BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033638
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
Length = 114
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/114 (74%), Positives = 96/114 (84%)
Query: 1 MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
MEGD+ S G+ +D K+LQ FQKSF VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct: 1 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60
Query: 61 GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
GLIKELNNNI RV +LY DLS+SF RS++ASSEGES+ TLKS+GKA+QKR RSG
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114
>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1
Length = 119
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Query: 1 MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
MEGD++S G Q+D K+LQ FQKSF QVQDILDQNRLLINEINQNHESK D+L RNV
Sbjct: 5 MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64
Query: 61 GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKA-SQKRIRSG 114
GLI+ELNNNI V +LY DLS+SF RS++ASSEGES TLKS+GKA +QKR RSG
Sbjct: 65 GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119
>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1
Length = 109
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 91/113 (80%), Gaps = 7/113 (6%)
Query: 1 MEGDIFSSA-GNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
MEGD S G+ Q+D KILQ F+KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct: 1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60
Query: 60 VGLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIR 112
VGLI+ELNNN+ RV +LY DLSN+F++SMEASSEG+S SEG+ + +RIR
Sbjct: 61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDS-----SEGRGN-RRIR 107
>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1
SV=1
Length = 111
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 55/70 (78%)
Query: 16 DDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVN 75
D + + ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI++VVN
Sbjct: 22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81
Query: 76 LYADLSNSFT 85
+Y+DL+ SF+
Sbjct: 82 MYSDLNTSFS 91
>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1
Length = 125
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 4 DIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLI 63
D+ +SA A D ++ F + Q LDQNR LI +N+NH S++PDN++RNVGLI
Sbjct: 25 DVAASA---AVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLI 81
Query: 64 KELNNNITRVVNLYADLSNSFTRSME 89
E+N NI++V+ +Y+DLS +F + +
Sbjct: 82 NEINGNISQVMEIYSDLSLNFAKKFD 107
>sp|A1WVC9|RPOB_HALHL DNA-directed RNA polymerase subunit beta OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rpoB PE=3 SV=1
Length = 1381
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 EGDIFSSAGN-DAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNL-TRN 59
+G F+ GN D + DD I Q +G+ DILD R LI+ N N + D+L R
Sbjct: 426 DGKYFAGLGNADKEADDLIEQ-----YGESSDILDVLRELIDIRNGNGQVDDIDHLGNRR 480
Query: 60 VGLIKELNNNITRV 73
V + E+ N+ RV
Sbjct: 481 VRSVGEMAENVFRV 494
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 19 ILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYA 78
+ ++F K G+V ++ +L + I N S VP+ + LN+ ++ +L+
Sbjct: 105 LAEMFNKEAGRV---IEDFKLRVVYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFD 161
Query: 79 DLSNSFTRSMEASSEGESAATLKSEGKAS 107
D+S +F + E SSE S + +E K S
Sbjct: 162 DVSRTFEETSEKSSEAWSMISKLTEEKTS 190
>sp|Q9QY01|ULK2_MOUSE Serine/threonine-protein kinase ULK2 OS=Mus musculus GN=Ulk2 PE=1
SV=1
Length = 1037
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 41 INEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLY--ADLSNSFTRSMEASSEGESAA 98
I IN+ + SK L + + ++KEL + +V LY +L NS ME + G+ A
Sbjct: 38 IKSINKKNLSKSQILLGKEIKILKELQHE--NIVALYDVQELPNSVFLVMEYCNGGDLAD 95
Query: 99 TLKSEGKASQKRIR 112
L+++G S+ IR
Sbjct: 96 YLQAKGTLSEDTIR 109
>sp|Q8IYT8|ULK2_HUMAN Serine/threonine-protein kinase ULK2 OS=Homo sapiens GN=ULK2 PE=1
SV=3
Length = 1036
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 41 INEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLY--ADLSNSFTRSMEASSEGESAA 98
I IN+ + SK L + + ++KEL + +V LY +L NS ME + G+ A
Sbjct: 38 IKSINKKNLSKSQILLGKEIKILKELQHE--NIVALYDVQELPNSVFLVMEYCNGGDLAD 95
Query: 99 TLKSEGKASQKRIR 112
L+++G S+ IR
Sbjct: 96 YLQAKGTLSEDTIR 109
>sp|Q97FQ5|DNLJ2_CLOAB DNA ligase 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=ligA2 PE=3
SV=1
Length = 669
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 14 QVDDKILQIFQK--------------SFGQVQDILDQNRLLINEINQNHESKVPD 54
+V D IL+ FQK SF ++ D ++N+ + E N NHE K+P+
Sbjct: 63 RVGDVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPE 117
>sp|Q5U4E6|GOGA4_RAT Golgin subfamily A member 4 OS=Rattus norvegicus GN=Golga4 PE=1 SV=2
Length = 2259
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 46 QNHESKVPDNLTRNVGLIKELNNNITRVVNLYADLSNSF 84
Q H + V + L R +G + EL +T++ L NSF
Sbjct: 1295 QRHTATVGEALLRRMGQVSELEAQLTQLTEEQCTLKNSF 1333
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 40 LINEINQNHESKVPDNLTRNVGLI 63
L+NE+ Q++E+ VP++LT +VG I
Sbjct: 336 LVNEMTQHYENSVPEDLTVHVGDI 359
>sp|P67594|SYW_STAAW Tryptophan--tRNA ligase OS=Staphylococcus aureus (strain MW2)
GN=trpS PE=3 SV=1
Length = 329
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 KVPDNLTRNVGLIKELNNN---ITRVVNLYADLSNSFTRSMEASSEGESAATLKSE 103
K+ +T + G+IK +N IT ++++YA L++ + +EA EGE K +
Sbjct: 217 KIKSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGD 272
>sp|Q6GAT0|SYW_STAAS Tryptophan--tRNA ligase OS=Staphylococcus aureus (strain MSSA476)
GN=trpS PE=3 SV=1
Length = 329
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 KVPDNLTRNVGLIKELNNN---ITRVVNLYADLSNSFTRSMEASSEGESAATLKSE 103
K+ +T + G+IK +N IT ++++YA L++ + +EA EGE K +
Sbjct: 217 KIKSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGD 272
>sp|P67593|SYW_STAAN Tryptophan--tRNA ligase OS=Staphylococcus aureus (strain N315)
GN=trpS PE=1 SV=1
Length = 329
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 KVPDNLTRNVGLIKELNNN---ITRVVNLYADLSNSFTRSMEASSEGESAATLKSE 103
K+ +T + G+IK +N IT ++++YA L++ + +EA EGE K +
Sbjct: 217 KIKSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGD 272
>sp|P67592|SYW_STAAM Tryptophan--tRNA ligase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=trpS PE=3 SV=1
Length = 329
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 KVPDNLTRNVGLIKELNNN---ITRVVNLYADLSNSFTRSMEASSEGESAATLKSE 103
K+ +T + G+IK +N IT ++++YA L++ + +EA EGE K +
Sbjct: 217 KIKSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGD 272
>sp|Q5HH88|SYW_STAAC Tryptophan--tRNA ligase OS=Staphylococcus aureus (strain COL)
GN=trpS PE=3 SV=1
Length = 329
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 KVPDNLTRNVGLIKELNNN---ITRVVNLYADLSNSFTRSMEASSEGESAATLKSE 103
K+ +T + G+IK +N IT ++++YA L++ + +EA EGE K +
Sbjct: 217 KIKSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGD 272
>sp|Q6GI89|SYW_STAAR Tryptophan--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=trpS PE=3 SV=1
Length = 329
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 KVPDNLTRNVGLIKELNNN---ITRVVNLYADLSNSFTRSMEASSEGESAATLKSE 103
K+ +T + G+IK +N IT ++++YA L++ + +EA EGE K +
Sbjct: 217 KIKSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGD 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,734,127
Number of Sequences: 539616
Number of extensions: 1260943
Number of successful extensions: 4204
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4158
Number of HSP's gapped (non-prelim): 79
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)