Query 033635
Match_columns 114
No_of_seqs 107 out of 321
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.9 6E-29 2.1E-33 175.0 0.0 92 5-107 12-103 (108)
2 2los_A Transmembrane protein 1 99.9 7E-28 2.4E-32 172.5 0.0 93 4-107 20-112 (121)
3 2ks1_B Epidermal growth factor 27.5 67 0.0023 18.4 3.1 16 26-41 8-23 (44)
4 2l2t_A Receptor tyrosine-prote 22.5 1.2E+02 0.0041 17.4 4.1 14 27-40 8-21 (44)
5 2jp3_A FXYD domain-containing 19.0 1E+02 0.0034 19.4 2.9 18 32-49 19-36 (67)
6 2jo1_A Phospholemman; FXYD1, N 18.4 1E+02 0.0035 19.6 2.9 18 32-49 18-35 (72)
7 2zxe_G FXYD10, phospholemman-l 18.0 1.1E+02 0.0036 19.6 2.9 18 32-49 21-38 (74)
8 2qi9_A Vitamin B12 import syst 17.8 3.2E+02 0.011 21.1 6.3 29 27-55 56-84 (326)
9 2jwa_A Receptor tyrosine-prote 16.7 1.6E+02 0.0055 16.9 3.2 15 26-40 8-22 (44)
10 4g1u_A Hemin transport system 14.4 3.1E+02 0.011 21.7 5.5 29 27-55 78-106 (357)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.90 E-value=6e-29 Score=174.96 Aligned_cols=92 Identities=27% Similarity=0.468 Sum_probs=83.1
Q ss_pred eehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033635 5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETS 84 (114)
Q Consensus 5 c~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~ 84 (114)
+++++|++++++||++||+|+||+|||+||+.+|+++.+++| +.|+|++ ++++++++|++|+++|++||.|||
T Consensus 12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~~~~---~~~~~~~----~~~l~l~~S~~L~~~m~~R~~~t~ 84 (108)
T 2loo_A 12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAY---RVSNDKR----DVKVSLFTAFFLATIMGVRFKRSK 84 (108)
Confidence 489999999999999999999999999999999998755554 4455542 888999999999999999999999
Q ss_pred Ccccchhhccccccchhhhhhcc
Q 033635 85 KVMPAGIVCPHDRVLSVQNCDRW 107 (114)
Q Consensus 85 K~mPaGlva~~~~~~s~~~~~~~ 107 (114)
|+||+|++++ +|..|++|.
T Consensus 85 K~mPaGl~a~----lS~~m~~~y 103 (108)
T 2loo_A 85 KIMPAGLVAG----LSLMMILRL 103 (108)
Confidence 9999999999 999999874
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.88 E-value=7e-28 Score=172.52 Aligned_cols=93 Identities=29% Similarity=0.504 Sum_probs=82.9
Q ss_pred ceehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033635 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET 83 (114)
Q Consensus 4 fc~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt 83 (114)
-+++++||+|+++||++||+|+||+|||+||+.+|+++.+++| +.|+|+++ .++++++|++|+++|+.||.||
T Consensus 20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a~---~~~~~~~~----~~l~l~~S~~L~~~mg~R~~~t 92 (121)
T 2los_A 20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAY---QLSQDPRN----VWVFLATSGTLAGIMGMRFYHS 92 (121)
Confidence 3689999999999999999999999999999999998766555 45666543 4678899999999999999999
Q ss_pred CCcccchhhccccccchhhhhhcc
Q 033635 84 SKVMPAGIVCPHDRVLSVQNCDRW 107 (114)
Q Consensus 84 ~K~mPaGlva~~~~~~s~~~~~~~ 107 (114)
+|+||+|++++ +|++|++|.
T Consensus 93 ~K~mPaGlva~----lS~~m~~~~ 112 (121)
T 2los_A 93 GKFMPAGLIAG----ASLLMVAKV 112 (121)
Confidence 99999999999 999999885
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.48 E-value=67 Score=18.40 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=8.5
Q ss_pred CChhhhHHHHHHHHHH
Q 033635 26 GSTASLAGGVGTGLLL 41 (114)
Q Consensus 26 gS~~SLiaG~~~G~ll 41 (114)
.++++.++|++.|.+.
T Consensus 8 s~~~~IA~gVVgGv~~ 23 (44)
T 2ks1_B 8 PKIPSIATGMVGALLL 23 (44)
T ss_dssp SCSSSSTHHHHHHHHH
T ss_pred CCcceEEeehhHHHHH
Confidence 3455655565555543
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.48 E-value=1.2e+02 Score=17.38 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=6.2
Q ss_pred ChhhhHHHHHHHHH
Q 033635 27 STASLAGGVGTGLL 40 (114)
Q Consensus 27 S~~SLiaG~~~G~l 40 (114)
.+++.++|++-|.+
T Consensus 8 ~~~aIA~gVVgGv~ 21 (44)
T 2l2t_A 8 RTPLIAAGVIGGLF 21 (44)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHH
Confidence 34454444444443
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=18.96 E-value=1e+02 Score=19.40 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033635 32 AGGVGTGLLLVLAGYLSL 49 (114)
Q Consensus 32 iaG~~~G~ll~~ag~l~~ 49 (114)
+.|+++++++.+.|.++.
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 468888888877777654
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=18.42 E-value=1e+02 Score=19.60 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033635 32 AGGVGTGLLLVLAGYLSL 49 (114)
Q Consensus 32 iaG~~~G~ll~~ag~l~~ 49 (114)
+.|+++++++.+.|.+++
T Consensus 18 iGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 467888888777776553
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.00 E-value=1.1e+02 Score=19.64 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033635 32 AGGVGTGLLLVLAGYLSL 49 (114)
Q Consensus 32 iaG~~~G~ll~~ag~l~~ 49 (114)
+.|+++++++.+.|.++.
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 568899999988888765
No 8
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Probab=17.79 E-value=3.2e+02 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=21.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033635 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (114)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~l~~~~~~~~ 55 (114)
-.|-+++++..|+.+..+|...+...+||
T Consensus 56 RlPR~l~a~lvG~~La~sG~~~Q~l~rNp 84 (326)
T 2qi9_A 56 RLPRTLAVLLVGAALAISGAVMQALFENP 84 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34667788888888888888876666665
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.67 E-value=1.6e+02 Score=16.87 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=8.8
Q ss_pred CChhhhHHHHHHHHH
Q 033635 26 GSTASLAGGVGTGLL 40 (114)
Q Consensus 26 gS~~SLiaG~~~G~l 40 (114)
.|....||+.+.|.+
T Consensus 8 ~~~~~~Ia~~vVGvl 22 (44)
T 2jwa_A 8 ASPLTSIISAVVGIL 22 (44)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHH
Confidence 455555666666644
No 10
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=14.41 E-value=3.1e+02 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=23.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033635 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (114)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~l~~~~~~~~ 55 (114)
-.|=.++++..|+.+..+|...+...|||
T Consensus 78 RlPR~l~a~lvGaaLavsG~~~Q~~~rNP 106 (357)
T 4g1u_A 78 RLPRVLLAVVVGCALAVSGTIMQGLFRNP 106 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34678889999999999999988777776
Done!