Query 033635
Match_columns 114
No_of_seqs 107 out of 321
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 07:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033635.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033635hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 37.0 28 0.002 25.4 5.4 28 28-55 57-84 (324)
2 d1v54b2 f.17.2.1 (B:1-90) Mito 20.3 21 0.0015 21.4 1.5 26 2-27 24-49 (90)
3 d1x61a1 g.39.1.3 (A:8-34) Thyr 8.6 37 0.0027 16.3 0.1 12 89-101 13-24 (27)
4 d1lwha1 b.71.1.1 (A:392-441) 4 7.1 58 0.0042 17.7 0.5 8 105-112 40-47 (50)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.1 77 0.0056 19.1 1.2 21 2-22 35-55 (107)
6 d1v54c_ f.25.1.1 (C:) Mitochon 6.2 3.2E+02 0.024 18.5 4.4 36 8-43 18-53 (259)
7 d1rh6a_ a.6.1.7 (A:) Excisiona 5.7 1.1E+02 0.0082 16.9 1.3 15 77-91 21-35 (55)
8 d1zupa1 c.55.3.11 (A:1-301) Hy 4.8 46 0.0033 24.7 -1.2 17 17-33 170-186 (301)
9 d1v6ga2 g.39.1.3 (A:42-81) Act 4.8 94 0.0069 16.2 0.5 7 84-90 7-13 (40)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 4.4 1.4E+02 0.01 17.4 1.2 22 2-23 29-50 (100)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=37.03 E-value=28 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033635 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (114)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~l~~~~~~~~ 55 (114)
.|-.++++..|+.+..+|+..+...|||
T Consensus 57 lPR~l~a~l~Ga~La~sG~~lQ~~~rNp 84 (324)
T d1l7va_ 57 LPRTLAVLLVGAALAISGAVMQALFENP 84 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999998888886
No 2
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.31 E-value=21 Score=21.42 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.3
Q ss_pred ccceehHHHHHHHHhhhhhhhhhcCC
Q 033635 2 HDFCFTIPYGLILIGGGIVGFAKKGS 27 (114)
Q Consensus 2 ~Dfc~~~~yg~Ll~~GGi~GYvk~gS 27 (114)
||+.+.+...++..+..++.+...+.
T Consensus 24 Hd~~m~i~~~I~~~V~~~~~~~~~~~ 49 (90)
T d1v54b2 24 HDHTLMIVFLISSLVLYIISLMLTTK 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88887777777777776666665544
No 3
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=37 Score=16.25 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=8.4
Q ss_pred chhhccccccchh
Q 033635 89 AGIVCPHDRVLSV 101 (114)
Q Consensus 89 aGlva~~~~~~s~ 101 (114)
+|++++ ||+.-+
T Consensus 13 agvval-drvfhv 24 (27)
T d1x61a1 13 AGVVAL-DRVFHV 24 (27)
T ss_dssp CCEECS-SSEECT
T ss_pred cceEEE-eeeEEe
Confidence 577777 887654
No 4
>d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}
Probab=7.13 E-value=58 Score=17.71 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=6.1
Q ss_pred hccccCCC
Q 033635 105 DRWQPYSS 112 (114)
Q Consensus 105 ~~~~~~~~ 112 (114)
.|.|||+.
T Consensus 40 v~~~py~t 47 (50)
T d1lwha1 40 VKMKPYKT 47 (50)
T ss_dssp EECCTTCE
T ss_pred EEecccee
Confidence 58888874
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.12 E-value=77 Score=19.11 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=11.4
Q ss_pred ccceehHHHHHHHHhhhhhhh
Q 033635 2 HDFCFTIPYGLILIGGGIVGF 22 (114)
Q Consensus 2 ~Dfc~~~~yg~Ll~~GGi~GY 22 (114)
||+-+.+...+++.+.|++-|
T Consensus 35 h~~v~~i~~~I~~~V~~~~~~ 55 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLLLI 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.17 E-value=3.2e+02 Score=18.50 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHH
Q 033635 8 IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVL 43 (114)
Q Consensus 8 ~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ 43 (114)
...+++...-|...|...++...++.|+..-...+.
T Consensus 18 ~s~~~~~~~~g~~~~~~~~~~~~~~~gl~~~~~~~~ 53 (259)
T d1v54c_ 18 GALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMY 53 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 556777788888889998998888888775554433
No 7
>d1rh6a_ a.6.1.7 (A:) Excisionase Xis {Bacteriophage lambda [TaxId: 10710]}
Probab=5.72 E-value=1.1e+02 Score=16.89 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=12.8
Q ss_pred HHHHHhhCCcccchh
Q 033635 77 AQRYMETSKVMPAGI 91 (114)
Q Consensus 77 g~R~~kt~K~mPaGl 91 (114)
..|+.|.+++.|+-+
T Consensus 21 L~~~ak~g~I~P~p~ 35 (55)
T d1rh6a_ 21 VRRWVRESRIFPPPV 35 (55)
T ss_dssp HHHHHHTTCEESCCE
T ss_pred HHHHHHcCcccCCch
Confidence 579999999999864
No 8
>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga maritima [TaxId: 2336]}
Probab=4.82 E-value=46 Score=24.70 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=12.5
Q ss_pred hhhhhhhhcCChhhhHH
Q 033635 17 GGIVGFAKKGSTASLAG 33 (114)
Q Consensus 17 GGi~GYvk~gS~~SLia 33 (114)
||.+||+|+-.+..|-.
T Consensus 170 ~~~vGyVKt~~~~yL~~ 186 (301)
T d1zupa1 170 VGPIGLVKNIGVTELSK 186 (301)
T ss_dssp TBCEEEECCCSBCCSCH
T ss_pred CCceeEEEecccccCCH
Confidence 67788888887766654
No 9
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.82 E-value=94 Score=16.20 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=5.4
Q ss_pred CCcccch
Q 033635 84 SKVMPAG 90 (114)
Q Consensus 84 ~K~mPaG 90 (114)
|+++|+|
T Consensus 7 r~pFP~G 13 (40)
T d1v6ga2 7 RLPFPPG 13 (40)
T ss_dssp CCCCCSS
T ss_pred CCCCCCC
Confidence 6788876
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.41 E-value=1.4e+02 Score=17.41 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred ccceehHHHHHHHHhhhhhhhh
Q 033635 2 HDFCFTIPYGLILIGGGIVGFA 23 (114)
Q Consensus 2 ~Dfc~~~~yg~Ll~~GGi~GYv 23 (114)
||+-+.+....++.+.+++-|+
T Consensus 29 ~~~v~~i~~~I~~~V~~~l~~~ 50 (100)
T d3dtub2 29 DGFILVIIAAITIFVTLLILYA 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!