BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033637
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYB1|MED31_ARATH Mediator of RNA polymerase II transcription subunit 31
OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1
Length = 196
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Query: 1 MAASKD-NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
MA+ ++ ++AS+ PS PK YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1 MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60
Query: 60 AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANK
Sbjct: 61 AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANK 108
>sp|Q54NI7|MED31_DICDI Putative mediator of RNA polymerase II transcription subunit 31
OS=Dictyostelium discoideum GN=med31 PE=3 SV=1
Length = 176
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+ YL YLQYW++PEY KFI+YP LYFL
Sbjct: 55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFL 114
Query: 90 ELLQNANFRNAMAH 103
+LLQ FR + H
Sbjct: 115 DLLQEERFRQELNH 128
>sp|Q9USH1|MED31_SCHPO Mediator of RNA polymerase II transcription subunit 31
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med31 PE=3 SV=1
Length = 139
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 67/81 (82%), Gaps = 1/81 (1%)
Query: 22 KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 81
K PDD + RF +ELEFVQ L+NP Y+++LAQ++YFEDEAF+ YL+Y++YW+ PEY+KFI+
Sbjct: 9 KVPDD-KSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFII 67
Query: 82 YPHCLYFLELLQNANFRNAMA 102
YP CL+ L LL+N FRN ++
Sbjct: 68 YPTCLHMLTLLKNPQFRNDIS 88
>sp|Q8IH24|MED31_DROME Mediator of RNA polymerase II transcription subunit 31
OS=Drosophila melanogaster GN=MED31 PE=1 SV=2
Length = 204
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 5/85 (5%)
Query: 28 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 87
++R+ +ELEFVQCL+NP Y+++LAQ +F+D++FI YLKYLQYW+ P+Y K++MYP CLY
Sbjct: 19 KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLY 78
Query: 88 FLELLQNANFRNAMAHPANKVRLCC 112
FL+LLQ +FR + + CC
Sbjct: 79 FLDLLQYEHFRREIVNSQ-----CC 98
>sp|Q6DH26|MED31_DANRE Mediator of RNA polymerase II transcription subunit 31 OS=Danio
rerio GN=med31 PE=2 SV=2
Length = 136
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 60/83 (72%)
Query: 20 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKF 79
V + + RQRF LELEFVQCLANP Y+++LAQ Y ++ F+ YLKYL YW+ PEY KF
Sbjct: 4 VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKF 63
Query: 80 IMYPHCLYFLELLQNANFRNAMA 102
+ YPHCL+ LELLQ +FR +
Sbjct: 64 LKYPHCLHMLELLQYEHFRKELV 86
>sp|Q9CXU1|MED31_MOUSE Mediator of RNA polymerase II transcription subunit 31 OS=Mus
musculus GN=Med31 PE=1 SV=2
Length = 131
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 60/82 (73%)
Query: 23 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMY 82
D R RF LELEFVQCLANP Y+++LAQ YF+D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69
Query: 83 PHCLYFLELLQNANFRNAMAHP 104
P CL+ LELLQ +FR + +
Sbjct: 70 PQCLHMLELLQYEHFRKELVNA 91
>sp|A0JNN3|MED31_BOVIN Mediator of RNA polymerase II transcription subunit 31 OS=Bos
taurus GN=MED31 PE=2 SV=1
Length = 131
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 60/82 (73%)
Query: 23 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMY 82
D R RF LELEFVQCLANP Y+++LAQ YF+D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69
Query: 83 PHCLYFLELLQNANFRNAMAHP 104
P CL+ LELLQ +FR + +
Sbjct: 70 PQCLHMLELLQYEHFRKELVNA 91
>sp|Q9Y3C7|MED31_HUMAN Mediator of RNA polymerase II transcription subunit 31 OS=Homo
sapiens GN=MED31 PE=1 SV=1
Length = 131
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 60/82 (73%)
Query: 23 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMY 82
D R RF LELEFVQCLANP Y+++LAQ YF+D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKY 69
Query: 83 PHCLYFLELLQNANFRNAMAHP 104
P CL+ LELLQ +FR + +
Sbjct: 70 PQCLHMLELLQYEHFRKELVNA 91
>sp|Q59P87|MED31_CANAL Mediator of RNA polymerase II transcription subunit 31 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SOH1 PE=3
SV=1
Length = 146
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
R+ +ELEFVQ L+N Y++YLAQN YF DE FI YL YLQYW +PEY KF++YP+CL+ L
Sbjct: 30 RWEIELEFVQSLSNIPYVNYLAQNNYFNDENFINYLNYLQYWTQPEYSKFLVYPNCLHIL 89
Query: 90 ELLQNANFR 98
+LLQ+ NFR
Sbjct: 90 KLLQDENFR 98
>sp|Q28FE2|MED31_XENTR Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus
tropicalis GN=med31 PE=2 SV=2
Length = 128
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%)
Query: 25 DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH 84
+ R RF LELEFVQCLANP Y+++LAQ YF+D++F+ YLKYL YW+ PEY K++ YP
Sbjct: 9 EQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQ 68
Query: 85 CLYFLELLQNANFRNAMAH 103
CL+ LELLQ +FR + +
Sbjct: 69 CLHMLELLQYEHFRKELVN 87
>sp|Q6GQA1|MD31B_XENLA Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus
laevis GN=med31-b PE=2 SV=2
Length = 129
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%)
Query: 28 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 87
R RF LELEFVQCLANP Y+++LAQ YF+D++F+ YLKYL YW+ PEY K++ YP CL+
Sbjct: 13 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLH 72
Query: 88 FLELLQNANFRNAMA 102
LELLQ +FR +
Sbjct: 73 MLELLQYEHFRKELV 87
>sp|Q4QR03|MD31A_XENLA Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus
laevis GN=med31-a PE=2 SV=2
Length = 128
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%)
Query: 25 DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH 84
+ R RF LELEFVQCLANP Y+++LAQ YF+D+ F+ Y+KYL YW+ PEY K++ YP
Sbjct: 9 EQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLKYPQ 68
Query: 85 CLYFLELLQNANFRNAMAH 103
CL+ LELLQ +FR + +
Sbjct: 69 CLHMLELLQYEHFRKELVN 87
>sp|Q17DI7|MED31_AEDAE Mediator of RNA polymerase II transcription subunit 31 OS=Aedes
aegypti GN=MED31 PE=3 SV=1
Length = 218
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Query: 25 DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH 84
D + RF ELEFVQCLANP Y+H+LAQ +F+D FI YLKYL +W+ PE K++ YP
Sbjct: 17 DAQKLRFQAELEFVQCLANPNYLHFLAQRGFFKDSNFINYLKYLLHWKDPEMAKYLKYPM 76
Query: 85 CLYFLELLQNANFRNAMAHPANKVRLCC 112
CLYFL+LLQ +FR + + CC
Sbjct: 77 CLYFLDLLQYEHFRREIVNAQ-----CC 99
>sp|Q6CAU9|MED31_YARLI Mediator of RNA polymerase II transcription subunit 31 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SOH1 PE=3 SV=1
Length = 160
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 55/75 (73%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
RF ELEFVQ LANP Y+ YLA N+Y E F+ YL YL+YW+ P+Y +F++YP+CL+ L
Sbjct: 27 RFEAELEFVQSLANPQYLSYLAHNKYLESPEFLNYLSYLEYWREPKYARFLVYPNCLHVL 86
Query: 90 ELLQNANFRNAMAHP 104
+LLQ A FR ++ P
Sbjct: 87 KLLQYATFRKEISRP 101
>sp|Q61DP3|MED31_CAEBR Mediator of RNA polymerase II transcription subunit 31
OS=Caenorhabditis briggsae GN=mdt-31 PE=3 SV=2
Length = 168
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 22 KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 81
+ P+ + RF +E EFVQ LANP Y+++LAQ YF++E F+ YLKYL YW+ P+Y + +
Sbjct: 2 ETPESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKNPQYARCLK 61
Query: 82 YPHCLYFLELLQNANFRNAMAH 103
+P CL+ LE LQ+ FR+AMA+
Sbjct: 62 FPQCLHMLEALQSQQFRDAMAY 83
>sp|Q8MPD6|MED31_TAESO Mediator of RNA polymerase II transcription subunit 31 OS=Taenia
solium GN=Ts24233 PE=2 SV=1
Length = 148
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 54/79 (68%)
Query: 25 DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH 84
+D RF +ELEFVQ L NP Y+ +LAQ F+ FI YL YLQYW+ P Y +FI YP
Sbjct: 25 EDPWVRFQIELEFVQSLGNPDYLTFLAQQGCFDKPEFINYLSYLQYWKSPSYSRFITYPF 84
Query: 85 CLYFLELLQNANFRNAMAH 103
CL+ L+LLQ+ +FR +AH
Sbjct: 85 CLHMLDLLQSPDFRREVAH 103
>sp|P91869|MED31_CAEEL Mediator of RNA polymerase II transcription subunit 31
OS=Caenorhabditis elegans GN=mdt-31 PE=3 SV=1
Length = 163
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 28 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 87
+ RF +E EFVQ LANP Y+++LAQ YF++E F+ YLKYL YW+ P+Y + + +P CL+
Sbjct: 8 KTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKDPQYARCLKFPQCLH 67
Query: 88 FLELLQNANFRNAMAH 103
LE LQ+ FR++MA+
Sbjct: 68 MLEALQSQQFRDSMAY 83
>sp|Q7SF81|MED31_NEUCR Mediator of RNA polymerase II transcription subunit 31
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=soh-1 PE=3 SV=1
Length = 134
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 7 NEEASDAPSSPKKVYKDPD-DGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYL 65
N A + P+ P +P G RF LELEFVQ L NP Y+++LA + + AFI YL
Sbjct: 9 NSSAREPPAPPGSGADEPKYGGYTRFELELEFVQALGNPLYLNHLASRKLLSNPAFIAYL 68
Query: 66 KYLQYWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHP--ANKVRLCCL 113
YLQYW RP Y+K+I YP L LELLQ FR + P ++RL +
Sbjct: 69 DYLQYWSRPPYLKYITYPGPTLKNLELLQQEKFRQDIISPDLVERLRLEGM 119
>sp|Q6BUN9|MED31_DEBHA Mediator of RNA polymerase II transcription subunit 31
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SOH1 PE=3 SV=2
Length = 135
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 29 QRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYF 88
+R+ +ELEFVQ LAN Y+++LAQN Y + F+ Y++YL YW+ PEY K+++YP+CL+
Sbjct: 7 KRWEIELEFVQSLANIQYLNHLAQNNYLSNPEFLNYIEYLNYWKEPEYSKYLVYPNCLHI 66
Query: 89 LELLQNANFRNAMAHP 104
L LLQN FR + P
Sbjct: 67 LTLLQNEEFRKNILIP 82
>sp|Q0U957|MED31_PHANO Mediator of RNA polymerase II transcription subunit 31
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=SOH1 PE=3 SV=3
Length = 115
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 27 GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH-C 85
G RF LELEFVQCLANP Y++YLA +YF+ F+ YL YLQY+ P+YIKF+ +P
Sbjct: 17 GFTRFELELEFVQCLANPVYLNYLATQKYFDKPEFVAYLDYLQYFAEPKYIKFLHHPGPT 76
Query: 86 LYFLELLQNANFRNAMAHP--ANKVRL 110
L LELLQ FR + P ANK+++
Sbjct: 77 LRALELLQQERFRQDIITPGLANKLQI 103
>sp|P0CS74|MED31_CRYNJ Mediator of RNA polymerase II transcription subunit 31
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SOH1 PE=3 SV=1
Length = 180
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
RF ELEF+QCLA+P Y+H L Y AF+ YLKYL+YW+ P+Y++FI+YP CL +L
Sbjct: 32 RFQSELEFIQCLAHPQYLHELHIQGYLGKPAFLNYLKYLEYWREPQYVRFIIYPTCLVYL 91
Query: 90 ELLQNANFRNAMA 102
LLQ FR+ +
Sbjct: 92 TLLQTELFRSRLG 104
>sp|P0CS75|MED31_CRYNB Mediator of RNA polymerase II transcription subunit 31
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SOH1 PE=3 SV=1
Length = 180
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
RF ELEF+QCLA+P Y+H L Y AF+ YLKYL+YW+ P+Y++FI+YP CL +L
Sbjct: 32 RFQSELEFIQCLAHPQYLHELHIQGYLGKPAFLNYLKYLEYWREPQYVRFIIYPTCLVYL 91
Query: 90 ELLQNANFRNAMA 102
LLQ FR+ +
Sbjct: 92 TLLQTELFRSRLG 104
>sp|Q8SU76|MED31_ENCCU Mediator of RNA polymerase II transcription subunit 31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=SOH1 PE=3
SV=1
Length = 103
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
RF ELEFVQ L NP Y+ +L + +FE E F YL+YL+YW+ PEY +F+ YP CL L
Sbjct: 5 RFERELEFVQLLCNPDYLRWLTREGHFESEEFRSYLRYLEYWRSPEYSRFLTYPQCLAVL 64
Query: 90 ELLQNANFRNAMA 102
E L + N + ++
Sbjct: 65 EHLNSENINDMLS 77
>sp|Q75EB3|MED31_ASHGO Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SOH1 PE=3 SV=1
Length = 127
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 10/90 (11%)
Query: 9 EASDAPSSPKKVYKDPDDGRQ---RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGY 64
++S+ P P +G Q RF +ELEFVQ LAN Y+ +L Q++ ++D F Y
Sbjct: 4 KSSEPPFEPS------SEGEQLPSRFEVELEFVQSLANIPYVTFLLTQHQIWQDPRFKAY 57
Query: 65 LKYLQYWQRPEYIKFIMYPHCLYFLELLQN 94
LKYL+YW P Y +FI+YP+CL+ L+LL +
Sbjct: 58 LKYLEYWCEPPYTQFIVYPNCLFVLKLLNS 87
>sp|Q4P308|MED31_USTMA Mediator of RNA polymerase II transcription subunit 31 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=SOH1 PE=3 SV=1
Length = 153
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 1 MAASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEA 60
+ A+ N+ +SP + + + F +LEF+ LANP Y+++LA + +
Sbjct: 3 LGAATANDPIDSTLASPSRDEQRRQANQAAFSRDLEFLSSLANPYYLNHLALSGALSSPS 62
Query: 61 FIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN-ANFRNAMAHPA 105
F YLKYL Y++ P+Y+K++ YP L+FL+LLQN FR A PA
Sbjct: 63 FKRYLKYLDYFRHPKYVKYLHYPQALHFLDLLQNEEEFRLACRDPA 108
>sp|P38633|MED31_YEAST Mediator of RNA polymerase II transcription subunit 31
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SOH1 PE=1 SV=1
Length = 127
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 11 SDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQ 69
+AP++P D + RF +ELEF+Q LAN Y+ YL Q + ++ F YLKYL+
Sbjct: 6 GNAPATPSS---DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLE 62
Query: 70 YWQRPEYIKFIMYPHCLYFLELL 92
YW P Y + I+YP+CL+ L+LL
Sbjct: 63 YWCNPPYSQCIVYPNCLFILKLL 85
>sp|Q6CUD2|MED31_KLULA Mediator of RNA polymerase II transcription subunit 31
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SOH1 PE=3
SV=1
Length = 124
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 30 RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYF 88
RF +ELEFVQ LAN Y+ YL Q + ++D F YLKYL+YW PEY + I+YP+ L+
Sbjct: 19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFV 78
Query: 89 LELLQNANFRNAMAHPANKVRLC 111
L+LL N F + + + C
Sbjct: 79 LKLL-NTLFEGSTVNENGVLEGC 100
>sp|Q1E146|MED31_COCIM Mediator of RNA polymerase II transcription subunit 31
OS=Coccidioides immitis (strain RS) GN=SOH1 PE=3 SV=1
Length = 152
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 52/95 (54%), Gaps = 20/95 (21%)
Query: 30 RFLLELEFVQCLANPTYIHYLA-----------QNRYFED-------EAFIGYLKYL-QY 70
RF LELEFV LANP YI +LA Q+ +D +AF YL YL Y
Sbjct: 18 RFTLELEFVLSLANPYYISHLAVTYPHLLGISSQSTDNDDPSASSDAKAFAAYLAYLYDY 77
Query: 71 WQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHP 104
W+RPEY++F+ +P L L LLQ +FR A+ P
Sbjct: 78 WKRPEYVQFLTHPGATLRALRLLQEESFRKAVIRP 112
>sp|Q6FR78|MED31_CANGA Mediator of RNA polymerase II transcription subunit 31 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SOH1 PE=3 SV=1
Length = 130
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 30 RFLLELEFVQCLANPTYIHYL--AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 87
RF +ELEFVQ LAN Y+ YL Q ++D F YLKYL+YW P Y + I+YP+ L+
Sbjct: 24 RFEVELEFVQSLANIPYVTYLLTQQQLLWKDPKFKNYLKYLEYWCEPPYAQCIVYPNALF 83
Query: 88 FLELL 92
L+LL
Sbjct: 84 ILKLL 88
>sp|Q5BAD5|MED31_EMENI Mediator of RNA polymerase II transcription subunit 31
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=soh1 PE=3 SV=1
Length = 158
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 30 RFLLELEFVQCLANPTYIHYLA--------------QNRYFED------EAFIGYLKYL- 68
RF LELEFV LANP Y+ +LA +N +D EAF YL YL
Sbjct: 20 RFTLELEFVSSLANPYYLSHLAVNYPSLLGISKSGNENEVNDDNSDPDAEAFAAYLAYLY 79
Query: 69 QYWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHPANKVRLCCL 113
YW+ PEY +F+ +P L L LLQ FR + P RL +
Sbjct: 80 SYWKTPEYSQFLTHPGATLRALRLLQEEKFRRDIIRPQVIERLAGV 125
>sp|Q0CQK7|MED31_ASPTN Mediator of RNA polymerase II transcription subunit 31
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=soh1 PE=3 SV=2
Length = 160
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQ--------NRYFED-----------EAFIGYLKYL-Q 69
RF LELEFV LANP Y+ +LA N+ +D +AF YL YL
Sbjct: 21 RFTLELEFVSSLANPYYLSHLAVNYPNLLGINKSGDDNDTNDSGDPDAQAFAAYLAYLYS 80
Query: 70 YWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHP 104
YW+ PEY +F+ +P L L LLQ FR + P
Sbjct: 81 YWKTPEYAQFLTHPGATLRALRLLQEDTFRRDIIRP 116
>sp|A1CL91|MED31_ASPCL Mediator of RNA polymerase II transcription subunit 31
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=soh1 PE=3 SV=1
Length = 161
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 12 DAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLA-------------------- 51
D P + P+ RF LELEFV LANP Y+ +LA
Sbjct: 2 DQQPGPVQQSSPPNLTNPRFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSGDEGETSN 61
Query: 52 QNRYFEDEAFIGYLKYL-QYWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHP 104
++ E +AF YL YL YW+ PEY +F+ +P L L LLQ FR + P
Sbjct: 62 ESSDPEAKAFAAYLAYLYSYWKTPEYAQFLTHPGATLRALRLLQEETFRRDIIRP 116
>sp|A2QU71|MED31_ASPNC Mediator of RNA polymerase II transcription subunit 31
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=soh1 PE=3 SV=1
Length = 151
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 49/105 (46%), Gaps = 22/105 (20%)
Query: 30 RFLLELEFVQCLANPTYIHYLAQ--------NRYFED------------EAFIGYLKYL- 68
RF LELEFV LANP Y+ +LA N+ +D + F YL YL
Sbjct: 22 RFTLELEFVSSLANPYYLSHLAVTYPNLLGINKSGDDSDVNNDSTDPDAQGFAAYLAYLY 81
Query: 69 QYWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHPANKVRLCC 112
YW+ PEY +F+ +P L L LLQ FR + P RL
Sbjct: 82 SYWKTPEYAQFLTHPGATLRALRLLQEETFRRDIIRPDVIERLAG 126
>sp|Q4WYS1|MED31_ASPFU Mediator of RNA polymerase II transcription subunit 31
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=soh1 PE=3 SV=1
Length = 162
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 22/97 (22%)
Query: 30 RFLLELEFVQCLANPTYIHYLA---------------QNRYFED-----EAFIGYLKYL- 68
RF LELEFV LANP Y+ +LA N E +AF YL YL
Sbjct: 21 RFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSSDDSNTSTEGPDPEAQAFAAYLAYLY 80
Query: 69 QYWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHP 104
YW+ PEY +F+ +P L L LLQ +FR + P
Sbjct: 81 SYWKTPEYAQFLTHPGATLRALRLLQEESFRRDIIRP 117
>sp|A1D619|MED31_NEOFI Mediator of RNA polymerase II transcription subunit 31
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=soh1 PE=3 SV=1
Length = 162
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 30 RFLLELEFVQCLANPTYIHYLA--------------------QNRYFEDEAFIGYLKYL- 68
RF LELEFV LANP Y+ +LA + E +AF YL YL
Sbjct: 21 RFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSSDDSNTGTEGPDPEAQAFAAYLAYLY 80
Query: 69 QYWQRPEYIKFIMYPH-CLYFLELLQNANFRNAMAHP 104
YW+ PEY +F+ +P L L LLQ FR + P
Sbjct: 81 SYWKTPEYAQFLTHPGATLRALRLLQEETFRRDIIRP 117
>sp|Q6P824|GPD1L_XENTR Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus
tropicalis GN=gpd1l PE=2 SV=1
Length = 352
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 84 HCLYFLELLQNANFRNAMAHPANKVRLC 111
H L F ELLQ NFR + A+ V LC
Sbjct: 176 HGLLFKELLQTPNFRITVVEDADTVELC 203
>sp|Q801R8|GPD1L_XENLA Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus laevis
GN=gpd1l PE=2 SV=1
Length = 352
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 84 HCLYFLELLQNANFRNAMAHPANKVRLC 111
H L F ELLQ NFR + A+ V LC
Sbjct: 176 HGLLFKELLQTPNFRITVVEDADTVELC 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,069,997
Number of Sequences: 539616
Number of extensions: 1737572
Number of successful extensions: 3949
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3879
Number of HSP's gapped (non-prelim): 48
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)