Query 033634
Match_columns 114
No_of_seqs 122 out of 546
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 4.6E-43 1.6E-47 232.6 8.5 89 1-91 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 4.2E-41 1.4E-45 226.5 9.1 86 4-91 12-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 2.4E-40 8.1E-45 224.6 10.1 87 3-91 16-102 (102)
4 3e9v_A Protein BTG2; B-cell tr 65.8 2.9 0.0001 28.2 1.9 46 12-57 1-48 (120)
5 1eci_A Ectatomin; pore-forming 63.7 15 0.0005 19.5 4.8 33 14-50 4-36 (37)
6 1use_A VAsp, vasodilator-stimu 57.3 14 0.00049 20.8 3.4 34 15-52 10-43 (45)
7 2z15_A Protein TOB1; human TOB 48.0 5.2 0.00018 27.3 0.7 47 11-57 6-52 (130)
8 1wj7_A Hypothetical protein (R 39.4 28 0.00095 22.9 3.2 35 24-62 56-91 (104)
9 1qwg_A PSL synthase;, (2R)-pho 37.5 77 0.0026 23.8 5.8 49 10-61 108-168 (251)
10 3gzx_A Biphenyl dioxygenase su 34.6 92 0.0031 24.9 6.2 47 42-93 44-91 (457)
11 2bmo_A Oxygenase-alpha NBDO; n 32.1 1E+02 0.0035 24.1 6.0 45 44-93 25-70 (447)
12 2kzv_A Uncharacterized protein 31.0 16 0.00056 23.2 1.0 34 20-53 8-49 (92)
13 1eci_B Ectatomin; pore-forming 30.2 62 0.0021 16.7 4.1 22 25-50 13-34 (34)
14 3vca_A Ring-hydroxylating diox 29.3 1.2E+02 0.0043 23.7 6.1 47 42-93 30-77 (412)
15 2b1x_A Naphthalene dioxygenase 27.6 1.3E+02 0.0046 23.7 6.0 45 44-93 34-79 (470)
16 2oct_A Cystatin B; stefin, amy 27.6 81 0.0028 19.7 3.9 44 56-106 45-89 (98)
17 2b61_A Homoserine O-acetyltran 27.6 29 0.00098 25.0 1.9 35 36-70 135-169 (377)
18 1uli_A Biphenyl dioxygenase la 26.3 1.5E+02 0.005 23.4 6.0 45 43-92 43-88 (460)
19 3i1i_A Homoserine O-acetyltran 26.3 21 0.00072 25.4 1.0 35 36-70 128-162 (377)
20 3id6_A NOP5, PRE mRNA splicing 25.2 51 0.0018 24.9 3.0 40 10-51 222-261 (268)
21 2elk_A SPCC24B10.08C protein; 24.5 82 0.0028 17.6 3.2 22 24-45 19-40 (58)
22 3n0q_A Putative aromatic-ring 24.5 1.8E+02 0.006 22.8 6.1 47 42-93 28-75 (409)
23 2gbw_A Biphenyl 2,3-dioxygenas 24.5 1.7E+02 0.0057 23.0 6.0 44 44-92 26-70 (454)
24 3vp5_A Transcriptional regulat 24.0 1.5E+02 0.0051 19.3 5.0 33 11-43 7-41 (189)
25 3vba_A Isopropylmalate/citrama 22.7 35 0.0012 24.3 1.5 18 50-67 49-66 (176)
26 1xrk_A Bleomycin resistance pr 21.5 1.4E+02 0.0049 17.9 4.6 22 72-93 35-56 (124)
27 1x41_A Transcriptional adaptor 20.6 1.1E+02 0.0037 17.1 3.2 21 25-45 19-39 (60)
28 2hcu_A 3-isopropylmalate dehyd 20.4 45 0.0016 24.4 1.8 16 51-66 82-97 (213)
29 2pkp_A Homoaconitase small sub 20.1 41 0.0014 23.6 1.4 16 51-66 48-63 (170)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=4.6e-43 Score=232.63 Aligned_cols=89 Identities=49% Similarity=0.897 Sum_probs=85.7
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634 1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV 80 (114)
Q Consensus 1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i 80 (114)
|++.+++|+.+|||++||++|+++|.+|+++|+.+ ++||++||++||++|||+||||||++|||++||++++||||++
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~ 78 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI 78 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence 88999999999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEecC
Q 033634 81 GSLAILLFRGS 91 (114)
Q Consensus 81 ~~~~~LifKt~ 91 (114)
|+++||||||+
T Consensus 79 g~~~iLlfKtg 89 (89)
T 3rjs_A 79 GQVAVLLFKSG 89 (89)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEecC
Confidence 99999999996
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-41 Score=226.46 Aligned_cols=86 Identities=37% Similarity=0.806 Sum_probs=84.0
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCE
Q 033634 4 GKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSL 83 (114)
Q Consensus 4 ~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~~~ 83 (114)
++++|+.+|||++||++|+++|.+|+++|+++ ++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus 12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ 89 (97)
T 4ds1_A 12 STPIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL 89 (97)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence 67999999999999999999999999999977 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q 033634 84 AILLFRGS 91 (114)
Q Consensus 84 ~~LifKt~ 91 (114)
+||||||+
T Consensus 90 aiLlfKtg 97 (97)
T 4ds1_A 90 AFLVFKTA 97 (97)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999986
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=2.4e-40 Score=224.63 Aligned_cols=87 Identities=49% Similarity=0.877 Sum_probs=83.2
Q ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCC
Q 033634 3 EGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGS 82 (114)
Q Consensus 3 ~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~~ 82 (114)
.++++|+.+|||++||++|+++|.+|+++|+++ ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~e--kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~ 93 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ 93 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence 467899999999999999999999999999877 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q 033634 83 LAILLFRGS 91 (114)
Q Consensus 83 ~~~LifKt~ 91 (114)
++||||||+
T Consensus 94 ~aiLlfKt~ 102 (102)
T 1yo3_A 94 VAILLFKSG 102 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999985
No 4
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=65.84 E-value=2.9 Score=28.21 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHhhh--cCCCChHHHHHHHHHHhcccCCCceE
Q 033634 12 DMLETMQQDALDLAAKALDF--FDVTEPTEIARFIKKEFDKAYGTGWQ 57 (114)
Q Consensus 12 dM~~emq~~ai~~~~~a~~~--~~~e~~~diA~~IK~~lD~kyG~~WH 57 (114)
||-.|.+..+-=++.-+..+ .+.+..+..++.|...|-++|-++|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556544443344444333 22222456789999999999999998
No 5
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=63.70 E-value=15 Score=19.50 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcc
Q 033634 14 LETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDK 50 (114)
Q Consensus 14 ~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~ 50 (114)
|...-+.+.-....-.+++. .+||.+||+..|+
T Consensus 4 pkkiweticpt~~~~akkc~----g~iat~ik~~c~k 36 (37)
T 1eci_A 4 PKKIWETVCPTVEPWAKKCS----GDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHTBC----HHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchHHHHHHcc----chHHHHHHHHhcc
Confidence 34444455555555566664 7899999999876
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=57.28 E-value=14 Score=20.78 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccC
Q 033634 15 ETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAY 52 (114)
Q Consensus 15 ~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~ky 52 (114)
+.+++++++..+.-+++.+ .+|-..|+.+|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K----~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK----EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 4578899999999999887 569999999998763
No 7
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=47.99 E-value=5.2 Score=27.29 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceE
Q 033634 11 TDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQ 57 (114)
Q Consensus 11 sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WH 57 (114)
+.|-.|.+..+-=++.-...+.+.+..+..++.|...|-++|.++|.
T Consensus 6 ~~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 6 SGMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CCSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555544333223333323222222456789999999999999994
No 8
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.36 E-value=28 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhcccC-CCceEEEEeC
Q 033634 24 LAAKALDFFDVTEPTEIARFIKKEFDKAY-GTGWQCIVGT 62 (114)
Q Consensus 24 ~~~~a~~~~~~e~~~diA~~IK~~lD~ky-G~~WHcIVG~ 62 (114)
.|+.||..++.+ +++.|..-|+..- .+.|.++.+|
T Consensus 56 eAr~AL~~~ngD----l~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCNGD----VNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHTSC----HHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcCCC----HHHHHHHHHhCCCcCCceeeeccc
Confidence 488899888754 7777777777663 4679998876
No 9
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=37.50 E-value=77 Score=23.77 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=36.1
Q ss_pred eCCCCHHHHHHHHHHHHHH-hh---hcC--------CCChHHHHHHHHHHhcccCCCceEEEEe
Q 033634 10 ETDMLETMQQDALDLAAKA-LD---FFD--------VTEPTEIARFIKKEFDKAYGTGWQCIVG 61 (114)
Q Consensus 10 ~sdM~~emq~~ai~~~~~a-~~---~~~--------~e~~~diA~~IK~~lD~kyG~~WHcIVG 61 (114)
..+||++.+.++|+.+.+. +. ... ..+..+..+.+++.||. +.|.|||=
T Consensus 108 ~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiE 168 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIE 168 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 4689999999999998877 21 111 22357788999999998 67777764
No 10
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=34.58 E-value=92 Score=24.94 Aligned_cols=47 Identities=13% Similarity=0.405 Sum_probs=33.4
Q ss_pred HHHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCCC
Q 033634 42 RFIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSAA 93 (114)
Q Consensus 42 ~~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~~ 93 (114)
+....++++-|+..|++|.-. ... +++.++-+.+++..++|||..+.
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~dG 91 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQKDQ 91 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECCCC
Confidence 445678888999999998654 331 23456667888889999997543
No 11
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=32.06 E-value=1e+02 Score=24.13 Aligned_cols=45 Identities=11% Similarity=0.358 Sum_probs=31.9
Q ss_pred HHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCCC
Q 033634 44 IKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSAA 93 (114)
Q Consensus 44 IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~~ 93 (114)
...+++.-|...|++|.-. ... +++.++-+.+++..++|||..+.
T Consensus 25 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~G 70 (447)
T 2bmo_A 25 FQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQNDG 70 (447)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECCCC
Confidence 3567778889999997543 221 24567778889999999997543
No 12
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=30.96 E-value=16 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhcCCCC----hHHHHHHHHHH---hcc-cCC
Q 033634 20 DALDLAAKALDFFDVTE----PTEIARFIKKE---FDK-AYG 53 (114)
Q Consensus 20 ~ai~~~~~a~~~~~~e~----~~diA~~IK~~---lD~-kyG 53 (114)
++++...+|++....++ +..+-++|++. ||. .||
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccC
Confidence 45666666666655442 67888999885 775 455
No 13
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=30.19 E-value=62 Score=16.75 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHhcc
Q 033634 25 AAKALDFFDVTEPTEIARFIKKEFDK 50 (114)
Q Consensus 25 ~~~a~~~~~~e~~~diA~~IK~~lD~ 50 (114)
...-.+++. .+||.+||+..|+
T Consensus 13 ~~~~akkc~----g~iat~ik~~c~k 34 (34)
T 1eci_B 13 LKSMAKKCE----GSIATMIKKKCDK 34 (34)
T ss_dssp HHHHHTTBS----TTHHHHHHHHSCC
T ss_pred chHHHHhcc----ccHHHHHHHHhCC
Confidence 334445554 5699999998875
No 14
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=29.35 E-value=1.2e+02 Score=23.74 Aligned_cols=47 Identities=15% Similarity=0.393 Sum_probs=34.7
Q ss_pred HHHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCCC
Q 033634 42 RFIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSAA 93 (114)
Q Consensus 42 ~~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~~ 93 (114)
+....++++-|...|++|.-. ... +++.++-+.+++..++|||..+.
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~dG 77 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSRDG 77 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCCC
Confidence 455678888999999997654 331 24667778889999999997543
No 15
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=27.65 E-value=1.3e+02 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCCC
Q 033634 44 IKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSAA 93 (114)
Q Consensus 44 IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~~ 93 (114)
...+++.-|...|++|.-. .+. +++.++-+.+++..++|||..+.
T Consensus 34 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~~~G 79 (470)
T 2b1x_A 34 HDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDEGG 79 (470)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEcCCC
Confidence 3466677789999997543 331 23566777889999999997543
No 16
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*
Probab=27.56 E-value=81 Score=19.74 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=24.4
Q ss_pred eEEEEeCCcceeEEEccCcEEEEEeCCEEEEEEecCC-CCCCCchhhhhhhc
Q 033634 56 WQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSA-APGSDDDEANQFAK 106 (114)
Q Consensus 56 WHcIVG~~Fgs~vthe~~~~i~F~i~~~~~LifKt~~-~~~~~~~~~~~~~~ 106 (114)
=|||-|.||=..+.-..+.+ ..+-+|+..+ ...+..+++.|-+|
T Consensus 45 tQVVAG~NY~ikv~v~~~~~-------~h~~vy~~lp~~~~~~~l~~~q~~k 89 (98)
T 2oct_A 45 SQVVAGTNYFIKVHVGDEDF-------VHLRVFQSLPHENKSLTLSNYQTNK 89 (98)
T ss_dssp EEEEEEEEEEEEEECSTTCE-------EEEEEEEESSTTCCCEEEEEEEEEE
T ss_pred EEEeCCEEEEEEEEECCCcE-------EEEEEEecCCCCCCceEEEEEecCC
Confidence 36677776644444444433 3456777543 34555666666554
No 17
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=27.56 E-value=29 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEE
Q 033634 36 EPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTH 70 (114)
Q Consensus 36 ~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vth 70 (114)
+..++|+.|...++..-....+++||.|+|+.++.
T Consensus 135 ~~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia~ 169 (377)
T 2b61_A 135 VVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQAN 169 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcceeEEEEEChhHHHHH
Confidence 45788888888887654466777999999987763
No 18
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=26.34 E-value=1.5e+02 Score=23.44 Aligned_cols=45 Identities=16% Similarity=0.428 Sum_probs=31.5
Q ss_pred HHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCC
Q 033634 43 FIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSA 92 (114)
Q Consensus 43 ~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~ 92 (114)
....+++.-|...|++|.-. ... +++.++-+.+++..++|||..+
T Consensus 43 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~~~ 88 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQKN 88 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEcCC
Confidence 44577778899999997432 221 2355667788888999999754
No 19
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=26.32 E-value=21 Score=25.40 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEE
Q 033634 36 EPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTH 70 (114)
Q Consensus 36 ~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vth 70 (114)
...++|+.|...+|..-....+++||.|+|+.+.-
T Consensus 128 ~~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia~ 162 (377)
T 3i1i_A 128 TFLDVARMQCELIKDMGIARLHAVMGPSAGGMIAQ 162 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHHH
Confidence 45788888888887654455667999999987763
No 20
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=25.15 E-value=51 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=30.6
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhccc
Q 033634 10 ETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKA 51 (114)
Q Consensus 10 ~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~k 51 (114)
..||+++..+.|...|..+++.+..- +.+.+||+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R--~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIR--RNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 46888888888888888888766544 67899999888763
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=24.53 E-value=82 Score=17.64 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=16.4
Q ss_pred HHHHHhhhcCCCChHHHHHHHH
Q 033634 24 LAAKALDFFDVTEPTEIARFIK 45 (114)
Q Consensus 24 ~~~~a~~~~~~e~~~diA~~IK 45 (114)
...+++++|+..+..+||+++.
T Consensus 19 ~L~~~v~~~G~~~W~~IA~~~~ 40 (58)
T 2elk_A 19 LLIDACETLGLGNWADIADYVG 40 (58)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHC
T ss_pred HHHHHHHHHCcCCHHHHHHHHC
Confidence 3466778888666899998874
No 22
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=24.47 E-value=1.8e+02 Score=22.84 Aligned_cols=47 Identities=13% Similarity=0.482 Sum_probs=34.5
Q ss_pred HHHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCCC
Q 033634 42 RFIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSAA 93 (114)
Q Consensus 42 ~~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~~ 93 (114)
+....++++-|...|++|.-. ... +++.++-+.+++..++|||..+.
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~dG 75 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRGADN 75 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCCC
Confidence 455677888899999998654 331 24667778889999999997543
No 23
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=24.45 E-value=1.7e+02 Score=22.97 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEecCC
Q 033634 44 IKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFRGSA 92 (114)
Q Consensus 44 IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifKt~~ 92 (114)
...+++.-|...|++|.-. ... +++.++-+.+++..++|||..+
T Consensus 26 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~ 70 (454)
T 2gbw_A 26 YALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQSD 70 (454)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEcCC
Confidence 4567777888999997543 321 2456677788898999999754
No 24
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=24.01 E-value=1.5e+02 Score=19.25 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCC--ChHHHHHH
Q 033634 11 TDMLETMQQDALDLAAKALDFFDVT--EPTEIARF 43 (114)
Q Consensus 11 sdM~~emq~~ai~~~~~a~~~~~~e--~~~diA~~ 43 (114)
..|+++.++.|++.+.+.+.+.+-+ ..++||+.
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 3578899999999999999987743 36777755
No 25
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=22.66 E-value=35 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=13.1
Q ss_pred ccCCCceEEEEeCCccee
Q 033634 50 KAYGTGWQCIVGTDFGSF 67 (114)
Q Consensus 50 ~kyG~~WHcIVG~~Fgs~ 67 (114)
++|-+.+-+|.|+|||+=
T Consensus 49 ~~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 49 KKVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HHCCTTCEEEECTTBTBS
T ss_pred HhcCCCCEEEeCCCccCC
Confidence 345566888888899953
No 26
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A
Probab=21.47 E-value=1.4e+02 Score=17.93 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=15.4
Q ss_pred cCcEEEEEeCCEEEEEEecCCC
Q 033634 72 YGNFIYFRVGSLAILLFRGSAA 93 (114)
Q Consensus 72 ~~~~i~F~i~~~~~LifKt~~~ 93 (114)
...+.++..++..+.++..+.+
T Consensus 35 ~~~~~~~~~~~~~l~l~~~~~~ 56 (124)
T 1xrk_A 35 EDDFAGVVRDDVTLFISAVQDQ 56 (124)
T ss_dssp CSSEEEEEETTEEEEEEECSCT
T ss_pred CCCEEEEEECCEEEEEEcCCCC
Confidence 4456777888888888876543
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.65 E-value=1.1e+02 Score=17.13 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=15.4
Q ss_pred HHHHhhhcCCCChHHHHHHHH
Q 033634 25 AAKALDFFDVTEPTEIARFIK 45 (114)
Q Consensus 25 ~~~a~~~~~~e~~~diA~~IK 45 (114)
..+|+++|...+..+||++|.
T Consensus 19 L~~~v~~~G~~~W~~Ia~~~~ 39 (60)
T 1x41_A 19 LLEAVMDCGFGNWQDVANQMC 39 (60)
T ss_dssp HHHHHHHTCTTCHHHHHHHHT
T ss_pred HHHHHHHHCcCcHHHHHHHhC
Confidence 456677888556889998874
No 28
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=20.40 E-value=45 Score=24.36 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.2
Q ss_pred cCCCceEEEEeCCcce
Q 033634 51 AYGTGWQCIVGTDFGS 66 (114)
Q Consensus 51 kyG~~WHcIVG~~Fgs 66 (114)
+|.+..-+|+|+|||+
T Consensus 82 ~~~~~~IlvaG~NfGc 97 (213)
T 2hcu_A 82 EYREASILITGDNFGA 97 (213)
T ss_dssp GGTTCCEEEECSSBTC
T ss_pred hhcCCcEEEecCCCCC
Confidence 4667888899999995
No 29
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=20.07 E-value=41 Score=23.59 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.6
Q ss_pred cCCCceEEEEeCCcce
Q 033634 51 AYGTGWQCIVGTDFGS 66 (114)
Q Consensus 51 kyG~~WHcIVG~~Fgs 66 (114)
++.+.|-+|.|+|||+
T Consensus 48 ~~~~~~iivaG~nfG~ 63 (170)
T 2pkp_A 48 KVKEGDVIVAGENFGC 63 (170)
T ss_dssp HCCTTCEEEECTTBTB
T ss_pred hCCCCCEEEecCCCCC
Confidence 4556788899999985
Done!