Query 033630
Match_columns 115
No_of_seqs 151 out of 220
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdm_A Sarcolipin; helix, memb 14.0 1.3E+02 0.0044 16.6 2.2 21 1-21 1-21 (31)
2 1lu0_A CMTI-I, trypsin inhibit 10.6 93 0.0032 17.0 0.9 12 103-114 1-13 (29)
3 4aui_A Porin (PORB); membrane 9.0 71 0.0024 24.1 0.0 18 13-30 3-20 (327)
4 2ljs_A Trypsin inhibitor 3; be 7.2 1.6E+02 0.0053 16.1 0.9 12 104-115 3-15 (30)
5 1e0f_I Haemadin, factor IIA; c 4.8 2.1E+02 0.0071 17.5 0.6 8 46-53 48-55 (57)
6 1cz6_A Protein (androctonin); 4.0 2.3E+02 0.008 14.8 0.3 10 78-89 10-19 (26)
7 3u02_A Putative transcription- 3.8 2.3E+02 0.008 22.0 0.2 11 97-107 46-57 (252)
8 3phu_A RNA-directed RNA polyme 3.7 2.2E+02 0.0074 21.5 0.0 21 38-58 187-211 (219)
9 3b79_A Toxin secretion ATP-bin 3.5 5.7E+02 0.019 15.9 1.9 12 15-26 7-18 (129)
10 1qle_D Cytochrome AA3, ccytoch 3.4 5.3E+02 0.018 14.8 1.5 13 12-24 30-42 (43)
No 1
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.04 E-value=1.3e+02 Score=16.61 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=14.9
Q ss_pred CccccccchhhhhHHHHHHHH
Q 033630 1 MESKLTNLSLHLSSCLILALL 21 (115)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~ 21 (115)
||..+..|-+||-..||--|.
T Consensus 1 m~~n~qELf~NFt~vLI~vlL 21 (31)
T 1jdm_A 1 MGINTRELFLNFTIVLITVIL 21 (31)
T ss_dssp CCSCSSSSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH
Confidence 788888999999854444333
No 2
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=10.64 E-value=93 Score=17.05 Aligned_cols=12 Identities=33% Similarity=0.944 Sum_probs=5.9
Q ss_pred CCCCCcc-ccCCC
Q 033630 103 RGCPAYY-RCRSG 114 (115)
Q Consensus 103 RGCs~it-RCrr~ 114 (115)
|+|..|. .|++|
T Consensus 1 r~CPrIlm~CK~D 13 (29)
T 1lu0_A 1 RVCPRILLECKKD 13 (29)
T ss_dssp CCCCSCCCBCSSG
T ss_pred CCCchhhhhcccc
Confidence 4455443 45554
No 3
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=9.00 E-value=71 Score=24.12 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=0.5
Q ss_pred hHHHHHHHHHhHHHhhhc
Q 033630 13 SSCLILALLLFNKAATAR 30 (115)
Q Consensus 13 ~~~~~~~l~~~~~~~~as 30 (115)
|.++.|+|+.++.++|++
T Consensus 3 KtllAla~~a~~a~Aqss 20 (327)
T 4aui_A 3 KSLIALTLAALPVAAMAD 20 (327)
T ss_dssp -----------------C
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344556666566666665
No 4
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=7.17 E-value=1.6e+02 Score=16.14 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=5.8
Q ss_pred CCCCc-cccCCCC
Q 033630 104 GCPAY-YRCRSGS 115 (115)
Q Consensus 104 GCs~i-tRCrr~s 115 (115)
-|..| -.|+|||
T Consensus 3 ~cprilkkckrds 15 (30)
T 2ljs_A 3 ACPRILKKCRRDS 15 (30)
T ss_dssp CCCCCCCBCSSGG
T ss_pred ccHHHHHHhcccc
Confidence 34443 3566654
No 5
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=4.81 E-value=2.1e+02 Score=17.50 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=4.4
Q ss_pred hhhcccch
Q 033630 46 IEMFMESD 53 (115)
Q Consensus 46 eE~~M~SE 53 (115)
|||+.|.|
T Consensus 48 eefeidee 55 (57)
T 1e0f_I 48 EEFEIDEE 55 (57)
T ss_dssp CCCCCCCC
T ss_pred ceeecccc
Confidence 55666544
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=3.99 E-value=2.3e+02 Score=14.83 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCC
Q 033630 78 CSVGGRGDAYSK 89 (115)
Q Consensus 78 C~~~~~G~sYyn 89 (115)
|. ++|.-||.
T Consensus 10 cr--rrggcyyk 19 (26)
T 1cz6_A 10 CR--RRGGCYYK 19 (26)
T ss_dssp CC--SSSCCEEE
T ss_pred HH--hcCceEEE
Confidence 77 78888886
No 7
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=3.77 E-value=2.3e+02 Score=21.96 Aligned_cols=11 Identities=36% Similarity=0.211 Sum_probs=4.1
Q ss_pred CCCCC-CCCCCC
Q 033630 97 RSNRD-TRGCPA 107 (115)
Q Consensus 97 paNpY-~RGCs~ 107 (115)
|+.|| +|||..
T Consensus 46 P~iP~KTrgN~a 57 (252)
T 3u02_A 46 PNVPYKTRGNGA 57 (252)
T ss_dssp TTC-----CCEE
T ss_pred CCCCccCCCCcE
Confidence 55666 677754
No 8
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=3.73 E-value=2.2e+02 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred ccccchhhhhhcc----cchhhhhh
Q 033630 38 SIAECSEEIEMFM----ESDISRRF 58 (115)
Q Consensus 38 si~EC~~eeE~~M----~SE~~RR~ 58 (115)
+++||++||||.+ ..|.+||.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (219)
T 3phu_A 187 SSDELQDYEDLALALTSAEESNRRS 211 (219)
T ss_dssp -------------------------
T ss_pred cHHhhhhHHHHHHHhhhhhhhcccc
Confidence 4567777777633 34556663
No 9
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=3.45 E-value=5.7e+02 Score=15.89 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHH
Q 033630 15 CLILALLLFNKA 26 (115)
Q Consensus 15 ~~~~~l~~~~~~ 26 (115)
|++.+|+|++.+
T Consensus 7 cgla~L~~i~~~ 18 (129)
T 3b79_A 7 PLLNSLIYVSRY 18 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
No 10
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=3.39 E-value=5.3e+02 Score=14.76 Aligned_cols=13 Identities=38% Similarity=0.444 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhH
Q 033630 12 LSSCLILALLLFN 24 (115)
Q Consensus 12 ~~~~~~~~l~~~~ 24 (115)
+..++++.|++|+
T Consensus 30 ~~~~~ll~maif~ 42 (43)
T 1qle_D 30 LSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc
Done!