BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033634
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + EP +IA +IKKEFDK Y W CIV
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI-EP-DIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 4 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 91
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 6 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 93
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA IKKEFDK Y W CIV
Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 5 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDF 64
KAVI DM E MQQ + + +IA IKKEFDK Y W CIVG +F
Sbjct: 1 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GSFVTHCYGNFIYFRVGSLAILLFRG 90
GS+VTH +FIYF +G +AILLF+
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKS 84
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E +QQ + + +IA FIKKEFD+ + W C+V
Sbjct: 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEK--DIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +A+LLF+
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKS 88
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
M + KAVI DM E MQQ + + +IA +IKKEFDK Y W CIV
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GT--DFGSFVTHCYGNFIYFRVGSLAILLFRG 90
G +FGS+VTH +FIYF +G +AILLF+
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFKS 90
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 6 AVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFG 65
+V+ DM E MQ V + +IA IKKEFD+ Y W C+VG +FG
Sbjct: 19 SVVKNVDMTEEMQIDAIDCANQALQKYNVEK--DIAAHIKKEFDRKYDPTWHCVVGRNFG 76
Query: 66 SFVTHCYGNFIYFRVGSLAILLFR 89
S+VTH NFIYF +G +AILLF+
Sbjct: 77 SYVTHETKNFIYFYIGQVAILLFK 100
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 39 EIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
+IA +KK+ D YG W IVG +FGS+VTH G+F+YF +G LA L+F+
Sbjct: 45 DIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFK 95
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 271 FGSNVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 321
>pdb|1JF4|A Chain A, Crystal Structure Of Component Iv Glycera Dibranchiata
Monomeric Hemoglobin
pdb|1JL6|A Chain A, Crystal Structure Of Cn-Ligated Component Iv Glycera
Dibranchiata Monomeric Hemoglobin
pdb|1VRF|A Chain A, Solution Structure Of Component Iv Glycera Dibranchiata
Monomeric Hemoglobin-Co
pdb|1VRE|A Chain A, Solution Structure Of Component Iv Glycera Dibranchiata
Monomeric Hemoglobin-Co
Length = 147
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 56 WQCIVGTDFGSFV-THCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAV 109
W+ I G+D G+ V C+ F+ A+ F G++ PG D A A++ V
Sbjct: 14 WKDIAGSDNGAGVGKECFTKFLSAHHDMAAVFGFSGASDPGVADLGAKVLAQIGV 68
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 608 FGSNVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 658
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 627 FGSNVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 677
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 608 FGSNVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 658
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 272 FGSNVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 322
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 605 FGSNVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 655
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 608 FGSDVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 658
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 622 FGSDVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 672
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAK-LAVETVQA 114
FGS VT C GNF FR LLFR + + N + K L E V+A
Sbjct: 605 FGSDVTDCSGNFCLFR-SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKA 655
>pdb|3H2T|A Chain A, Crystal Structure Of Gene Product 6, Baseplate Protein
Of Bacteriophage T4
pdb|3H2T|B Chain B, Crystal Structure Of Gene Product 6, Baseplate Protein
Of Bacteriophage T4
pdb|3H3W|A Chain A, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|B Chain B, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|C Chain C, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|D Chain D, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|E Chain E, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|F Chain F, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|G Chain G, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|H Chain H, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|I Chain I, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|J Chain J, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|K Chain K, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3W|L Chain L, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped
Baseplate
pdb|3H3Y|A Chain A, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
Baseplate
pdb|3H3Y|B Chain B, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
Baseplate
pdb|3H3Y|C Chain C, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|D Chain D, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|E Chain E, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|F Chain F, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|G Chain G, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|H Chain H, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|I Chain I, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|J Chain J, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|K Chain K, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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pdb|3H3Y|L Chain L, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped
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Length = 335
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 54 TGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPG 95
T +C+ TD+ +FV+ +G+ I A+ F S PG
Sbjct: 2 TQQRCVTATDYDTFVSERFGSII------QAVQTFTDSTKPG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,945,779
Number of Sequences: 62578
Number of extensions: 101310
Number of successful extensions: 201
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 24
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)