BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033630
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDS|A Chain A, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HDS|B Chain B, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HDS|C Chain C, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HDS|D Chain D, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HF5|A Chain A, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
pdb|3HF5|B Chain B, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
pdb|3HF5|C Chain C, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
pdb|3HF5|D Chain D, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
Length = 116
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 38 SIAEC----SEEIEMFMESDISRRFLEERKKYITPGALKP 73
+I EC E+ +++MESDI + + E K +I G LKP
Sbjct: 72 AIGECWFASEEQYQVYMESDIRKAWFEHGKYFI--GQLKP 109
>pdb|3HFK|A Chain A, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
(H52a) In Complex With 4-Methylmuconolactone
pdb|3HFK|B Chain B, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
(H52a) In Complex With 4-Methylmuconolactone
pdb|3HFK|C Chain C, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
(H52a) In Complex With 4-Methylmuconolactone
pdb|3HFK|D Chain D, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
(H52a) In Complex With 4-Methylmuconolactone
Length = 116
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 38 SIAEC----SEEIEMFMESDISRRFLEERKKYITPGALKP 73
+I EC E+ +++MESDI + + E K +I G LKP
Sbjct: 72 AIGECWFASEEQYQVYMESDIRKAWFEHGKYFI--GQLKP 109
>pdb|4DNK|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Beta Polypeptide
(Ywhab) From Homo Sapiens At 2.20 A Resolution.
pdb|4DNK|B Chain B, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Beta Polypeptide
(Ywhab) From Homo Sapiens At 2.20 A Resolution
Length = 247
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 41 ECSEEIEMFMESDISRRFLEERKKYITPGALKPDQPVCSVGGRGDAY 87
E E+IE ++ DI LE KY+ P A +P+ V + +GD +
Sbjct: 84 EYREKIEAELQ-DICNDVLELLDKYLIPNATQPESKVFYLKXKGDYF 129
>pdb|2BQ0|A Chain A, 14-3-3 Protein Beta (Human)
pdb|2BQ0|B Chain B, 14-3-3 Protein Beta (Human)
pdb|2C23|A Chain A, 14-3-3 Protein Beta (Human) In Complex With Exoenzyme S
Peptide
Length = 245
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 41 ECSEEIEMFMESDISRRFLEERKKYITPGALKPDQPVCSVGGRGDAY 87
E E+IE ++ DI LE KY+ P A +P+ V + +GD +
Sbjct: 83 EYREKIEAELQ-DICNDVLELLDKYLIPNATQPESKVFYLKMKGDYF 128
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 39 IAECSEEIEMFMESDISRRFLEERKKYITPGALKPDQPVCSVGGRGDAYSKSG 91
I + E E+ + SD + ++I+PG+L D PV + G Y +G
Sbjct: 199 ILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG 251
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain
(57-134) From Archaeoglobus Fulgidus Fused To Gcn4,
P61a Mutant
Length = 109
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 24 NKAATARSSNICNGSIAECSEEIEMFMESDISRRFLEERKKYITPGALKP 73
N+ A RS+ + G +++ E+ + ++S +F+ +YI LKP
Sbjct: 28 NEVARLRSAPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKP 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,938,327
Number of Sequences: 62578
Number of extensions: 104725
Number of successful extensions: 162
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)