3.2 6.9E-05 23.0 3.8 32 4-35 1-33 (37)
79 PF14687 DUF4460: Domain of un 77.4 3.5 7.6E-05 28.1 3.3 24 67-90 6-29 (112)
80 PF03820 Mtc: Tricarboxylate c 63.7 8.8 0.00019 30.7 3.3 64 50-113 25-124 (308)
81 COG5552 Uncharacterized conser 63.5 38 0.00081 21.9 5.9 26 58-83 6-31 (88)
82 KOG3767 Sideroflexin [General 61.0 9.8 0.00021 30.7 3.1 63 51-113 44-142 (328)
83 TIGR00824 EIIA-man PTS system, 51.1 33 0.00071 23.0 4.0 37 58-94 30-75 (116)
84 PF12728 HTH_17: Helix-turn-he 50.1 13 0.00029 20.8 1.7 15 52-66 2-16 (51)
85 KOG0724 Zuotin and related mol 49.6 25 0.00055 27.6 3.8 43 67-109 4-54 (335)
86 PF13950 Epimerase_Csub: UDP-g 45.6 49 0.0011 19.9 3.8 33 53-86 28-60 (62)
87 PF13955 Fst_toxin: Toxin Fst, 45.3 14 0.00029 18.1 1.0 14 2-15 2-15 (21)
88 TIGR01764 excise DNA binding d 45.3 15 0.00032 19.8 1.4 15 52-66 2-16 (49)
89 PRK09649 RNA polymerase sigma 44.3 24 0.00051 25.1 2.6 37 50-86 145-181 (185)
90 PF12669 P12: Virus attachment 42.7 36 0.00078 20.4 2.9 21 9-29 3-25 (58)
91 smart00427 H2B Histone H2B. 38.9 74 0.0016 21.0 4.1 15 77-91 8-22 (89)
92 PF13543 KSR1-SAM: SAM like do 38.2 1.4E+02 0.003 20.9 5.8 85 15-104 35-128 (129)
93 PF13374 TPR_10: Tetratricopep 37.5 23 0.0005 18.1 1.3 18 69-86 25-42 (42)
94 PF04967 HTH_10: HTH DNA bindi 34.6 40 0.00086 19.9 2.1 32 49-80 21-52 (53)
95 PF04719 TAFII28: hTAFII28-lik 34.6 39 0.00085 22.2 2.3 25 55-79 63-90 (90)
96 KOG3960 Myogenic helix-loop-he 34.3 28 0.00062 27.4 1.8 15 92-106 128-142 (284)
97 PF03206 NifW: Nitrogen fixati 34.0 1.5E+02 0.0032 20.0 6.4 55 52-106 12-76 (105)
98 PF05344 DUF746: Domain of Unk 33.5 83 0.0018 19.6 3.5 38 48-86 10-47 (65)
99 PF14019 DUF4235: Protein of u 33.3 1.1E+02 0.0024 19.3 4.1 27 7-33 3-29 (78)
100 PF08447 PAS_3: PAS fold; Int 33.3 23 0.0005 21.3 1.0 29 55-87 6-35 (91)
101 KOG3219 Transcription initiati 33.2 44 0.00096 25.1 2.6 30 54-83 150-182 (195)
102 KOG1573 Aldehyde reductase [Ge 33.0 91 0.002 23.2 4.2 39 49-87 70-115 (204)
103 PF04512 Baculo_PEP_N: Baculov 32.4 41 0.0009 22.5 2.1 34 53-87 18-51 (97)
104 PRK12547 RNA polymerase sigma 32.3 52 0.0011 22.7 2.8 31 52-82 129-159 (164)
105 cd04762 HTH_MerR-trunc Helix-T 32.1 32 0.00069 18.2 1.3 15 52-66 1-15 (49)
106 COG1072 CoaA Panthothenate kin 31.8 87 0.0019 24.9 4.2 36 49-84 22-57 (283)
107 PF08673 RsbU_N: Phosphoserine 30.0 92 0.002 19.7 3.4 24 64-87 32-55 (77)
108 PRK13798 putative OHCU decarbo 29.8 58 0.0013 23.6 2.7 11 92-102 99-109 (166)
109 PF01466 Skp1: Skp1 family, di 29.5 80 0.0017 19.6 3.0 23 52-74 46-68 (78)
110 KOG2070 Guanine nucleotide exc 29.0 43 0.00094 29.0 2.2 32 74-105 248-282 (661)
111 PF10883 DUF2681: Protein of u 28.8 1.3E+02 0.0029 19.6 4.1 23 8-30 6-28 (87)
112 cd04761 HTH_MerR-SF Helix-Turn 28.5 38 0.00083 18.3 1.3 30 52-87 1-30 (49)
113 PRK12529 RNA polymerase sigma 28.2 67 0.0015 22.5 2.8 31 51-81 143-173 (178)
114 PLN00158 histone H2B; Provisio 27.0 1.4E+02 0.0031 20.6 4.1 16 76-91 33-48 (116)
115 COG3763 Uncharacterized protei 26.6 1.7E+02 0.0038 18.5 7.5 19 63-81 51-69 (71)
116 PF07709 SRR: Seven Residue Re 26.5 62 0.0013 13.7 1.5 11 94-104 3-13 (14)
117 cd06170 LuxR_C_like C-terminal 26.5 65 0.0014 17.5 2.1 30 50-83 14-43 (57)
118 cd08048 TAF11 TATA Binding Pro 26.5 80 0.0017 20.4 2.7 16 64-79 69-84 (85)
119 PRK00810 nifW nitrogenase stab 26.5 2.2E+02 0.0047 19.5 5.7 33 52-84 16-53 (113)
120 PRK11677 hypothetical protein; 26.0 1E+02 0.0022 21.7 3.3 28 1-28 1-28 (134)
121 PF05373 Pro_3_hydrox_C: L-pro 25.5 66 0.0014 21.7 2.2 58 48-105 21-94 (101)
122 PRK08570 rpl19e 50S ribosomal 25.2 1E+02 0.0022 22.2 3.2 36 67-102 36-71 (150)
123 COG2879 Uncharacterized small 25.1 66 0.0014 20.0 2.0 17 74-90 26-42 (65)
124 PF07739 TipAS: TipAS antibiot 25.0 96 0.0021 20.0 2.9 39 60-101 49-88 (118)
125 TIGR03759 conj_TIGR03759 integ 24.5 88 0.0019 23.6 2.9 48 56-105 38-86 (200)
126 PRK09636 RNA polymerase sigma 24.4 1.6E+02 0.0035 22.5 4.5 34 50-83 130-163 (293)
127 smart00421 HTH_LUXR helix_turn 24.0 79 0.0017 17.0 2.1 29 51-83 18-46 (58)
128 TIGR03180 UraD_2 OHCU decarbox 23.8 91 0.002 22.3 2.8 11 92-102 94-104 (158)
129 PF15178 TOM_sub5: Mitochondri 23.8 98 0.0021 18.1 2.4 22 59-80 3-24 (51)
130 cd00481 Ribosomal_L19e Ribosom 23.6 1.2E+02 0.0025 21.8 3.3 36 67-102 33-68 (145)
131 PHA01083 hypothetical protein 23.6 1.6E+02 0.0034 21.3 3.9 41 44-84 36-89 (149)
132 cd01388 SOX-TCF_HMG-box SOX-TC 23.3 1.4E+02 0.0031 17.8 3.3 33 75-108 15-47 (72)
133 TIGR00798 mtc tricarboxylate c 22.9 1.3E+02 0.0028 24.3 3.7 62 52-113 36-132 (318)
134 PF04282 DUF438: Family of unk 22.6 47 0.001 20.9 1.0 26 60-85 6-31 (71)
135 PRK05439 pantothenate kinase; 22.5 1.9E+02 0.0042 23.0 4.7 36 47-82 24-59 (311)
136 PRK14756 hypothetical protein; 22.4 1.2E+02 0.0027 15.7 2.4 16 2-17 8-23 (29)
137 COG4930 Predicted ATP-dependen 22.2 4E+02 0.0086 23.1 6.6 30 68-97 415-444 (683)
138 TIGR03164 UHCUDC OHCU decarbox 22.0 1.3E+02 0.0028 21.5 3.3 11 92-102 94-104 (157)
139 COG3755 Uncharacterized protei 21.6 1.4E+02 0.003 21.0 3.2 35 68-105 49-84 (127)
140 PRK12511 RNA polymerase sigma 21.3 1.3E+02 0.0029 21.3 3.3 38 50-87 126-166 (182)
141 PF08281 Sigma70_r4_2: Sigma-7 21.1 55 0.0012 18.3 1.0 26 49-78 24-49 (54)
142 PF10041 DUF2277: Uncharacteri 20.9 2.4E+02 0.0053 18.1 5.9 50 59-108 7-63 (78)
143 PF07172 GRP: Glycine rich pro 20.8 1.9E+02 0.0042 19.0 3.7 28 4-31 1-28 (95)
144 TIGR00554 panK_bact pantothena 20.1 2.2E+02 0.0048 22.4 4.5 34 50-83 3-36 (290)
145 PHA03231 glycoprotein BALF4; P 20.1 3.2E+02 0.007 25.0 6.0 21 1-21 700-720 (829)
No 1
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=174.12 Aligned_cols=106 Identities=60% Similarity=0.943 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCchhhhhhhhCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHH
Q 033628 4 QVAPLIAGMAVAAAAYAGKYGIR----AWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRV 79 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ra~~~----a~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L 79 (115)
|++++++|++|+++++.+|++++ +|+-.+..+..+.++.||+|+|++.||+.||..||||+++++.+.||++||++
T Consensus 1 ~~~~i~~G~gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrri 80 (112)
T KOG0723|consen 1 MVSPIIAGLGVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRI 80 (112)
T ss_pred CchhHHHhHHHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHH
Confidence 57899999999999999999999 77777777767788899999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628 80 MVANHPDAGGSHYLASKINEAKDIMLRRTK 109 (115)
Q Consensus 80 ~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k 109 (115)
+..||||+|||||+.+||||||++|+...+
T Consensus 81 M~~NHPD~GGSPYlAsKINEAKdlLe~~~~ 110 (112)
T KOG0723|consen 81 MLANHPDRGGSPYLASKINEAKDLLEGTSL 110 (112)
T ss_pred HHcCCCcCCCCHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999986543
No 2
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.94 E-value=1.2e-27 Score=167.14 Aligned_cols=106 Identities=27% Similarity=0.345 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hhh-hhh----hhCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHH
Q 033628 4 QVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPT-ARM-RKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHR 77 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ra~~~a~~~~~~~~~~-~~~-~~~----~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr 77 (115)
|+++++++++|.|+.+++|+|.+||||+..+.+. ... ... ........||.+||++||||++..++++|.++|+
T Consensus 1 Ma~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 1 MAKRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK 80 (127)
T ss_dssp --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence 7899999999999999999999999998743321 111 111 0112345899999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628 78 RVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109 (115)
Q Consensus 78 ~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k 109 (115)
+|+..|+|++|||+|+++||.+|+|+|..+.+
T Consensus 81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997653
No 3
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.94 E-value=8e-26 Score=155.73 Aligned_cols=102 Identities=35% Similarity=0.646 Sum_probs=87.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----------hhhhhhh----hCCCCCCCCHHHHHHHhCCCCCCCh
Q 033628 4 QVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPT----------ARMRKFY----EGGFQPVMTRREAALILGVRESTPT 69 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ra~~~a~~~~~~~~~~----------~~~~~~~----~~~~~~~m~~~eA~~iLgl~~~~~~ 69 (115)
|+-|+++ +++.++.+++|+++++|++.+..+.. +..+.++ -.+++..|+.+|||+||||++++|.
T Consensus 1 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~ 79 (116)
T PTZ00100 1 MMWPIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASK 79 (116)
T ss_pred CcchHHH-HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCH
Confidence 5567777 99999999999999999876654432 1223433 4589999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 033628 70 EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 106 (115)
Q Consensus 70 ~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~ 106 (115)
+||+++||+|+++||||++||+|.+++|++|||+|.+
T Consensus 80 ~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 80 ERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999963
No 4
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=6e-22 Score=136.91 Aligned_cols=105 Identities=25% Similarity=0.308 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhhh-------hhCCCCCCCCHHHHHHHhCCCCCCChHHHHHHH
Q 033628 5 VAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTAR-MRKF-------YEGGFQPVMTRREAALILGVRESTPTEKVKEAH 76 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ra~~~a~~~~~~~~~~~~-~~~~-------~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~y 76 (115)
++|.++++||+|+.+++|+|.+||||..++..... .+.. -.......||.+||++||||++..+.++|.++|
T Consensus 1 ~~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 1 MARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 36899999999999999999999999865442211 1111 111223559999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628 77 RRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109 (115)
Q Consensus 77 r~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k 109 (115)
.+|+..|.|.+|||+|+++||.+|+|+|..+.+
T Consensus 81 ehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987765
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.5e-17 Score=130.22 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=55.0
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|...+.|+||||+.++|.+|||++||+|+++||||++. + .+.|++|++|||+|.|++||+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34567899999999999999999999999999999986 4 478999999999999999986
No 6
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=3.6e-16 Score=112.47 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=56.9
Q ss_pred CHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 033628 53 TRREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN 112 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~ 112 (115)
..+|++++|||++++ |.++||++||++++++|||+||+++.+++||+||++|.++.+|..
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 468999999999999 999999999999999999999999999999999999999988765
No 7
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.60 E-value=1.4e-15 Score=124.23 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 033628 48 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 48 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
....|...++|+||||++++|.+|||++||+|++++|||++++.+.|++|++||++|.++.||+
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 3455667899999999999999999999999999999999999999999999999999999874
No 8
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.58 E-value=5.5e-15 Score=89.37 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=49.0
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcccc
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-----SHYLASKINEAKDIMLRRT 108 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-----s~~~~~ki~~Ay~~L~~~~ 108 (115)
++|++|||+++++.++|+++|+++++.+|||+++ +.+.+.+|++||++|.++.
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999988 3578999999999999874
No 9
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.1e-15 Score=117.60 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=54.9
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHhcccccCC
Q 033628 51 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-H---YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 51 ~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-~---~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..+.++.|+||||+.+++..|||++||+|++++|||||.+ | +.|++|+.||++|+|+.+|.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3455788999999999999999999999999999999863 3 78999999999999999885
No 10
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.55 E-value=1.3e-14 Score=86.22 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=47.0
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcc
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLR 106 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~ 106 (115)
++|++|||+++++.++|+++|++|++.+|||++++ ...+.+|++||++|.+
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 36999999999999999999999999999999874 5789999999999974
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.53 E-value=2.3e-14 Score=87.95 Aligned_cols=56 Identities=30% Similarity=0.439 Sum_probs=51.0
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSH----YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg-gs~----~~~~ki~~Ay~~L~~~~kr~ 111 (115)
++|+||||+++++.++|+++|+++++.+|||+. ++. +.+..|++||++|.++.+|.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 579999999999999999999999999999995 455 78999999999999987764
No 12
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.1e-14 Score=117.01 Aligned_cols=60 Identities=28% Similarity=0.514 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|+..++|+||||++++|.+|||++||+|++++|||++. ..+.|++|++||++|.|+.||+
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence 44468899999999999999999999999999999975 3478999999999999999885
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=3.9e-14 Score=113.80 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+.|+||||++++|.+|||++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence 46799999999999999999999999999999975 3 378999999999999998874
No 14
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=4.8e-14 Score=113.37 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=53.8
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|+..++|+||||++++|.+||+++||+|++++|||++. + .+.|++|++||++|.++.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44468899999999999999999999999999999975 3 478999999999999998874
No 15
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.2e-14 Score=109.41 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=53.1
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKG 110 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr 110 (115)
|+..++|+||||++++|.+||+++||+|++++|||++.+ .+.+++|++||++|.++.+|
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHH
Confidence 445688999999999999999999999999999999864 47899999999999998776
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.5e-14 Score=112.99 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..+.|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|.|+.||+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 368899999999999999999999999999999975 3 378999999999999999884
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=8.1e-14 Score=112.03 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=53.2
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...++|++|||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence 34578999999999999999999999999999999854 368999999999999998874
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1e-13 Score=111.34 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=53.5
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|...+.|+||||++++|.+||+++||+|++++|||++.. .+.|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 344578999999999999999999999999999999752 368999999999999998875
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.4e-13 Score=110.98 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=53.5
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+..++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 34588999999999999999999999999999999754 478999999999999998874
No 20
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.8e-13 Score=109.82 Aligned_cols=57 Identities=23% Similarity=0.459 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++|+||||++++|.+||+++||+|++++|||+++ + .+.|++|++||++|.++.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence 47899999999999999999999999999999975 3 367999999999999998874
No 21
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.2e-13 Score=109.79 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=52.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 3588999999999999999999999999999999854 368899999999999998875
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.8e-13 Score=110.14 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=53.7
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|...++|+||||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence 334688999999999999999999999999999999753 478999999999999998874
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.9e-13 Score=109.62 Aligned_cols=60 Identities=25% Similarity=0.423 Sum_probs=53.3
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~---~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|+..++|+||||++++|.++|+++||+|++++|||+++ ++ +.|++|++||++|.++.+|.
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence 34468899999999999999999999999999999975 33 68899999999999988764
No 24
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.7e-13 Score=109.84 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=53.8
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|+..++|+||||++++|.+||+++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 455688999999999999999999999999999999863 378999999999999998774
No 25
>PHA02624 large T antigen; Provisional
Probab=99.41 E-value=3.7e-13 Score=113.94 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 033628 54 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS 113 (115)
Q Consensus 54 ~~eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~~ 113 (115)
.+++|++|||++++ +.++||++||++++++|||+||+++.+++|++||++|.++.++.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 56899999999999 9999999999999999999999999999999999999998887764
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.3e-13 Score=109.59 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..+.|++|||++++|.+||+++||+|++++|||++. ..+.|++|++||++|.++.+|.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 458899999999999999999999999999999974 4578999999999999998864
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.8e-13 Score=109.08 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=52.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..++|++|||++++|.++|+++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 358899999999999999999999999999999975 2 368999999999999998875
No 28
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.6e-13 Score=109.17 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=53.1
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+..++|+||||++++|.++|+++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 3468899999999999999999999999999999975 3 358999999999999998874
No 29
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.2e-13 Score=108.38 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=51.8
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..|+||||+++++.+|||++||+|+++|||||+.+. +.|++|.+|||+|.|+.||.
T Consensus 5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 358999999999999999999999999999999865 89999999999999988863
No 30
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.4e-13 Score=109.52 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=52.2
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~---~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+.|+||||++++|.++|+++||+|++++|||+++++ +.|++|++||++|.++.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence 4689999999999999999999999999999998764 57899999999999988874
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.40 E-value=2.9e-13 Score=106.25 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=53.6
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
|+..+.|++|||++++|.++|+++||+|++++|||++. ....|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence 44468899999999999999999999999999999975 4578999999999999988763
No 32
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.6e-13 Score=108.94 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++|+||||++++|.+||+++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence 58899999999999999999999999999999975 2 378999999999999998764
No 33
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.39 E-value=9.6e-13 Score=101.93 Aligned_cols=58 Identities=31% Similarity=0.426 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHhccc
Q 033628 50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG---G-SH-------YLASKINEAKDIMLRR 107 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg---g-s~-------~~~~ki~~Ay~~L~~~ 107 (115)
..++.++||++|||++++|.++||++||+|+++||||+. | ++ +.+++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999994 2 22 5789999999999863
No 34
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.8e-13 Score=108.39 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++|+||||+++++.++|+++||+|++++|||++++ .+.+++|++||++|.++.+|+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 478999999999999999999999999999999863 478999999999999988764
No 35
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.5e-13 Score=108.15 Aligned_cols=57 Identities=32% Similarity=0.413 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++|+||||++++|.++|+++||+|++++|||++. + .+.|++|++||++|.++.+|.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58899999999999999999999999999999975 3 368999999999999998774
No 36
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=9.3e-13 Score=106.22 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+.|+||||+++++.++|+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 467999999999999999999999999999999853 478999999999999998774
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1e-12 Score=105.60 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++|+||||++++|.+||+++||+|++++|||++.+ .+.+++|++||++|.++.+|+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence 478999999999999999999999999999999753 468999999999999988764
No 38
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-12 Score=98.62 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=53.2
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDA----GGSHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk----ggs~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..-+.++||||+++++..|||++||+|..++|||| +++.+.+..|+.||+.|.|...|-
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sre 159 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRE 159 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHH
Confidence 33466999999999999999999999999999999 678899999999999999887653
No 39
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.33 E-value=1.7e-12 Score=103.50 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=50.6
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 57 AALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 57 A~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.|+||||+++++.++|+++||+|++++|||++.+ .+.|++|++||++|.++.+|.
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 6899999999999999999999999999999853 478999999999999988764
No 40
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.7e-12 Score=104.97 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=51.0
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+.|+||||++++|.++||++||+|++++|||++.+ .+.|++|++||++|.++.+|.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 57999999999999999999999999999999863 468999999999999988763
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=2.3e-12 Score=103.47 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=51.6
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+.|+||||++++|.++|+++||+|++++|||++++ .+.+++|++||++|.++.+|+
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 57999999999999999999999999999999864 478899999999999998874
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.9e-12 Score=105.03 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=54.5
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
......|++|||+.+++.++|+.+||+|++++|||++++ .+.|+.|+.||++|.+++.|+
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 355788999999999999999999999999999999875 378999999999999998874
No 43
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=1.9e-12 Score=104.49 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=53.0
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...++|++|||++++|.+||+++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3468899999999999999999999999999999975 3 368999999999999998775
No 44
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.4e-12 Score=103.27 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=51.6
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+.|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 467999999999999999999999999999999753 278899999999999988774
No 45
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.3e-12 Score=97.64 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=53.9
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...+-|.+|||.++++.++||++||+|++++|||++|+ +..|..||.||++|.|..+|.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence 36788999999999999999999999999999999875 378999999999999998873
No 46
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-12 Score=100.15 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628 50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+++.+++|+||||+++++..|||.+|++|++++|||.+- ....|++|.+|||+|.++.||.
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 4455558999999999999999999999999999999864 4578999999999999998874
No 47
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=5.7e-12 Score=101.37 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=51.8
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+.|+||||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 367999999999999999999999999999999753 478999999999999998874
No 48
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.9e-11 Score=99.48 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=53.9
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-------~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...|.|.+|||++++|.+||+++||++...+||||.-|+ +.|++|.+|||+|.|+++|.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 345899999999999999999999999999999998755 67999999999999999874
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.7e-11 Score=85.37 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=52.9
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH----YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~----~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...+.|+||||.++++.++|+++||++++++|||+++ ++ +.+..|++||++|.++.+|.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 3467899999999999999999999999999999975 33 78999999999999988764
No 50
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.4e-11 Score=93.06 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~---~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..|.|.|||++++++..+|+++|+..++++|||||. +| +.|+++.+||++|.++..|.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 468899999999999999999999999999999985 54 78999999999999988764
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.11 E-value=1e-10 Score=85.11 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkggs~-------~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+.|++|||++. +|.++|+++|++|.+++|||+..+. +.+..||+||++|.++.+|+
T Consensus 3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46899999997 7899999999999999999997543 23579999999999998875
No 52
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.11 E-value=8.5e-11 Score=103.47 Aligned_cols=59 Identities=22% Similarity=0.128 Sum_probs=53.5
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...+.|+||||++++|..+||++||+|++++|||++.+ ...|++|++||++|.++.+|.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 34688999999999999999999999999999999863 367999999999999999885
No 53
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.11 E-value=8.2e-11 Score=101.56 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=51.6
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~---~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++|+||||+++++.++|+++||+|++++|||++++. ..+++|++||++|.++.+|+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 3679999999999999999999999999999998753 46899999999999988875
No 54
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.11 E-value=1.4e-10 Score=84.76 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=48.3
Q ss_pred HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s~-------~~~~ki~~Ay~~L~~~~kr~ 111 (115)
..|++|||++. +|..+|+++|++|.+.+|||+.. ++ ..++.||+||++|.++.+|+
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 46899999996 78899999999999999999943 22 35678999999999999876
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=2.7e-10 Score=83.46 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s-------~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
....+++|||++. ++.++|+++|++|.+++|||+.. + ...++.||+||++|.++.+|+
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 3457999999998 78899999999999999999953 2 135788999999999999886
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.04 E-value=3.3e-10 Score=83.16 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s~-------~~~~ki~~Ay~~L~~~~kr~ 111 (115)
...+++|||++. ++..+|+++|++|.+++|||+.. +. ..++.||+||++|.++.+|+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 578999999996 68999999999999999999954 22 23578999999999999875
No 57
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.6e-10 Score=86.23 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG------SHYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg------s~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+.|+||||..+++..+|+++|++|.+++|||++. ....|+.++.||.+|.++.+|+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7899999999999999999999999999999983 3478999999999999988774
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.1e-09 Score=93.26 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHhCCCCC----CChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhc
Q 033628 50 PVMTRREAALILGVRES----TPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIML 105 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~----~~~~~Ik~~yr~L~~~~HPDkgg-s~~~~~ki~~Ay~~L~ 105 (115)
..|+.++||+||+++-+ .++++||++|++|+.+||||||+ .-+.|.++|+|||+|.
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 46899999999999965 45699999999999999999997 4589999999999998
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.4e-09 Score=82.99 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.++.|++|||+.+.++.+|.++||+|+.+||||++.+ ..+|.+|..||++|.++..|.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHH
Confidence 4788999999999999999999999999999999754 368999999999999876554
No 60
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.3e-09 Score=87.16 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+||.+|||.+++|.++||+.||+++...|||||-. .+.|+++..|||+|.+..+|.
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 478999999999999999999999999999999865 488999999999999888764
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.74 E-value=1.3e-08 Score=74.59 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=48.7
Q ss_pred HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033628 56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s~-------~~~~ki~~Ay~~L~~~~kr~ 111 (115)
+.+++|||++. ++...++++|+.|.+.+|||+-. ++ +..+.||+||.+|+++.+|+
T Consensus 3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 46899999997 89999999999999999999842 22 45688999999999999876
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.8e-08 Score=82.49 Aligned_cols=60 Identities=27% Similarity=0.426 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CC----HHHHHHHHHHHHHhcccccCCCC
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GS----HYLASKINEAKDIMLRRTKGSNS 113 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg-gs----~~~~~ki~~Ay~~L~~~~kr~~~ 113 (115)
+.++|.|||+..+++.++|+++||++.+.||||++ |+ .-.|+++-+||.+|.++.+|.+.
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 56889999999999999999999999999999997 45 35789999999999999988764
No 63
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=3.4e-08 Score=79.89 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=53.0
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGSN 112 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-------~~~~ki~~Ay~~L~~~~kr~~ 112 (115)
..++.|+||||..++++.||.++||+|+.+.|||.--+. ..|.-|..|+|+|.++.+|.+
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 457899999999999999999999999999999986554 357779999999999998753
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.61 E-value=6.2e-08 Score=69.88 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 033628 67 TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 67 ~~~~~Ik~~yr~L~~~~HPDkgg--s-------~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
++..+|+++|++|.+.+|||+.. + ...++.||+||++|.++.+|+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 57899999999999999999832 2 256789999999999999886
No 65
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.5e-07 Score=77.90 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=48.6
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 033628 57 AALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 57 A~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---------~~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.|+|||++.+++..+||++||+|..++||||-.. .+....|+.||+.|.+...|.
T Consensus 100 PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re 163 (610)
T COG5407 100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE 163 (610)
T ss_pred hHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3999999999999999999999999999999543 256788999999999887664
No 66
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7.1e-08 Score=72.44 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=49.7
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-----~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+++.|||+..+++.++|+++|+++++.+|||++.+. ..+.+|.+||++|.++.+|.
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~ 64 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK 64 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence 4789999999999888999999999999999997554 34678889999999888765
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.8e-07 Score=70.91 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhc
Q 033628 54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIML 105 (115)
Q Consensus 54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~ 105 (115)
..|.+.|||++++++.++++++|.+|++++|||.|. |...|.+|.+||..+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvl 100 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVL 100 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999985 6789999999999443
No 68
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.2e-07 Score=69.06 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-HH----HHHHHHHHHHhcccc
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YL----ASKINEAKDIMLRRT 108 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-~~----~~ki~~Ay~~L~~~~ 108 (115)
.+|++|.+++..+.++|+++||+|....|||+|.+. +. |--|..||..|.++.
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence 579999999999999999999999999999999764 33 445788999888766
No 69
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=7.4e-05 Score=58.83 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=49.8
Q ss_pred HHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCC---CC---CHHHHHHHHHHHHHhcccccCCC
Q 033628 55 REAALILGVRES---TPTEKVKEAHRRVMVANHPDA---GG---SHYLASKINEAKDIMLRRTKGSN 112 (115)
Q Consensus 55 ~eA~~iLgl~~~---~~~~~Ik~~yr~L~~~~HPDk---gg---s~~~~~ki~~Ay~~L~~~~kr~~ 112 (115)
.+-|.+|||+.- ++.++|.+++++.+.+||||+ || ..+.|.-|..||++|.++.+|.+
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~q 109 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQ 109 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhh
Confidence 567999999974 788999999999999999998 34 45788999999999999887753
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00011 Score=53.56 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=42.2
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 033628 55 REAALILGVRESTPTEKVKEAHRRVMVANHPDA---GGSH--------YLASKINEAKDIM 104 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk---ggs~--------~~~~ki~~Ay~~L 104 (115)
.++|.+||++...+..+|+++|+.++..+|||+ -|++ ..+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999998 3433 4456677777754
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.17 E-value=0.0027 Score=38.64 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q 033628 51 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIML 105 (115)
Q Consensus 51 ~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~ 105 (115)
.|+.++||++||++++.+.+.|-..|+.... . +|.......+|-..|-
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~------~P~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-D------DPSQKDTLREALRVIA 48 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-c------ChHhHHHHHHHHHHHH
Confidence 3899999999999999999999999999888 2 3344455566655554
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0018 Score=47.03 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=49.0
Q ss_pred CHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcccccCCC
Q 033628 53 TRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG-------S--HYLASKINEAKDIMLRRTKGSN 112 (115)
Q Consensus 53 ~~~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg-------s--~~~~~ki~~Ay~~L~~~~kr~~ 112 (115)
+....+.++|.+.. ++++.+...|-...+..|||+.+ + .+...++|+||+.|.++..|++
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~ 76 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARAR 76 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677899988875 78888888999999999999843 2 2557889999999999988763
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.20 E-value=0.0056 Score=51.01 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=29.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCC-C---CH---HHHHHHHHHHHH
Q 033628 66 STPTEKVKEAHRRVMVANHPDAG-G---SH---YLASKINEAKDI 103 (115)
Q Consensus 66 ~~~~~~Ik~~yr~L~~~~HPDkg-g---s~---~~~~ki~~Ay~~ 103 (115)
-++.+.||++|||..+..||||- + +. |++.+|+.++..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~e 443 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSE 443 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHH
Confidence 37899999999999999999992 2 22 666776665543
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.74 E-value=0.014 Score=43.52 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccc
Q 033628 64 RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR 107 (115)
Q Consensus 64 ~~~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~ 107 (115)
+++++.|||++++.++..+| +|++....+|..|||.|.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999 89999999999999988743
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.052 Score=39.48 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcccccCC
Q 033628 67 TPTEKVKEAHRRVMVANHPDAGGSH---------YLASKINEAKDIMLRRTKGS 111 (115)
Q Consensus 67 ~~~~~Ik~~yr~L~~~~HPDkggs~---------~~~~ki~~Ay~~L~~~~kr~ 111 (115)
.+.+.++..|+.+...+|||+.++. ..+..+|.||..|+++.+|+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra 68 (174)
T COG1076 15 IDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA 68 (174)
T ss_pred HHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3567889999999999999996532 34567999999999887654
No 76
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=84.48 E-value=3 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 033628 4 QVAPLIAGMAVAAAAYA-GKYGIRAWQAFKARP 35 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~ra~~~a~~~~~~~~ 35 (115)
|+-|++.|+++..-.++ .-.|+.||.|+++..
T Consensus 1 MvEplL~GiVlGli~vtl~Glfv~Ay~QY~Rg~ 33 (37)
T PF02529_consen 1 MVEPLLSGIVLGLIPVTLAGLFVAAYLQYRRGN 33 (37)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred CCchhhhhHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 56788888888766664 667889999987654
No 77
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=83.45 E-value=3.1 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 033628 4 QVAPLIAGMAVAAAAYA-GKYGIRAWQAFKARP 35 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~ra~~~a~~~~~~~~ 35 (115)
|+-|++.|+++..--+. .-.|+.||.|+++..
T Consensus 1 MvEplL~GiVLGlipiTl~GlfvaAylQYrRg~ 33 (37)
T PRK00665 1 MIEPLLCGIVLGLIPVTLAGLFVAAWNQYKRGN 33 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 55677888777655544 667889999987644
No 78
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=83.30 E-value=3.2 Score=22.99 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 033628 4 QVAPLIAGMAVAAAAYA-GKYGIRAWQAFKARP 35 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~ra~~~a~~~~~~~~ 35 (115)
|+-|++.|+++..--+. .-.|+.||.|+++..
T Consensus 1 MvE~lL~GiVLGlipvTl~GlfvaAylQYrRg~ 33 (37)
T CHL00008 1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRGD 33 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 56678888777655544 667889999987654
No 79
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=77.35 E-value=3.5 Score=28.13 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC
Q 033628 67 TPTEKVKEAHRRVMVANHPDAGGS 90 (115)
Q Consensus 67 ~~~~~Ik~~yr~L~~~~HPDkggs 90 (115)
.+..+++.+-|......|||--++
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~ 29 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQ 29 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCccccc
Confidence 567799999999999999997543
No 80
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=63.71 E-value=8.8 Score=30.67 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHh-----CCCC-CCChHHHHHHHHHHHHHhCCCCCC--------CH---------------------HHH
Q 033628 50 PVMTRREAALIL-----GVRE-STPTEKVKEAHRRVMVANHPDAGG--------SH---------------------YLA 94 (115)
Q Consensus 50 ~~m~~~eA~~iL-----gl~~-~~~~~~Ik~~yr~L~~~~HPDkgg--------s~---------------------~~~ 94 (115)
..-+.++|.++| |-.+ +.+.+++-++.+..--..|||.|. |. -.|
T Consensus 25 S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~if 104 (308)
T PF03820_consen 25 SEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIF 104 (308)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHH
Confidence 334578888888 3332 258999999999999999999742 10 223
Q ss_pred -HHHHHHHHHhcccccCCCC
Q 033628 95 -SKINEAKDIMLRRTKGSNS 113 (115)
Q Consensus 95 -~ki~~Ay~~L~~~~kr~~~ 113 (115)
+=+|+.|..+-++..|..+
T Consensus 105 wQw~NQS~Na~vNy~Nrnas 124 (308)
T PF03820_consen 105 WQWVNQSYNAAVNYTNRNAS 124 (308)
T ss_pred HHHHHhHHHHHHhhhccCCC
Confidence 4478899888888776654
No 81
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=63.53 E-value=38 Score=21.90 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHh
Q 033628 58 ALILGVRESTPTEKVKEAHRRVMVAN 83 (115)
Q Consensus 58 ~~iLgl~~~~~~~~Ik~~yr~L~~~~ 83 (115)
-+++|+++.++.+||+.+-+..+.+.
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKl 31 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKL 31 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999987777765
No 82
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=61.01 E-value=9.8 Score=30.70 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=44.7
Q ss_pred CCCHHHHHHHhC------CCCCCChHHHHHHHHHHHHHhCCCCCC--------C---------------HH------HH-
Q 033628 51 VMTRREAALILG------VRESTPTEKVKEAHRRVMVANHPDAGG--------S---------------HY------LA- 94 (115)
Q Consensus 51 ~m~~~eA~~iLg------l~~~~~~~~Ik~~yr~L~~~~HPDkgg--------s---------------~~------~~- 94 (115)
.-+.+|+++|+. +.++.+.+++-++.+..--.+|||.|. | +| .|
T Consensus 44 ~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgEk~~~~gRMSaqvP~nm~itggmLt~y~~~p~vvFw 123 (328)
T KOG3767|consen 44 EKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGEKMFLLGRMSAQVPFNMVITGGMLTPYRTTPGVVFW 123 (328)
T ss_pred HHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCCCcccccccccccCcCcchhhhhhcccCCCCCeeeeH
Confidence 335688988885 334468999999999999999999852 1 11 12
Q ss_pred HHHHHHHHHhcccccCCCC
Q 033628 95 SKINEAKDIMLRRTKGSNS 113 (115)
Q Consensus 95 ~ki~~Ay~~L~~~~kr~~~ 113 (115)
+=+|+.+..+-++..|.+.
T Consensus 124 QW~NQSfNA~VNytNrsg~ 142 (328)
T KOG3767|consen 124 QWFNQSFNAAVNYTNRSGN 142 (328)
T ss_pred HHhhhHHHHHHhhcccCCC
Confidence 3478888888777776553
No 83
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=51.06 E-value=33 Score=23.02 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHhCCCC---------CCCHHHH
Q 033628 58 ALILGVRESTPTEKVKEAHRRVMVANHPDA---------GGSHYLA 94 (115)
Q Consensus 58 ~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk---------ggs~~~~ 94 (115)
...+++.++.+.+++++++++.+...+++. ||||+..
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~ 75 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNA 75 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 556778888899999999999999987654 7888643
No 84
>PF12728 HTH_17: Helix-turn-helix domain
Probab=50.10 E-value=13 Score=20.81 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=12.8
Q ss_pred CCHHHHHHHhCCCCC
Q 033628 52 MTRREAALILGVRES 66 (115)
Q Consensus 52 m~~~eA~~iLgl~~~ 66 (115)
+|.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999654
No 85
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=49.59 E-value=25 Score=27.61 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHhccccc
Q 033628 67 TPTEKVKEAHRRVMVANHPDAGG--------SHYLASKINEAKDIMLRRTK 109 (115)
Q Consensus 67 ~~~~~Ik~~yr~L~~~~HPDkgg--------s~~~~~ki~~Ay~~L~~~~k 109 (115)
++..++...|+.....+|||+-. ....+.+|.+||+++.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~ 54 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEP 54 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 45678899999999999999752 34667899999999997543
No 86
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=45.61 E-value=49 Score=19.88 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=21.2
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPD 86 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPD 86 (115)
+.+-|.+.||-.+..|++++-+..-+ ..+.||+
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~-W~~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWN-WQKKNPN 60 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHH-HHHHSTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHH-HHHHCcC
Confidence 56889999999999999887776666 5566774
No 87
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=45.33 E-value=14 Score=18.07 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=10.5
Q ss_pred ccchHHHHHHHHHH
Q 033628 2 SNQVAPLIAGMAVA 15 (115)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (115)
++-.+|+++|+++.
T Consensus 2 ~~iIaPi~VGvvl~ 15 (21)
T PF13955_consen 2 TTIIAPIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHH
Confidence 45578899888775
No 88
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=45.28 E-value=15 Score=19.78 Aligned_cols=15 Identities=47% Similarity=0.536 Sum_probs=12.7
Q ss_pred CCHHHHHHHhCCCCC
Q 033628 52 MTRREAALILGVRES 66 (115)
Q Consensus 52 m~~~eA~~iLgl~~~ 66 (115)
||.+|+.+.||++..
T Consensus 2 lt~~e~a~~lgis~~ 16 (49)
T TIGR01764 2 LTVEEAAEYLGVSKD 16 (49)
T ss_pred CCHHHHHHHHCCCHH
Confidence 688999999999654
No 89
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=44.28 E-value=24 Score=25.12 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCC
Q 033628 50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPD 86 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPD 86 (115)
..++.+|--++||++.+.-...+.++-++|-+-+.||
T Consensus 145 ~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 145 LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 4456666667777766655555555555555555554
No 90
>PF12669 P12: Virus attachment protein p12 family
Probab=42.68 E-value=36 Score=20.41 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=9.3
Q ss_pred HHHHHHHHH-HHH-HHHHHHHHH
Q 033628 9 IAGMAVAAA-AYA-GKYGIRAWQ 29 (115)
Q Consensus 9 ~~~~~~~~~-~~~-~ra~~~a~~ 29 (115)
+++++|+++ .++ .|.+++..+
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444333 333 366655433
No 91
>smart00427 H2B Histone H2B.
Probab=38.91 E-value=74 Score=20.95 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=11.7
Q ss_pred HHHHHHhCCCCCCCH
Q 033628 77 RRVMVANHPDAGGSH 91 (115)
Q Consensus 77 r~L~~~~HPDkggs~ 91 (115)
.+..++.|||.|-|.
T Consensus 8 ~kvLKqVhpd~giS~ 22 (89)
T smart00427 8 YKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHhCCCccccH
Confidence 567899999997553
No 92
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=38.22 E-value=1.4e+02 Score=20.93 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhhhhhCCCCCCCCHHHHHHHhCCCCC---------CChHHHHHHHHHHHHHhCC
Q 033628 15 AAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES---------TPTEKVKEAHRRVMVANHP 85 (115)
Q Consensus 15 ~~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~---------~~~~~Ik~~yr~L~~~~HP 85 (115)
..=+=+.|+|.+...-....+.... ..++..-.+..+|+.+.||.+. .|.+.+.+.-..-++..--
T Consensus 35 ~lE~KLvK~fSkQL~~K~k~~~~~~-----~~~l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~ 109 (129)
T PF13543_consen 35 TLEGKLVKYFSKQLQCKAKVAERER-----AAELNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILN 109 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccC-----chhcccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHH
Confidence 3334456777665433222221101 1233444688999999999876 2333332222211111111
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 033628 86 DAGGSHYLASKINEAKDIM 104 (115)
Q Consensus 86 Dkggs~~~~~ki~~Ay~~L 104 (115)
+.|.+.+-..++..|-..|
T Consensus 110 ~~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 110 RCGAREEECRRLCRALSNL 128 (129)
T ss_pred HhCCCHHHHHHHHHHHHhc
Confidence 1366778888888887766
No 93
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=37.53 E-value=23 Score=18.07 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 033628 69 TEKVKEAHRRVMVANHPD 86 (115)
Q Consensus 69 ~~~Ik~~yr~L~~~~HPD 86 (115)
.++..+.+++++-..|||
T Consensus 25 ~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 25 LEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHH----------
T ss_pred HHHHHHHHHHHhcccccC
Confidence 357778888888888887
No 94
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=34.61 E-value=40 Score=19.91 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 033628 49 QPVMTRREAALILGVRESTPTEKVKEAHRRVM 80 (115)
Q Consensus 49 ~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~ 80 (115)
....+..|--+.||+++.+=.+.|+++-++++
T Consensus 21 PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 21 PRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34568899999999999988888999888876
No 95
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=34.60 E-value=39 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=14.3
Q ss_pred HHHHHHhC---CCCCCChHHHHHHHHHH
Q 033628 55 REAALILG---VRESTPTEKVKEAHRRV 79 (115)
Q Consensus 55 ~eA~~iLg---l~~~~~~~~Ik~~yr~L 79 (115)
++|++|-. =..+..+..|+++||+|
T Consensus 63 E~A~~Vq~~~~~~~pl~P~hlreA~rrL 90 (90)
T PF04719_consen 63 EEARDVQEEWGETGPLQPDHLREAYRRL 90 (90)
T ss_dssp HHHHHHHHHTT--SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHhC
Confidence 45554433 22247888999999986
No 96
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=34.31 E-value=28 Score=27.37 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhcc
Q 033628 92 YLASKINEAKDIMLR 106 (115)
Q Consensus 92 ~~~~ki~~Ay~~L~~ 106 (115)
-+.+|||+|+|+|+.
T Consensus 128 RRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHh
Confidence 357889999999985
No 97
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=34.05 E-value=1.5e+02 Score=20.00 Aligned_cols=55 Identities=11% Similarity=0.000 Sum_probs=39.0
Q ss_pred CCHHHHHHHhCCCCC-----CChHHHHHHHHHHHHHhCCCCCCCHH-HH----HHHHHHHHHhcc
Q 033628 52 MTRREAALILGVRES-----TPTEKVKEAHRRVMVANHPDAGGSHY-LA----SKINEAKDIMLR 106 (115)
Q Consensus 52 m~~~eA~~iLgl~~~-----~~~~~Ik~~yr~L~~~~HPDkggs~~-~~----~ki~~Ay~~L~~ 106 (115)
-+.+|.++.|||+=+ .+.=.|-++|...+...++.-+.++. .. .-+.+||+....
T Consensus 12 ~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~ 76 (105)
T PF03206_consen 12 SSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVT 76 (105)
T ss_pred cCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 367889999999865 56778889999999888775444432 21 336788876653
No 98
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=33.48 E-value=83 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCC
Q 033628 48 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPD 86 (115)
Q Consensus 48 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPD 86 (115)
...+++..+|-+.||+++.+-.. --..||+-+.+..|.
T Consensus 10 Ls~~~s~~~Aa~~lG~~~~~v~~-wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 10 LSQQISVAQAADRLGTDPGTVRR-WVRMFRQWLLQLDPS 47 (65)
T ss_pred hcccccHHHHHHHHCcCHHHHHH-HHHHHHHHHHHcCCC
Confidence 35578999999999998874443 346789999999874
No 99
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=33.27 E-value=1.1e+02 Score=19.29 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033628 7 PLIAGMAVAAAAYAGKYGIRAWQAFKA 33 (115)
Q Consensus 7 ~~~~~~~~~~~~~~~ra~~~a~~~~~~ 33 (115)
++-+.+.++++.++.+.|-+.|+....
T Consensus 3 ~~~~~~~~~ag~~a~k~~~~~W~~~tg 29 (78)
T PF14019_consen 3 PVGLAAGLAAGFLAGKVFEQVWKKVTG 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888888999999999997643
No 100
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=33.25 E-value=23 Score=21.26 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCCChHHH-HHHHHHHHHHhCCCC
Q 033628 55 REAALILGVRESTPTEKV-KEAHRRVMVANHPDA 87 (115)
Q Consensus 55 ~eA~~iLgl~~~~~~~~I-k~~yr~L~~~~HPDk 87 (115)
++.+++||+++ +++ ......+....|||-
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 46788999854 455 555666778889864
No 101
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=33.24 E-value=44 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHHhCC---CCCCChHHHHHHHHHHHHHh
Q 033628 54 RREAALILGV---RESTPTEKVKEAHRRVMVAN 83 (115)
Q Consensus 54 ~~eA~~iLgl---~~~~~~~~Ik~~yr~L~~~~ 83 (115)
.+||+.|.+. +..+-+..|+++||+|-.+-
T Consensus 150 VEeAl~V~~~~~e~~PLqP~HIREA~rrL~~qg 182 (195)
T KOG3219|consen 150 VEEALDVREEWGESGPLQPKHIREAYRRLKLQG 182 (195)
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHhcC
Confidence 3677665544 44578899999999997753
No 102
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=32.97 E-value=91 Score=23.19 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhCC-----CCCCChHHHHHHHHH--HHHHhCCCC
Q 033628 49 QPVMTRREAALILGV-----RESTPTEKVKEAHRR--VMVANHPDA 87 (115)
Q Consensus 49 ~~~m~~~eA~~iLgl-----~~~~~~~~Ik~~yr~--L~~~~HPDk 87 (115)
...|+.-|++++|+= +|+.+...|.-+|.. .+.+.|||+
T Consensus 70 ~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 70 KMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred hhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 468999999999862 244677788877764 578899998
No 103
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=32.36 E-value=41 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.7
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC
Q 033628 53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDA 87 (115)
Q Consensus 53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk 87 (115)
..+|.++||+++ ....+.|-.+++++.+..-|-.
T Consensus 18 gaDEil~IL~lp-~s~l~~iP~~~kk~w~dl~~~~ 51 (97)
T PF04512_consen 18 GADEILSILRLP-CSALQSIPRSHKKLWKDLEPCV 51 (97)
T ss_pred cHHHHHHHhCCC-HHHHHHcCHHHHHHHHHhcccC
Confidence 579999999999 5567788888888888887743
No 104
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=32.25 E-value=52 Score=22.71 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=13.4
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVA 82 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~ 82 (115)
++.+|-.++||++++.-...+.++-++|-..
T Consensus 129 ~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~ 159 (164)
T PRK12547 129 FSYEDAAAICGCAVGTIKSRVSRARNRLQEL 159 (164)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4444444455544443333344443333333
No 105
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=32.10 E-value=32 Score=18.20 Aligned_cols=15 Identities=53% Similarity=0.705 Sum_probs=12.2
Q ss_pred CCHHHHHHHhCCCCC
Q 033628 52 MTRREAALILGVRES 66 (115)
Q Consensus 52 m~~~eA~~iLgl~~~ 66 (115)
|+..|+.+.||+++.
T Consensus 1 ~s~~e~a~~lgvs~~ 15 (49)
T cd04762 1 LTTKEAAELLGVSPS 15 (49)
T ss_pred CCHHHHHHHHCcCHH
Confidence 578899999999654
No 106
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=31.83 E-value=87 Score=24.90 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhC
Q 033628 49 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANH 84 (115)
Q Consensus 49 ~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~H 84 (115)
....|.+|.-.+.||+...+..||...|.-|....|
T Consensus 22 ~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~ 57 (283)
T COG1072 22 PLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQ 57 (283)
T ss_pred ccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999999999887664
No 107
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=30.03 E-value=92 Score=19.73 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=18.6
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCC
Q 033628 64 RESTPTEKVKEAHRRVMVANHPDA 87 (115)
Q Consensus 64 ~~~~~~~~Ik~~yr~L~~~~HPDk 87 (115)
+.++++++|-.-|++.+...-|+.
T Consensus 32 ~~~I~PEeIv~iH~~~v~~l~~~~ 55 (77)
T PF08673_consen 32 EKDISPEEIVEIHKSAVQELSPSL 55 (77)
T ss_dssp HTT--HHHHHHHHHHHHHHH-TTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcccc
Confidence 456899999999999999998885
No 108
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=29.75 E-value=58 Score=23.56 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q 033628 92 YLASKINEAKD 102 (115)
Q Consensus 92 ~~~~ki~~Ay~ 102 (115)
..+.++|.+|+
T Consensus 99 ~~l~~lN~~Y~ 109 (166)
T PRK13798 99 AALAAGNRAYE 109 (166)
T ss_pred HHHHHHHHHHH
Confidence 45677888886
No 109
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=29.49 E-value=80 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCHHHHHHHhCCCCCCChHHHHH
Q 033628 52 MTRREAALILGVRESTPTEKVKE 74 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~ 74 (115)
+|.+|-+++||++.+.+.++-.+
T Consensus 46 ks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 46 KSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp S-HHHHHHHHT---TSSHHHHHH
T ss_pred CCHHHHHHHcCCCCCCCHHHHHH
Confidence 58899999999999987766543
No 110
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=29.03 E-value=43 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhc
Q 033628 74 EAHRRVMVANHPDAGG---SHYLASKINEAKDIML 105 (115)
Q Consensus 74 ~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~ 105 (115)
+--.|.+..+|||+|. +...|+.+..-++.|.
T Consensus 248 QELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lR 282 (661)
T KOG2070|consen 248 QELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELR 282 (661)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345668889999985 3445555555555444
No 111
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.77 E-value=1.3e+02 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033628 8 LIAGMAVAAAAYAGKYGIRAWQA 30 (115)
Q Consensus 8 ~~~~~~~~~~~~~~ra~~~a~~~ 30 (115)
++++++.+++.+++-...+.++-
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666653
No 112
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.47 E-value=38 Score=18.32 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=18.8
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC
Q 033628 52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA 87 (115)
Q Consensus 52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk 87 (115)
|+..|+.++||+++. .|+ .|.+.-... |.+
T Consensus 1 ~~~~e~a~~~gv~~~----tlr-~~~~~g~l~-~~~ 30 (49)
T cd04761 1 YTIGELAKLTGVSPS----TLR-YYERIGLLS-PAR 30 (49)
T ss_pred CcHHHHHHHHCcCHH----HHH-HHHHCCCCC-CCc
Confidence 578899999999654 444 444444333 554
No 113
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=28.18 E-value=67 Score=22.54 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=16.8
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 033628 51 VMTRREAALILGVRESTPTEKVKEAHRRVMV 81 (115)
Q Consensus 51 ~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~ 81 (115)
.++.+|.-++||++.+.-...+.++.+++..
T Consensus 143 g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~ 173 (178)
T PRK12529 143 GMKQKDIAQALDIALPTVKKYIHQAYVTCLS 173 (178)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4555666666666555545555555555443
No 114
>PLN00158 histone H2B; Provisional
Probab=27.01 E-value=1.4e+02 Score=20.58 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=12.1
Q ss_pred HHHHHHHhCCCCCCCH
Q 033628 76 HRRVMVANHPDAGGSH 91 (115)
Q Consensus 76 yr~L~~~~HPDkggs~ 91 (115)
..+..++.|||.|-|.
T Consensus 33 I~kVLKQVhPd~gIS~ 48 (116)
T PLN00158 33 IYKVLKQVHPDTGISS 48 (116)
T ss_pred HHHHHHHhCCCCCccH
Confidence 4566889999998654
No 115
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.56 E-value=1.7e+02 Score=18.45 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=13.4
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 033628 63 VRESTPTEKVKEAHRRVMV 81 (115)
Q Consensus 63 l~~~~~~~~Ik~~yr~L~~ 81 (115)
.....|...|++-|+...+
T Consensus 51 mGqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 51 MGQKPSEKKINQVMRSIIK 69 (71)
T ss_pred hCCCchHHHHHHHHHHHHh
Confidence 4445678888888887654
No 116
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=26.53 E-value=62 Score=13.74 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=6.4
Q ss_pred HHHHHHHHHHh
Q 033628 94 ASKINEAKDIM 104 (115)
Q Consensus 94 ~~ki~~Ay~~L 104 (115)
+.++..||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 34566666655
No 117
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=26.52 E-value=65 Score=17.52 Aligned_cols=30 Identities=37% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 033628 50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 83 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~ 83 (115)
..++..|..+.||++.+ .|+...+++....
T Consensus 14 ~~~s~~eia~~l~~s~~----tv~~~~~~~~~~l 43 (57)
T cd06170 14 EGKTNKEIADILGISEK----TVKTHLRNIMRKL 43 (57)
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHHh
Confidence 34788999999998544 5555555555544
No 118
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=26.50 E-value=80 Score=20.38 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=11.8
Q ss_pred CCCCChHHHHHHHHHH
Q 033628 64 RESTPTEKVKEAHRRV 79 (115)
Q Consensus 64 ~~~~~~~~Ik~~yr~L 79 (115)
.....+..|+++||+|
T Consensus 69 ~~Pl~P~HireA~rrl 84 (85)
T cd08048 69 TGPLQPRHLREAYRRL 84 (85)
T ss_pred CCCCCcHHHHHHHHHh
Confidence 3446778888888876
No 119
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=26.47 E-value=2.2e+02 Score=19.52 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=23.2
Q ss_pred CCHHHHHHHhCCCCC-----CChHHHHHHHHHHHHHhC
Q 033628 52 MTRREAALILGVRES-----TPTEKVKEAHRRVMVANH 84 (115)
Q Consensus 52 m~~~eA~~iLgl~~~-----~~~~~Ik~~yr~L~~~~H 84 (115)
-+.+|.++.|||+=+ ...=.|-++|...+..-.
T Consensus 16 ssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~ 53 (113)
T PRK00810 16 SSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQED 53 (113)
T ss_pred ccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcc
Confidence 367888888888865 456677777777766554
No 120
>PRK11677 hypothetical protein; Provisional
Probab=25.97 E-value=1e+02 Score=21.74 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=14.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHH
Q 033628 1 MSNQVAPLIAGMAVAAAAYAGKYGIRAW 28 (115)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ra~~~a~ 28 (115)
|..+.+-+.+-++++.|.+++|.+....
T Consensus 1 M~W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 3333444444455555666666655443
No 121
>PF05373 Pro_3_hydrox_C: L-proline 3-hydroxylase, C-terminal; InterPro: IPR008035 Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyse oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure contains conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. The structure differs significantly from many other 2-OG oxygenases in possessing a discrete C-terminal helical domain.; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 1E5S_A 1E5R_B.
Probab=25.54 E-value=66 Score=21.71 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh-----CCCC-----------CCCHHHHHHHHHHHHHhc
Q 033628 48 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVAN-----HPDA-----------GGSHYLASKINEAKDIML 105 (115)
Q Consensus 48 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~-----HPDk-----------ggs~~~~~ki~~Ay~~L~ 105 (115)
-+++++.++--.||+++.-++.+-++.-...|.+.| ||.. .|++.+..+..+.++...
T Consensus 21 ~R~~~t~e~~e~Ll~ls~vis~~n~r~i~~~LaK~Hf~~d~~~~~~yDWL~eia~rsGD~alv~kA~~lrry~i 94 (101)
T PF05373_consen 21 SRPPLTEEERERLLALSAVISRENFRDIVFLLAKVHFTRDAHPAEAYDWLIEIARRSGDPALVEKAERLRRYFI 94 (101)
T ss_dssp --EE--HHHHHHHHGGGGT--TTTHHHHHHHHCCHHHHEES-TTHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356788888899999999999888888888887776 4543 567777776666665544
No 122
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=25.20 E-value=1e+02 Score=22.25 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 033628 67 TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKD 102 (115)
Q Consensus 67 ~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~ 102 (115)
.|.++|++-...=+..-.|.++-|-....+-.++..
T Consensus 36 ~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~ 71 (150)
T PRK08570 36 ITREDIRELIKEGVIKAKPKKGISRGRARERHEKRK 71 (150)
T ss_pred hhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHH
Confidence 466667666666666678888888877777666654
No 123
>COG2879 Uncharacterized small protein [Function unknown]
Probab=25.10 E-value=66 Score=19.98 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCCCCC
Q 033628 74 EAHRRVMVANHPDAGGS 90 (115)
Q Consensus 74 ~~yr~L~~~~HPDkggs 90 (115)
..|-.-++.+|||+..-
T Consensus 26 dnYVehmr~~hPd~p~m 42 (65)
T COG2879 26 DNYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHHhCcCCCcc
Confidence 45777789999999763
No 124
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=24.96 E-value=96 Score=20.00 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=24.1
Q ss_pred HhCCCCCC-ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 033628 60 ILGVREST-PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAK 101 (115)
Q Consensus 60 iLgl~~~~-~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay 101 (115)
--|++|+. .-.++-+.|..++...+| +++..+..+.+.|
T Consensus 49 ~~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 49 EEGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HHT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred HcCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 34666663 446778888888886654 7888888887777
No 125
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.47 E-value=88 Score=23.62 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=25.8
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhc
Q 033628 56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIML 105 (115)
Q Consensus 56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~~~~~ki~~Ay~~L~ 105 (115)
+.+.+|||+...+.| +++|-.|.-+-.-++-. .-.-+..+.+||..|-
T Consensus 38 dPLtaLGIeArsd~E--RrryAEl~vk~E~~rvekeLA~qrayd~A~~RL~ 86 (200)
T TIGR03759 38 DPLTALGIEARSDEE--RRRYAELWVKQEAQRVEKELAFQRAYDAAWQRLY 86 (200)
T ss_pred ChhhhhccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 558999999886555 55555544433111110 1122344666776664
No 126
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=24.37 E-value=1.6e+02 Score=22.46 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 033628 50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 83 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~ 83 (115)
..++.+|--++||++.+.-...+.++-++|-...
T Consensus 130 ~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~ 163 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAACRQLASRARKHVRAAR 163 (293)
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 4567778888888877766666666666666543
No 127
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=23.96 E-value=79 Score=16.99 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=18.4
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 033628 51 VMTRREAALILGVRESTPTEKVKEAHRRVMVAN 83 (115)
Q Consensus 51 ~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~ 83 (115)
.++..|..+.||++.. .|+...+++..+.
T Consensus 18 g~s~~eia~~l~is~~----tv~~~~~~~~~kl 46 (58)
T smart00421 18 GLTNKEIAERLGISEK----TVKTHLSNIMRKL 46 (58)
T ss_pred CCCHHHHHHHHCCCHH----HHHHHHHHHHHHH
Confidence 4688899999998544 4554444444443
No 128
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=23.79 E-value=91 Score=22.32 Aligned_cols=11 Identities=18% Similarity=-0.094 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 033628 92 YLASKINEAKD 102 (115)
Q Consensus 92 ~~~~ki~~Ay~ 102 (115)
..+.++|++|+
T Consensus 94 ~~L~~lN~~Y~ 104 (158)
T TIGR03180 94 AALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHH
Confidence 45667788886
No 129
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.78 E-value=98 Score=18.14 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.1
Q ss_pred HHhCCCCCCChHHHHHHHHHHH
Q 033628 59 LILGVRESTPTEKVKEAHRRVM 80 (115)
Q Consensus 59 ~iLgl~~~~~~~~Ik~~yr~L~ 80 (115)
.+=|+.|..|++|.+++-|.=.
T Consensus 3 ~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 3 RIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred ccccCCCCCCHHHHHHHHHHHH
Confidence 3458889999999998877643
No 130
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=23.62 E-value=1.2e+02 Score=21.83 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 033628 67 TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKD 102 (115)
Q Consensus 67 ~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~ 102 (115)
.|.++|++-.+.=+..-.|.++-|-....+-.++..
T Consensus 33 ~tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r~ 68 (145)
T cd00481 33 NTREDIRKLIKDGLIIKKPKKGHSRGRARKRHEARR 68 (145)
T ss_pred hhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHH
Confidence 466667666666666678888888877777666653
No 131
>PHA01083 hypothetical protein
Probab=23.57 E-value=1.6e+02 Score=21.31 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=31.7
Q ss_pred hhCCCCCCCCHHHH---HHHhCCCCC----------CChHHHHHHHHHHHHHhC
Q 033628 44 YEGGFQPVMTRREA---ALILGVRES----------TPTEKVKEAHRRVMVANH 84 (115)
Q Consensus 44 ~~~~~~~~m~~~eA---~~iLgl~~~----------~~~~~Ik~~yr~L~~~~H 84 (115)
|+.|.+..++.++| .+.+|+++. ....+++..|..+.++..
T Consensus 36 ~R~G~r~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKln 89 (149)
T PHA01083 36 MRTGVRTYISDEEAIFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQN 89 (149)
T ss_pred HHcCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 56666777888877 568899874 456788999999998873
No 132
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=23.27 E-value=1.4e+02 Score=17.81 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 033628 75 AHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 108 (115)
Q Consensus 75 ~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~ 108 (115)
.++.-+...||+. +..++...|-+.|..|.+..
T Consensus 15 ~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~e 47 (72)
T cd01388 15 RHRRKVLQEYPLK-ENRAISKILGDRWKALSNEE 47 (72)
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3445555667753 34456666666666666544
No 133
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=22.94 E-value=1.3e+02 Score=24.31 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=38.1
Q ss_pred CCHHHHHHHhC-----CCCCCChHHHHHHHHHHHHHhCCCCCCC-----------------------------HHHH-HH
Q 033628 52 MTRREAALILG-----VRESTPTEKVKEAHRRVMVANHPDAGGS-----------------------------HYLA-SK 96 (115)
Q Consensus 52 m~~~eA~~iLg-----l~~~~~~~~Ik~~yr~L~~~~HPDkggs-----------------------------~~~~-~k 96 (115)
-..++|.+++. ..++.+.+|+-++-+-.--..|||.|.- .-.| +=
T Consensus 36 ~~L~~a~~ll~~yr~g~~~~~t~~~lW~Akk~~dS~~HPDTGe~i~~~fRMS~fvP~n~~i~~gMl~p~~t~~~~iFWQw 115 (318)
T TIGR00798 36 KQLEKAREIVEDYKAGKASPLTVDELWRAKKLYDSAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLTPYRSTPGVVFWQW 115 (318)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcCCCCCCcccccccceeeeeccchhHhHhhcCCCCCchhHHHHH
Confidence 34566666654 2233455677777777777899998531 0233 33
Q ss_pred HHHHHHHhcccccCCCC
Q 033628 97 INEAKDIMLRRTKGSNS 113 (115)
Q Consensus 97 i~~Ay~~L~~~~kr~~~ 113 (115)
+|+-|..+-++..|.++
T Consensus 116 ~NQS~Na~vNyaNrNas 132 (318)
T TIGR00798 116 INQSFNAAVNYTNRSGD 132 (318)
T ss_pred hhhhhHHHHHhhccCCC
Confidence 68888777777666554
No 134
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=22.64 E-value=47 Score=20.90 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=19.0
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHhCC
Q 033628 60 ILGVRESTPTEKVKEAHRRVMVANHP 85 (115)
Q Consensus 60 iLgl~~~~~~~~Ik~~yr~L~~~~HP 85 (115)
|..|..+.+.++||+.|.+++....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 34566677888888888888875544
No 135
>PRK05439 pantothenate kinase; Provisional
Probab=22.47 E-value=1.9e+02 Score=22.99 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.1
Q ss_pred CCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 033628 47 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVA 82 (115)
Q Consensus 47 ~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~ 82 (115)
....++|.+|-.++-|++..++.+||.+.|.=|+..
T Consensus 24 ~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarl 59 (311)
T PRK05439 24 STPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRL 59 (311)
T ss_pred cCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999665543
No 136
>PRK14756 hypothetical protein; Provisional
Probab=22.37 E-value=1.2e+02 Score=15.74 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=7.5
Q ss_pred ccchHHHHHHHHHHHH
Q 033628 2 SNQVAPLIAGMAVAAA 17 (115)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (115)
|-+-+.++.++|++.+
T Consensus 8 SL~tTvvaL~~Iva~~ 23 (29)
T PRK14756 8 SLVTTIIVLGLIVAVG 23 (29)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3334445555555544
No 137
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=4e+02 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 033628 68 PTEKVKEAHRRVMVANHPDAGGSHYLASKI 97 (115)
Q Consensus 68 ~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki 97 (115)
|...+|+..-.|++..|||+.-+-+..+.|
T Consensus 415 Dviavkrt~SGLlKLL~Pd~t~~kee~k~i 444 (683)
T COG4930 415 DVIAVKRTTSGLLKLLFPDKTFDKEELKTI 444 (683)
T ss_pred hhHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 455778899999999999998876655554
No 138
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=21.96 E-value=1.3e+02 Score=21.47 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 033628 92 YLASKINEAKD 102 (115)
Q Consensus 92 ~~~~ki~~Ay~ 102 (115)
..+.++|++|+
T Consensus 94 ~~L~~lN~~Y~ 104 (157)
T TIGR03164 94 ARFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHHH
Confidence 34566777776
No 139
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=1.4e+02 Score=20.98 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHhc
Q 033628 68 PTEKVKEAHRRVMVANH-PDAGGSHYLASKINEAKDIML 105 (115)
Q Consensus 68 ~~~~Ik~~yr~L~~~~H-PDkggs~~~~~ki~~Ay~~L~ 105 (115)
-..++.++|+.++...| |++.. ..++-.+||-...
T Consensus 49 aDa~LN~AY~~ll~~l~~~~~~~---aL~kaQRAWi~fR 84 (127)
T COG3755 49 ADAELNKAYKALLKRLQDSPRTK---ALQKAQRAWIAFR 84 (127)
T ss_pred HHHHHHHHHHHHHHHhccChHHH---HHHHHHHHHHHHh
Confidence 35689999999999887 65544 5677777775544
No 140
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=21.26 E-value=1.3e+02 Score=21.28 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHhCCCCCCCh---HHHHHHHHHHHHHhCCCC
Q 033628 50 PVMTRREAALILGVRESTPT---EKVKEAHRRVMVANHPDA 87 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~---~~Ik~~yr~L~~~~HPDk 87 (115)
..++.+|..++||++.+.-. ...++.-++++...-|+.
T Consensus 126 eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~~~~~ 166 (182)
T PRK12511 126 EGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGTGPAR 166 (182)
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34566666667777665322 222333334444444554
No 141
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=21.14 E-value=55 Score=18.30 Aligned_cols=26 Identities=46% Similarity=0.475 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHH
Q 033628 49 QPVMTRREAALILGVRESTPTEKVKEAHRR 78 (115)
Q Consensus 49 ~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~ 78 (115)
-..++..|..++||++++ .|+..+.+
T Consensus 24 ~~g~s~~eIa~~l~~s~~----~v~~~l~r 49 (54)
T PF08281_consen 24 FQGMSYAEIAEILGISES----TVKRRLRR 49 (54)
T ss_dssp TS---HHHHHHHCTS-HH----HHHHHHHH
T ss_pred HHCcCHHHHHHHHCcCHH----HHHHHHHH
Confidence 446889999999998544 55555444
No 142
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.94 E-value=2.4e+02 Score=18.11 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=32.0
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HH----HHHHHHHHHHhcccc
Q 033628 59 LILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YL----ASKINEAKDIMLRRT 108 (115)
Q Consensus 59 ~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~---~~----~~ki~~Ay~~L~~~~ 108 (115)
.+.|+++.++.+||..+-.+.+.+..=-...|. +. ...|..+-..|++..
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~~L 63 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLDSL 63 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999998888877642222222 22 344666666665543
No 143
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.82 E-value=1.9e+02 Score=18.96 Aligned_cols=28 Identities=11% Similarity=-0.120 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033628 4 QVAPLIAGMAVAAAAYAGKYGIRAWQAF 31 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ra~~~a~~~~ 31 (115)
|.++.++-|.++.+.+++=+...+.++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 4455555555555555544444444443
No 144
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=20.15 E-value=2.2e+02 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 033628 50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 83 (115)
Q Consensus 50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~ 83 (115)
.++|.+|-.++=|++...|.+||.+-|.=|....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~iy~pl~~~~ 36 (290)
T TIGR00554 3 MTLSEDEIKRLKGINEDLSLEEVATIYLPLSRLL 36 (290)
T ss_pred CCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999998776543
No 145
>PHA03231 glycoprotein BALF4; Provisional
Probab=20.09 E-value=3.2e+02 Score=25.03 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=12.9
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 033628 1 MSNQVAPLIAGMAVAAAAYAG 21 (115)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (115)
++|+..-++++++|+++.+++
T Consensus 700 l~NPFGg~~iillvia~vv~v 720 (829)
T PHA03231 700 LKNPFGGLAIGLLVIAVLVAV 720 (829)
T ss_pred hcCchHHHHHHHHHHHHhhhh
Confidence 456666677776666555543
Done!