Query 033634
Match_columns 114
No_of_seqs 122 out of 546
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3430 Dynein light chain typ 100.0 4.1E-41 8.8E-46 222.5 11.5 90 1-91 1-90 (90)
2 PTZ00059 dynein light chain; P 100.0 2.2E-40 4.7E-45 221.1 12.2 89 1-91 2-90 (90)
3 PLN03058 dynein light chain ty 100.0 2.5E-39 5.4E-44 228.0 12.9 95 3-97 33-128 (128)
4 PF01221 Dynein_light: Dynein 100.0 3.7E-39 7.9E-44 214.0 9.6 89 1-91 1-89 (89)
5 PF04155 Ground-like: Ground-l 97.4 0.0021 4.5E-08 41.1 8.6 53 36-89 23-76 (76)
6 PF05075 DUF684: Protein of un 88.1 6.1 0.00013 31.9 9.3 55 37-91 188-252 (345)
7 PF12006 DUF3500: Protein of u 81.9 11 0.00023 30.3 7.9 51 8-62 216-267 (313)
8 PF15650 Tox-REase-9: Restrict 73.7 2.8 6E-05 28.0 2.0 18 44-61 70-87 (89)
9 PF10703 MoaF: Molybdenum cofa 58.6 16 0.00034 28.9 3.9 37 55-94 182-219 (265)
10 KOG2451 Aldehyde dehydrogenase 58.2 21 0.00046 30.2 4.7 46 4-49 49-94 (503)
11 PF12652 CotJB: CotJB protein; 56.9 5.5 0.00012 25.8 0.9 17 39-55 40-56 (78)
12 PF06457 Ectatomin: Ectatomin; 48.1 43 0.00094 18.2 3.4 26 21-50 9-34 (34)
13 PF12362 DUF3646: DNA polymera 47.4 25 0.00054 24.3 3.0 29 37-65 48-76 (117)
14 TIGR02084 leud 3-isopropylmala 46.7 18 0.0004 26.2 2.4 32 37-68 26-61 (156)
15 cd03472 Rieske_RO_Alpha_BPDO_l 46.1 43 0.00092 23.0 4.1 40 48-92 1-41 (128)
16 PF08776 VASP_tetra: VASP tetr 44.8 43 0.00093 19.1 3.2 32 15-50 6-37 (40)
17 PF13742 tRNA_anti_2: OB-fold 44.6 74 0.0016 20.8 4.9 52 38-93 5-62 (99)
18 PF06150 ChaB: ChaB; InterPro 44.1 71 0.0015 19.3 4.6 46 11-57 7-54 (57)
19 PRK00286 xseA exodeoxyribonucl 43.2 66 0.0014 26.5 5.4 51 37-93 8-64 (438)
20 PF07742 BTG: BTG family; Int 42.5 20 0.00043 24.8 1.9 21 37-57 27-47 (118)
21 PRK13007 succinyl-diaminopimel 42.0 1.3E+02 0.0028 23.3 6.7 41 13-53 1-42 (352)
22 PF14900 DUF4493: Domain of un 38.9 77 0.0017 23.7 4.8 37 46-82 119-160 (235)
23 PF12550 GCR1_C: Transcription 38.0 11 0.00024 24.1 0.0 12 46-57 29-40 (81)
24 cd03538 Rieske_RO_Alpha_AntDO 36.3 1E+02 0.0022 21.6 4.9 46 42-92 9-55 (146)
25 PF11858 DUF3378: Domain of un 30.9 74 0.0016 20.5 3.1 27 72-98 29-55 (81)
26 PRK14023 homoaconitate hydrata 30.2 39 0.00084 24.8 1.9 32 38-69 29-64 (166)
27 PF08006 DUF1700: Protein of u 30.0 1.3E+02 0.0028 21.6 4.6 39 11-49 15-65 (181)
28 COG1352 CheR Methylase of chem 29.8 59 0.0013 25.5 3.0 49 4-58 128-178 (268)
29 COG1570 XseA Exonuclease VII, 29.6 79 0.0017 26.9 3.8 52 38-93 9-64 (440)
30 cd01579 AcnA_Bact_Swivel Bacte 29.1 37 0.00079 23.6 1.5 18 51-68 45-62 (121)
31 PF09868 DUF2095: Uncharacteri 28.8 1.2E+02 0.0025 21.5 4.0 17 38-54 95-115 (128)
32 PRK06489 hypothetical protein; 27.7 40 0.00088 26.5 1.7 33 37-69 135-168 (360)
33 PF10655 DUF2482: Hypothetical 26.8 50 0.0011 22.3 1.8 29 37-65 24-65 (100)
34 PF02881 SRP54_N: SRP54-type p 26.0 1E+02 0.0022 18.6 3.1 39 9-47 35-74 (75)
35 TIGR03849 arch_ComA phosphosul 25.9 2.2E+02 0.0048 22.1 5.5 49 10-61 94-154 (237)
36 TIGR00237 xseA exodeoxyribonuc 25.8 2.7E+02 0.006 23.1 6.4 51 38-94 3-59 (432)
37 KOG4194 Membrane glycoprotein 25.2 1E+02 0.0022 28.0 3.8 25 53-77 586-610 (873)
38 KOG1569 50S ribosomal protein 25.2 62 0.0013 26.3 2.3 36 38-73 226-282 (323)
39 PF06925 MGDG_synth: Monogalac 25.0 80 0.0017 22.2 2.7 27 38-64 2-28 (169)
40 KOG2130 Phosphatidylserine-spe 25.0 59 0.0013 26.9 2.2 19 53-71 277-295 (407)
41 PF01743 PolyA_pol: Poly A pol 24.6 2.3E+02 0.0049 19.2 4.9 37 41-79 28-64 (126)
42 PF06884 DUF1264: Protein of u 24.3 56 0.0012 24.3 1.8 19 40-58 98-116 (171)
43 cd01578 AcnA_Mitochon_Swivel M 23.7 46 0.001 24.2 1.3 18 52-69 67-84 (149)
44 PF08015 Pheromone: Fungal mat 23.2 46 0.001 20.4 1.1 14 47-60 54-69 (69)
45 PF10440 WIYLD: Ubiquitin-bind 22.9 91 0.002 19.5 2.3 42 21-64 10-51 (65)
46 PF00249 Myb_DNA-binding: Myb- 22.8 1.1E+02 0.0023 17.0 2.5 23 23-45 10-32 (48)
47 KOG2915 tRNA(1-methyladenosine 22.7 59 0.0013 26.3 1.8 34 46-79 37-71 (314)
48 cd03545 Rieske_RO_Alpha_OHBDO_ 22.7 2.8E+02 0.0061 19.5 5.3 45 42-91 11-57 (150)
49 PF06840 DUF1241: Protein of u 22.7 60 0.0013 23.7 1.7 14 37-50 122-135 (154)
50 cd05392 RasGAP_Neurofibromin_l 22.4 59 0.0013 25.7 1.7 37 24-61 138-174 (323)
51 PF08958 DUF1871: Domain of un 22.2 74 0.0016 20.5 1.9 29 24-54 26-54 (79)
52 PF05184 SapB_1: Saposin-like 22.1 1.4E+02 0.0029 15.6 3.0 31 16-48 5-35 (39)
53 PF15571 Imm25: Immunity prote 21.9 58 0.0013 23.0 1.4 23 37-59 17-39 (124)
54 cd00197 VHS_ENTH_ANTH VHS, ENT 21.9 70 0.0015 21.1 1.8 22 35-59 33-54 (115)
55 smart00099 btg1 tob/btg1 famil 21.6 93 0.002 21.4 2.4 38 20-57 7-47 (108)
56 TIGR01916 F420_cofE F420-0:gam 21.4 1.3E+02 0.0029 23.4 3.5 33 36-68 123-155 (243)
57 cd01674 Homoaconitase_Swivel H 21.3 95 0.0021 22.1 2.4 35 37-71 24-62 (129)
58 COG4001 Predicted metal-bindin 21.3 33 0.00071 23.2 0.1 46 13-58 3-54 (102)
59 PF08594 UPF0300: Uncharacteri 21.2 2.9E+02 0.0063 21.3 5.2 19 55-73 95-113 (215)
60 PRK13293 F420-0--gamma-glutamy 21.2 1.4E+02 0.0029 23.4 3.5 31 36-66 124-154 (245)
61 PF13798 PCYCGC: Protein of un 21.2 43 0.00093 24.6 0.7 33 19-54 115-147 (158)
62 KOG3252 Uncharacterized conser 21.0 1.2E+02 0.0025 23.3 3.0 33 13-46 2-34 (217)
63 PRK00466 acetyl-lysine deacety 20.9 3.1E+02 0.0068 21.3 5.6 43 15-58 6-49 (346)
64 PF12415 rpo132: Poxvirus DNA 20.5 1.7E+02 0.0036 16.0 2.9 10 9-18 7-16 (33)
65 TIGR01738 bioH putative pimelo 20.5 64 0.0014 22.2 1.4 29 36-69 51-79 (245)
No 1
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=100.00 E-value=4.1e-41 Score=222.53 Aligned_cols=90 Identities=61% Similarity=1.007 Sum_probs=86.5
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634 1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV 80 (114)
Q Consensus 1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i 80 (114)
|.+.+++|+.+|||++||++|++++.+|+++|+. +.++||..||++||++||++||||||++|||+|||++++||||++
T Consensus 1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~ 79 (90)
T KOG3430|consen 1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL 79 (90)
T ss_pred CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence 7889999999999999999999999999999994 349999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEecC
Q 033634 81 GSLAILLFRGS 91 (114)
Q Consensus 81 ~~~~~LifKt~ 91 (114)
|.++|||||+.
T Consensus 80 g~l~illfK~~ 90 (90)
T KOG3430|consen 80 GVLAILLFKCA 90 (90)
T ss_pred ceEEEEEEecC
Confidence 99999999984
No 2
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=2.2e-40 Score=221.12 Aligned_cols=89 Identities=54% Similarity=0.939 Sum_probs=86.9
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634 1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV 80 (114)
Q Consensus 1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i 80 (114)
|++.+++|+.+|||++||++|++++.+|+++|+.+ +|||++||++||++|||+||||||++|||++||++++||||++
T Consensus 2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~--kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~ 79 (90)
T PTZ00059 2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL 79 (90)
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence 78889999999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEecC
Q 033634 81 GSLAILLFRGS 91 (114)
Q Consensus 81 ~~~~~LifKt~ 91 (114)
|+++|||||++
T Consensus 80 ~~~~vLlfK~~ 90 (90)
T PTZ00059 80 GQVAILLFKSG 90 (90)
T ss_pred CCEEEEEEecC
Confidence 99999999985
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=228.01 Aligned_cols=95 Identities=40% Similarity=0.705 Sum_probs=89.1
Q ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeC
Q 033634 3 EGKAVIGETDMLETMQQDALDLAAKALDFFDV-TEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVG 81 (114)
Q Consensus 3 ~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~-e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~ 81 (114)
+.++.|+.+|||++||++|+++|.+|+++++. .+.++||.+||++||++|||+||||||++|||+|||++++||||++|
T Consensus 33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig 112 (128)
T PLN03058 33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID 112 (128)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence 46899999999999999999999999999863 23499999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecCCCCCCC
Q 033634 82 SLAILLFRGSAAPGSD 97 (114)
Q Consensus 82 ~~~~LifKt~~~~~~~ 97 (114)
+++||||||+.+|+++
T Consensus 113 ~~aiLLfKt~~~~~~~ 128 (128)
T PLN03058 113 KVYILLFKTAVEPLDQ 128 (128)
T ss_pred CEEEEEEeccCccCCC
Confidence 9999999999999863
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=3.7e-39 Score=214.03 Aligned_cols=89 Identities=51% Similarity=0.897 Sum_probs=84.6
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634 1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV 80 (114)
Q Consensus 1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i 80 (114)
|++.+++|+.+|||++||++|++.|.+|+++++++ +++|++||++||++|||+||||||++|||++||++++++||++
T Consensus 1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~--~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~ 78 (89)
T PF01221_consen 1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDE--KEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI 78 (89)
T ss_dssp SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence 89999999999999999999999999999999976 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEecC
Q 033634 81 GSLAILLFRGS 91 (114)
Q Consensus 81 ~~~~~LifKt~ 91 (114)
++++||||||+
T Consensus 79 ~~~~~li~kt~ 89 (89)
T PF01221_consen 79 GNIAFLIFKTQ 89 (89)
T ss_dssp TTEEEEEEEE-
T ss_pred CCEEEEEEecC
Confidence 99999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.43 E-value=0.0021 Score=41.11 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEe
Q 033634 36 EPTEIARFIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFR 89 (114)
Q Consensus 36 ~~~diA~~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifK 89 (114)
++..+++.|.+.++++||+.+-||+++ +|....... ..|.-...++...++|+
T Consensus 23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 458899999999999999999999999 776666555 78888899999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=88.13 E-value=6.1 Score=31.87 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcccCCC-ceEEEEeC--------CcceeEEEccCcEEE-EEeCCEEEEEEecC
Q 033634 37 PTEIARFIKKEFDKAYGT-GWQCIVGT--------DFGSFVTHCYGNFIY-FRVGSLAILLFRGS 91 (114)
Q Consensus 37 ~~diA~~IK~~lD~kyG~-~WHcIVG~--------~Fgs~vthe~~~~i~-F~i~~~~~LifKt~ 91 (114)
..+.|..||+.||+..-. .+-++|-. .|.....+....+|. |.-|+..++||||.
T Consensus 188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~ 252 (345)
T PF05075_consen 188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSK 252 (345)
T ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeC
Confidence 478999999999997654 58888822 112222345556665 56899999999994
No 7
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=81.90 E-value=11 Score=30.28 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=33.3
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHH-HHHhcccCCCceEEEEeC
Q 033634 8 IGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFI-KKEFDKAYGTGWQCIVGT 62 (114)
Q Consensus 8 V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~I-K~~lD~kyG~~WHcIVG~ 62 (114)
|..++|+.+.|+.+..++..-+..++.+.-+..-+.| +..||+ +|-+=+|.
T Consensus 216 l~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~----t~faW~G~ 267 (313)
T PF12006_consen 216 LAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDE----TYFAWAGG 267 (313)
T ss_pred cChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccc----eEEEEecC
Confidence 6789999999999999999988877743112222233 445554 44444443
No 8
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=73.70 E-value=2.8 Score=27.97 Aligned_cols=18 Identities=39% Similarity=0.896 Sum_probs=15.3
Q ss_pred HHHHhcccCCCceEEEEe
Q 033634 44 IKKEFDKAYGTGWQCIVG 61 (114)
Q Consensus 44 IK~~lD~kyG~~WHcIVG 61 (114)
=|++|...||.+|.|+|-
T Consensus 70 Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 70 YKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHhcCccCCCeeEEee
Confidence 357899999999999973
No 9
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=58.60 E-value=16 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.629 Sum_probs=26.6
Q ss_pred ceEEEEeCCcceeEEEccCcEEEEEe-CCEEEEEEecCCCC
Q 033634 55 GWQCIVGTDFGSFVTHCYGNFIYFRV-GSLAILLFRGSAAP 94 (114)
Q Consensus 55 ~WHcIVG~~Fgs~vthe~~~~i~F~i-~~~~~LifKt~~~~ 94 (114)
+|||+.|..=|-. +....-++++ .++.++.|+-.--|
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrEkiiP 219 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWREKIIP 219 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEecccc
Confidence 7999999865532 3477777887 47888888865443
No 10
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=58.23 E-value=21 Score=30.24 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=37.3
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhc
Q 033634 4 GKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFD 49 (114)
Q Consensus 4 ~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD 49 (114)
+.+.=...||+-+.-+++|+.+.+|+..|.+-..++-++-|++|.|
T Consensus 49 geii~~V~~~~V~e~~kAI~aA~EaF~s~~~~takeRs~lLrkwy~ 94 (503)
T KOG2451|consen 49 GEIIGKVADMTVEEAEKAIDAAYEAFKSYRNLTAKERSALLRKWYE 94 (503)
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 3455577899999999999999999999987666777777777665
No 11
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=56.92 E-value=5.5 Score=25.78 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcccCCCc
Q 033634 39 EIARFIKKEFDKAYGTG 55 (114)
Q Consensus 39 diA~~IK~~lD~kyG~~ 55 (114)
..-+.+++.+.++|||.
T Consensus 40 ~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 40 KQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34467889999999994
No 12
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=48.13 E-value=43 Score=18.19 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHhcc
Q 033634 21 ALDLAAKALDFFDVTEPTEIARFIKKEFDK 50 (114)
Q Consensus 21 ai~~~~~a~~~~~~e~~~diA~~IK~~lD~ 50 (114)
+.-....-.+++. .+||.+||+..|+
T Consensus 9 icpt~~~~akkc~----g~iat~ik~~c~k 34 (34)
T PF06457_consen 9 ICPTVKPWAKKCS----GSIATMIKRKCDK 34 (34)
T ss_dssp HHHHHHHHHCTBS----CCHHHHHHHHCH-
T ss_pred cCcccHHHHHHcc----ccHHHHHHHHhCC
Confidence 3334444455565 4599999998774
No 13
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=47.41 E-value=25 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCcc
Q 033634 37 PTEIARFIKKEFDKAYGTGWQCIVGTDFG 65 (114)
Q Consensus 37 ~~diA~~IK~~lD~kyG~~WHcIVG~~Fg 65 (114)
.+++|..|++.|.+--|..|.|.+++.=|
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 48999999999999999999999998644
No 14
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=46.65 E-value=18 Score=26.23 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhc----ccCCCceEEEEeCCcceeE
Q 033634 37 PTEIARFIKKEFD----KAYGTGWQCIVGTDFGSFV 68 (114)
Q Consensus 37 ~~diA~~IK~~lD----~kyG~~WHcIVG~~Fgs~v 68 (114)
.+++++++-..+| +++.+..-+|.|+|||+==
T Consensus 26 ~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GS 61 (156)
T TIGR02084 26 PKELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCGS 61 (156)
T ss_pred HHHHHhhhhccCChhHHhhcCCCCEEEccCcccCCC
Confidence 4677777766666 4456677788888999543
No 15
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=46.10 E-value=43 Score=23.04 Aligned_cols=40 Identities=10% Similarity=0.368 Sum_probs=27.6
Q ss_pred hcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCC
Q 033634 48 FDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSA 92 (114)
Q Consensus 48 lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~ 92 (114)
|++-|...|+.+.=. .+. +++.+..+.+++..++|+|..+
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~~~~~i~l~r~~~ 41 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYMGEDPVIVVRQKD 41 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEECCceEEEEECCC
Confidence 466688899986543 332 3456666778888889998643
No 16
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=44.80 E-value=43 Score=19.12 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcc
Q 033634 15 ETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDK 50 (114)
Q Consensus 15 ~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~ 50 (114)
+.+++++++..+.-+++.+ .+|-..|+++|.+
T Consensus 6 e~~KqEIL~EvrkEl~K~K----~EIIeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK----EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 4578899999999998876 5588888888765
No 17
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=44.63 E-value=74 Score=20.84 Aligned_cols=52 Identities=23% Similarity=0.521 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccc--CCCceEEEEeCCcceeEEEccCcEEEEEe----CCEEEEEEecCCC
Q 033634 38 TEIARFIKKEFDKA--YGTGWQCIVGTDFGSFVTHCYGNFIYFRV----GSLAILLFRGSAA 93 (114)
Q Consensus 38 ~diA~~IK~~lD~k--yG~~WHcIVG~~Fgs~vthe~~~~i~F~i----~~~~~LifKt~~~ 93 (114)
.++.++||+.++.. ++..| |.|+= |.++.-.+..+||.+ ..+...+|++...
T Consensus 5 s~l~~~ik~~le~~~~~~~vw--V~GEI--s~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~ 62 (99)
T PF13742_consen 5 SELNNYIKDLLERDPPLPNVW--VEGEI--SNLKRHSSGHVYFTLKDEEASISCVIFRSRAR 62 (99)
T ss_pred HHHHHHHHHHHhcCCCcCCEE--EEEEE--eecEECCCceEEEEEEcCCcEEEEEEEHHHHh
Confidence 67899999999998 56778 55651 122332677788887 3678889998754
No 18
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=44.09 E-value=71 Score=19.25 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCC-hHHHH-HHHHHHhcccCCCceE
Q 033634 11 TDMLETMQQDALDLAAKALDFFDVTE-PTEIA-RFIKKEFDKAYGTGWQ 57 (114)
Q Consensus 11 sdM~~emq~~ai~~~~~a~~~~~~e~-~~diA-~~IK~~lD~kyG~~WH 57 (114)
..||..-|+--++.-..|++.|++++ --.+| ..+|+...+ -|+.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 45777777777777788888885431 11233 678999999 788896
No 19
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=43.21 E-value=66 Score=26.45 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeC--CcceeEEEccCcEEEEEeC----CEEEEEEecCCC
Q 033634 37 PTEIARFIKKEFDKAYGTGWQCIVGT--DFGSFVTHCYGNFIYFRVG----SLAILLFRGSAA 93 (114)
Q Consensus 37 ~~diA~~IK~~lD~kyG~~WHcIVG~--~Fgs~vthe~~~~i~F~i~----~~~~LifKt~~~ 93 (114)
..++..+||..|+..++..| |.|+ +|- +-.+-.+||.+. .+...+|++...
T Consensus 8 vsel~~~ik~~le~~~~~v~--v~gEis~~~----~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~ 64 (438)
T PRK00286 8 VSELNRYVKSLLERDLGQVW--VRGEISNFT----RHSSGHWYFTLKDEIAQIRCVMFKGSAR 64 (438)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEEeCCCe----eCCCCeEEEEEEcCCcEEEEEEEcChhh
Confidence 46899999999999988888 5666 443 224557899873 589999998654
No 20
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=42.47 E-value=20 Score=24.84 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHhcccCCCceE
Q 033634 37 PTEIARFIKKEFDKAYGTGWQ 57 (114)
Q Consensus 37 ~~diA~~IK~~lD~kyG~~WH 57 (114)
....++.|...|-++|.++|+
T Consensus 27 ~~~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 27 VDRFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 345789999999999999997
No 21
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=41.98 E-value=1.3e+02 Score=23.27 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHhcccCC
Q 033634 13 MLETMQQDALDLAAKALDFFDVT-EPTEIARFIKKEFDKAYG 53 (114)
Q Consensus 13 M~~emq~~ai~~~~~a~~~~~~e-~~~diA~~IK~~lD~kyG 53 (114)
|+.++..++++...+.++..... +..++|++|++.|++.+|
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~ 42 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRALPH 42 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcC
Confidence 55567788999999998855432 247899999999998633
No 22
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=38.89 E-value=77 Score=23.73 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=29.7
Q ss_pred HHhcccCCCceEEEEeCCcceeEEE--ccC---cEEEEEeCC
Q 033634 46 KEFDKAYGTGWQCIVGTDFGSFVTH--CYG---NFIYFRVGS 82 (114)
Q Consensus 46 ~~lD~kyG~~WHcIVG~~Fgs~vth--e~~---~~i~F~i~~ 82 (114)
..|.+.|+..|++-|...-+..++. ... ...||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 4567778888999999865777877 555 899999988
No 23
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=37.97 E-value=11 Score=24.05 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=10.0
Q ss_pred HHhcccCCCceE
Q 033634 46 KEFDKAYGTGWQ 57 (114)
Q Consensus 46 ~~lD~kyG~~WH 57 (114)
+.|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 467899999996
No 24
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=36.28 E-value=1e+02 Score=21.58 Aligned_cols=46 Identities=17% Similarity=0.485 Sum_probs=32.4
Q ss_pred HHHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCC
Q 033634 42 RFIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSA 92 (114)
Q Consensus 42 ~~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~ 92 (114)
+....++++-|...|+.+.-. .. -+++.++-+.+++..++|+|..+
T Consensus 9 ~~~~~e~~~i~~~~W~~v~~~~el-----p~~G~~~~~~i~g~~i~v~r~~~ 55 (146)
T cd03538 9 EIFALEMERLFGNAWIYVGHESQV-----PNPGDYITTRIGDQPVVMVRHTD 55 (146)
T ss_pred HHHHHHHHHHhhcCCEEEEEHHHC-----CCCCCEEEEEECCeeEEEEECCC
Confidence 345567778888999986542 33 13567777888888899998643
No 25
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=30.85 E-value=74 Score=20.49 Aligned_cols=27 Identities=4% Similarity=-0.021 Sum_probs=21.4
Q ss_pred cCcEEEEEeCCEEEEEEecCCCCCCCc
Q 033634 72 YGNFIYFRVGSLAILLFRGSAAPGSDD 98 (114)
Q Consensus 72 ~~~~i~F~i~~~~~LifKt~~~~~~~~ 98 (114)
++..+.++.++..|.+|+||.-.|+-.
T Consensus 29 p~~~f~aK~~~~tIt~Y~SGKV~FQG~ 55 (81)
T PF11858_consen 29 PYAVFQAKYNGVTITAYKSGKVVFQGK 55 (81)
T ss_dssp TTEEEEEEETTEEEEEETTSEEEEEST
T ss_pred CCEEEEEeCCCeEEEEEeCCeEEEECC
Confidence 555566789999999999998876543
No 26
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=30.16 E-value=39 Score=24.76 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhc----ccCCCceEEEEeCCcceeEE
Q 033634 38 TEIARFIKKEFD----KAYGTGWQCIVGTDFGSFVT 69 (114)
Q Consensus 38 ~diA~~IK~~lD----~kyG~~WHcIVG~~Fgs~vt 69 (114)
+++++++-..+| +++.+..-+|.|+|||+==|
T Consensus 29 ~~l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~GSS 64 (166)
T PRK14023 29 DRFHNYAFAHLRPEFASTVRPGDILVAGRNFGLGSS 64 (166)
T ss_pred HHHHhhhccCCChhhHhhcCCCCEEEccCcccCCcc
Confidence 556666555544 45556677788889996433
No 27
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.99 E-value=1.3e+02 Score=21.57 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcC----CC--------ChHHHHHHHHHHhc
Q 033634 11 TDMLETMQQDALDLAAKALDFFD----VT--------EPTEIARFIKKEFD 49 (114)
Q Consensus 11 sdM~~emq~~ai~~~~~a~~~~~----~e--------~~~diA~~IK~~lD 49 (114)
.+||++.++++++-..+-++.-. +| +++++|+.|+....
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 46999999999997776665422 11 35788888886543
No 28
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=29.83 E-value=59 Score=25.53 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=33.7
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCC-hHHH-HHHHHHHhcccCCCceEE
Q 033634 4 GKAVIGETDMLETMQQDALDLAAKALDFFDVTE-PTEI-ARFIKKEFDKAYGTGWQC 58 (114)
Q Consensus 4 ~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~-~~di-A~~IK~~lD~kyG~~WHc 58 (114)
..+.|..+|.+....++|.. ..|+..+ .+.+ .+.++++|++.-|+.|.+
T Consensus 128 ~~~~I~AtDId~~~L~~A~~------G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 128 FRVKILATDIDLSVLEKARA------GIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred CceEEEEEECCHHHHHHHhc------CCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 47899999999987665533 2355221 1333 567789999998887776
No 29
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=29.65 E-value=79 Score=26.85 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeC----CEEEEEEecCCC
Q 033634 38 TEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVG----SLAILLFRGSAA 93 (114)
Q Consensus 38 ~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~----~~~~LifKt~~~ 93 (114)
.++..+||..||..+|..| |-|+ =|.+|+-+....||.+. .+...+||....
T Consensus 9 Seln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~ 64 (440)
T COG1570 9 SELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR 64 (440)
T ss_pred HHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcCccc
Confidence 6789999999999999999 4555 14456444558999984 678889998766
No 30
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=29.10 E-value=37 Score=23.60 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=12.4
Q ss_pred cCCCceEEEEeCCcceeE
Q 033634 51 AYGTGWQCIVGTDFGSFV 68 (114)
Q Consensus 51 kyG~~WHcIVG~~Fgs~v 68 (114)
++|..+-+|.|+|||+==
T Consensus 45 ~~~~~~iiVaG~nFG~GS 62 (121)
T cd01579 45 KAAGPGFIVGGENYGQGS 62 (121)
T ss_pred ccCCCeEEEcCCcCCCCc
Confidence 345567778888999543
No 31
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.83 E-value=1.2e+02 Score=21.47 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhccc----CCC
Q 033634 38 TEIARFIKKEFDKA----YGT 54 (114)
Q Consensus 38 ~diA~~IK~~lD~k----yG~ 54 (114)
.+.|+.|+..|.++ ||+
T Consensus 95 ~e~A~eLr~~L~~kGvr~fG~ 115 (128)
T PF09868_consen 95 PEEAKELRSILVKKGVRSFGS 115 (128)
T ss_pred HHHHHHHHHHHHHhhHHHhCC
Confidence 78999999999998 665
No 32
>PRK06489 hypothetical protein; Provisional
Probab=27.70 E-value=40 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcccCC-CceEEEEeCCcceeEE
Q 033634 37 PTEIARFIKKEFDKAYG-TGWQCIVGTDFGSFVT 69 (114)
Q Consensus 37 ~~diA~~IK~~lD~kyG-~~WHcIVG~~Fgs~vt 69 (114)
+.++|+.+...+..+.| ..++++||-|+|+.+.
T Consensus 135 ~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vA 168 (360)
T PRK06489 135 YDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHA 168 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHH
Confidence 45677777666644444 4678899999997765
No 33
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=26.78 E-value=50 Score=22.34 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhc-------------ccCCCceEEEEeCCcc
Q 033634 37 PTEIARFIKKEFD-------------KAYGTGWQCIVGTDFG 65 (114)
Q Consensus 37 ~~diA~~IK~~lD-------------~kyG~~WHcIVG~~Fg 65 (114)
+-++|..|+++=+ --|-++=||++|+-|+
T Consensus 24 LydL~~eI~kETeFdillfS~igv~~GD~~~ss~~alG~~~~ 65 (100)
T PF10655_consen 24 LYDLANEIDKETEFDILLFSTIGVSNGDFISSSHCALGNPFG 65 (100)
T ss_pred HHHHHHHhcccceeeeeeeeeeccccCccccccchhhccHHH
Confidence 5678888987533 2344678899888665
No 34
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=26.02 E-value=1e+02 Score=18.62 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=20.9
Q ss_pred EeCCCCHHHHHHHHHHHHH-HhhhcCCCChHHHHHHHHHH
Q 033634 9 GETDMLETMQQDALDLAAK-ALDFFDVTEPTEIARFIKKE 47 (114)
Q Consensus 9 ~~sdM~~emq~~ai~~~~~-a~~~~~~e~~~diA~~IK~~ 47 (114)
+.+|+..+.-+++++..++ .+........+.+-+.|++.
T Consensus 35 i~aDVg~~~a~~i~~~ik~~~~~~~~~~~~~~v~~~l~~~ 74 (75)
T PF02881_consen 35 IEADVGVEVAEKIIENIKKKLIKKKGINPREEVKKALKEE 74 (75)
T ss_dssp HHTTTSHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHH
T ss_pred HHcCcCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Confidence 4567777777777777766 55422222123444444443
No 35
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=25.92 E-value=2.2e+02 Score=22.11 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=33.2
Q ss_pred eCCCCHHHHHHHHHHHHHH------------hhhcCCCChHHHHHHHHHHhcccCCCceEEEEe
Q 033634 10 ETDMLETMQQDALDLAAKA------------LDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVG 61 (114)
Q Consensus 10 ~sdM~~emq~~ai~~~~~a------------~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG 61 (114)
..+||++.+...|+.+++. -......+..+..+.+++.||. +.|++||=
T Consensus 94 ~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeA---GA~~ViiE 154 (237)
T TIGR03849 94 SMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEA---GADYVIIE 154 (237)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 4589999999999998854 1111112346778888888874 56666663
No 36
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.78 E-value=2.7e+02 Score=23.11 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeC--CcceeEEEccCcEEEEEeC----CEEEEEEecCCCC
Q 033634 38 TEIARFIKKEFDKAYGTGWQCIVGT--DFGSFVTHCYGNFIYFRVG----SLAILLFRGSAAP 94 (114)
Q Consensus 38 ~diA~~IK~~lD~kyG~~WHcIVG~--~Fgs~vthe~~~~i~F~i~----~~~~LifKt~~~~ 94 (114)
.++..+||..||..|+..| |.|+ ||-. | ..-.+||.+. .+...+|++....
T Consensus 3 sel~~~ik~~le~~~~~v~--V~GEisn~~~---~-~sGH~YFtLkD~~a~i~~vmf~~~~~~ 59 (432)
T TIGR00237 3 SELNAQIKALLEATFLQVW--IQGEISNFTQ---P-VSGHWYFTLKDENAQVRCVMFRGNNNR 59 (432)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEEecCCee---C-CCceEEEEEEcCCcEEEEEEEcChhhC
Confidence 5788999999999999888 5666 6542 3 4446899873 6789999987543
No 37
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=25.20 E-value=1e+02 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCceEEEEeCCcceeEEEccCcEEE
Q 033634 53 GTGWQCIVGTDFGSFVTHCYGNFIY 77 (114)
Q Consensus 53 G~~WHcIVG~~Fgs~vthe~~~~i~ 77 (114)
.+..||||...|||.+++-.+--++
T Consensus 586 ~grYQCVvtN~FGStysqk~KltV~ 610 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKLTVN 610 (873)
T ss_pred CceEEEEEecccCcchhheeEEEee
Confidence 4689999999999999876554433
No 38
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=62 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcc------cCCCce-EEEEeC-Ccc-------------eeEEEccC
Q 033634 38 TEIARFIKKEFDK------AYGTGW-QCIVGT-DFG-------------SFVTHCYG 73 (114)
Q Consensus 38 ~diA~~IK~~lD~------kyG~~W-HcIVG~-~Fg-------------s~vthe~~ 73 (114)
.+|++.|-++... .+++.| ||.||+ +|. +..||.++
T Consensus 226 ~nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt~e~i~~Ni~a~i~av~t~rp~ 282 (323)
T KOG1569|consen 226 RNIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMTSEQILANIQAVIAAVCTHRPK 282 (323)
T ss_pred cchHHHHHHhhCCcccccccccCceeeeeeeeecCCHHHHHHHHHHHHHHHHhcCCc
Confidence 5677777666554 457788 999999 876 45677776
No 39
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=25.05 E-value=80 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCc
Q 033634 38 TEIARFIKKEFDKAYGTGWQCIVGTDF 64 (114)
Q Consensus 38 ~diA~~IK~~lD~kyG~~WHcIVG~~F 64 (114)
...|+.|++.|.++||+...|.|..-|
T Consensus 2 ~~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 2 NSAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 467999999999999999999987743
No 40
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=25.03 E-value=59 Score=26.92 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.3
Q ss_pred CCceEEEEeCCcceeEEEc
Q 033634 53 GTGWQCIVGTDFGSFVTHC 71 (114)
Q Consensus 53 G~~WHcIVG~~Fgs~vthe 71 (114)
|+.||||+--.....||+.
T Consensus 277 ~GWWHvVlNle~TIAiTqN 295 (407)
T KOG2130|consen 277 SGWWHVVLNLEPTIAITQN 295 (407)
T ss_pred CCeEEEEeccCceeeeeec
Confidence 5689999988888888764
No 41
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=24.60 E-value=2.3e+02 Score=19.19 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEE
Q 033634 41 ARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFR 79 (114)
Q Consensus 41 A~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~ 79 (114)
+..+.+.|.++++..|++ |+.|+..--+..+..+.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 28 PEEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 456777788888888887 9999987776666665543
No 42
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=24.25 E-value=56 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=14.6
Q ss_pred HHHHHHHHhcccCCCceEE
Q 033634 40 IARFIKKEFDKAYGTGWQC 58 (114)
Q Consensus 40 iA~~IK~~lD~kyG~~WHc 58 (114)
+.+.+-+.+-+.||.+||-
T Consensus 98 ae~~~m~~l~~tYGKt~Ht 116 (171)
T PF06884_consen 98 AEKAEMEKLVKTYGKTWHT 116 (171)
T ss_pred HHHHHHHHHHhhhCCeEEe
Confidence 4566677788899999884
No 43
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=23.67 E-value=46 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=13.4
Q ss_pred CCCceEEEEeCCcceeEE
Q 033634 52 YGTGWQCIVGTDFGSFVT 69 (114)
Q Consensus 52 yG~~WHcIVG~~Fgs~vt 69 (114)
-|-.|-+|.|++||+==|
T Consensus 67 ~g~~~iIVaG~nyG~GSS 84 (149)
T cd01578 67 HGIKWVVIGDENYGEGSS 84 (149)
T ss_pred cCCCeEEEccCccCCCCc
Confidence 365799999999985433
No 44
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=23.21 E-value=46 Score=20.44 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=9.0
Q ss_pred HhcccCCC--ceEEEE
Q 033634 47 EFDKAYGT--GWQCIV 60 (114)
Q Consensus 47 ~lD~kyG~--~WHcIV 60 (114)
..|+..|+ +|-|||
T Consensus 54 d~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 54 DFERRGGGGAGAFCVI 69 (69)
T ss_pred CccccCCCCceEEEeC
Confidence 34555555 688886
No 45
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=22.91 E-value=91 Score=19.52 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCc
Q 033634 21 ALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDF 64 (114)
Q Consensus 21 ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~F 64 (114)
=++.|.+|+..++.. +..+.-.=+.|=+-||+.|--|=-.||
T Consensus 10 R~daA~dam~~lG~~--~~~v~~vl~~LL~lY~~nW~lIEed~Y 51 (65)
T PF10440_consen 10 RIDAALDAMRQLGFS--KKQVRPVLKNLLKLYDGNWELIEEDNY 51 (65)
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCchhhhcccH
Confidence 356788888888866 444433333444578888977654444
No 46
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=22.80 E-value=1.1e+02 Score=17.03 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHhhhcCCCChHHHHHHHH
Q 033634 23 DLAAKALDFFDVTEPTEIARFIK 45 (114)
Q Consensus 23 ~~~~~a~~~~~~e~~~diA~~IK 45 (114)
+...+|+.+|+..+.+.||+.+.
T Consensus 10 ~~l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 10 EKLLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHS
T ss_pred HHHHHHHHHhCCcHHHHHHHHcC
Confidence 35677888888765788988875
No 47
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=22.72 E-value=59 Score=26.31 Aligned_cols=34 Identities=32% Similarity=0.625 Sum_probs=27.1
Q ss_pred HHhcccCCCceEE-EEeCCcceeEEEccCcEEEEE
Q 033634 46 KEFDKAYGTGWQC-IVGTDFGSFVTHCYGNFIYFR 79 (114)
Q Consensus 46 ~~lD~kyG~~WHc-IVG~~Fgs~vthe~~~~i~F~ 79 (114)
..|..+||..=|- |||+-||+-++...+.|+|..
T Consensus 37 ~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL 71 (314)
T KOG2915|consen 37 GTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLL 71 (314)
T ss_pred ceeeccccccchhheecCCccceeeecCCcEEEEe
Confidence 4567889987565 999999999999888777743
No 48
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=22.67 E-value=2.8e+02 Score=19.46 Aligned_cols=45 Identities=16% Similarity=0.379 Sum_probs=32.3
Q ss_pred HHHHHHhcccCC-CceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecC
Q 033634 42 RFIKKEFDKAYG-TGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGS 91 (114)
Q Consensus 42 ~~IK~~lD~kyG-~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~ 91 (114)
+....++++-|. ..|+.+.-. .. -+++.++-+.+++..++|+|..
T Consensus 11 ~~~~~E~~~if~~~~W~~v~~~~el-----~~~g~~~~~~i~g~~iiv~r~~ 57 (150)
T cd03545 11 AYFDREQERIFRGKTWSYVGLEAEI-----PNAGDFKSTFVGDTPVVVTRAE 57 (150)
T ss_pred HHHHHHHHhhhCCCceEEEEEHHHC-----CCCCCEEEEEECCceEEEEECC
Confidence 456778888895 899998764 32 1346677778888888888853
No 49
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=22.67 E-value=60 Score=23.67 Aligned_cols=14 Identities=50% Similarity=0.451 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhcc
Q 033634 37 PTEIARFIKKEFDK 50 (114)
Q Consensus 37 ~~diA~~IK~~lD~ 50 (114)
.|+||..||+-||.
T Consensus 122 IK~IAsaIK~lLdA 135 (154)
T PF06840_consen 122 IKEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999999995
No 50
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=22.38 E-value=59 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=25.0
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEe
Q 033634 24 LAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVG 61 (114)
Q Consensus 24 ~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG 61 (114)
.....++.++.+ ++.+|+.|++.+.++|...+.-+||
T Consensus 138 ~I~~s~~~~P~~-lr~i~~~l~~~v~~kfp~~~~~~Vg 174 (323)
T cd05392 138 AIISSLDRFPPE-LREICHHIYEVVSEKFPDSALSAVG 174 (323)
T ss_pred HHHHhHHhCCHH-HHHHHHHHHHHHHHHCCCchHHHHH
Confidence 334444545543 7889999999999999875443333
No 51
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=22.15 E-value=74 Score=20.54 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=19.7
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhcccCCC
Q 033634 24 LAAKALDFFDVTEPTEIARFIKKEFDKAYGT 54 (114)
Q Consensus 24 ~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~ 54 (114)
.+..++...+ +.+.+|+.|+.-|..-||.
T Consensus 26 ~Iv~~v~~~~--~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 26 DIVQAVHEND--DPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp HHHHHHTT-S---HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHcc
Confidence 3444555444 4589999999999888874
No 52
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=22.15 E-value=1.4e+02 Score=15.63 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHh
Q 033634 16 TMQQDALDLAAKALDFFDVTEPTEIARFIKKEF 48 (114)
Q Consensus 16 emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~l 48 (114)
+.-+.++..+...++...++ ++|.+.|++.-
T Consensus 5 ~~C~~~v~~i~~~l~~~~t~--~~I~~~l~~~C 35 (39)
T PF05184_consen 5 DICKFVVKEIEKLLKNNKTE--EEIKKALEKAC 35 (39)
T ss_dssp HHHHHHHHHHHHHHHSTCHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCccH--HHHHHHHHHHH
Confidence 34567788888888755555 77777777643
No 53
>PF15571 Imm25: Immunity protein 25
Probab=21.92 E-value=58 Score=23.01 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhcccCCCceEEE
Q 033634 37 PTEIARFIKKEFDKAYGTGWQCI 59 (114)
Q Consensus 37 ~~diA~~IK~~lD~kyG~~WHcI 59 (114)
+.++...||+.+|..||..|+-|
T Consensus 17 fr~~r~~Ik~~~~~~~g~~~~~I 39 (124)
T PF15571_consen 17 FREIRNEIKELNDNLYGIEIESI 39 (124)
T ss_pred HHHHHHHHHHHHccccccchhhh
Confidence 46788899999999999988754
No 54
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.87 E-value=70 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHhcccCCCceEEE
Q 033634 35 TEPTEIARFIKKEFDKAYGTGWQCI 59 (114)
Q Consensus 35 e~~~diA~~IK~~lD~kyG~~WHcI 59 (114)
+..+++++.|++.|+.+ .|+++
T Consensus 33 ~~~~~~~~~l~kRl~~~---~~~~~ 54 (115)
T cd00197 33 VGPKEAVDAIKKRINNK---NPHVV 54 (115)
T ss_pred ccHHHHHHHHHHHhcCC---cHHHH
Confidence 34689999999999875 78764
No 55
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=21.57 E-value=93 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhcCCC---ChHHHHHHHHHHhcccCCCceE
Q 033634 20 DALDLAAKALDFFDVT---EPTEIARFIKKEFDKAYGTGWQ 57 (114)
Q Consensus 20 ~ai~~~~~a~~~~~~e---~~~diA~~IK~~lD~kyG~~WH 57 (114)
.++.-....+++++.- .....++.|...|-++|-++|.
T Consensus 7 ~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HWy 47 (108)
T smart00099 7 AAVNFITSLLRKHNKLSKRRVEIFAEKLTRLLKEKYKNHWY 47 (108)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455566666666532 2345688899999999988886
No 56
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=21.39 E-value=1.3e+02 Score=23.42 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHhcccCCCceEEEEeCCcceeE
Q 033634 36 EPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFV 68 (114)
Q Consensus 36 ~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~v 68 (114)
+...-|+.|++.|-+++|..=-|||..++|--.
T Consensus 123 DPd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~ 155 (243)
T TIGR01916 123 DPDASAEKIRRGLRELTGVDVGVIITDTNGRPF 155 (243)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEEEECCCCCcc
Confidence 356789999999999999999999999888643
No 57
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=21.31 E-value=95 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhcccC----CCceEEEEeCCcceeEEEc
Q 033634 37 PTEIARFIKKEFDKAY----GTGWQCIVGTDFGSFVTHC 71 (114)
Q Consensus 37 ~~diA~~IK~~lD~ky----G~~WHcIVG~~Fgs~vthe 71 (114)
.+++|+++-+.+|..| .+.=-+|.|+|||+==|.|
T Consensus 24 ~e~la~~~~e~~dp~f~~~v~~gdilVaG~nFG~GSSRE 62 (129)
T cd01674 24 PEKMAEVCMENYDSEFSTKTKQGDILVSGFNFGTGSSRE 62 (129)
T ss_pred HHHHHHhhcccCCchhhhcCCCCCEEEeCCccCCCCcHH
Confidence 4567777766666444 2232345556999654433
No 58
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=21.28 E-value=33 Score=23.17 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCHHHHHHHHH--HHHHHhhhcCCCChHHHHHHHHHHhcccCCC----ceEE
Q 033634 13 MLETMQQDALD--LAAKALDFFDVTEPTEIARFIKKEFDKAYGT----GWQC 58 (114)
Q Consensus 13 M~~emq~~ai~--~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~----~WHc 58 (114)
|.-+..+.+++ .++.+++....+=-+.=+..||..||-.||+ .|-|
T Consensus 3 ~~i~v~~~vlds~Larr~mk~~tg~C~~cGd~Rik~Ald~alggR~daCwkC 54 (102)
T COG4001 3 EFIRVLNRVLDSELARRLMKLMTGECRKCGDPRIKSALDHALGGRDDACWKC 54 (102)
T ss_pred hHHHHHHHHhccHHHHHHHHHhcccccccccHHHHHHHHHHHcCchhHHHHH
Confidence 33344444443 5777777554431133467899999999988 6877
No 59
>PF08594 UPF0300: Uncharacterised protein family (UPF0300); InterPro: IPR013903 This entry of proteins appear to be specific to Schizosaccharomyces pombe (Fission yeast).
Probab=21.24 E-value=2.9e+02 Score=21.28 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.8
Q ss_pred ceEEEEeCCcceeEEEccC
Q 033634 55 GWQCIVGTDFGSFVTHCYG 73 (114)
Q Consensus 55 ~WHcIVG~~Fgs~vthe~~ 73 (114)
.|-||+-++|-+++--+..
T Consensus 95 ~W~~I~~k~F~c~I~l~~~ 113 (215)
T PF08594_consen 95 SWIAICSKNFMCNIHLDQP 113 (215)
T ss_pred cEEEEecCcceEEEEecCC
Confidence 7999999999998865544
No 60
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=21.16 E-value=1.4e+02 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHhcccCCCceEEEEeCCcce
Q 033634 36 EPTEIARFIKKEFDKAYGTGWQCIVGTDFGS 66 (114)
Q Consensus 36 ~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs 66 (114)
+...-|+.|++.|.+++|..=-|||..+||-
T Consensus 124 DPd~SA~~ir~~l~~~~g~~v~VIItDt~gr 154 (245)
T PRK13293 124 NPDESAERIREGLEELTGKKVGVIITDTNGR 154 (245)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 4567899999999999999999999999983
No 61
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=21.16 E-value=43 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCC
Q 033634 19 QDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGT 54 (114)
Q Consensus 19 ~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~ 54 (114)
.-.++++..|+..+..- +. .+.|++..|++|..
T Consensus 115 ~vCl~ia~~a~~~~~~G--ks-~~eIR~~ID~kYk~ 147 (158)
T PF13798_consen 115 GVCLDIAVQAVQMYQEG--KS-PKEIRQYIDEKYKE 147 (158)
T ss_pred HHHHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHHh
Confidence 34567888888877643 33 67788888998864
No 62
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.04 E-value=1.2e+02 Score=23.28 Aligned_cols=33 Identities=9% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHH
Q 033634 13 MLETMQQDALDLAAKALDFFDVTEPTEIARFIKK 46 (114)
Q Consensus 13 M~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~ 46 (114)
+.+.||.. +-....+++.|++|.+.+++.+...
T Consensus 2 ~feq~qs~-~~e~l~ginryNPE~latLe~yVq~ 34 (217)
T KOG3252|consen 2 QFEQMQSN-VGELLVGINRYNPENLATLENYVQA 34 (217)
T ss_pred cchHHHHH-HHHHHHhcccCChhHHHHHHHHHHH
Confidence 34677877 7778889999999888888887763
No 63
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=20.88 E-value=3.1e+02 Score=21.27 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHHhcccCCCceEE
Q 033634 15 ETMQQDALDLAAKALDFFDV-TEPTEIARFIKKEFDKAYGTGWQC 58 (114)
Q Consensus 15 ~emq~~ai~~~~~a~~~~~~-e~~~diA~~IK~~lD~kyG~~WHc 58 (114)
++|++++++...+.++-.+. .+..++|++|+++|+ +.|-.++.
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~-~~g~~~~~ 49 (346)
T PRK00466 6 ELVKQKAKELLLDLLSIYTPSGNETNATKFFEKISN-ELNLKLEI 49 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 56777888888887764432 134789999999998 44655553
No 64
>PF12415 rpo132: Poxvirus DNA dependent RNA polymerase; InterPro: IPR024390 All three classes of poxvirus genes - early, intermediate and late - are transcribed by the viral RNA polymerase compex []. This complex is composed of nine distinct subunits which total more than 500kDa in mass. The two largest subunits (147 and 136kDa) are homologous to the largest subunits of eukaryotic and prokaryotic RNA polymerases and, like them, are thought to form a claw-shaped structure whose cleft is the site of template interaction and phosphodiester bond formation. While the smaller subunits of poxvirus RNA polymerase show much less similarity, if any, to the smaller subunits of the eukaryotic and prokaryotic enzymes, it is thought that they may play a similar role in interacting with transcription factors. The 132kDa subunit is the second largest subunit of the poxvirus DNA dependent RNA polymerase and shows structural similarity to the second-largest RNA polymerase subunits of eubacteria, archaebacteria, and eukaryotes.
Probab=20.49 E-value=1.7e+02 Score=15.98 Aligned_cols=10 Identities=20% Similarity=0.022 Sum_probs=7.1
Q ss_pred EeCCCCHHHH
Q 033634 9 GETDMLETMQ 18 (114)
Q Consensus 9 ~~sdM~~emq 18 (114)
++-|||.|.-
T Consensus 7 Lsydmp~ei~ 16 (33)
T PF12415_consen 7 LSYDMPPEII 16 (33)
T ss_pred hccCCCHHHH
Confidence 5678998743
No 65
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=20.49 E-value=64 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHhcccCCCceEEEEeCCcceeEE
Q 033634 36 EPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVT 69 (114)
Q Consensus 36 ~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vt 69 (114)
++.++++.|+..++++ ..+||.|+|+.+.
T Consensus 51 ~~~~~~~~~~~~~~~~-----~~lvG~S~Gg~~a 79 (245)
T TIGR01738 51 SLADAAEAIAAQAPDP-----AIWLGWSLGGLVA 79 (245)
T ss_pred CHHHHHHHHHHhCCCC-----eEEEEEcHHHHHH
Confidence 3678888888877632 4689999998775
Done!