Query 033635
Match_columns 114
No_of_seqs 107 out of 321
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 100.0 6.9E-32 1.5E-36 191.2 6.4 95 1-106 1-97 (110)
2 PF03647 Tmemb_14: Transmembra 99.9 2.3E-29 5E-34 174.0 1.2 93 4-106 1-93 (96)
3 COG5548 Small integral membran 99.9 5.2E-22 1.1E-26 138.3 5.7 83 6-94 6-88 (105)
4 PF07185 DUF1404: Protein of u 61.9 18 0.00039 27.6 4.6 100 12-113 32-132 (169)
5 PF12751 Vac7: Vacuolar segreg 52.1 9.2 0.0002 32.8 1.7 26 4-29 304-329 (387)
6 PF02656 DUF202: Domain of unk 51.9 57 0.0012 20.4 6.3 21 66-86 53-73 (73)
7 PF05283 MGC-24: Multi-glycosy 43.5 28 0.0006 27.0 3.0 27 27-53 159-185 (186)
8 PF07290 DUF1449: Protein of u 43.5 1.5E+02 0.0033 22.9 7.3 74 16-89 51-125 (202)
9 PF04156 IncA: IncA protein; 42.9 58 0.0012 23.9 4.6 21 7-27 11-31 (191)
10 PF02439 Adeno_E3_CR2: Adenovi 42.3 47 0.001 19.6 3.2 24 25-48 2-25 (38)
11 PRK03784 vtamin B12-transporte 41.0 1.3E+02 0.0027 25.0 6.7 54 23-76 54-109 (331)
12 PF04391 DUF533: Protein of un 40.4 67 0.0015 24.7 4.7 39 17-55 13-55 (188)
13 COG5336 Uncharacterized protei 37.3 1.6E+02 0.0035 21.3 5.9 43 31-79 52-94 (116)
14 PF12301 CD99L2: CD99 antigen 35.1 48 0.001 25.2 3.1 30 29-58 114-144 (169)
15 PF10315 DUF2416: Protein of u 34.8 41 0.00089 24.0 2.6 57 33-94 36-95 (108)
16 PF11286 DUF3087: Protein of u 34.7 1.2E+02 0.0025 23.2 5.1 35 55-90 45-79 (165)
17 PRK09777 fecD iron-dicitrate t 30.9 2.1E+02 0.0045 23.6 6.5 48 28-75 52-101 (318)
18 TIGR00145 FTR1 family protein. 30.9 2.9E+02 0.0063 22.4 8.6 70 12-81 18-95 (283)
19 PF09323 DUF1980: Domain of un 30.6 2.2E+02 0.0049 21.0 6.7 30 57-86 30-59 (182)
20 PRK11228 fecC iron-dicitrate t 30.5 2.3E+02 0.0051 23.1 6.7 45 28-72 52-98 (323)
21 PRK10441 iron-enterobactin tra 30.2 2.1E+02 0.0044 23.8 6.4 48 25-72 58-107 (335)
22 TIGR03869 F420-0_ABCperm propo 29.7 2.5E+02 0.0054 23.2 6.7 50 25-74 51-102 (325)
23 PRK09430 djlA Dna-J like membr 28.8 52 0.0011 26.3 2.5 26 15-41 7-32 (267)
24 PF09586 YfhO: Bacterial membr 28.7 2.3E+02 0.0049 25.5 6.8 72 15-93 102-175 (843)
25 PF01032 FecCD: FecCD transpor 26.8 1.9E+02 0.0042 23.4 5.6 32 24-55 39-70 (311)
26 PRK03557 zinc transporter ZitB 26.7 2.9E+02 0.0063 22.2 6.5 13 23-35 84-96 (312)
27 PF13572 DUF4134: Domain of un 26.4 2.2E+02 0.0049 19.7 6.1 37 19-58 36-72 (98)
28 COG4858 Uncharacterized membra 25.4 3.5E+02 0.0076 21.6 9.1 81 8-91 103-189 (226)
29 PF07226 DUF1422: Protein of u 25.3 1.8E+02 0.004 21.1 4.6 64 40-108 43-112 (117)
30 PRK10255 PTS system N-acetyl g 25.1 2.4E+02 0.0052 25.8 6.3 17 68-84 103-119 (648)
31 PRK10440 iron-enterobactin tra 24.5 3E+02 0.0064 22.8 6.3 42 28-69 60-103 (330)
32 PRK13859 type IV secretion sys 23.6 28 0.00061 22.0 0.1 11 102-112 31-41 (55)
33 PF05513 TraA: TraA; InterPro 23.5 1E+02 0.0022 22.4 3.0 26 16-42 86-111 (119)
34 PF02038 ATP1G1_PLM_MAT8: ATP1 23.4 1.2E+02 0.0026 18.8 2.9 18 32-49 16-33 (50)
35 PRK11056 hypothetical protein; 23.3 2.4E+02 0.0051 20.6 4.8 65 40-109 43-113 (120)
36 PF02308 MgtC: MgtC family; I 22.8 2.9E+02 0.0062 19.6 6.8 18 31-48 58-75 (134)
37 COG4872 Predicted membrane pro 22.7 2.5E+02 0.0054 24.2 5.6 64 28-94 48-112 (394)
38 PF13194 DUF4010: Domain of un 22.6 1.5E+02 0.0033 22.9 4.1 10 30-39 27-36 (211)
39 TIGR00985 3a0801s04tom mitocho 22.5 1.6E+02 0.0035 21.9 4.0 18 42-59 19-36 (148)
40 PF00746 Gram_pos_anchor: Gram 22.2 29 0.00064 19.4 0.0 19 8-26 21-39 (39)
41 PRK09777 fecD iron-dicitrate t 22.1 4.5E+02 0.0097 21.6 7.7 59 7-65 233-303 (318)
42 PF09990 DUF2231: Predicted me 22.0 2.5E+02 0.0054 18.6 5.6 23 30-52 8-30 (104)
43 PF03729 DUF308: Short repeat 21.3 1.9E+02 0.0042 17.1 7.3 62 11-73 3-67 (72)
44 PF12670 DUF3792: Protein of u 21.3 2.9E+02 0.0062 19.1 5.6 34 60-93 41-74 (116)
45 COG0672 FTR1 High-affinity Fe2 21.3 5.1E+02 0.011 21.9 8.0 38 12-52 154-195 (383)
46 PRK03784 vtamin B12-transporte 20.9 4.9E+02 0.011 21.6 8.2 61 7-67 243-315 (331)
47 PF11780 DUF3318: Protein of u 20.1 1.7E+02 0.0036 21.6 3.6 21 65-85 105-125 (146)
48 PRK10907 intramembrane serine 20.0 4.7E+02 0.01 21.1 8.2 43 9-55 177-219 (276)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=99.97 E-value=6.9e-32 Score=191.17 Aligned_cols=95 Identities=43% Similarity=0.639 Sum_probs=85.8
Q ss_pred CccceehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHH-HHHHHHHHHHH
Q 033635 1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK-NSYFAIVIETV-CAAVLTVVMAQ 78 (114)
Q Consensus 1 ~~Dfc~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~-~~~~g~~l~~~-~S~~L~~~mg~ 78 (114)
|||+|++++|++|++.||+|||.||||+|||+||+.+|++ +||.+++.++|++ +.. +++. +|++|+.+|+.
T Consensus 1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~----~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSL----VALGGTSAALLGVMGQ 73 (110)
T ss_pred CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCch----hHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999985 5666676777766 543 4566 79999999999
Q ss_pred HHHhhCCcccchhhccccccchhhhhhc
Q 033635 79 RYMETSKVMPAGIVCPHDRVLSVQNCDR 106 (114)
Q Consensus 79 R~~kt~K~mPaGlva~~~~~~s~~~~~~ 106 (114)
||.+|||+||+|+++. +|+.|.++
T Consensus 74 R~~~s~K~mPaglva~----~s~~m~~~ 97 (110)
T KOG4267|consen 74 RFYRSRKIMPAGLVAG----ISLLMTCF 97 (110)
T ss_pred hhhccCCccchHHHHH----HHHHHHHH
Confidence 9999999999999999 99999887
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.95 E-value=2.3e-29 Score=174.05 Aligned_cols=93 Identities=47% Similarity=0.727 Sum_probs=84.2
Q ss_pred ceehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033635 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET 83 (114)
Q Consensus 4 fc~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt 83 (114)
||++++|++++++||++||+||||+|||++|+++|++++.+++++. +|+++++++++.+|++|+.+|++|+.||
T Consensus 1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~------~~~~~~~~~~l~~s~~L~~~m~~R~~~t 74 (96)
T PF03647_consen 1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL------TNQKWGSELALAISAVLAGVMGYRYIKT 74 (96)
T ss_dssp HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh------ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999999999873 4667888999999999999999999999
Q ss_pred CCcccchhhccccccchhhhhhc
Q 033635 84 SKVMPAGIVCPHDRVLSVQNCDR 106 (114)
Q Consensus 84 ~K~mPaGlva~~~~~~s~~~~~~ 106 (114)
+|+||+|++++ +|..|..+
T Consensus 75 ~k~~Pagl~~~----~s~~~~~~ 93 (96)
T PF03647_consen 75 RKFMPAGLMAL----LSGAMLAF 93 (96)
T ss_dssp SSSCCCHHHHH----HHHHHHHH
T ss_pred CCCccHHHHHH----HHHHHHHH
Confidence 99999999999 99998765
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=99.86 E-value=5.2e-22 Score=138.29 Aligned_cols=83 Identities=35% Similarity=0.600 Sum_probs=78.3
Q ss_pred ehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033635 6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSK 85 (114)
Q Consensus 6 ~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~K 85 (114)
-.+.++.|..+||+|||.+|+|++||++|+.+|+.+.+++|+.++ ++.+|++.++..|++|....+.|++||||
T Consensus 6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRK 79 (105)
T COG5548 6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILATVVSAALLVFFALRLVRSRK 79 (105)
T ss_pred HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehHHHHHHHHHHhcchhccccCC
Confidence 368899999999999999999999999999999999999999864 66789999999999999999999999999
Q ss_pred cccchhhcc
Q 033635 86 VMPAGIVCP 94 (114)
Q Consensus 86 ~mPaGlva~ 94 (114)
|||++++++
T Consensus 80 pvP~~Lt~l 88 (105)
T COG5548 80 PVPAGLTTL 88 (105)
T ss_pred CcchHHHHH
Confidence 999999987
No 4
>PF07185 DUF1404: Protein of unknown function (DUF1404); InterPro: IPR009844 This family consists of several archaeal proteins of around 180 residues in length. Members of this family seem to be found exclusively in Sulfolobus tokodaii and Sulfolobus solfataricus. The function of this family is unknown.
Probab=61.88 E-value=18 Score=27.64 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHhhhhhhhhh-cCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCcccch
Q 033635 12 LILIGGGIVGFAK-KGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAG 90 (114)
Q Consensus 12 ~Ll~~GGi~GYvk-~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~K~mPaG 90 (114)
++...|+++||.. |++..+++=|...-..--.=....+-. ....-+.-.++++.++.+|.+.-.++..+.-|..==+
T Consensus 32 ~L~~~g~llgy~~~k~~~~~~i~g~~~~v~WhlP~~F~l~a--~~~~~Rii~elSl~lgGiL~Gss~~~m~~~~Ki~Lf~ 109 (169)
T PF07185_consen 32 ALFWGGFLLGYKLFKGKIIFLILGIIPAVFWHLPYFFDLSA--SSLWYRIIDELSLFLGGILIGSSIPSMSFVFKITLFA 109 (169)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4678899999987 777777775544333210000000000 0011245567788888999988888888887754444
Q ss_pred hhccccccchhhhhhccccCCCC
Q 033635 91 IVCPHDRVLSVQNCDRWQPYSSQ 113 (114)
Q Consensus 91 lva~~~~~~s~~~~~~~~~~~~~ 113 (114)
+-..-|-.+|+....-.+.||++
T Consensus 110 lwM~gDT~lsi~liig~p~ysn~ 132 (169)
T PF07185_consen 110 LWMIGDTVLSIILIIGSPYYSNP 132 (169)
T ss_pred HHHHHHHHHHHHHHHcCccccCC
Confidence 44445888888888777777643
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=52.06 E-value=9.2 Score=32.77 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.3
Q ss_pred ceehHHHHHHHHhhhhhhhhhcCChh
Q 033635 4 FCFTIPYGLILIGGGIVGFAKKGSTA 29 (114)
Q Consensus 4 fc~~~~yg~Ll~~GGi~GYvk~gS~~ 29 (114)
+|+.+.+-+||.+||++||+.+-++|
T Consensus 304 ~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 304 SCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 68888888899999999999877665
No 6
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=51.90 E-value=57 Score=20.39 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCc
Q 033635 66 TVCAAVLTVVMAQRYMETSKV 86 (114)
Q Consensus 66 ~~~S~~L~~~mg~R~~kt~K~ 86 (114)
.+++.+....-..||.+.+|+
T Consensus 53 ~~~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 53 IVLGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 445666666667799888774
No 7
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=43.53 E-value=28 Score=26.96 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=18.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhh
Q 033635 27 STASLAGGVGTGLLLVLAGYLSLKAFE 53 (114)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~l~~~~~~ 53 (114)
+-.|.|.|+++-+.++...|..+|.+|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 347888888877766666666666554
No 8
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=43.51 E-value=1.5e+02 Score=22.95 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=40.0
Q ss_pred hhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh-CCcccc
Q 033635 16 GGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET-SKVMPA 89 (114)
Q Consensus 16 ~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt-~K~mPa 89 (114)
.+++++|..-|-+|-||-=+.+=..+..+||........-....+-..+.+.++.+++..+.+..-+- .|++|.
T Consensus 51 ~~~~L~wL~vGkvPlLI~L~l~l~~F~l~G~~lq~~~~~~~~~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~ 125 (202)
T PF07290_consen 51 FTQILSWLNVGKVPLLIWLVLLLSSFGLIGYLLQYVAISLFGGPLPAWLAAPVALFLSLFFTRYLGRPLARILPK 125 (202)
T ss_pred hHhHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 35677888888888887644433345566776644433321122222234455555655555544443 346665
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.86 E-value=58 Score=23.90 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhhhhhhhhcCC
Q 033635 7 TIPYGLILIGGGIVGFAKKGS 27 (114)
Q Consensus 7 ~~~yg~Ll~~GGi~GYvk~gS 27 (114)
.++-|++++++|+.+-+..++
T Consensus 11 ~iilgilli~~gI~~Lv~~~~ 31 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFIS 31 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777665553
No 10
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=42.31 E-value=47 Score=19.58 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.8
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHH
Q 033635 25 KGSTASLAGGVGTGLLLVLAGYLS 48 (114)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~l~ 48 (114)
.+|+.|.|+|++.|.+++..-...
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 468999999999999877655543
No 11
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=41.04 E-value=1.3e+02 Score=25.03 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=36.5
Q ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHHHHH
Q 033635 23 AKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK--KNSYFAIVIETVCAAVLTVVM 76 (114)
Q Consensus 23 vk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~--~~~~~g~~l~~~~S~~L~~~m 76 (114)
+..--.|=+++.+..|+.+..+|+..+...||| +....|..-.+....++...+
T Consensus 54 i~~~RlPRil~a~l~G~~La~sG~llQ~l~rNpLA~P~iLGissGA~l~~~l~i~~ 109 (331)
T PRK03784 54 VWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLL 109 (331)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHHH
Confidence 334456789999999999999999998888886 233455555444444444433
No 12
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=40.41 E-value=67 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=21.5
Q ss_pred hhhhhhhhcCCh----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033635 17 GGIVGFAKKGST----ASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (114)
Q Consensus 17 GGi~GYvk~gS~----~SLiaG~~~G~ll~~ag~l~~~~~~~~ 55 (114)
||++|-+..+.+ ..=+.+.+..+++...+|-.++.|++.
T Consensus 13 ggl~g~LlG~k~~r~~~g~a~~~Gg~AalG~lA~~ayq~~q~~ 55 (188)
T PF04391_consen 13 GGLLGMLLGGKKGRKMGGGALKYGGLAALGGLAYKAYQNWQQN 55 (188)
T ss_pred HHHHHHHhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777754433 333334444455556666666666543
No 13
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.27 E-value=1.6e+02 Score=21.32 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 033635 31 LAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQR 79 (114)
Q Consensus 31 LiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R 79 (114)
||+|+..|+. .||+.=+.. + .++|+..+.+.+-......-..|
T Consensus 52 fIsGilVGa~---iG~llD~~a--g-TsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 52 FISGILVGAG---IGWLLDKFA--G-TSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHH---HHHHHHHhc--C-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 7899999985 467653321 2 33566665555544444444443
No 14
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=35.09 E-value=48 Score=25.22 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHhhhcCCh
Q 033635 29 ASLAGGVGTGLLLVLAGY-LSLKAFEKKKNS 58 (114)
Q Consensus 29 ~SLiaG~~~G~ll~~ag~-l~~~~~~~~~~~ 58 (114)
+-+|+|++++++.++.|. -++-.||+.+++
T Consensus 114 ~g~IaGIvsav~valvGAvsSyiaYqkKKlC 144 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSSYIAYQKKKLC 144 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 556777776666554443 233335555554
No 15
>PF10315 DUF2416: Protein of unknown function (DUF2416); InterPro: IPR019419 This entry represents conserved proteins with unknown function and is restricted to fungi.
Probab=34.75 E-value=41 Score=24.00 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhC---Ccccchhhcc
Q 033635 33 GGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETS---KVMPAGIVCP 94 (114)
Q Consensus 33 aG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~---K~mPaGlva~ 94 (114)
.-+.||.+.+..+|.++. .|..-|-....+=|.+-..+-++|-+|+. |+.|-++..+
T Consensus 36 ~~llFg~a~~lg~ymi~d-----GD~~NGsGf~~AWS~lYLivngr~siksl~~gr~~PL~Ls~~ 95 (108)
T PF10315_consen 36 SCLLFGAAFALGGYMIYD-----GDLENGSGFVTAWSTLYLIVNGRKSIKSLRRGRVWPLALSGL 95 (108)
T ss_pred HhHHHHHHHHhhhheeec-----CCccccchHHHHHHHHHHHHcChhhhHHhccCCchHHHHHHH
Confidence 456677887788888742 23334555667778888889999999986 7888877655
No 16
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.68 E-value=1.2e+02 Score=23.22 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=22.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhCCcccch
Q 033635 55 KKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAG 90 (114)
Q Consensus 55 ~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~K~mPaG 90 (114)
++++..+..++.+++++++..-.. ..|++-+|-..
T Consensus 45 ~~~nf~~NllGVil~~~~~~~~l~-~~k~~p~m~Ev 79 (165)
T PF11286_consen 45 SGGNFHWNLLGVILGLLLTSALLR-QLKTHPFMTEV 79 (165)
T ss_pred CCCceeeeHHHHHHHHHHHHHHHH-HHccChHHHHH
Confidence 445566677777766666655554 78888776543
No 17
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=30.89 E-value=2.1e+02 Score=23.57 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHHHH
Q 033635 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK--KNSYFAIVIETVCAAVLTVV 75 (114)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~l~~~~~~~~--~~~~~g~~l~~~~S~~L~~~ 75 (114)
.|=+++++..|+.+..+|...+...||| +.+.+|..-.+....++...
T Consensus 52 lPR~l~a~l~G~~LavsG~~lQ~l~rNpLA~P~iLGissGA~l~~~l~~~ 101 (318)
T PRK09777 52 LPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALL 101 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHH
Confidence 4778899999999999999998888886 23345555555444444443
No 18
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=30.88 E-value=2.9e+02 Score=22.42 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHhhhhhhhhhcCC----hhhhHHHHHHHHHHHH-HHHHHHHHhhh-c--CChhHHHHHHHHHHHHHHHHHHHHHH
Q 033635 12 LILIGGGIVGFAKKGS----TASLAGGVGTGLLLVL-AGYLSLKAFEK-K--KNSYFAIVIETVCAAVLTVVMAQRYM 81 (114)
Q Consensus 12 ~Ll~~GGi~GYvk~gS----~~SLiaG~~~G~ll~~-ag~l~~~~~~~-~--~~~~~g~~l~~~~S~~L~~~mg~R~~ 81 (114)
+++.+|-++.|.||.. ++.+-.|++.|.+... .|......+.. + .+..........+++++...|+.-..
T Consensus 18 A~LIV~illa~L~k~~~~~~~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~ 95 (283)
T TIGR00145 18 AALVVSVLLSYLKRAQRTRLRGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWML 95 (283)
T ss_pred HHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999998554 4567777777776552 33333322222 1 11333333334445555555554443
No 19
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=30.64 E-value=2.2e+02 Score=21.01 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 033635 57 NSYFAIVIETVCAAVLTVVMAQRYMETSKV 86 (114)
Q Consensus 57 ~~~~g~~l~~~~S~~L~~~mg~R~~kt~K~ 86 (114)
+..+....+.++..+|+.+...|..+.++-
T Consensus 30 ~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 30 RYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344556666777777777777777776543
No 20
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=30.49 E-value=2.3e+02 Score=23.14 Aligned_cols=45 Identities=24% Similarity=0.097 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHH
Q 033635 28 TASLAGGVGTGLLLVLAGYLSLKAFEKKK--NSYFAIVIETVCAAVL 72 (114)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~l~~~~~~~~~--~~~~g~~l~~~~S~~L 72 (114)
.|=+++++..|+.+..+|...+...|||= ....|..-.+....++
T Consensus 52 lPR~l~a~l~G~~La~sG~~lQ~l~rNpLa~P~ilGissGA~l~~~~ 98 (323)
T PRK11228 52 LPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMAL 98 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHhhHHHHHHHHHHH
Confidence 46688999999999999999988888862 2345554444444443
No 21
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=30.24 E-value=2.1e+02 Score=23.78 Aligned_cols=48 Identities=21% Similarity=0.141 Sum_probs=33.0
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHH
Q 033635 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK--NSYFAIVIETVCAAVL 72 (114)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~--~~~~g~~l~~~~S~~L 72 (114)
.--.|-+++++..|+.+..+|...+...|||= ....|..-.+....++
T Consensus 58 ~~RLPR~l~ailvG~~LavaG~llQ~l~rNpLA~P~ilGissGA~l~~v~ 107 (335)
T PRK10441 58 DARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVL 107 (335)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHhHHHHHHHH
Confidence 33457789999999999999999988888862 2344544444433333
No 22
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=29.67 E-value=2.5e+02 Score=23.19 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=33.9
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHHH
Q 033635 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK--KNSYFAIVIETVCAAVLTV 74 (114)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~--~~~~~g~~l~~~~S~~L~~ 74 (114)
.--.|=+++++..|+.+..+|...+...||| +...+|..-.+....++..
T Consensus 51 ~~RlPRil~a~lvG~~La~sG~i~Q~l~rNpLa~P~iLGissGA~l~~~l~~ 102 (325)
T TIGR03869 51 DLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVL 102 (325)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3345778999999999999999988888886 2334555544433334433
No 23
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.76 E-value=52 Score=26.28 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=19.6
Q ss_pred HhhhhhhhhhcCChhhhHHHHHHHHHH
Q 033635 15 IGGGIVGFAKKGSTASLAGGVGTGLLL 41 (114)
Q Consensus 15 ~~GGi~GYvk~gS~~SLiaG~~~G~ll 41 (114)
.+||++||.- +.-+..+.|+.+|-++
T Consensus 7 i~g~~~G~~~-~g~~Ga~~G~~~Gh~~ 32 (267)
T PRK09430 7 ILGFAFGFLF-GGFFGALLGLLIGHMF 32 (267)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHhHH
Confidence 6899999998 4577777777777643
No 24
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=28.71 E-value=2.3e+02 Score=25.51 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=43.0
Q ss_pred HhhhhhhhhhcCChhhh--HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhh
Q 033635 15 IGGGIVGFAKKGSTASL--AGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIV 92 (114)
Q Consensus 15 ~~GGi~GYvk~gS~~SL--iaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~K~mPaGlv 92 (114)
.+|-.+-+.-++...+. .+-++.+.+++.+|+..... .+..+ +-..+=.-|...-.-|+.+.||+.+=-++
T Consensus 102 lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~----~~~~f---ld~~i~lPL~llgie~~~~~~k~~~~~~~ 174 (843)
T PF09586_consen 102 LAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYS----FNIMF---LDAMILLPLLLLGIERLLKEKKWWLFIIS 174 (843)
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHh----hhHHH---HHHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 34444444444444444 66667778888899987532 23333 23344455666667899999998664443
Q ss_pred c
Q 033635 93 C 93 (114)
Q Consensus 93 a 93 (114)
.
T Consensus 175 ~ 175 (843)
T PF09586_consen 175 L 175 (843)
T ss_pred H
Confidence 3
No 25
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=26.77 E-value=1.9e+02 Score=23.37 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=25.6
Q ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033635 24 KKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (114)
Q Consensus 24 k~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~ 55 (114)
..--.|-.++.+..|+.+..+|+..+...|||
T Consensus 39 ~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNp 70 (311)
T PF01032_consen 39 WDLRLPRILAAILVGAALALSGALLQTLTRNP 70 (311)
T ss_dssp CCTCHHHHHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 34456888899999999999999988888876
No 26
>PRK03557 zinc transporter ZitB; Provisional
Probab=26.73 E-value=2.9e+02 Score=22.18 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=5.1
Q ss_pred hhcCChhhhHHHH
Q 033635 23 AKKGSTASLAGGV 35 (114)
Q Consensus 23 vk~gS~~SLiaG~ 35 (114)
-|.-...+++.|+
T Consensus 84 ~r~E~l~al~~~~ 96 (312)
T PRK03557 84 LRLTTLAAFVNAI 96 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 27
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=26.42 E-value=2.2e+02 Score=19.66 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=24.8
Q ss_pred hhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q 033635 19 IVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNS 58 (114)
Q Consensus 19 i~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~ 58 (114)
+..|+....+-...-|.+.|. +.+...++.|+++++.
T Consensus 36 v~sy~~~~~~l~yaI~aVvgl---IGai~VY~k~~~Gd~d 72 (98)
T PF13572_consen 36 VTSYFDPVTKLMYAIGAVVGL---IGAIRVYIKWNNGDQD 72 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCCc
Confidence 345555666666666666666 5677888889887643
No 28
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=3.5e+02 Score=21.57 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhhhhhhhcCCh----hh-hHHHHHHHHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHHHHHHHHHH
Q 033635 8 IPYGLILIGGGIVGFAKKGST----AS-LAGGVGTGLLLVLAGYLSLKAFEK-KKNSYFAIVIETVCAAVLTVVMAQRYM 81 (114)
Q Consensus 8 ~~yg~Ll~~GGi~GYvk~gS~----~S-LiaG~~~G~ll~~ag~l~~~~~~~-~~~~~~g~~l~~~~S~~L~~~mg~R~~ 81 (114)
+.-|++..+-|+..|+.+.-. .+ ++.|++-|.++...-|..+|..-| ...+.++-.+.+.+.+.+.+.... +
T Consensus 103 l~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~--i 180 (226)
T COG4858 103 LFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVM--I 180 (226)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHH--H
Confidence 345677778899999988743 22 334555555555444555543332 223344444444444444444443 3
Q ss_pred hhCCcccchh
Q 033635 82 ETSKVMPAGI 91 (114)
Q Consensus 82 kt~K~mPaGl 91 (114)
-|. +.|+-+
T Consensus 181 ~t~-~lPtsl 189 (226)
T COG4858 181 ATV-FLPTSL 189 (226)
T ss_pred HHh-hCCCcC
Confidence 332 566554
No 29
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=25.30 E-value=1.8e+02 Score=21.05 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh------CCcccchhhccccccchhhhhhccc
Q 033635 40 LLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET------SKVMPAGIVCPHDRVLSVQNCDRWQ 108 (114)
Q Consensus 40 ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt------~K~mPaGlva~~~~~~s~~~~~~~~ 108 (114)
++..+.|..+|.|.+...+. +...-+..+.++......-+.|. .+|+|.-++.+ +-+-..-|++
T Consensus 43 aLvLavy~LyQ~Yl~~~m~e-g~P~~a~acFflG~f~ySA~vraqyPeiGSNFfp~il~l~----L~~Wi~~kl~ 112 (117)
T PF07226_consen 43 ALVLAVYCLYQRYLNHPMPE-GTPKLALACFFLGLFGYSAFVRAQYPEIGSNFFPSILCLI----LVFWIGYKLG 112 (117)
T ss_pred HHHHHHHHHHHHHhcCCCCC-CChHHHHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHH----HHHHHHHHHh
Confidence 34456788888887743321 11122333445555555555554 36888888877 7666665554
No 30
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=25.06 E-value=2.4e+02 Score=25.77 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhC
Q 033635 68 CAAVLTVVMAQRYMETS 84 (114)
Q Consensus 68 ~S~~L~~~mg~R~~kt~ 84 (114)
+..++......||.+.+
T Consensus 103 i~G~i~a~l~nkf~~~k 119 (648)
T PRK10255 103 ITGLVGGAAYNRWSDIK 119 (648)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 44555566666776654
No 31
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=24.48 E-value=3e+02 Score=22.82 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHH
Q 033635 28 TASLAGGVGTGLLLVLAGYLSLKAFEKKK--NSYFAIVIETVCA 69 (114)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~l~~~~~~~~~--~~~~g~~l~~~~S 69 (114)
.|=+++.+..|+.+..+|...+...|||= ....|..-++...
T Consensus 60 lPRil~a~l~G~~LalsG~llQ~l~rNpLa~P~iLGissGA~lg 103 (330)
T PRK10440 60 LPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSG 103 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcHhhHHHHHHHH
Confidence 46688999999999999999888888762 2345554443333
No 32
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=23.55 E-value=28 Score=22.00 Aligned_cols=11 Identities=55% Similarity=0.975 Sum_probs=8.9
Q ss_pred hhhhccccCCC
Q 033635 102 QNCDRWQPYSS 112 (114)
Q Consensus 102 ~~~~~~~~~~~ 112 (114)
+++.||||-.|
T Consensus 31 LNVgrWqptps 41 (55)
T PRK13859 31 LNVGRWQPTPS 41 (55)
T ss_pred cccccccCChh
Confidence 68899999765
No 33
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=23.47 E-value=1e+02 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=16.7
Q ss_pred hhhhhhhhhcCChhhhHHHHHHHHHHH
Q 033635 16 GGGIVGFAKKGSTASLAGGVGTGLLLV 42 (114)
Q Consensus 16 ~GGi~GYvk~gS~~SLiaG~~~G~ll~ 42 (114)
++|++.|+|+++ |-.+.|+..+.++.
T Consensus 86 i~~~v~y~~TkN-~~~~~Gf~i~iIft 111 (119)
T PF05513_consen 86 IVGVVMYFKTKN-PMVFGGFAIVIIFT 111 (119)
T ss_pred HHHHHHHHhccC-hHHhhhhHHhHhHH
Confidence 566677777777 44566666666543
No 34
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.43 E-value=1.2e+02 Score=18.84 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033635 32 AGGVGTGLLLVLAGYLSL 49 (114)
Q Consensus 32 iaG~~~G~ll~~ag~l~~ 49 (114)
+.|+++++++.+.|.++.
T Consensus 16 igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 568888888888887653
No 35
>PRK11056 hypothetical protein; Provisional
Probab=23.28 E-value=2.4e+02 Score=20.57 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh------CCcccchhhccccccchhhhhhcccc
Q 033635 40 LLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET------SKVMPAGIVCPHDRVLSVQNCDRWQP 109 (114)
Q Consensus 40 ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt------~K~mPaGlva~~~~~~s~~~~~~~~~ 109 (114)
++..+.|..+|.|.+...+. +...-+..+.++......-+.|. .+|+|.-++.+ +-+-..-|+.-
T Consensus 43 aLvLavycLyQ~Yl~~~m~e-g~P~~a~acFflG~f~ySA~vraeyPeiGSNF~p~il~~~----L~~Wi~~kl~~ 113 (120)
T PRK11056 43 ALVLAVYCLHQRYLNRPMPE-GLPGLAAACFFLGVFLYSAFVRAEYPEIGSNFFPAVLSVI----LVFWIGRKLRN 113 (120)
T ss_pred HHHHHHHHHHHHHhcCCCCC-CChHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHH----HHHHHHHHHhc
Confidence 34456788888887743322 11122233444444444455554 46888888887 76666666543
No 36
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=22.77 E-value=2.9e+02 Score=19.62 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033635 31 LAGGVGTGLLLVLAGYLS 48 (114)
Q Consensus 31 LiaG~~~G~ll~~ag~l~ 48 (114)
+.++++.|..++.+++..
T Consensus 58 v~~~~v~gigfl~~g~i~ 75 (134)
T PF02308_consen 58 VAAGIVSGIGFLGAGAIL 75 (134)
T ss_pred HHHHHHHHHHHHHHhHHh
Confidence 456666666665555543
No 37
>COG4872 Predicted membrane protein [Function unknown]
Probab=22.70 E-value=2.5e+02 Score=24.22 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhcc
Q 033635 28 TASLAGGVGTGLLLVLAGYLSLKAFEK-KKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCP 94 (114)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~l~~~~~~~-~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~K~mPaGlva~ 94 (114)
..+-++|+.+|+.... ..--+|++ |+..+.....++....-+.+.-..|=-+++|+.|+.+..+
T Consensus 48 i~atigglLlgagvi~---fVAANW~~iprlvkv~llf~li~gvy~gG~~awreqq~~~~lgeAL~il 112 (394)
T COG4872 48 IAATIGGLLLGAGVIT---FVAANWFSIPRLVKVILLFSLIFGVYIGGFYAWREQQSKRFLGEALLIL 112 (394)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHhhcccchhhHHHHH
Confidence 3455566666554321 12224555 4444554444444444444444455556677888777654
No 38
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=22.58 E-value=1.5e+02 Score=22.86 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q 033635 30 SLAGGVGTGL 39 (114)
Q Consensus 30 SLiaG~~~G~ 39 (114)
.+..|+++..
T Consensus 27 g~~GGlvSST 36 (211)
T PF13194_consen 27 GLLGGLVSST 36 (211)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 39
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=22.55 E-value=1.6e+02 Score=21.95 Aligned_cols=18 Identities=11% Similarity=0.390 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhcCChh
Q 033635 42 VLAGYLSLKAFEKKKNSY 59 (114)
Q Consensus 42 ~~ag~l~~~~~~~~~~~~ 59 (114)
++.||.+|-.++...++.
T Consensus 19 ~flgYciYFD~KRR~dPd 36 (148)
T TIGR00985 19 AFLGYAIYFDYKRRNDPD 36 (148)
T ss_pred HHHHHHHhhhhhhccCHH
Confidence 367888887777665543
No 40
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=22.18 E-value=29 Score=19.37 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhhcC
Q 033635 8 IPYGLILIGGGIVGFAKKG 26 (114)
Q Consensus 8 ~~yg~Ll~~GGi~GYvk~g 26 (114)
...|+++++++.+.|.|++
T Consensus 21 ~~~G~l~~~~~~~~~~krr 39 (39)
T PF00746_consen 21 TILGALLLLGGGLLLVKRR 39 (39)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHheecC
Confidence 3455566666666666653
No 41
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=22.15 E-value=4.5e+02 Score=21.62 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhhhhhhh------------hcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHH
Q 033635 7 TIPYGLILIGGGIVGFA------------KKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65 (114)
Q Consensus 7 ~~~yg~Ll~~GGi~GYv------------k~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~ 65 (114)
.+.=+.-++.-|.+||+ +++.+.-+......|+.++..+-...|.-..|.+-+.+...+
T Consensus 233 ~ll~a~~vs~vG~I~FvGLi~Phiar~l~g~~~~~~l~~s~l~Ga~lll~aD~i~r~l~~p~elPvGivta 303 (318)
T PRK09777 233 VALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTA 303 (318)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 34445667777888775 344555566666666666666666555443344434444433
No 42
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=22.03 E-value=2.5e+02 Score=18.64 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 033635 30 SLAGGVGTGLLLVLAGYLSLKAF 52 (114)
Q Consensus 30 SLiaG~~~G~ll~~ag~l~~~~~ 52 (114)
-++.|.+++..-..+|.......
T Consensus 8 ll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 8 LLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 46677777777777777765444
No 43
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.30 E-value=1.9e+02 Score=17.06 Aligned_cols=62 Identities=21% Similarity=0.440 Sum_probs=33.8
Q ss_pred HHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHH-HHhhhcCC--hhHHHHHHHHHHHHHH
Q 033635 11 GLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSL-KAFEKKKN--SYFAIVIETVCAAVLT 73 (114)
Q Consensus 11 g~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~-~~~~~~~~--~~~g~~l~~~~S~~L~ 73 (114)
|.+...-|++-..........+. ..+|..+...|.... +.++++++ .+.+..+....+.++.
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~~~~-~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~G 67 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLAALA-IILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLG 67 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 56666777777777666655554 667777776666444 33332222 3444444444444433
No 44
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=21.26 E-value=2.9e+02 Score=19.07 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhc
Q 033635 60 FAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93 (114)
Q Consensus 60 ~g~~l~~~~S~~L~~~mg~R~~kt~K~mPaGlva 93 (114)
+.......+|........-|-.++|.+.--+++.
T Consensus 41 ~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~G 74 (116)
T PF12670_consen 41 WLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVG 74 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 4444555677777777788888887776544443
No 45
>COG0672 FTR1 High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]
Probab=21.26 E-value=5.1e+02 Score=21.91 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHhhhhhhhhhc---CChhh-hHHHHHHHHHHHHHHHHHHHHh
Q 033635 12 LILIGGGIVGFAKK---GSTAS-LAGGVGTGLLLVLAGYLSLKAF 52 (114)
Q Consensus 12 ~Ll~~GGi~GYvk~---gS~~S-LiaG~~~G~ll~~ag~l~~~~~ 52 (114)
+++.+++++-|.+| .+.|. -++|++.+.+ .|++.++..
T Consensus 154 avL~vaai~~~~~k~~~~~~~~~a~~Gl~~a~~---lg~~i~~~~ 195 (383)
T COG0672 154 AVLFVAAILAYLVKGHTSAIPLVAVAGLAVALV---LGFLIYWGG 195 (383)
T ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHHHHH---HHHHHHHHH
Confidence 46788999999995 33333 5567666664 355555433
No 46
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=20.86 E-value=4.9e+02 Score=21.56 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhhhhhhh------------hcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 033635 7 TIPYGLILIGGGIVGFA------------KKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETV 67 (114)
Q Consensus 7 ~~~yg~Ll~~GGi~GYv------------k~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~ 67 (114)
.+.=|..++.-|.+||+ .++.+.-+..-...|++++..+-..-|.-..|.+-+.+...++.
T Consensus 243 ~ll~a~~va~vG~I~FVGLiaPhiar~l~g~~~~~~l~~s~l~Ga~lll~aD~i~r~i~~p~eiPvGiitali 315 (331)
T PRK03784 243 GWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATL 315 (331)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHH
Confidence 34456677788888886 33444557777788888888888776654445554555554444
No 47
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=20.15 E-value=1.7e+02 Score=21.64 Aligned_cols=21 Identities=19% Similarity=0.049 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q 033635 65 ETVCAAVLTVVMAQRYMETSK 85 (114)
Q Consensus 65 ~~~~S~~L~~~mg~R~~kt~K 85 (114)
-.+++..|++.-++|..+..|
T Consensus 105 k~~la~Gla~~~~~riwq~~~ 125 (146)
T PF11780_consen 105 KWGLAGGLAAWAAYRIWQQNR 125 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 344556666777777776655
No 48
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=20.03 E-value=4.7e+02 Score=21.06 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033635 9 PYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (114)
Q Consensus 9 ~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~ 55 (114)
.|-+-..+|++.-|...++ ..|..+|+++...||......++|
T Consensus 177 l~l~s~i~~~~~~~~~~~~----~~gGaSGvVygL~g~~~~~~~~~p 219 (276)
T PRK10907 177 ITLISALLSGWVQSKFSGP----WFGGLSGVVYALMGYVWLRGERDP 219 (276)
T ss_pred HHHHHHHHHHHHHHHHccc----hhhHHHHHHHHHHHHHHHHhcccc
Confidence 3434444556666665542 256788999888888766544443
Done!