Query 033637
Match_columns 114
No_of_seqs 100 out of 160
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fbi_B Mediator of RNA polymer 100.0 3.3E-46 1.1E-50 276.9 6.3 83 23-106 18-101 (130)
2 3fbi_B Mediator of RNA polymer 43.4 3.3 0.00011 30.6 -0.9 64 4-67 5-78 (130)
3 2lnm_A Protein TIC 40, chlorop 37.5 22 0.00075 21.8 2.3 11 97-107 37-47 (62)
4 1cmb_A Met APO-repressor; DNA- 36.8 16 0.00054 25.9 1.8 37 76-112 20-59 (104)
5 3os4_A Naprtase, nicotinate ph 35.9 35 0.0012 28.3 4.0 36 31-67 54-90 (407)
6 2qzc_A Transcriptional activat 21.7 70 0.0024 22.8 3.0 25 45-70 26-54 (214)
7 1z72_A Transcriptional regulat 20.6 70 0.0024 22.9 2.8 28 42-70 32-63 (225)
8 2gm8_A TENA homolog/THI-4 thia 20.2 73 0.0025 23.0 2.8 27 43-70 28-58 (221)
9 1udd_A Transcriptional regulat 20.1 73 0.0025 23.0 2.8 25 45-70 24-52 (226)
10 1rtw_A Transcriptional activat 19.3 83 0.0028 22.6 3.0 21 45-66 21-41 (220)
No 1
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=100.00 E-value=3.3e-46 Score=276.86 Aligned_cols=83 Identities=41% Similarity=0.827 Sum_probs=77.5
Q ss_pred CCccccchhHHHHHHHHhhcChHHHHHH-HHcccCCCHHHHHHHHHHhhhcCCCccccccChhHHHHHHhhCChHHHHHh
Q 033637 23 DPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAM 101 (114)
Q Consensus 23 ~~~~~~~RFe~ELEFVQ~LANP~YL~~L-A~~gy~~d~~FinYLkYL~YWk~PeYak~l~YP~cL~~L~LLq~~~FR~~i 101 (114)
+....++|||+|||||||||||+||+|| |++|||+||+|+||||||+|||+|+|+|||+||+||+||+|||+ .||++|
T Consensus 18 ~~~~l~~RFe~ELEFVQ~LANP~YL~~Llaq~gy~~d~~FinYLkYL~YWk~PeYakyl~YP~cL~~L~LLq~-~fr~ai 96 (130)
T 3fbi_B 18 DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLLNG-FMESAI 96 (130)
T ss_dssp -CCCCCCHHHHHHHHHHHTTSHHHHHHHHTCSGGGTSTHHHHHHHHGGGGGSTTGGGGCSCTHHHHHHHHHHH-HHHHCC
T ss_pred ccCcchhHHHHHHHHHHHhcCHHHHHHHHHHcccccCHHHHHHHHHHHHhcCCCchhHhcCccHHHHHHHHHH-HHHHHH
Confidence 3344589999999999999999999998 78899999999999999999999999999999999999999996 999999
Q ss_pred cCchH
Q 033637 102 AHPAN 106 (114)
Q Consensus 102 ~~p~~ 106 (114)
+||+.
T Consensus 97 ~nedg 101 (130)
T 3fbi_B 97 VNEDG 101 (130)
T ss_dssp BCSSS
T ss_pred hCcch
Confidence 99874
No 2
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=43.36 E-value=3.3 Score=30.57 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCccccchhHHHH---HHHH-------hhcChHHHHHHHHcccCCCHHHHHHHHH
Q 033637 4 SKDNEEASDAPSSPKKVYKDPDDGRQRFLLEL---EFVQ-------CLANPTYIHYLAQNRYFEDEAFIGYLKY 67 (114)
Q Consensus 4 ~~~~~~~~~~p~~p~~~~~~~~~~~~RFe~EL---EFVQ-------~LANP~YL~~LA~~gy~~d~~FinYLkY 67 (114)
|+.+++++..|+++......-++-..-|.-=| ..|+ -+.+|.+++||.--.||++|....||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~RFe~ELEFVQ~LANP~YL~~Llaq~gy~~d~~FinYLkYL~YWk~PeYakyl~Y 78 (130)
T 3fbi_B 5 SSTNGNAPATPSSDQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVY 78 (130)
T ss_dssp --------------CCCCCCHHHHHHHHHHHTTSHHHHHHHHTCSGGGTSTHHHHHHHHGGGGGSTTGGGGCSC
T ss_pred ccCCCCCCCCCCcccCcchhHHHHHHHHHHHhcCHHHHHHHHHHcccccCHHHHHHHHHHHHhcCCCchhHhcC
Confidence 34444444445544444443344445554433 3333 4556888888877789999987777654
No 3
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=37.47 E-value=22 Score=21.81 Aligned_cols=11 Identities=0% Similarity=-0.215 Sum_probs=4.6
Q ss_pred HHHHhcCchHH
Q 033637 97 FRNAMAHPANK 107 (114)
Q Consensus 97 FR~~i~~p~~~ 107 (114)
..+.+.||+++
T Consensus 37 ~~~~~~dP~v~ 47 (62)
T 2lnm_A 37 IMKYQNDKEVM 47 (62)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHHhChHHH
Confidence 33344444443
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=36.85 E-value=16 Score=25.93 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=27.9
Q ss_pred ccccccChhHHHHHHhhCChHHHHHhcC---chHHHhhhh
Q 033637 76 YIKFIMYPHCLYFLELLQNANFRNAMAH---PANKVRLCC 112 (114)
Q Consensus 76 Yak~l~YP~cL~~L~LLq~~~FR~~i~~---p~~~~~l~~ 112 (114)
-+|=|+----|.+|+.|.++.-|+.+.| ..+.+.||.
T Consensus 20 qvkkitvsIP~kVLkiLTdERTRRQvnnlRHATNSELLCE 59 (104)
T 1cmb_A 20 QVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 59 (104)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHTBSCCSHHHHHHH
T ss_pred hhceeEEeeeHHHHHHHhhHHHHHHHhhhhhcccHHHHHH
Confidence 3455555556899999999999999876 557777774
No 5
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=35.87 E-value=35 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhc-ChHHHHHHHHcccCCCHHHHHHHHH
Q 033637 31 FLLELEFVQCLA-NPTYIHYLAQNRYFEDEAFIGYLKY 67 (114)
Q Consensus 31 Fe~ELEFVQ~LA-NP~YL~~LA~~gy~~d~~FinYLkY 67 (114)
.+..|+++..|. .+.=+.||...++| +++|+.||+=
T Consensus 54 l~~~l~~l~~l~ft~~ei~yL~~~~~~-~~~fl~yL~~ 90 (407)
T 3os4_A 54 IRHQVTLMGQLALTSDEFIYLSSLPFF-QDDYLHWLRD 90 (407)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHTSSSC-CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhCCCC-CHHHHHHHHh
Confidence 455667777665 56668888877776 6778888775
No 6
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=21.72 E-value=70 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=17.6
Q ss_pred HHHHHHHHcccCCCHHHHHHHH----HHhh
Q 033637 45 TYIHYLAQNRYFEDEAFIGYLK----YLQY 70 (114)
Q Consensus 45 ~YL~~LA~~gy~~d~~FinYLk----YL~Y 70 (114)
.+++-|+ .|-+..+.|..||. ||..
T Consensus 26 pFv~~l~-~GtL~~~~f~~Yl~QDy~yl~~ 54 (214)
T 2qzc_A 26 EFILKMR-DGSLPLDIFRYYLIQDGKYVED 54 (214)
T ss_dssp HHHHHHH-TSCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence 3444443 78999999999987 6643
No 7
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=20.60 E-value=70 Score=22.94 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=19.9
Q ss_pred cChHHHHHHHHcccCCCHHHHHHHH----HHhh
Q 033637 42 ANPTYIHYLAQNRYFEDEAFIGYLK----YLQY 70 (114)
Q Consensus 42 ANP~YL~~LA~~gy~~d~~FinYLk----YL~Y 70 (114)
-+-.+++-|+ .|-+..+.|..||. ||..
T Consensus 32 ~~HPFv~~l~-~GtL~~~~f~~YL~QDy~yl~~ 63 (225)
T 1z72_A 32 INHRFVKELF-AGTIENKVLKDYLIQDYHFFDA 63 (225)
T ss_dssp HTCHHHHHHH-HTCCCHHHHHHHHHHHHHHHHH
T ss_pred HCChHHHHHh-cCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555564 78999999999987 6643
No 8
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=20.18 E-value=73 Score=22.99 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.9
Q ss_pred ChHHHHHHHHcccCCCHHHHHHHH----HHhh
Q 033637 43 NPTYIHYLAQNRYFEDEAFIGYLK----YLQY 70 (114)
Q Consensus 43 NP~YL~~LA~~gy~~d~~FinYLk----YL~Y 70 (114)
|-.+++-|+ .|-+..+.|..||. ||..
T Consensus 28 ~HPFv~~l~-~GtL~~~~f~~YL~QDy~yl~~ 58 (221)
T 2gm8_A 28 AHPFVAELY-AGTLPMEKFKYYLLQDYNYLVN 58 (221)
T ss_dssp TCHHHHHHH-HTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence 334455554 78999999999987 6643
No 9
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=20.13 E-value=73 Score=22.99 Aligned_cols=25 Identities=24% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHcccCCCHHHHHHHH----HHhh
Q 033637 45 TYIHYLAQNRYFEDEAFIGYLK----YLQY 70 (114)
Q Consensus 45 ~YL~~LA~~gy~~d~~FinYLk----YL~Y 70 (114)
.+++-|+ .|-+..+.|..||. ||..
T Consensus 24 PFv~~l~-~GtL~~~~f~~YL~QDy~yl~~ 52 (226)
T 1udd_A 24 PFVVQLY-SGTLPLEKFKFYVLQDFNYLVG 52 (226)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 78999999999987 6643
No 10
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=19.33 E-value=83 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=15.4
Q ss_pred HHHHHHHHcccCCCHHHHHHHH
Q 033637 45 TYIHYLAQNRYFEDEAFIGYLK 66 (114)
Q Consensus 45 ~YL~~LA~~gy~~d~~FinYLk 66 (114)
.+++-| ..|-+..+.|..||.
T Consensus 21 PFv~~l-~~GtL~~~~f~~YL~ 41 (220)
T 1rtw_A 21 KFLIEM-AENTIKKENFEKWLV 41 (220)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHH
T ss_pred hHHHHH-HcCCCCHHHHHHHHH
Confidence 344444 378899999999886
Done!