BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033635
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
 pdb|4D93|B Chain B, Crystal Structure Of Tep1s
 pdb|4D93|C Chain C, Crystal Structure Of Tep1s
          Length = 1323

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 55   KKNSYFAIV--IETVCAAVLTVVMAQRYMETSKVM 87
            KK  Y+     IET   A+L+ VMA++Y++   VM
Sbjct: 1038 KKERYWGTTNQIETTAYALLSFVMAEKYLDGIPVM 1072


>pdb|2LOO|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14a
          From Noe Data
 pdb|2LOP|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14a
          Length = 108

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 64 IETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          +    A  L  +M  R+  + K+MPAG+V 
Sbjct: 64 VSLFTAFFLATIMGVRFKRSKKIMPAGLVA 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.134    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,957,969
Number of Sequences: 62578
Number of extensions: 40587
Number of successful extensions: 92
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)