Query 033630
Match_columns 115
No_of_seqs 151 out of 220
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 6.1E-34 1.3E-38 207.0 4.0 76 32-113 40-119 (119)
2 PLN03221 rapid alkalinization 100.0 7.3E-33 1.6E-37 205.2 5.8 96 12-113 14-137 (137)
3 PF05498 RALF: Rapid ALkaliniz 99.9 5.1E-27 1.1E-31 155.8 5.0 65 44-113 2-66 (66)
4 PF07172 GRP: Glycine rich pro 41.8 25 0.00053 24.7 2.3 13 10-22 1-13 (95)
5 PF07803 GSG-1: GSG1-like prot 20.7 95 0.0021 23.1 2.4 9 31-39 28-36 (118)
6 PF10848 DUF2655: Protein of u 14.5 1.2E+02 0.0027 20.8 1.7 17 73-99 24-40 (82)
7 PF10917 DUF2708: Protein of u 12.4 1E+02 0.0022 19.2 0.7 28 10-39 1-28 (43)
8 COG4902 Uncharacterized protei 12.4 2E+02 0.0044 22.6 2.5 20 11-30 4-23 (189)
9 PF10766 DUF2592: Protein of u 11.8 2.3E+02 0.005 17.4 2.1 17 12-29 2-18 (41)
10 PF08358 Flexi_CP_N: Carlaviru 9.9 1.6E+02 0.0036 18.7 1.0 10 95-104 38-47 (52)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=207.02 Aligned_cols=76 Identities=47% Similarity=0.852 Sum_probs=69.8
Q ss_pred CCcccCccccch---hhhhhcccchhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q 033630 32 SNICNGSIAECS---EEIEMFMESDISRRFLEERKKYITPGALKPDQPVCSVGGRGDAYSKSGGCLP-PRSNRDTRGCPA 107 (115)
Q Consensus 32 ~~~C~Gsi~EC~---~eeE~~M~SE~~RR~L~~~~~yIsYgAL~~d~vpC~~~~~G~sYyn~~~C~p-~paNpY~RGCs~ 107 (115)
...|+|+|+||+ +|+||+||||++||+|+++ +||+|+||++|.|||+ ++|++||| |.+ +|+|||+|||++
T Consensus 40 ~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~-rYISYgALrrd~vPCs--rrG~SYyn---C~~~~~ANPY~RGCs~ 113 (119)
T PLN03222 40 DSKCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGALRRNTVPCS--RRGASYYN---CRRGAQANPYSRGCSA 113 (119)
T ss_pred CCcCCCCHHHhhcccccchhccccHHHHHHHhhc-CeecHHHhcCCCCCCC--CCCCCccc---cCCCCCCCCCCCCchh
Confidence 346999999998 4678999999999999987 5999999999999999 79999997 876 899999999999
Q ss_pred ccccCC
Q 033630 108 YYRCRS 113 (115)
Q Consensus 108 itRCrr 113 (115)
||||||
T Consensus 114 ITrCrR 119 (119)
T PLN03222 114 ITRCRR 119 (119)
T ss_pred hccccC
Confidence 999997
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=99.97 E-value=7.3e-33 Score=205.17 Aligned_cols=96 Identities=41% Similarity=0.716 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhHHHh--hhc--------cCCcccCccccchh--------------h---hhhcccchhhhhhhhhccc
Q 033630 12 LSSCLILALLLFNKAA--TAR--------SSNICNGSIAECSE--------------E---IEMFMESDISRRFLEERKK 64 (115)
Q Consensus 12 ~~~~~~~~l~~~~~~~--~as--------~~~~C~Gsi~EC~~--------------e---eE~~M~SE~~RR~L~~~~~ 64 (115)
|-++|||++-..+.+. |+. ....|+|+|+||+. | +|++||||++||+|+++ +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~-r 92 (137)
T PLN03221 14 FAILLILAVHFWSVAVSSQSIEFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATR-R 92 (137)
T ss_pred HHHHHHHHHHHHhheeecccccccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcC-C
Confidence 4456666665444332 221 13469999999961 2 27789999999999986 5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCccccCC
Q 033630 65 YITPGALKPDQPVCSVGGRGDAYSKSGGCLP-PRSNRDTRGCPAYYRCRS 113 (115)
Q Consensus 65 yIsYgAL~~d~vpC~~~~~G~sYyn~~~C~p-~paNpY~RGCs~itRCrr 113 (115)
||+|+||++|.+||+ ++|++||| |.+ +|+|||+|||++||||||
T Consensus 93 YISYgALrrd~vPCs--rrG~SYyn---C~~~~pANPY~RGCs~ITRCrR 137 (137)
T PLN03221 93 YISYGALRRNTIPCS--RRGASYYN---CRRGAQANPYSRGCSAITRCRR 137 (137)
T ss_pred ccCHHHhccCCCCCC--CCCCCccc---cCCCCCCCCCCCCcccccccCC
Confidence 999999999999999 79999997 776 899999999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.93 E-value=5.1e-27 Score=155.76 Aligned_cols=65 Identities=46% Similarity=0.770 Sum_probs=59.9
Q ss_pred hhhhhcccchhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCC
Q 033630 44 EEIEMFMESDISRRFLEERKKYITPGALKPDQPVCSVGGRGDAYSKSGGCLPPRSNRDTRGCPAYYRCRS 113 (115)
Q Consensus 44 ~eeE~~M~SE~~RR~L~~~~~yIsYgAL~~d~vpC~~~~~G~sYyn~~~C~p~paNpY~RGCs~itRCrr 113 (115)
+|+|++|+||++||+|+++ +||+|+||++|.+||. .+|.+||+ +|+++|+|||+|||++||||||
T Consensus 2 ee~~~~~~s~~~~R~~a~~-~yIsYgaL~~~~~pc~--~~g~~~~~--c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 2 EEEEVVMESEASRRILAAR-RYISYGALRRDRVPCS--PRGCSYYN--CCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred hhHHhhhhhHHHHHHHhcC-CeecchhccCCCCCCC--cccCCCcc--cCCCCCCCCCCCCCCccccCCC
Confidence 5788999999999999988 5999999999999999 79999997 4466999999999999999997
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.83 E-value=25 Score=24.67 Aligned_cols=13 Identities=38% Similarity=0.605 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHHH
Q 033630 10 LHLSSCLILALLL 22 (115)
Q Consensus 10 ~~~~~~~~~~l~~ 22 (115)
|.-|.+|||+|.+
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 4445666666543
No 5
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=20.71 E-value=95 Score=23.06 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=6.3
Q ss_pred cCCcccCcc
Q 033630 31 SSNICNGSI 39 (115)
Q Consensus 31 ~~~~C~Gsi 39 (115)
++.+|.|++
T Consensus 28 sSyWC~GTq 36 (118)
T PF07803_consen 28 SSYWCEGTQ 36 (118)
T ss_pred cccccccce
Confidence 567888764
No 6
>PF10848 DUF2655: Protein of unknown function (DUF2655); InterPro: IPR020371 This entry contains proteins with no known function.
Probab=14.53 E-value=1.2e+02 Score=20.80 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 033630 73 PDQPVCSVGGRGDAYSKSGGCLPPRSN 99 (115)
Q Consensus 73 ~d~vpC~~~~~G~sYyn~~~C~p~paN 99 (115)
+...||.++ .|.|+|+|
T Consensus 24 pe~~~~tgk----------dcnpqpan 40 (82)
T PF10848_consen 24 PEIFPSTGK----------DCNPQPAN 40 (82)
T ss_pred ccccccCCC----------CCCCCchh
Confidence 345677753 58888887
No 7
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=12.38 E-value=1e+02 Score=19.21 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHhHHHhhhccCCcccCcc
Q 033630 10 LHLSSCLILALLLFNKAATARSSNICNGSI 39 (115)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~as~~~~C~Gsi 39 (115)
||+=++.++|++.++.. +.....|.|.-
T Consensus 1 MN~YsvfvFaiLaissv--s~~G~rC~g~~ 28 (43)
T PF10917_consen 1 MNVYSVFVFAILAISSV--SGGGHRCRGSN 28 (43)
T ss_pred CceeeehHHHHhhhhcc--cccccccCCCC
Confidence 67766667766655422 12355786543
No 8
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=12.36 E-value=2e+02 Score=22.64 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHhHHHhhhc
Q 033630 11 HLSSCLILALLLFNKAATAR 30 (115)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~as 30 (115)
||+++++++|.+|....+-+
T Consensus 4 ~i~~~~~~~l~l~t~v~~~~ 23 (189)
T COG4902 4 NISSLTFFVLLLITAVVGIS 23 (189)
T ss_pred hhhhhHHHHHHHHHHHHhhh
Confidence 67888999999887665544
No 9
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=11.80 E-value=2.3e+02 Score=17.44 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHhHHHhhh
Q 033630 12 LSSCLILALLLFNKAATA 29 (115)
Q Consensus 12 ~~~~~~~~l~~~~~~~~a 29 (115)
+|| |++|+.|++..+..
T Consensus 2 lkS-l~fa~iMVPVvma~ 18 (41)
T PF10766_consen 2 LKS-LAFAVIMVPVVMAL 18 (41)
T ss_pred hHH-HHHHHHHHHHHHHH
Confidence 455 67888888866544
No 10
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=9.86 E-value=1.6e+02 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 033630 95 PPRSNRDTRG 104 (115)
Q Consensus 95 p~paNpY~RG 104 (115)
+-++|+|+|-
T Consensus 38 ~d~tN~y~Rp 47 (52)
T PF08358_consen 38 GDPTNPYSRP 47 (52)
T ss_pred CCcCcccCCc
Confidence 4688999873
Done!