Query 033640
Match_columns 114
No_of_seqs 107 out of 675
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00450 macrophage migration 100.0 3E-42 6.5E-47 218.2 12.8 110 1-113 1-111 (113)
2 PF01187 MIF: Macrophage migra 100.0 4.1E-42 8.8E-47 218.5 11.2 111 2-113 1-111 (114)
3 PTZ00397 macrophage migration 100.0 2E-41 4.3E-46 215.9 13.9 113 1-113 1-113 (116)
4 KOG1759 Macrophage migration i 100.0 9E-40 1.9E-44 203.3 12.4 112 1-113 1-112 (115)
5 PF14552 Tautomerase_2: Tautom 99.6 8E-15 1.7E-19 87.9 7.3 75 37-111 2-82 (82)
6 PRK01964 4-oxalocrotonate taut 99.5 1.6E-13 3.4E-18 78.6 6.1 54 60-113 3-56 (64)
7 cd00491 4Oxalocrotonate_Tautom 99.5 3E-13 6.6E-18 75.7 6.7 54 60-113 2-55 (58)
8 PF01361 Tautomerase: Tautomer 99.5 2.8E-13 6.1E-18 76.6 6.4 54 60-113 2-55 (60)
9 PRK02220 4-oxalocrotonate taut 99.5 2.5E-13 5.4E-18 77.0 6.0 54 60-113 3-56 (61)
10 PRK00745 4-oxalocrotonate taut 99.4 2.9E-13 6.3E-18 76.9 6.0 54 60-113 3-56 (62)
11 TIGR00013 taut 4-oxalocrotonat 99.4 4.1E-13 8.8E-18 76.5 6.2 54 60-113 2-56 (63)
12 PRK02289 4-oxalocrotonate taut 99.3 1.1E-11 2.4E-16 70.2 6.0 55 60-114 3-57 (60)
13 cd00580 CHMI 5-carboxymethyl-2 99.3 2.6E-10 5.7E-15 72.1 13.1 105 2-106 1-112 (113)
14 COG1942 Uncharacterized protei 99.2 4.8E-11 1E-15 69.1 6.6 54 60-113 3-57 (69)
15 PF08921 DUF1904: Domain of un 99.2 4.7E-10 1E-14 70.4 8.8 106 1-112 1-106 (108)
16 PRK01271 4-oxalocrotonate taut 99.1 6.1E-10 1.3E-14 65.8 5.7 51 60-110 3-54 (76)
17 PF14832 Tautomerase_3: Putati 99.0 2.1E-09 4.5E-14 70.1 8.7 112 1-113 1-118 (136)
18 PRK01964 4-oxalocrotonate taut 99.0 1.1E-09 2.5E-14 62.5 5.1 55 1-55 1-57 (64)
19 PRK02289 4-oxalocrotonate taut 99.0 2.7E-09 5.8E-14 60.3 5.9 54 1-54 1-56 (60)
20 PRK00745 4-oxalocrotonate taut 99.0 1.6E-09 3.5E-14 61.3 4.8 55 1-55 1-57 (62)
21 PRK02220 4-oxalocrotonate taut 98.9 2.5E-09 5.4E-14 60.3 5.3 55 1-55 1-57 (61)
22 COG1942 Uncharacterized protei 98.9 9.6E-09 2.1E-13 59.5 5.9 55 1-55 1-58 (69)
23 PRK15031 5-carboxymethyl-2-hyd 98.8 5.1E-07 1.1E-11 58.2 13.3 111 1-111 1-119 (126)
24 PRK01271 4-oxalocrotonate taut 98.7 5.8E-08 1.3E-12 57.3 5.3 46 1-46 1-47 (76)
25 PF01361 Tautomerase: Tautomer 98.6 9.5E-08 2.1E-12 53.7 5.2 54 2-55 1-56 (60)
26 cd00491 4Oxalocrotonate_Tautom 98.6 1.6E-07 3.4E-12 52.2 5.7 53 2-54 1-55 (58)
27 TIGR00013 taut 4-oxalocrotonat 98.6 1.7E-07 3.8E-12 53.0 5.4 54 2-55 1-57 (63)
28 PF02962 CHMI: 5-carboxymethyl 98.3 1.2E-05 2.7E-10 51.7 9.7 105 2-106 1-112 (124)
29 COG3232 HpaF 5-carboxymethyl-2 97.7 0.00041 8.8E-09 44.2 7.5 90 1-91 1-94 (127)
30 PTZ00397 macrophage migration 97.7 0.00016 3.4E-09 45.7 5.5 53 3-55 60-114 (116)
31 PF14552 Tautomerase_2: Tautom 97.4 0.00025 5.5E-09 42.4 4.0 50 3-52 31-82 (82)
32 PF14832 Tautomerase_3: Putati 96.5 0.0063 1.4E-07 39.7 4.8 48 64-112 8-55 (136)
33 PTZ00450 macrophage migration 95.9 0.022 4.7E-07 36.0 4.7 51 4-54 61-111 (113)
34 PF01187 MIF: Macrophage migra 95.1 0.058 1.3E-06 33.9 4.5 52 3-54 58-111 (114)
35 TIGR02544 III_secr_YscJ type I 94.1 1.2 2.5E-05 30.8 9.5 83 19-105 107-190 (193)
36 cd00580 CHMI 5-carboxymethyl-2 93.1 0.27 5.8E-06 30.8 4.6 43 3-45 62-108 (113)
37 KOG1759 Macrophage migration i 91.6 0.85 1.8E-05 28.9 5.4 50 3-52 59-108 (115)
38 TIGR02830 spore_III_AG stage I 89.4 5.3 0.00012 27.5 10.8 79 17-99 59-183 (186)
39 PF09581 Spore_III_AF: Stage I 88.2 6.1 0.00013 26.7 8.0 83 17-99 85-187 (188)
40 PRK15348 type III secretion sy 86.1 11 0.00023 27.2 8.5 77 22-103 110-187 (249)
41 cd00673 AlaRS_core Alanyl-tRNA 85.7 1.6 3.4E-05 31.1 4.0 30 74-103 96-125 (232)
42 PF08921 DUF1904: Domain of un 85.5 2 4.4E-05 26.9 4.1 38 66-103 6-43 (108)
43 PF02594 DUF167: Uncharacteris 85.2 1.2 2.5E-05 26.2 2.7 57 38-99 5-63 (77)
44 COG3887 Predicted signaling pr 85.1 12 0.00026 30.4 8.9 84 5-101 262-345 (655)
45 PRK00084 ispF 2-C-methyl-D-ery 83.9 11 0.00023 25.4 7.6 60 5-64 95-155 (159)
46 PRK05090 hypothetical protein; 83.3 8.2 0.00018 23.6 6.8 58 38-100 12-70 (95)
47 PF01514 YscJ_FliF: Secretory 83.1 6.7 0.00015 27.2 6.3 81 19-103 115-196 (206)
48 PRK00647 hypothetical protein; 82.3 9.2 0.0002 23.5 7.1 59 38-101 7-66 (96)
49 TIGR00151 ispF 2C-methyl-D-ery 82.0 13 0.00027 24.9 7.4 47 17-63 104-151 (155)
50 COG0245 IspF 2C-methyl-D-eryth 81.5 3.2 7E-05 27.8 4.0 89 17-112 37-141 (159)
51 PF09967 DUF2201: VWA-like dom 80.4 12 0.00027 23.7 7.7 91 3-105 2-94 (126)
52 cd06406 PB1_P67 A PB1 domain i 80.4 6.7 0.00015 23.3 4.7 27 81-107 26-52 (80)
53 PRK01530 hypothetical protein; 79.5 2.7 5.9E-05 26.2 3.0 24 77-100 54-77 (105)
54 PRK01310 hypothetical protein; 78.8 3.3 7.1E-05 25.8 3.2 58 38-100 13-76 (104)
55 PF14535 AMP-binding_C_2: AMP- 78.3 6 0.00013 23.8 4.2 63 23-93 8-72 (96)
56 COG1766 fliF Flagellar basal b 78.0 21 0.00046 28.6 8.2 80 17-101 133-215 (545)
57 TIGR02883 spore_cwlD N-acetylm 76.6 21 0.00045 24.2 8.9 68 17-87 114-188 (189)
58 cd00554 MECDP_synthase MECDP_s 75.8 21 0.00045 23.8 7.0 45 17-61 104-149 (153)
59 PF13222 DUF4030: Protein of u 75.3 5.6 0.00012 26.0 3.6 37 1-37 85-122 (142)
60 COG0245 IspF 2C-methyl-D-eryth 74.9 21 0.00046 23.9 6.3 47 18-64 106-153 (159)
61 PF11090 DUF2833: Protein of u 74.9 15 0.00033 22.1 5.2 51 41-91 4-55 (86)
62 KOG0188 Alanyl-tRNA synthetase 74.8 5.3 0.00011 33.2 4.1 35 69-103 97-131 (895)
63 TIGR00206 fliF flagellar basal 74.5 32 0.00069 27.7 8.4 77 18-99 134-213 (555)
64 PRK06007 fliF flagellar MS-rin 74.5 35 0.00075 27.3 8.6 77 18-99 134-213 (542)
65 PF01520 Amidase_3: N-acetylmu 72.6 18 0.00039 23.7 5.8 67 17-86 101-174 (175)
66 TIGR03795 chp_BMA0021 conserve 72.1 15 0.00033 23.3 4.9 38 69-106 26-64 (114)
67 COG4631 XdhB Xanthine dehydrog 71.3 41 0.00088 27.4 8.0 85 6-98 477-566 (781)
68 TIGR00151 ispF 2C-methyl-D-ery 70.4 11 0.00024 25.2 4.2 90 17-112 36-140 (155)
69 PRK08345 cytochrome-c3 hydroge 69.8 5.8 0.00013 28.7 3.1 37 75-114 221-257 (289)
70 TIGR03196 pucD xanthine dehydr 69.6 11 0.00024 31.3 5.0 78 17-96 490-567 (768)
71 PF14468 DUF4427: Protein of u 69.5 17 0.00038 23.4 4.8 82 18-99 7-108 (132)
72 COG3643 Glutamate formiminotra 69.5 7.1 0.00015 28.2 3.3 55 34-92 68-122 (302)
73 COG3509 LpqC Poly(3-hydroxybut 69.2 6.4 0.00014 29.2 3.1 24 76-99 126-149 (312)
74 PF02542 YgbB: YgbB family; I 69.1 18 0.00039 24.3 5.0 54 4-57 92-145 (157)
75 PRK00084 ispF 2-C-methyl-D-ery 69.1 12 0.00026 25.2 4.2 90 17-112 39-143 (159)
76 TIGR00344 alaS alanine--tRNA l 68.9 5.9 0.00013 33.4 3.3 30 74-103 94-123 (851)
77 PF10057 DUF2294: Uncharacteri 68.9 24 0.00051 22.2 5.4 80 17-96 9-95 (118)
78 PF10850 DUF2653: Protein of u 68.8 24 0.00051 21.5 7.0 77 18-102 8-86 (91)
79 cd00554 MECDP_synthase MECDP_s 68.7 13 0.00028 24.8 4.3 90 17-112 36-140 (153)
80 PRK07193 fliF flagellar MS-rin 68.5 60 0.0013 26.2 8.7 77 19-99 138-217 (552)
81 PF10057 DUF2294: Uncharacteri 68.4 13 0.00028 23.4 4.1 31 72-102 7-37 (118)
82 PF01411 tRNA-synt_2c: tRNA sy 68.3 6.7 0.00014 31.4 3.4 39 64-105 92-130 (552)
83 PF02542 YgbB: YgbB family; I 68.2 6.7 0.00015 26.3 2.9 49 60-112 93-141 (157)
84 PLN02900 alanyl-tRNA synthetas 66.4 7.2 0.00016 33.2 3.3 28 74-101 117-144 (936)
85 PF14581 SseB_C: SseB protein 66.3 9.8 0.00021 23.3 3.2 76 14-104 14-89 (108)
86 PRK00252 alaS alanyl-tRNA synt 65.7 6.6 0.00014 33.1 3.0 30 74-103 99-128 (865)
87 PF09581 Spore_III_AF: Stage I 64.9 12 0.00025 25.3 3.6 30 14-43 159-188 (188)
88 cd06411 PB1_p51 The PB1 domain 64.7 13 0.00027 22.0 3.2 29 80-108 21-50 (78)
89 PF10503 Esterase_phd: Esteras 64.3 8.1 0.00018 27.2 2.8 25 75-99 78-102 (220)
90 PRK05934 type III secretion sy 64.1 60 0.0013 24.4 8.3 75 17-99 69-146 (341)
91 COG1995 PdxA Pyridoxal phospha 62.8 64 0.0014 24.3 7.8 36 67-102 175-210 (332)
92 PF04787 Pox_H7: Late protein 61.9 40 0.00087 22.3 5.5 64 23-87 21-87 (147)
93 TIGR00557 pdxA 4-hydroxythreon 61.7 60 0.0013 24.3 7.1 66 24-99 131-201 (320)
94 PF10023 DUF2265: Predicted am 60.1 9.7 0.00021 28.7 2.7 44 69-112 44-89 (337)
95 TIGR01547 phage_term_2 phage t 59.8 45 0.00097 25.1 6.3 92 18-109 47-147 (396)
96 TIGR02965 xanthine_xdhB xanthi 59.7 9.4 0.0002 31.7 2.8 81 17-99 470-550 (758)
97 PRK12800 fliF flagellar MS-rin 58.8 98 0.0021 25.1 8.7 77 18-99 143-222 (574)
98 PLN02862 2-C-methyl-D-erythrit 57.3 66 0.0014 22.7 7.6 59 5-63 152-211 (216)
99 COG0013 AlaS Alanyl-tRNA synth 56.7 15 0.00033 31.1 3.6 33 74-106 103-135 (879)
100 PRK15324 type III secretion sy 56.4 74 0.0016 23.0 9.3 84 19-105 108-192 (252)
101 PRK09800 putative hypoxanthine 56.3 27 0.00059 30.0 5.0 80 17-98 687-766 (956)
102 PF02738 Ald_Xan_dh_C2: Molybd 55.8 7.8 0.00017 30.7 1.7 71 17-97 342-420 (547)
103 PLN02862 2-C-methyl-D-erythrit 55.8 27 0.00059 24.6 4.2 90 17-112 96-200 (216)
104 PF04954 SIP: Siderophore-inte 55.7 18 0.00038 22.6 3.1 25 75-99 89-113 (119)
105 PRK09490 metH B12-dependent me 55.6 19 0.00042 31.7 4.1 41 58-98 481-524 (1229)
106 PF02733 Dak1: Dak1 domain; I 55.5 45 0.00097 25.1 5.5 43 58-100 246-288 (325)
107 TIGR03194 4hydrxCoA_A 4-hydrox 55.4 14 0.0003 30.7 3.1 80 17-98 467-546 (746)
108 PRK01584 alanyl-tRNA synthetas 55.0 12 0.00026 30.4 2.6 29 74-102 97-127 (594)
109 TIGR02416 CO_dehy_Mo_lg carbon 54.8 14 0.00031 30.7 3.1 80 17-98 498-577 (770)
110 TIGR02024 FtcD glutamate formi 54.5 25 0.00053 26.1 4.0 28 65-92 95-122 (298)
111 PHA00432 internal virion prote 54.5 59 0.0013 21.3 5.7 60 32-91 31-92 (137)
112 PF11165 DUF2949: Protein of u 54.3 5.6 0.00012 22.2 0.5 20 78-97 2-21 (58)
113 PF04414 tRNA_deacylase: D-ami 54.1 56 0.0012 23.0 5.6 68 19-92 57-128 (213)
114 PF14813 NADH_B2: NADH dehydro 54.0 6.4 0.00014 22.8 0.7 10 86-95 60-69 (71)
115 PF04466 Terminase_3: Phage te 53.3 4.4 9.6E-05 30.7 0.0 77 31-110 64-145 (387)
116 PF09932 DUF2164: Uncharacteri 53.2 27 0.00058 20.5 3.3 25 69-93 3-27 (76)
117 PF10850 DUF2653: Protein of u 53.2 47 0.001 20.2 4.4 35 75-111 8-42 (91)
118 PF11694 DUF3290: Protein of u 52.8 29 0.00064 23.0 3.8 27 78-104 81-107 (149)
119 PF00691 OmpA: OmpA family; I 52.4 46 0.00099 19.4 6.5 29 70-99 44-76 (97)
120 PRK09970 xanthine dehydrogenas 52.0 29 0.00062 28.9 4.5 79 17-98 483-563 (759)
121 TIGR01215 minE cell division t 51.8 49 0.0011 19.5 4.4 35 69-103 33-67 (81)
122 PF02738 Ald_Xan_dh_C2: Molybd 51.6 19 0.00042 28.5 3.3 25 78-102 346-370 (547)
123 PF00809 Pterin_bind: Pterin b 51.6 16 0.00035 25.2 2.6 41 58-98 117-168 (210)
124 PF08968 DUF1885: Domain of un 51.1 34 0.00073 22.1 3.7 36 53-89 78-113 (130)
125 COG0296 GlgB 1,4-alpha-glucan 51.1 36 0.00078 27.9 4.7 60 52-113 139-201 (628)
126 COG1872 Uncharacterized conser 50.7 25 0.00055 21.8 3.0 36 60-99 37-73 (102)
127 PF14804 Jag_N: Jag N-terminus 50.4 29 0.00062 18.7 2.9 31 80-111 10-41 (52)
128 PF10015 DUF2258: Uncharacteri 50.4 29 0.00062 20.3 3.0 22 75-96 38-59 (75)
129 smart00213 UBQ Ubiquitin homol 50.0 23 0.0005 18.7 2.6 24 78-101 22-45 (64)
130 TIGR03313 Se_sel_red_Mo probab 49.9 25 0.00054 30.2 3.9 80 17-98 683-762 (951)
131 COG3579 PepC Aminopeptidase C 49.3 34 0.00074 26.2 4.0 36 71-106 200-235 (444)
132 PF08496 Peptidase_S49_N: Pept 48.7 49 0.0011 22.1 4.4 34 17-52 114-147 (155)
133 PF07837 FTCD_N: Formiminotran 47.0 58 0.0012 22.3 4.6 28 65-92 93-120 (178)
134 PRK09382 ispDF bifunctional 2- 46.6 40 0.00086 25.7 4.2 90 17-112 254-358 (378)
135 cd03485 MutL_Trans_hPMS_1_like 46.6 74 0.0016 20.1 6.4 88 24-111 2-103 (132)
136 KOG2426 Dihydroxyacetone kinas 46.4 1.5E+02 0.0033 23.8 7.4 69 23-101 238-306 (582)
137 PF00240 ubiquitin: Ubiquitin 45.9 35 0.00076 18.6 3.0 24 79-102 19-42 (69)
138 PRK14538 putative bifunctional 45.8 1.9E+02 0.0042 24.7 10.6 87 5-104 292-378 (838)
139 KOG4493 Uncharacterized conser 45.6 1.1E+02 0.0023 21.6 7.1 63 48-110 44-113 (219)
140 TIGR02610 PHA_gran_rgn putativ 45.4 51 0.0011 19.9 3.8 48 1-54 1-48 (91)
141 PF03780 Asp23: Asp23 family; 44.7 69 0.0015 19.2 5.8 45 59-103 60-107 (108)
142 PF02934 GatB_N: GatB/GatE cat 44.6 79 0.0017 23.4 5.3 70 1-71 147-220 (289)
143 PRK05883 acyl carrier protein; 43.5 25 0.00054 21.1 2.2 27 71-97 9-35 (91)
144 PRK13987 cell division topolog 43.2 75 0.0016 19.3 4.6 37 68-104 31-67 (91)
145 PF02662 FlpD: Methyl-viologen 43.2 60 0.0013 20.6 4.1 25 78-103 79-103 (124)
146 COG5499 Predicted transcriptio 42.8 22 0.00048 22.5 1.9 23 72-94 94-116 (120)
147 TIGR02082 metH 5-methyltetrahy 42.4 41 0.0009 29.6 4.1 41 58-98 465-508 (1178)
148 COG1550 Uncharacterized protei 42.4 80 0.0017 19.3 4.4 35 59-93 6-40 (95)
149 PRK05350 acyl carrier protein; 42.0 23 0.00049 20.5 1.9 24 74-97 4-27 (82)
150 PRK05863 sulfur carrier protei 41.6 30 0.00064 19.2 2.2 29 81-110 18-48 (65)
151 COG3252 Methenyltetrahydrometh 41.6 31 0.00066 25.2 2.7 23 81-103 148-170 (314)
152 PRK02746 pdxA 4-hydroxythreoni 41.5 1.6E+02 0.0034 22.4 7.8 33 67-99 179-211 (345)
153 PRK05312 pdxA 4-hydroxythreoni 41.3 1.5E+02 0.0034 22.3 7.8 67 24-99 138-213 (336)
154 PRK13989 cell division topolog 41.3 77 0.0017 18.8 4.7 35 69-103 35-69 (84)
155 PRK01909 pdxA 4-hydroxythreoni 41.3 1.5E+02 0.0033 22.3 7.9 33 67-99 172-204 (329)
156 COG0722 AroG 3-deoxy-D-arabino 41.2 1.4E+02 0.003 22.7 6.1 44 70-114 65-108 (351)
157 cd02413 40S_S3_KH K homology R 40.9 75 0.0016 18.6 4.0 27 78-104 52-78 (81)
158 COG0276 HemH Protoheme ferro-l 40.7 1.6E+02 0.0034 22.2 7.5 71 18-102 163-233 (320)
159 PF11976 Rad60-SLD: Ubiquitin- 40.7 54 0.0012 18.1 3.3 22 81-102 26-48 (72)
160 PF08002 DUF1697: Protein of u 40.7 44 0.00096 21.6 3.2 62 14-76 50-118 (137)
161 PF04456 DUF503: Protein of un 40.5 82 0.0018 18.9 4.6 34 59-92 5-38 (90)
162 PF03776 MinE: Septum formatio 40.2 72 0.0016 18.2 5.1 36 67-102 18-55 (70)
163 PRK13988 cell division topolog 40.1 89 0.0019 19.2 4.9 36 68-103 35-70 (97)
164 TIGR01565 homeo_ZF_HD homeobox 40.1 33 0.00072 18.9 2.2 24 81-104 34-57 (58)
165 COG1908 FrhD Coenzyme F420-red 39.9 72 0.0016 20.6 3.9 33 67-103 72-104 (132)
166 PF14894 Lsm_C: Lsm C-terminal 39.8 38 0.00082 19.2 2.4 20 79-98 2-21 (64)
167 TIGR02911 sulfite_red_B sulfit 39.4 43 0.00093 23.8 3.3 34 75-109 199-232 (261)
168 PRK09382 ispDF bifunctional 2- 38.8 1.8E+02 0.0038 22.2 7.6 47 17-63 322-369 (378)
169 COG1529 CoxL Aerobic-type carb 38.8 37 0.0008 28.2 3.2 38 76-113 468-507 (731)
170 PRK13878 conjugal transfer rel 38.7 2.4E+02 0.0053 23.8 11.5 86 2-94 67-157 (746)
171 PF06588 Muskelin_N: Muskelin 38.6 1.4E+02 0.003 20.9 6.0 55 30-91 38-97 (199)
172 PRK05477 gatB aspartyl/glutamy 38.5 1.9E+02 0.0042 22.9 6.9 72 1-73 148-223 (474)
173 PRK05659 sulfur carrier protei 38.5 31 0.00068 18.9 2.0 27 81-108 18-46 (66)
174 PRK00296 minE cell division to 38.4 88 0.0019 18.7 4.3 34 70-103 35-68 (86)
175 COG2136 IMP4 Predicted exosome 38.4 37 0.00081 23.4 2.7 27 1-28 1-27 (191)
176 cd02696 MurNAc-LAA N-acetylmur 38.3 1.1E+02 0.0024 19.9 8.6 65 17-85 100-171 (172)
177 PF12260 PIP49_C: Protein-kina 38.0 72 0.0016 21.6 4.1 41 69-111 56-96 (188)
178 PRK12346 transaldolase A; Prov 37.5 1.2E+02 0.0027 22.6 5.5 41 59-100 92-132 (316)
179 cd06927 RNAP_L L subunit of Ar 37.5 79 0.0017 18.6 3.7 26 2-29 51-76 (83)
180 PTZ00411 transaldolase-like pr 37.4 1.2E+02 0.0026 22.9 5.4 41 59-100 103-143 (333)
181 PF02289 MCH: Cyclohydrolase ( 37.0 43 0.00093 25.0 3.0 23 81-103 147-169 (313)
182 TIGR00133 gatB glutamyl-tRNA(G 36.9 2E+02 0.0044 22.8 6.8 71 1-72 151-225 (478)
183 PF02290 SRP14: Signal recogni 36.9 96 0.0021 18.7 5.8 72 17-89 3-90 (93)
184 cd01769 UBL Ubiquitin-like dom 36.9 53 0.0011 17.5 2.8 25 78-102 20-44 (69)
185 KOG2112 Lysophospholipase [Lip 36.9 73 0.0016 22.4 4.0 65 34-99 29-98 (206)
186 PF14560 Ubiquitin_2: Ubiquiti 36.7 88 0.0019 18.2 3.9 37 59-102 14-50 (87)
187 cd01763 Sumo Small ubiquitin-r 36.6 58 0.0013 19.1 3.1 22 81-102 37-58 (87)
188 COG0851 MinE Septum formation 36.2 1E+02 0.0022 18.7 4.0 36 68-103 33-68 (88)
189 cd01812 BAG1_N Ubiquitin-like 36.1 46 0.001 18.2 2.5 25 78-102 22-46 (71)
190 TIGR00874 talAB transaldolase. 35.9 1.5E+02 0.0032 22.2 5.7 41 59-100 91-131 (317)
191 PRK01146 DNA-directed RNA poly 35.7 88 0.0019 18.5 3.7 26 2-29 53-78 (85)
192 cd01809 Scythe_N Ubiquitin-lik 35.6 50 0.0011 18.0 2.6 24 78-101 23-46 (72)
193 PF06395 CDC24: CDC24 Calponin 35.5 63 0.0014 19.5 3.1 33 71-104 39-71 (89)
194 cd01806 Nedd8 Nebb8-like ubiq 35.0 58 0.0013 18.0 2.8 23 79-101 24-46 (76)
195 PF05121 GvpK: Gas vesicle pro 34.9 53 0.0011 19.9 2.6 37 67-103 40-82 (88)
196 cd00419 Ferrochelatase_C Ferro 34.7 1.2E+02 0.0026 19.4 4.5 31 74-104 39-69 (135)
197 COG1794 RacX Aspartate racemas 34.3 80 0.0017 22.6 3.9 35 63-97 4-39 (230)
198 cd00957 Transaldolase_TalAB Tr 34.2 1.6E+02 0.0035 22.0 5.6 41 59-100 91-131 (313)
199 COG4324 Predicted aminopeptida 33.9 80 0.0017 23.4 3.9 35 78-112 87-121 (376)
200 PF02698 DUF218: DUF218 domain 33.9 54 0.0012 21.0 2.9 24 74-98 52-75 (155)
201 cd03482 MutL_Trans_MutL MutL_T 33.8 1.2E+02 0.0027 18.9 4.5 46 65-111 49-94 (123)
202 PF01903 CbiX: CbiX; InterPro 33.5 1.1E+02 0.0023 18.2 4.3 38 67-108 2-39 (105)
203 PF04110 APG12: Ubiquitin-like 33.4 81 0.0018 18.9 3.3 24 79-102 29-53 (87)
204 PF12685 SpoIIIAH: SpoIIIAH-li 33.2 60 0.0013 22.2 3.1 36 59-99 161-196 (196)
205 PRK07535 methyltetrahydrofolat 33.2 98 0.0021 22.3 4.3 29 69-98 131-159 (261)
206 PRK03743 pdxA 4-hydroxythreoni 33.2 2.1E+02 0.0046 21.6 7.7 32 67-99 177-208 (332)
207 cd07027 RNAP_RPB11_like RPB11 33.0 1E+02 0.0022 18.1 3.7 26 2-29 51-76 (83)
208 PRK02264 N(5),N(10)-methenylte 32.8 50 0.0011 24.7 2.8 23 81-103 148-170 (317)
209 PRK05269 transaldolase B; Prov 32.3 1.8E+02 0.0039 21.8 5.6 41 59-100 93-133 (318)
210 PRK12449 acyl carrier protein; 32.1 64 0.0014 18.3 2.7 23 74-96 3-25 (80)
211 PF01282 Ribosomal_S24e: Ribos 32.0 65 0.0014 19.1 2.7 37 61-102 3-39 (84)
212 PF13439 Glyco_transf_4: Glyco 31.8 46 0.00099 20.8 2.3 30 78-108 147-176 (177)
213 smart00646 Ami_3 Ami_3. 31.8 1.2E+02 0.0026 18.3 7.0 47 17-67 42-88 (113)
214 cd00196 UBQ Ubiquitin-like pro 31.7 66 0.0014 15.7 2.6 24 79-102 21-44 (69)
215 PF07985 SRR1: SRR1; InterPro 31.4 92 0.002 16.8 4.8 35 65-99 6-40 (56)
216 PF03432 Relaxase: Relaxase/Mo 31.3 1.8E+02 0.0038 20.0 9.7 84 2-93 56-145 (242)
217 cd01804 midnolin_N Ubiquitin-l 31.2 71 0.0015 18.3 2.8 25 78-102 24-48 (78)
218 TIGR03311 Se_dep_Molyb_1 selen 31.1 57 0.0012 27.6 3.2 29 77-105 619-647 (848)
219 cd07029 RNAP_I_III_AC19 AC19 s 30.9 1.2E+02 0.0025 18.0 3.7 26 2-29 51-76 (85)
220 PF09623 Cas_NE0113: CRISPR-as 30.9 1.3E+02 0.0028 21.3 4.5 33 69-101 88-120 (224)
221 cd01798 parkin_N amino-termina 30.8 62 0.0013 17.8 2.5 25 78-102 21-45 (70)
222 PLN02833 glycerol acyltransfer 30.8 1.1E+02 0.0023 23.5 4.3 49 57-105 302-355 (376)
223 PF07387 Seadorna_VP7: Seadorn 30.7 1.4E+02 0.003 22.0 4.6 50 56-105 186-247 (308)
224 cd00740 MeTr MeTr subgroup of 30.6 1.1E+02 0.0025 21.8 4.3 30 69-98 134-163 (252)
225 PRK00232 pdxA 4-hydroxythreoni 30.4 2.4E+02 0.0052 21.3 7.8 65 24-99 139-208 (332)
226 cd00545 MCH Methenyltetrahydro 30.1 60 0.0013 24.3 2.8 23 81-103 147-169 (312)
227 COG5435 Uncharacterized conser 30.0 1.2E+02 0.0027 20.1 4.0 37 48-84 103-139 (147)
228 PRK13902 alaS alanyl-tRNA synt 29.8 58 0.0012 27.9 3.0 34 74-112 162-195 (900)
229 cd06407 PB1_NLP A PB1 domain i 29.7 1.2E+02 0.0027 17.7 4.1 26 79-104 23-49 (82)
230 KOG2772 Transaldolase [Carbohy 29.6 1.4E+02 0.0031 22.4 4.6 27 75-102 121-147 (337)
231 cd00454 Trunc_globin Truncated 29.6 1.3E+02 0.0029 18.1 4.6 58 17-92 38-95 (116)
232 TIGR03120 one_C_mch methenylte 29.2 63 0.0014 24.1 2.8 23 81-103 147-169 (312)
233 cd01803 Ubiquitin Ubiquitin. U 29.2 68 0.0015 17.7 2.5 24 78-101 23-46 (76)
234 KOG0006 E3 ubiquitin-protein l 29.2 70 0.0015 24.2 3.0 24 79-102 27-50 (446)
235 PF01227 GTP_cyclohydroI: GTP 29.1 1.9E+02 0.0041 19.8 4.9 61 17-79 112-176 (179)
236 PF13092 CENP-L: Kinetochore c 29.1 1.1E+02 0.0024 20.4 3.7 32 69-100 109-142 (162)
237 PLN02994 1-aminocyclopropane-1 29.0 72 0.0016 21.0 2.8 26 74-99 94-123 (153)
238 PF08774 VRR_NUC: VRR-NUC doma 29.0 1.3E+02 0.0028 17.8 4.0 21 57-77 62-83 (100)
239 cd01791 Ubl5 UBL5 ubiquitin-li 28.9 85 0.0018 17.9 2.8 23 79-101 25-47 (73)
240 PF15603 Imm45: Immunity prote 28.5 1.3E+02 0.0029 17.8 5.7 52 37-88 8-75 (82)
241 TIGR03194 4hydrxCoA_A 4-hydrox 28.4 71 0.0015 26.6 3.2 31 79-109 472-502 (746)
242 PF13656 RNA_pol_L_2: RNA poly 27.9 1.2E+02 0.0025 17.6 3.3 25 2-28 43-67 (77)
243 PF08652 RAI1: RAI1 like PD-(D 27.8 1.2E+02 0.0027 17.1 5.5 50 55-104 13-63 (69)
244 TIGR02416 CO_dehy_Mo_lg carbon 27.7 62 0.0013 27.1 2.8 33 79-111 503-537 (770)
245 TIGR02965 xanthine_xdhB xanthi 27.5 60 0.0013 27.1 2.7 27 78-104 474-500 (758)
246 cd00585 Peptidase_C1B Peptidas 27.5 1.9E+02 0.0041 22.7 5.3 31 74-104 200-230 (437)
247 PRK09970 xanthine dehydrogenas 27.5 67 0.0015 26.8 3.0 33 78-110 487-522 (759)
248 PF07208 DUF1414: Protein of u 27.3 1E+02 0.0023 16.1 2.9 20 68-87 23-42 (44)
249 PF01076 Mob_Pre: Plasmid reco 27.2 93 0.002 21.2 3.2 39 68-106 94-133 (196)
250 KOG2146 Splicing coactivator S 27.2 31 0.00068 25.6 0.9 77 8-87 33-109 (354)
251 COG5603 TRS20 Subunit of TRAPP 26.8 1E+02 0.0022 19.8 3.1 33 1-35 79-111 (136)
252 KOG4530 Predicted flavoprotein 26.7 2.1E+02 0.0046 19.5 4.7 84 14-111 19-102 (199)
253 PF08541 ACP_syn_III_C: 3-Oxoa 26.7 41 0.00089 19.5 1.2 22 80-101 22-43 (90)
254 PRK12309 transaldolase/EF-hand 26.7 2.3E+02 0.0051 21.8 5.6 41 59-100 97-137 (391)
255 CHL00124 acpP acyl carrier pro 26.7 56 0.0012 18.7 1.8 22 74-95 3-24 (82)
256 PRK13991 cell division topolog 26.5 1.5E+02 0.0033 17.8 4.8 37 68-104 33-70 (87)
257 PRK06437 hypothetical protein; 26.5 34 0.00074 19.2 0.8 18 81-99 23-40 (67)
258 COG1410 MetH Methionine syntha 26.5 1.5E+02 0.0032 25.2 4.6 29 69-98 162-190 (842)
259 PRK11835 hypothetical protein; 26.4 1.8E+02 0.0038 18.4 4.9 52 14-68 51-102 (114)
260 KOG2187 tRNA uracil-5-methyltr 26.4 3.5E+02 0.0076 21.9 8.0 96 2-98 280-388 (534)
261 COG4099 Predicted peptidase [G 26.3 90 0.0019 23.7 3.1 27 75-101 250-276 (387)
262 TIGR03642 cas_csx13 CRISPR-ass 26.3 1.7E+02 0.0037 18.7 4.1 32 69-101 65-98 (124)
263 PF00837 T4_deiodinase: Iodoth 26.3 2.5E+02 0.0054 20.2 5.7 73 20-99 117-208 (237)
264 KOG2255 Peptidyl-tRNA hydrolas 26.2 2.2E+02 0.0048 20.1 4.8 36 71-106 99-134 (224)
265 cd01789 Alp11_N Ubiquitin-like 25.8 1.5E+02 0.0032 17.3 4.0 38 60-104 14-51 (84)
266 cd06926 RNAP_II_RPB11 RPB11 su 25.7 1.5E+02 0.0033 17.8 3.6 27 2-30 59-85 (93)
267 cd01813 UBP_N UBP ubiquitin pr 25.6 84 0.0018 17.9 2.4 21 80-100 24-44 (74)
268 PTZ00487 ceramidase; Provision 25.5 2.4E+02 0.0053 23.7 5.7 48 49-101 80-131 (715)
269 PRK11789 N-acetyl-anhydromuran 25.5 1.1E+02 0.0023 21.1 3.2 46 57-104 113-160 (185)
270 TIGR03245 arg_AOST_alph argini 25.5 2.1E+02 0.0046 21.7 5.0 58 17-74 31-101 (336)
271 TIGR03244 arg_catab_AstA argin 25.5 1.9E+02 0.0041 21.9 4.8 58 17-74 31-100 (336)
272 PTZ00044 ubiquitin; Provisiona 25.4 88 0.0019 17.4 2.5 25 78-102 23-47 (76)
273 PLN03044 GTP cyclohydrolase I; 25.3 2.3E+02 0.0051 19.5 8.0 63 17-81 118-184 (188)
274 PF01545 Cation_efflux: Cation 25.3 2.5E+02 0.0054 19.8 7.4 78 18-104 204-282 (284)
275 cd07367 CarBb CarBb is the B s 25.2 2.2E+02 0.0048 20.4 5.0 40 2-41 133-175 (268)
276 cd01796 DDI1_N DNA damage indu 25.1 91 0.002 17.4 2.5 22 80-101 24-45 (71)
277 COG5609 Uncharacterized conser 25.0 1.3E+02 0.0028 19.4 3.2 31 72-102 7-37 (124)
278 TIGR03196 pucD xanthine dehydr 24.9 69 0.0015 26.8 2.6 27 77-103 493-519 (768)
279 cd01800 SF3a120_C Ubiquitin-li 24.9 93 0.002 17.6 2.5 23 80-102 22-44 (76)
280 cd00585 Peptidase_C1B Peptidas 24.8 2.3E+02 0.005 22.2 5.3 28 17-44 200-227 (437)
281 COG3221 PhnD ABC-type phosphat 24.8 1.8E+02 0.0039 21.5 4.5 32 61-92 37-68 (299)
282 KOG1321 Protoheme ferro-lyase 24.7 1.1E+02 0.0024 23.2 3.4 31 74-104 202-236 (395)
283 smart00591 RWD domain in RING 24.5 1.1E+02 0.0023 18.0 2.9 34 1-34 57-90 (107)
284 cd01805 RAD23_N Ubiquitin-like 24.5 1.2E+02 0.0026 16.8 2.9 24 78-101 23-48 (77)
285 cd00949 FBP_aldolase_I_bact Fr 24.5 3E+02 0.0065 20.4 6.9 76 1-78 170-250 (292)
286 TIGR03189 dienoyl_CoA_hyt cycl 24.4 2.6E+02 0.0056 19.7 7.0 53 3-55 11-63 (251)
287 PRK09800 putative hypoxanthine 24.2 1.2E+02 0.0026 26.2 3.9 30 79-108 692-721 (956)
288 cd01807 GDX_N ubiquitin-like d 24.1 93 0.002 17.4 2.4 23 79-101 24-46 (74)
289 KOG3332 N-acetylglucosaminyl p 24.0 2.8E+02 0.0061 20.0 6.6 63 35-102 36-109 (247)
290 PF14516 AAA_35: AAA-like doma 23.8 1.3E+02 0.0028 22.3 3.6 69 25-93 20-97 (331)
291 PRK11783 rlmL 23S rRNA m(2)G24 23.8 2.6E+02 0.0055 23.2 5.6 44 56-99 436-480 (702)
292 PF00061 Lipocalin: Lipocalin 23.5 1.9E+02 0.004 17.7 4.0 32 69-101 111-142 (144)
293 COG4624 Iron only hydrogenase 23.5 1.3E+02 0.0029 23.4 3.6 31 69-101 169-199 (411)
294 KOG2250 Glutamate/leucine/phen 23.4 1.6E+02 0.0035 23.6 4.2 37 68-112 154-190 (514)
295 PRK03371 pdxA 4-hydroxythreoni 23.4 3.3E+02 0.0071 20.5 7.9 32 67-99 176-207 (326)
296 cd01793 Fubi Fubi ubiquitin-li 23.4 1.1E+02 0.0024 17.1 2.6 23 79-101 22-44 (74)
297 PF05773 RWD: RWD domain; Int 23.4 93 0.002 18.4 2.5 35 1-35 65-100 (113)
298 PRK10431 N-acetylmuramoyl-l-al 23.3 3.7E+02 0.0081 21.2 6.6 43 48-90 368-417 (445)
299 PF03051 Peptidase_C1_2: Pepti 23.2 3.7E+02 0.0081 21.1 6.8 68 17-107 201-268 (438)
300 PRK07117 acyl carrier protein; 23.1 75 0.0016 18.5 1.9 23 74-96 3-26 (79)
301 PRK06495 enoyl-CoA hydratase; 23.1 2.8E+02 0.006 19.6 6.5 53 3-55 14-66 (257)
302 KOG0747 Putative NAD+-dependen 23.1 2.1E+02 0.0045 21.6 4.4 31 60-90 242-272 (331)
303 cd06193 siderophore_interactin 23.0 1E+02 0.0022 21.3 2.9 25 75-99 207-231 (235)
304 PF00564 PB1: PB1 domain; Int 22.9 1.6E+02 0.0034 16.6 4.3 30 78-107 24-53 (84)
305 PRK08221 anaerobic sulfite red 22.9 1.1E+02 0.0023 21.8 3.0 29 75-104 201-229 (263)
306 PRK04452 acetyl-CoA decarbonyl 22.9 76 0.0016 23.8 2.3 23 76-99 187-209 (319)
307 KOG3273 Predicted RNA-binding 22.8 2.9E+02 0.0062 19.6 5.5 63 24-99 176-240 (252)
308 cd04011 C2B_Ferlin C2 domain s 22.7 1.4E+02 0.0031 17.8 3.2 25 38-63 5-29 (111)
309 PRK10456 arginine succinyltran 22.6 2.2E+02 0.0047 21.7 4.6 58 17-74 33-102 (344)
310 cd01808 hPLIC_N Ubiquitin-like 22.6 1.1E+02 0.0024 16.8 2.5 24 78-101 22-45 (71)
311 PF15643 Tox-PL-2: Papain fold 22.5 1.7E+02 0.0036 18.2 3.3 31 69-100 16-46 (100)
312 COG4306 Uncharacterized protei 22.5 1.5E+02 0.0033 19.3 3.3 59 30-88 38-117 (160)
313 PF11212 DUF2999: Protein of u 22.4 78 0.0017 18.5 1.8 27 69-95 13-45 (82)
314 PF07355 GRDB: Glycine/sarcosi 22.3 1.3E+02 0.0028 22.9 3.4 65 24-93 36-114 (349)
315 PF03445 DUF294: Putative nucl 22.2 2.2E+02 0.0048 18.2 7.4 80 18-100 29-112 (138)
316 PRK07938 enoyl-CoA hydratase; 22.2 2.9E+02 0.0063 19.4 6.7 52 3-54 12-63 (249)
317 PF13989 YejG: YejG-like prote 22.2 2.1E+02 0.0046 17.8 4.7 51 15-68 49-99 (106)
318 COG2854 Ttg2D ABC-type transpo 22.0 98 0.0021 21.7 2.5 24 66-89 84-107 (202)
319 PRK00341 hypothetical protein; 22.0 1.7E+02 0.0036 17.6 3.3 36 57-96 14-49 (91)
320 PF03704 BTAD: Bacterial trans 21.8 1.2E+02 0.0025 19.0 2.8 24 71-94 112-135 (146)
321 TIGR03683 A-tRNA_syn_arch alan 21.7 1.1E+02 0.0024 26.3 3.2 33 74-112 159-191 (902)
322 PF07579 DUF1548: Domain of Un 21.5 1.4E+02 0.003 19.5 3.0 25 69-94 79-103 (135)
323 PRK03557 zinc transporter ZitB 21.5 3.4E+02 0.0073 19.9 5.6 40 4-46 253-292 (312)
324 PF06163 DUF977: Bacterial pro 21.5 1.3E+02 0.0028 19.5 2.8 21 68-88 4-24 (127)
325 PRK12556 tryptophanyl-tRNA syn 21.5 1.4E+02 0.003 22.4 3.4 44 62-106 45-89 (332)
326 KOG1390 Acetyl-CoA acetyltrans 21.4 60 0.0013 24.7 1.4 28 71-99 317-344 (396)
327 PF02130 UPF0054: Uncharacteri 21.3 1.8E+02 0.004 18.8 3.7 30 73-102 14-43 (145)
328 PF10939 DUF2631: Protein of u 21.3 46 0.00099 18.9 0.7 16 98-113 12-27 (65)
329 PF11454 DUF3016: Protein of u 21.3 2.1E+02 0.0045 18.8 3.8 50 56-105 10-62 (141)
330 PF01785 Closter_coat: Closter 21.3 1.3E+02 0.0027 20.5 3.0 31 66-96 10-40 (188)
331 TIGR03243 arg_catab_AOST argin 21.2 2.9E+02 0.0063 20.9 5.0 58 17-74 31-100 (335)
332 cd07991 LPLAT_LPCAT1-like Lyso 21.2 2.1E+02 0.0045 19.4 4.1 36 59-94 164-203 (211)
333 PF06364 DUF1068: Protein of u 21.2 83 0.0018 21.4 2.0 26 67-92 72-97 (176)
334 TIGR00063 folE GTP cyclohydrol 21.0 2.9E+02 0.0062 18.9 7.8 62 17-80 112-177 (180)
335 COG5488 Integral membrane prot 20.9 1.5E+02 0.0033 19.8 3.1 19 69-87 143-161 (164)
336 PRK04028 glutamyl-tRNA(Gln) am 20.9 4.9E+02 0.011 21.6 7.1 83 1-94 183-278 (630)
337 PRK13364 protocatechuate 4,5-d 20.9 3.4E+02 0.0074 19.8 6.9 57 2-60 143-201 (278)
338 PRK08474 F0F1 ATP synthase sub 20.8 2.5E+02 0.0053 18.7 4.3 27 4-34 106-132 (176)
339 PLN02837 threonine-tRNA ligase 20.8 4.7E+02 0.01 21.3 7.0 41 50-91 68-108 (614)
340 PF08608 Wyosine_form: Wyosine 20.7 1E+02 0.0022 17.2 2.0 9 59-67 5-13 (62)
341 PF07494 Reg_prop: Two compone 20.5 99 0.0021 13.4 1.9 19 90-108 1-19 (24)
342 PF13592 HTH_33: Winged helix- 20.2 98 0.0021 16.7 1.9 15 78-92 7-21 (60)
343 PF13541 ChlI: Subunit ChlI of 20.2 2.4E+02 0.0053 17.8 4.9 16 87-102 36-51 (121)
344 cd06183 cyt_b5_reduct_like Cyt 20.1 97 0.0021 21.0 2.3 23 75-98 210-233 (234)
345 cd03415 CbiX_CbiC Archaeal sir 20.0 2.5E+02 0.0054 17.8 5.9 41 63-107 5-45 (125)
346 PF12436 USP7_ICP0_bdg: ICP0-b 20.0 1.2E+02 0.0025 21.7 2.7 24 77-100 201-224 (249)
No 1
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=100.00 E-value=3e-42 Score=218.17 Aligned_cols=110 Identities=33% Similarity=0.555 Sum_probs=102.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHH-HHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATS-TVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSA 79 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~-~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~ 79 (114)
||+++|+||++.++++ ++++++.+. ++++++||||+|+||++++++.|.|||+++||||++|+++|++++++|+++++
T Consensus 1 MP~~~i~tNv~~~~~~-~~~l~~~~~~~~a~~lgKPe~yvmV~~~~~~~m~fgGs~~P~A~~~l~siG~~~~~~n~~~s~ 79 (113)
T PTZ00450 1 MPFLQTIVSVSLDDQK-RANLSQAYRMICREELGKPEDFVMTAFSDSTPMSFQGSTAPAAYVRVEAWGEYAPSKPKMMTP 79 (113)
T ss_pred CCEEEEEecCCCcccC-HHHHHHHHHHHHHHhhCCCHHHEEEEEeCCceEEEcCCCCCEEEEEEEEecCcCHHHHHHHHH
Confidence 9999999999988874 556665555 66699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 80 AISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+||++++++||||++||||.|+|. ++|||||-
T Consensus 80 ~i~~~l~~~LgIp~dRiYI~f~d~--~~~G~nG~ 111 (113)
T PTZ00450 80 RITAAITKECGIPAERIYVFYYST--KHCGWNGT 111 (113)
T ss_pred HHHHHHHHHcCCCcccEEEEEEcH--HHcccCcE
Confidence 999999999999999999999995 79999994
No 2
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=100.00 E-value=4.1e-42 Score=218.54 Aligned_cols=111 Identities=46% Similarity=0.786 Sum_probs=102.5
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
|+++|+||++.++. +++|++++++++|+++|||+++|||+++++++|+|||+++||+|++|+++|.+++++|++++++|
T Consensus 1 P~~~i~TNv~~~~~-~~~f~~~ls~~va~~lgKpe~~i~V~v~~~~~m~fgGs~~P~a~v~l~sig~~~~~~n~~~s~~i 79 (114)
T PF01187_consen 1 PCLEIKTNVSASKV-PDDFLKELSKLVAELLGKPESYIMVTVEDGQRMSFGGSDDPAAFVELKSIGGLDPEQNKKYSAAI 79 (114)
T ss_dssp -EEEEEESS-GGGS-HTTHHHHHHHHHHHHHTSTGGGEEEEEEESTEEEETTB-SS-EEEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCchhc-hHHHHHHHHHHHHHHhCcchhhEEEEeeCCceEEECCCCCCEEEEEEEEccCCCHHHHHHHHHHH
Confidence 99999999998765 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++++||||++|+||.|+|++++||||||.
T Consensus 80 ~~~l~~~LgIp~~Riyi~f~d~~~~~~g~nG~ 111 (114)
T PF01187_consen 80 TEFLEEELGIPPDRIYINFHDLPAWNVGWNGT 111 (114)
T ss_dssp HHHHHHHHT--GGGEEEEEEEETGGGEEETTE
T ss_pred HHHHHHHhCCCcCceEEEEEECCHHHeeeCcE
Confidence 99999999999999999999999999999994
No 3
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=100.00 E-value=2e-41 Score=215.95 Aligned_cols=113 Identities=34% Similarity=0.591 Sum_probs=111.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||++.+++++++|++++++++++.+|||++|+||+++++.+|.|||+++|+++++|+++|++++++|++++++
T Consensus 1 MP~~~i~tn~~~~~~~~~~~~~~~~~~l~~~lgkPe~~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~ 80 (116)
T PTZ00397 1 MPCCQVSTNVNATDDQADAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAA 80 (116)
T ss_pred CCeEEEEecCCCccccHHHHHHHHHHHHHHHhCCChHHEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.++++|||+++||||.|++++++||||||-
T Consensus 81 i~~~l~~~lgi~~~rv~I~f~~~~~~~w~~~G~ 113 (116)
T PTZ00397 81 ITKILASHLKVKSERVYIEFKDCSAQNWAFNGS 113 (116)
T ss_pred HHHHHHHHhCcCcccEEEEEEECChhheeEcce
Confidence 999999999999999999999999999999995
No 4
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=100.00 E-value=9e-40 Score=203.28 Aligned_cols=112 Identities=48% Similarity=0.778 Sum_probs=109.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||++.+++ ++.|.++++.++|+++|||++||||++..+++|.|||+++||+|++++|+|++++++|++++++
T Consensus 1 MP~l~i~TNv~~~~V-~~~fe~elt~~lAkimgkP~~~i~V~l~~~~~i~fggt~eP~A~~~l~Sig~v~~~~N~~~sa~ 79 (115)
T KOG1759|consen 1 MPVLRIQTNVPVDKV-PDGFEKELTKALAKIMGKPEDYIMVELAGGVRIAFGGTTEPAAYASLKSIGGVGAIVNRSYSAA 79 (115)
T ss_pred CCeEEEeccCCcccC-CccHHHHHHHHHHHHhCCChhhEEEEecCCceEeccCCCCccEEEEEEeccccChhHhHHHHHH
Confidence 999999999999888 6779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+|++++++|+++++|+||+|++.++..+||||.
T Consensus 80 l~~il~~~L~l~~~rv~I~f~dl~~~~ig~nG~ 112 (115)
T KOG1759|consen 80 LTEILEKELSLDPDRVYIKFYDLNAAFIGFNGS 112 (115)
T ss_pred HHHHHHHHhCCCCCeEEEEEecCChhHccccCe
Confidence 999999999999999999999999999999995
No 5
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=99.59 E-value=8e-15 Score=87.89 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=56.8
Q ss_pred cEEEEEEeCCceeeec------CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccc
Q 033640 37 AYVMIVLKGSVPMSFG------GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110 (114)
Q Consensus 37 ~~i~v~~~~~~~m~~g------g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~ 110 (114)
.+..++-++...|.+. +.++-..+++|++..|++.++|++++++|++.|++++||+|++|+|.+.+.+++||||
T Consensus 2 rfqi~~~~~~~~~~~~~~ylg~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edWSF 81 (82)
T PF14552_consen 2 RFQIIHEHEPDEFIYDPTYLGIDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIVLVENPREDWSF 81 (82)
T ss_dssp SEEEEEEE-GGGEEE-TTTS--TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEE
T ss_pred eeEEEEEeCcccEEECCccCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccCCC
Confidence 3556666666777777 3668889999999988999999999999999999999999999999999999999998
Q ss_pred c
Q 033640 111 L 111 (114)
Q Consensus 111 ~ 111 (114)
+
T Consensus 82 g 82 (82)
T PF14552_consen 82 G 82 (82)
T ss_dssp C
T ss_pred C
Confidence 6
No 6
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=99.47 E-value=1.6e-13 Score=78.60 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=51.1
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++...+++++++++++++|++.+.+.||+|+++++|.+.+++++|||++|-
T Consensus 3 ~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gg~ 56 (64)
T PRK01964 3 IVQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPSSHWGVAGV 56 (64)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcChHHeeECCE
Confidence 678887778999999999999999999999999999999999999999999994
No 7
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=99.46 E-value=3e-13 Score=75.74 Aligned_cols=54 Identities=7% Similarity=0.207 Sum_probs=51.1
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++...++++++|++++++|++.+.+.+|+++++++|.|+++++++||++|-
T Consensus 2 ~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~~gg~ 55 (58)
T cd00491 2 FVQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENWGIGGE 55 (58)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhceECCE
Confidence 578887778999999999999999999999999999999999999999999994
No 8
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=99.46 E-value=2.8e-13 Score=76.55 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=48.9
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++...++++++++++++++++.+.+.||+++++++|.|++++++|||.+|-
T Consensus 2 ~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w~~gG~ 55 (60)
T PF01361_consen 2 FITIKIPEGRTAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENWGIGGK 55 (60)
T ss_dssp EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCEEETTE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhheEECCE
Confidence 688998999999999999999999999999999999999999999999999984
No 9
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=99.45 E-value=2.5e-13 Score=76.97 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++...|+|+++|++++++|++.+.+.+|+|+++++|.|+++++++||++|-
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~~~~gG~ 56 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSKNHYAVGGK 56 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeChhHeEECCE
Confidence 677887778999999999999999999999999999999999999999999995
No 10
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=99.45 E-value=2.9e-13 Score=76.92 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=51.5
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++|+...+++++++++++++|++.+.+.||+++++++|.|++++++|||++|-
T Consensus 3 ~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~~gG~ 56 (62)
T PRK00745 3 TFHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWATGGK 56 (62)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHeeECCE
Confidence 688888878999999999999999999999999999999999999999999995
No 11
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=99.44 E-value=4.1e-13 Score=76.51 Aligned_cols=54 Identities=6% Similarity=0.165 Sum_probs=51.0
Q ss_pred EEEEEee-eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSI-GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~-~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++.. .+++++++++++++|++.+.+.||+++++++|.+.++++++||++|-
T Consensus 2 ~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~ 56 (63)
T TIGR00013 2 FVNIYILKEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNNYGIGGE 56 (63)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCE
Confidence 5778877 68999999999999999999999999999999999999999999995
No 12
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=99.29 E-value=1.1e-11 Score=70.16 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=51.6
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccccC
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL 114 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~~ 114 (114)
+++++...|+|+|++++++++|++.+.+.+|+|++.+.|.|.|+++++|+.+|-|
T Consensus 3 ~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~~~~g~~ 57 (60)
T PRK02289 3 FVRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTYYPQGEM 57 (60)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhheEECCEE
Confidence 5777777789999999999999999999999999999999999999999999964
No 13
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=99.29 E-value=2.6e-10 Score=72.14 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=91.6
Q ss_pred CeEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC--CCCeeEEEEEeeeCCChHHhHHHH
Q 033640 2 PCLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT--EDPAAYGELVSIGGLNPDVNKKLS 78 (114)
Q Consensus 2 P~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~--~~p~~~v~l~~~~~~~~~~~~~~~ 78 (114)
|.+.|.-...+ ++.+.+++++.+++++.+...-|+..+-+.......+..|.. ++..++++++...|++.++|++++
T Consensus 1 PH~~Ieys~~l~~~~~~~~l~~~v~~al~~~~~~p~~dik~r~~~~~~y~~~~~~~~~~fi~i~i~l~~GRs~eqK~~l~ 80 (113)
T cd00580 1 PHLIIEYSANLEGRADIPELLRALHDALVASGLFPLGGIKVRAIRADHYRVGDGDEDDAFIHVTLRILAGRSEEQKQELS 80 (113)
T ss_pred CeEEEEeCCCccccCCHHHHHHHHHHHHHhcCCCChhccEEeeEEcceEEECCCCCCCcEEEEEEEEcCCCCHHHHHHHH
Confidence 78888888887 567799999999999999999999988888877666666655 578888999988899999999999
Q ss_pred HHHHHHHHhhcCCCCC----cEEEEEEeCCCC
Q 033640 79 AAISAILEKKLSVPKS----RFFIKFYDTKAS 106 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~----ri~I~f~~~~~~ 106 (114)
++|++.+++.++-+.+ .+.|.+.|++++
T Consensus 81 ~~i~~~l~~~~~~~~~~~~~~~svei~e~~~~ 112 (113)
T cd00580 81 EALLAALRAHLAPVFAKRYLSLSVEIRELDPA 112 (113)
T ss_pred HHHHHHHHHhhhhhhhccceEEEEEEEecCCC
Confidence 9999999999998877 888889998865
No 14
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=99.23 E-value=4.8e-11 Score=69.15 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=50.0
Q ss_pred EEEEEee-eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSI-GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~-~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++|+.. |..+.++|+++++.+++.+.+.||-+++.++|.|.+++++|||.+|-
T Consensus 3 ~v~Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w~~gG~ 57 (69)
T COG1942 3 FVNIKLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENWGVGGE 57 (69)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhheeEccE
Confidence 6888888 45778889999999999999999999999999999999999999984
No 15
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=99.15 E-value=4.7e-10 Score=70.45 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=67.7
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||.|++.--. .++..++.+.|.+-+|++++-|.+++++.+.+...+.-|+..++..||+|.... |+++...++++.
T Consensus 1 MPhlr~rGi~---~e~v~~~S~~LideLa~i~~~p~e~ftlE~i~s~~i~~G~~~~~~pfVEV~WF~-R~qe~qd~vA~~ 76 (108)
T PF08921_consen 1 MPHLRFRGIE---EEQVQELSKELIDELAEICGCPRENFTLEWINSTFIFDGEISEGYPFVEVLWFD-RGQEVQDKVAQA 76 (108)
T ss_dssp --EEEEESS----HHHHHHHHHHHHHHHHHHHT--GGG-EEEE-------TT-B-----EEEEEES----HHHHHHHHHH
T ss_pred CCeEEEecCC---HHHHHHHhHHHHHHHHHHHCCCcceEEEEEeceEEEEcCcccccceeEEEEEec-CCHHHHHHHHHH
Confidence 9999997533 344688999999999999999999999999885544444455677799999998 999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
|++.+.+. ....++-|.|+++++.++=-||
T Consensus 77 It~~v~~~--~g~~~V~V~F~~l~~~~YY~nG 106 (108)
T PF08921_consen 77 ITEHVKKA--NGYQDVAVIFTDLNPSNYYENG 106 (108)
T ss_dssp HHHHHHHH---TT---EEEEEE--GGG-EETT
T ss_pred HHHHHHhc--CCCCeEEEEEEEcCccccccCC
Confidence 99999877 6778999999999999988777
No 16
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=99.05 E-value=6.1e-10 Score=65.77 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=47.7
Q ss_pred EEEEEeeeC-CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccc
Q 033640 60 YGELVSIGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110 (114)
Q Consensus 60 ~v~l~~~~~-~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~ 110 (114)
+++|+..+| +|.|+++++++++++.+.+.||.+++.+.|.|++++++||+-
T Consensus 3 ~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~I~ev~~~~W~~ 54 (76)
T PRK01271 3 HIDIKCFPRELDEEQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA 54 (76)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEcCHHHhhH
Confidence 678887775 899999999999999999999999999999999999999984
No 17
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A.
Probab=99.05 E-value=2.1e-09 Score=70.10 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=90.7
Q ss_pred CCeEEEEeCC-CCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCCCC-eeEEEEEeee--CCChHHh
Q 033640 1 MPCLNISTNV-KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTEDP-AAYGELVSIG--GLNPDVN 74 (114)
Q Consensus 1 MP~i~i~tn~-~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~~p-~~~v~l~~~~--~~~~~~~ 74 (114)
||+-+|+... ..+++++++|++++++.-+.. |.|.=|+.|.+. +...++.||...+ .+.+.+..+. ..+.+.+
T Consensus 1 MPlw~I~h~~~~lt~~~K~~LA~~IT~~y~~~-glP~FyV~V~F~~~~~~~~fvGG~~~~~fvrI~i~hiaR~~~~~e~~ 79 (136)
T PF14832_consen 1 MPLWQIYHPPGTLTPEQKQALAEAITDIYTSI-GLPAFYVNVRFIEVPPGDFFVGGKPRDNFVRIVIDHIARTGPDDEQR 79 (136)
T ss_dssp --EEEEEEETTSS-HHHHHHHHHHHHHHHHHT-TTTGGG-EEEEEEE-TTSEEETTEE-SSCEEEEEEEEEEST-SHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhCC-CCCCEEEEEEEEEcCCCCeEECCcCcCceEEEEEEEEeecCCCHHHH
Confidence 9999999988 688888999999999999999 999999999996 4679999998844 3445554433 3567889
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++.+.+.+.+....+-+..+.-+...+.+...|=.||.
T Consensus 80 ~~~~~~i~~~l~p~~~~~g~~~e~~i~etp~~lw~~~G~ 118 (136)
T PF14832_consen 80 RRLLDRIDEVLKPHTADKGYDWEFHIDETPRDLWKENGL 118 (136)
T ss_dssp HHHHHHHHHHHHHHHCCGGGEEEEEEEEE-GGGEEETTE
T ss_pred HHHHHHHHHHhcccccCCCceEEEEEecCCHHHHHHCCc
Confidence 999999999999999999999999999999999999985
No 18
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=98.99 E-value=1.1e-09 Score=62.47 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=49.4
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
||+++|+.....+.+++++|.+.+++++++.+|+|++.+.|.+. +..++.+||..
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gg~~ 57 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPSSHWGVAGVP 57 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcChHHeeECCEE
Confidence 99999999888999999999999999999999999998888775 55789999853
No 19
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=98.96 E-value=2.7e-09 Score=60.28 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=49.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGT 54 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~ 54 (114)
||+++|+.....++++++++.+.+++++++.+|.|++.+.|.+. +..++..||.
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~~~~g~ 56 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTYYPQGE 56 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhheEECCE
Confidence 99999999999999999999999999999999999999999886 4567777774
No 20
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=98.95 E-value=1.6e-09 Score=61.33 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=49.7
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
||+++|+.....+.+++++|.+.+++++++.+|+|.+.+.|.+. +..++.+||..
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~~gG~~ 57 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWATGGKL 57 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHeeECCEE
Confidence 99999999988899999999999999999999999998888775 55788999865
No 21
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=98.94 E-value=2.5e-09 Score=60.35 Aligned_cols=55 Identities=16% Similarity=0.341 Sum_probs=49.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
||+++|+.....+.+++.+|.+.+++++++.+|.|.+.+.|.+. +..++.+||..
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~~~~gG~~ 57 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSKNHYAVGGKR 57 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeChhHeEECCEE
Confidence 99999999988999999999999999999999999998888775 56789999853
No 22
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=98.86 E-value=9.6e-09 Score=59.54 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=46.9
Q ss_pred CCeEEEEeCCCCCCcC-hHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVD-TSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~-~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
||+++|+.....++++ +.++.+++++++++.+|+|.+.+.|.++ +..++..||..
T Consensus 1 MP~v~Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w~~gG~~ 58 (69)
T COG1942 1 MPFVNIKLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENWGVGGES 58 (69)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhheeEccEE
Confidence 9999999997655554 8999999999999999999999999887 44677777754
No 23
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=98.82 E-value=5.1e-07 Score=58.18 Aligned_cols=111 Identities=8% Similarity=0.057 Sum_probs=87.3
Q ss_pred CCeEEEEeCCCCC-CcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCC--CeeEEEEEeeeCCChHHhHHH
Q 033640 1 MPCLNISTNVKLD-GVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED--PAAYGELVSIGGLNPDVNKKL 77 (114)
Q Consensus 1 MP~i~i~tn~~~~-~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~--p~~~v~l~~~~~~~~~~~~~~ 77 (114)
||.+.|.-+..+. ..+.+++++.+.+.+...=--|+.-|-+...+...+..|...+ ..+++.++...||+.++|+++
T Consensus 1 MPH~iiEyS~nL~~~~d~~~Ll~~l~~~l~~sglF~~~~IK~Ra~~~~~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l 80 (126)
T PRK15031 1 MPHFIAECTENIREQADLPGLFAKVNQALAATGIFPLGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEV 80 (126)
T ss_pred CCeEEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCccccEeeeeecCcEEEcCCCCCCcEEEEEeeecCCCCHHHHHHH
Confidence 9999998877765 4678999999999998843357778888888878888884444 455666667788999999999
Q ss_pred HHHHHHHHHhhcC-C---CCCcEEEEEEeCCCC-Ccccc
Q 033640 78 SAAISAILEKKLS-V---PKSRFFIKFYDTKAS-HFNFL 111 (114)
Q Consensus 78 ~~~i~~~l~~~Lg-i---~~~ri~I~f~~~~~~-~~g~~ 111 (114)
++++.+.+++.+. + +.-.+-+.+.|++++ +|-.|
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~~~LS~Ei~d~d~~~s~k~~ 119 (126)
T PRK15031 81 GEMLFALIKAHFAALMESRYLALSFEIEELHPTLNFKQN 119 (126)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEEEEEEcCCccChhhh
Confidence 9999999888874 2 346688888999888 77554
No 24
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=98.68 E-value=5.8e-08 Score=57.32 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=42.8
Q ss_pred CCeEEEEeCCC-CCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC
Q 033640 1 MPCLNISTNVK-LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS 46 (114)
Q Consensus 1 MP~i~i~tn~~-~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~ 46 (114)
||+|+|+.... .+.++++++.+++++++++++|+|++.+.|.+++-
T Consensus 1 MP~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~I~ev 47 (76)
T PRK01271 1 MPHIDIKCFPRELDEEQKAALAADITDVIIRHLNSKDSSISIALQQI 47 (76)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEc
Confidence 99999999885 78899999999999999999999999999999753
No 25
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=98.64 E-value=9.5e-08 Score=53.68 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=44.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
|+|+|+.....+++++++|.+++++++++.+|+|.+.+.|.++ +..++..||..
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w~~gG~~ 56 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENWGIGGKS 56 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCEEETTEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhheEECCEE
Confidence 8999999999988889999999999999999999998777775 56788888753
No 26
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=98.62 E-value=1.6e-07 Score=52.24 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=47.5
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGT 54 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~ 54 (114)
|+++|+.....+.+++++|.+++++++++.+|+|++.+.|.++ +..++.+||.
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~~gg~ 55 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENWGIGGE 55 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhceECCE
Confidence 8999999998888889999999999999999999998888775 5578888884
No 27
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=98.59 E-value=1.7e-07 Score=53.01 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=47.9
Q ss_pred CeEEEEeC-CCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 2 PCLNISTN-VKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn-~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
|+++|+.. ...+.+++++|.+.+++++++.+|+|++.+.|.+. +..++.+||..
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 57 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNNYGIGGEL 57 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 89999999 68888999999999999999999999998888775 45788888854
No 28
>PF02962 CHMI: 5-carboxymethyl-2-hydroxymuconate isomerase; InterPro: IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase transforms 5-carboxymethyl-2-hydroxy-muconic acid into 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid during the third step of the homoprotocatechuate catabolic pathway []. Homoprotocatechuate (HPC; 3,4-dihydroxyphenylacetate) is catabolized to Krebs cycle intermediates via extradiol (meta-) cleavage and the necessary enzymes are chromosomally encoded in a variety of bacteria []. 5-carboxymethyl-2-hydroxymuconate isomerase is probably a dimer of two identical subunits []. A comparison of the N-terminal half of the isomerase/decarboxylase sequence from the pathway (both encoded by the gene hpcE), with the second half showed significant similarity. This suggests that a duplication may have occurred to produce a bifunctional gene [].; PDB: 3E6Q_H 1OTG_B.
Probab=98.33 E-value=1.2e-05 Score=51.65 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=74.8
Q ss_pred CeEEEEeCCCCCCc-ChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC--CCeeEEEEEeeeCCChHHhHHHH
Q 033640 2 PCLNISTNVKLDGV-DTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE--DPAAYGELVSIGGLNPDVNKKLS 78 (114)
Q Consensus 2 P~i~i~tn~~~~~~-~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~--~p~~~v~l~~~~~~~~~~~~~~~ 78 (114)
|.+.|.-+...... +.+++++.+.+.+.+.=--|+.-|-+...+...+..|... +..+++++....|||.++|++++
T Consensus 1 PH~viEYS~nL~~~~d~~~ll~~l~~~~~~sglF~~~~IK~Ra~~~~~y~vgdg~~~~~FvHv~l~il~GRs~e~k~~l~ 80 (124)
T PF02962_consen 1 PHLVIEYSANLEDDVDIPALLRALHDALLASGLFPEGGIKVRAIRCDHYRVGDGQPDDAFVHVTLRILAGRSEEQKKALS 80 (124)
T ss_dssp -EEEEEEECCGCCTTTHHHHHHHHHHHHHCTTSS-GGG-EEEEEEESSEEETTSSS-EEEEEEEEEEETT--HHHHHHHH
T ss_pred CeEEEEeCCCccccCCHHHHHHHHHHHHHHcCCcChhceeeeeEecccEEEccCCCCCcEEEEEeeecCCCCHHHHHHHH
Confidence 66677555554443 6889999999999998336778888888877788887433 45666666777889999999999
Q ss_pred HHHHHHHHhhcCCCCC----cEEEEEEeCCCC
Q 033640 79 AAISAILEKKLSVPKS----RFFIKFYDTKAS 106 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~----ri~I~f~~~~~~ 106 (114)
+++.+.+++++.-..+ .+-+.+.|+++.
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~~LsvEi~E~~~~ 112 (124)
T PF02962_consen 81 EALLAVLKAHLAPLFAQRYLQLSVEIREMDPA 112 (124)
T ss_dssp HHHHHHHHHHCCCHCCHSEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHhhHhhcCCeeEEEEEEEEcCcc
Confidence 9999999999875433 455667788765
No 29
>COG3232 HpaF 5-carboxymethyl-2-hydroxymuconate isomerase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00041 Score=44.16 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred CCeEEEEe--CCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEE--EeeeCCChHHhHH
Q 033640 1 MPCLNIST--NVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGEL--VSIGGLNPDVNKK 76 (114)
Q Consensus 1 MP~i~i~t--n~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l--~~~~~~~~~~~~~ 76 (114)
||.+.+.- |+.. +.+...+++.+.+++...---|..-|-.....-..+..+-..++.+||.+ ++..|+|++++++
T Consensus 1 MPHli~EyT~Nl~~-~~~~~~L~~~vn~~l~asG~FplggIRsRa~rld~y~maD~~~~~aFvH~tl~IgaGRs~e~rq~ 79 (127)
T COG3232 1 MPHLIMEYTDNLRE-EADLPGLLEKVNAALIASGLFPLGGIRSRALRLDAYRMADGAEDDAFVHMTLKIGAGRSEEQRQE 79 (127)
T ss_pred CCceehhhhcCccc-cCCcHHHHHHHHHHHHhcCCCcccceeehhhhhhHHHhcccCCCcceEEEEEEecCCCCHHHHHH
Confidence 88887743 5553 45578999999999988777788887776655445555533333455555 5556899999999
Q ss_pred HHHHHHHHHHhhcCC
Q 033640 77 LSAAISAILEKKLSV 91 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi 91 (114)
..+++++.+..++.=
T Consensus 80 vge~Lf~~l~~~~A~ 94 (127)
T COG3232 80 VGEALFAVLTAHFAP 94 (127)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999853
No 30
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=97.65 E-value=0.00016 Score=45.73 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=43.7
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
+++|+..-..+.+++++|.+++++.+++.+|.|.++|.|.+.+. ..+.+||+.
T Consensus 60 ~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~~~~~~w~~~G~~ 114 (116)
T PTZ00397 60 FVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIEFKDCSAQNWAFNGST 114 (116)
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECChhheeEccee
Confidence 45666556667777899999999999999999999999999865 458888853
No 31
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=97.44 E-value=0.00025 Score=42.40 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=38.0
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeC--Cceeeec
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFG 52 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~m~~g 52 (114)
+|+|+.+.+.+.++|++|-+.+.+.+++.+|.+.+.|+|.+.+ ..++.||
T Consensus 31 ~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edWSFg 82 (82)
T PF14552_consen 31 IIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIVLVENPREDWSFG 82 (82)
T ss_dssp EEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccCCCC
Confidence 6889999999999999999999999999999999998888864 3566665
No 32
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A.
Probab=96.54 E-value=0.0063 Score=39.74 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=39.9
Q ss_pred EeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 64 VSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
++.|.+|+++|.+++++|+++-.+. |+|.==|.|.|+++++.++=.+|
T Consensus 8 h~~~~lt~~~K~~LA~~IT~~y~~~-glP~FyV~V~F~~~~~~~~fvGG 55 (136)
T PF14832_consen 8 HPPGTLTPEQKQALAEAITDIYTSI-GLPAFYVNVRFIEVPPGDFFVGG 55 (136)
T ss_dssp EETTSS-HHHHHHHHHHHHHHHHHT-TTTGGG-EEEEEEE-TTSEEETT
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhCC-CCCCEEEEEEEEEcCCCCeEECC
Confidence 3456799999999999999999888 99999999999999999876665
No 33
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=95.92 E-value=0.022 Score=36.03 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=38.6
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC
Q 033640 4 LNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (114)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~ 54 (114)
++|+.=-..+.++.+++.+.+++++.+.+|.|.++|.|.+.+...+-+.|+
T Consensus 61 ~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f~d~~~~G~nG~ 111 (113)
T PTZ00450 61 VRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVFYYSTKHCGWNGT 111 (113)
T ss_pred EEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEcHHHcccCcE
Confidence 444443334445567999999999999999999999999998666555554
No 34
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=95.06 E-value=0.058 Score=33.89 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=36.1
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeC--CceeeecCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGT 54 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~m~~gg~ 54 (114)
+++|+.=-..+.++.+++.+++++.+.+.+|.|.+++.|.+++ ...+-+.|+
T Consensus 58 ~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~f~d~~~~~~g~nG~ 111 (114)
T PF01187_consen 58 FVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYINFHDLPAWNVGWNGT 111 (114)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEETGGGEEETTE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEEEEECCHHHeeeCcE
Confidence 3445443334555567999999999999999999999999984 445555564
No 35
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=94.15 E-value=1.2 Score=30.79 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc-CCCCCcEE
Q 033640 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRFF 97 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L-gi~~~ri~ 97 (114)
++..+|++.+..+-|.-...|.+.+-... ........|.|-|-|+..++.+.+. ...+|..++..-. |+.+++|.
T Consensus 107 ale~EL~rtI~~i~~V~~ArVhl~~P~~~-~f~~~~~~~sASV~l~~~~g~~l~~---qv~~I~~LVa~SV~~L~~enVt 182 (193)
T TIGR02544 107 AIEQRLEQTLSQIDGVISARVHVVLPEND-NNGRPKKPSSASVFIKYRPGLNLDA---LIPKIKRLVANSIPGLDYDNVS 182 (193)
T ss_pred HHHHHHHHHHHhcCCeeeeEEEEECCCCC-cccccCCCCcEEEEEEeCCCCCcHH---HHHHHHHHHHHhcCCCCccceE
Confidence 45556777777777777778887776544 3334445778888888777765442 6677888888877 79999999
Q ss_pred EEEEeCCC
Q 033640 98 IKFYDTKA 105 (114)
Q Consensus 98 I~f~~~~~ 105 (114)
|...+.++
T Consensus 183 Vv~~~~~~ 190 (193)
T TIGR02544 183 VVLVPAEE 190 (193)
T ss_pred EEEecccc
Confidence 99988764
No 36
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=93.06 E-value=0.27 Score=30.79 Aligned_cols=43 Identities=2% Similarity=-0.008 Sum_probs=35.7
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCcc----EEEEEEeC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEA----YVMIVLKG 45 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~----~i~v~~~~ 45 (114)
+++|+.....+.+++++|.+.+.+.+++.++.+.+ .+.|.+.+
T Consensus 62 ~i~i~l~~GRs~eqK~~l~~~i~~~l~~~~~~~~~~~~~~~svei~e 108 (113)
T cd00580 62 HVTLRILAGRSEEQKQELSEALLAALRAHLAPVFAKRYLSLSVEIRE 108 (113)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhhhhhccceEEEEEEEe
Confidence 46788888899999999999999999999998765 56666654
No 37
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=91.63 E-value=0.85 Score=28.90 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=40.6
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeec
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFG 52 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g 52 (114)
++++++--..+.++-++..+.+++.+.+.|+.|.+++.+.+.+-....+|
T Consensus 59 ~~~l~Sig~v~~~~N~~~sa~l~~il~~~L~l~~~rv~I~f~dl~~~~ig 108 (115)
T KOG1759|consen 59 YASLKSIGGVGAIVNRSYSAALTEILEKELSLDPDRVYIKFYDLNAAFIG 108 (115)
T ss_pred EEEEEeccccChhHhHHHHHHHHHHHHHHhCCCCCeEEEEEecCChhHcc
Confidence 46677766677777889999999999999999999999999865444444
No 38
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=89.41 E-value=5.3 Score=27.49 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeec------------------------------------C-CCCCee
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFG------------------------------------G-TEDPAA 59 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g------------------------------------g-~~~p~~ 59 (114)
.+.+..+|.+.+.++-|...-.+||++..+....+. | ...|.+
T Consensus 59 e~~lE~~L~~iL~~I~GvG~V~VmItl~s~~e~v~a~n~~~~~~~t~E~D~~Gg~R~~~~~~~~~~~V~~~~g~~~~P~v 138 (186)
T TIGR02830 59 EKQYENELKEILEKIEGVGDVTVMVNLDSSEEKVYAKNTSKGQQTTEETDKEGGKRSVEDESDGEEVVIIRNGDQETPVV 138 (186)
T ss_pred HHHHHHHHHHHHHhccCcceeEEEEEECCCceEEEEecccccceeeeeccCCCCceeccccccCceEEEECCCCCccceE
Confidence 456788899999999999999999999876555541 2 224644
Q ss_pred EEEEE---------eeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 60 YGELV---------SIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 60 ~v~l~---------~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.=++. +-|+- +.+.-..|++.++.-|+||++||.|.
T Consensus 139 ~ke~~P~I~GVlVVAeGa~----~~~Vk~~I~~AV~~ll~v~~hkI~V~ 183 (186)
T TIGR02830 139 LKTEKPEIRGVLVVAEGAE----NPQIKYRIVEAVSRVLDVPAHKVSVL 183 (186)
T ss_pred EEEecCCceEEEEEeeCCC----CHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 33331 22333 44455566677777789999999875
No 39
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=88.18 E-value=6.1 Score=26.65 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCc----------eeeecCCC-------CCeeEEEEEe---eeCCChHHhHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSV----------PMSFGGTE-------DPAAYGELVS---IGGLNPDVNKK 76 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~----------~m~~gg~~-------~p~~~v~l~~---~~~~~~~~~~~ 76 (114)
.+++.+.+.+.+....|.+...+.|.+..+. .+...... .|.-=+.+.. ...-......+
T Consensus 85 ~~~l~~~i~~~l~~~~g~~~~~V~v~~~~~~~~~~~~I~~I~v~l~~~~~~~~~~~~~Ve~V~I~~~~~~~~~~~~~~~~ 164 (188)
T PF09581_consen 85 EEQLEKQIKALLEDKYGVEVVKVEVEIDEDEESPDFEIKEIKVTLSEEEEQKEEAVEPVEPVEIDIEKESDSSKSPEDSE 164 (188)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEEEEEcCCCccccceeEEEEEEcCCCccccccCCcccceEecccccccccccccchH
Confidence 4566777777777788999899999987652 12222110 0211233332 11233455677
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEE
Q 033640 77 LSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
....|.+.+++.+||++++|-|.
T Consensus 165 ~~~~i~~~la~~~~i~~~~I~V~ 187 (188)
T PF09581_consen 165 EEEEIKQYLADFYGISPEQIKVY 187 (188)
T ss_pred HHHHHHHHHHHHhCCCHHHeEEe
Confidence 88889999999999999999885
No 40
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=86.08 E-value=11 Score=27.23 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc-CCCCCcEEEEE
Q 033640 22 SEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRFFIKF 100 (114)
Q Consensus 22 ~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L-gi~~~ri~I~f 100 (114)
.++.+.+..+-|.-...+.+.+-.... +....+|.|-|-++..++.+.++.+. +|..++.... |++++||.|..
T Consensus 110 gELarTI~~idgV~~ArVhL~lP~~~~--~~~~~~asASV~I~~~~~~~~~~~~v---~I~~LVA~SV~gL~~enVTVvd 184 (249)
T PRK15348 110 QRIEGMLSQMEGVINAKVTIALPTYDE--GSNASPSSVAVFIKYSPQVNMEAFRV---KIKDLIEMSIPGLQYSKISILM 184 (249)
T ss_pred HHHHHHHHhCCCeeEeEEEEECCCCCc--ccCCCCccEEEEEEeCCCCChHHHHH---HHHHHHHHhcCCCCccceEEEe
Confidence 356777777777777777776654433 44445677878887777776665432 5778887777 79999999988
Q ss_pred EeC
Q 033640 101 YDT 103 (114)
Q Consensus 101 ~~~ 103 (114)
++.
T Consensus 185 ~~~ 187 (249)
T PRK15348 185 QPA 187 (249)
T ss_pred cCC
Confidence 765
No 41
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=85.67 E-value=1.6 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++..+-.-++|.+.||++++|+||++..-
T Consensus 96 K~eaI~~awe~LT~~l~l~~~rl~vTv~~~ 125 (232)
T cd00673 96 KEEAIAFAWELLTEVLGLPKDRLYVSVFEG 125 (232)
T ss_pred HHHHHHHHHHHHHhhcCCCccceEEEEeCC
Confidence 455666667889899999999999999863
No 42
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=85.53 E-value=2 Score=26.88 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=28.7
Q ss_pred eeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 66 IGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 66 ~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+.|++.+.-+++++.|.+-|++..+.|++.+.+.+.+.
T Consensus 6 ~rGi~~e~v~~~S~~LideLa~i~~~p~e~ftlE~i~s 43 (108)
T PF08921_consen 6 FRGIEEEQVQELSKELIDELAEICGCPRENFTLEWINS 43 (108)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHT--GGG-EEEE---
T ss_pred EecCCHHHHHHHhHHHHHHHHHHHCCCcceEEEEEece
Confidence 45699999999999999999999999999999987664
No 43
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=85.23 E-value=1.2 Score=26.24 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=30.5
Q ss_pred EEEEEEeCCc--eeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 38 YVMIVLKGSV--PMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 38 ~i~v~~~~~~--~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+.+.+.|+. .-.-|...++...+.|+... .+-+.| ++++++|.+.||+|+.+|.|.
T Consensus 5 ~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app-~~GkAN----~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 5 ILSVRVKPGAKRNAIVGVEGDGALKIRVTAPP-VDGKAN----KALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp EEEEECEBSSSS-EEEEE-TTT-EEEEBSTTC-CCCCHH----HHHHHHHHHHCT--TTCEEEC
T ss_pred EEEEEEEeCCCccccccccCceEEEEEEecCC-CcChhH----HHHHHHHHHHhCCCcccEEEE
Confidence 3555666652 22223233344445554333 333444 567889999999999999875
No 44
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=85.07 E-value=12 Score=30.43 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=63.0
Q ss_pred EEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHH
Q 033640 5 NISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAI 84 (114)
Q Consensus 5 ~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~ 84 (114)
.+...++....+..++-+-.-..+--++|+.-+.|.+--..++..+|||.++|. -.++..+-+.++.+|.+.
T Consensus 262 TLSiGvg~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~--------ekrTRvRaRvis~al~d~ 333 (655)
T COG3887 262 TLSIGVGYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPM--------EKRTRVRARVISTALSDI 333 (655)
T ss_pred EEEEEeccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchh--------HHhHHHHHHHHHHHHHHH
Confidence 344445555555666776666777778999999999987777888999999984 347777778888888888
Q ss_pred HHhhcCCCCCcEEEEEE
Q 033640 85 LEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 85 l~~~Lgi~~~ri~I~f~ 101 (114)
+.+ .++|+|.=|
T Consensus 334 i~e-----~d~VfImGH 345 (655)
T COG3887 334 IKE-----SDNVFIMGH 345 (655)
T ss_pred Hhh-----cCcEEEEcc
Confidence 876 788888643
No 45
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=83.91 E-value=11 Score=25.39 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=43.7
Q ss_pred EEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC-CCeeEEEEE
Q 033640 5 NISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE-DPAAYGELV 64 (114)
Q Consensus 5 ~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~-~p~~~v~l~ 64 (114)
+++...-...-.-.....++.+.++++++.|++.|.|.......|-|-|.. .-+|++.+.
T Consensus 95 niD~tii~e~PKi~p~~~~m~~~la~~L~i~~~~V~iKatT~E~lg~~Gr~egi~~~avv~ 155 (159)
T PRK00084 95 NVDITIIAQRPKMAPHIEEMRANIAEDLGIPLDDVNVKATTTEKLGFTGRGEGIAAQAVVL 155 (159)
T ss_pred EEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCCCcCCCceEEEEEEE
Confidence 444444333222456888999999999999999999999998888887776 445555554
No 46
>PRK05090 hypothetical protein; Validated
Probab=83.27 E-value=8.2 Score=23.63 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=34.2
Q ss_pred EEEEEEeCCc-eeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 38 YVMIVLKGSV-PMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 38 ~i~v~~~~~~-~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
.+.|.+.|+. .=...|-.+...-+.++... .+-..| ++++++|.+.||+++.+|.|.-
T Consensus 12 ~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApP-veGkAN----~ali~~LAk~l~v~ks~I~i~~ 70 (95)
T PRK05090 12 VLRLYIQPKASRDQIVGLHGDELKVAITAPP-VDGQAN----AHLLKFLAKQFRVAKSQVVIEK 70 (95)
T ss_pred EEEEEEeeCCCcceeccccCCEEEEEEecCC-CCChHH----HHHHHHHHHHhCCChhhEEEEe
Confidence 4566666663 22334433443334444332 333444 5678889999999999998854
No 47
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=83.14 E-value=6.7 Score=27.24 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc-CCCCCcEE
Q 033640 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRFF 97 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L-gi~~~ri~ 97 (114)
++..+|.+.+..+-|.-...+.+.+... ..+......|.|-|.|+..++.+.. +-.++|..++..-- |+.+++|.
T Consensus 115 ale~eL~~tI~~i~gV~~A~V~l~~Pe~-~~f~~~~~~~sASV~l~~~~g~~l~---~qv~~I~~LVa~sV~gL~~enVt 190 (206)
T PF01514_consen 115 ALEGELERTIESIDGVESARVHLVLPER-SVFGENQQPPSASVVLKLKPGSELS---EQVQGIQNLVASSVPGLKPENVT 190 (206)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEEEE-----BTTB----EEEEEEEEE-TTS--G---GGHHHHHHHHHHHSTT--GGGEE
T ss_pred HHHHHHHHHHHcCCCeeEEEEEEecCCc-cccccCCCCCeEEEEEEECCCCChH---HHHHHHHHHHHHhcCCCCcccEE
Confidence 3444555555555555555666655543 2333334478888888887776655 34556677766665 79999999
Q ss_pred EEEEeC
Q 033640 98 IKFYDT 103 (114)
Q Consensus 98 I~f~~~ 103 (114)
|.-.+-
T Consensus 191 VvD~~G 196 (206)
T PF01514_consen 191 VVDQNG 196 (206)
T ss_dssp EEEEET
T ss_pred EEeCCC
Confidence 987653
No 48
>PRK00647 hypothetical protein; Validated
Probab=82.33 E-value=9.2 Score=23.50 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=34.9
Q ss_pred EEEEEEeCCc-eeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 38 YVMIVLKGSV-PMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 38 ~i~v~~~~~~-~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.|.+.|+. .=.+.|-.+...-+.|+... .+-.. .++++++|.+.||||+.+|-|..=
T Consensus 7 ~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApP-vdGKA----N~ali~~LAk~l~vpks~I~Iv~G 66 (96)
T PRK00647 7 ILEVKVTPKARENKIVGFEGGILKVRVTEVP-EKGKA----NDAVIALLAKFLSLPKRDVTLIAG 66 (96)
T ss_pred EEEEEEeeCCCcceeccccCCEEEEEEecCC-CCChH----HHHHHHHHHHHhCCChhhEEEEec
Confidence 3556666652 22234444444444444333 33333 456888899999999999988643
No 49
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=82.04 E-value=13 Score=24.92 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCC-CeeEEEE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED-PAAYGEL 63 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~-p~~~v~l 63 (114)
......++.+.++++++.|+..|.|.......|-|-|..+ -+|++.+
T Consensus 104 i~p~~~~m~~~la~~L~~~~~~V~iKatT~E~lg~~Gr~egia~~av~ 151 (155)
T TIGR00151 104 LLPHIPAMRENIAELLGIPLDSVNVKATTTEKLGFTGRGEGIACQAVV 151 (155)
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCCCcCCCceEEEEEE
Confidence 4668889999999999999999999999988888877664 4444444
No 50
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=81.51 E-value=3.2 Score=27.79 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCC----------------CeeEEEEEeeeCCChHHhHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED----------------PAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~----------------p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
-+-++..+++++-...+.-.- =..+ |+....|.|.+. -..-+.++.++.. -+-.-+-.+
T Consensus 37 gDVllHAi~DAllgA~glGDI--G~~F-p~~d~~~kgadS~~lL~~~~~~v~~~g~~i~Nvd~tii~~~--PK~~P~~~a 111 (159)
T COG0245 37 GDVLLHALTDALLGAAGLGDI--GKHF-PDTDPRWKGADSRILLKEAVELVREKGYRIGNVDITIIAQR--PKLGPYREA 111 (159)
T ss_pred HHHHHHHHHHHHHHhhccCcc--hhcC-CCCCcccCCCchHHHHHHHHHHHHHhCcEEEeEEEEEEEec--CcccchHHH
Confidence 477888888888777765321 1222 223344443321 1123444555522 222345567
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+.+.+.+-|+++.+||.|..+.. +..||-|
T Consensus 112 mr~~ia~~L~i~~~~invKatT~--E~LGf~G 141 (159)
T COG0245 112 MRANIAELLGIPVDRINVKATTT--EKLGFTG 141 (159)
T ss_pred HHHHHHHHhCCCchheEEEEecc--Ccccccc
Confidence 88889999999999999999887 6777755
No 51
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=80.38 E-value=12 Score=23.73 Aligned_cols=91 Identities=21% Similarity=0.254 Sum_probs=49.1
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
.+-|+|+-+.++++-.+|+.++...+... +.+-..+.++.. ....+....+...-++++.-||.+-.-
T Consensus 2 ~vaiDtSGSis~~~l~~fl~ev~~i~~~~---~~~v~vi~~D~~v~~~~~~~~~~~~~~~~~~~GgGGTdf~p------- 71 (126)
T PF09967_consen 2 VVAIDTSGSISDEELRRFLSEVAGILRRF---PAEVHVIQFDAEVQDVQVFRSLEDELRDIKLKGGGGTDFRP------- 71 (126)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhC---CCCEEEEEECCEeeeeeEEecccccccccccCCCCCCcchH-------
Confidence 36689999998776777777776654444 333222233221 112222212222334445555554433
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKA 105 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~ 105 (114)
.++++.++- +...+.|.|+|...
T Consensus 72 vf~~~~~~~--~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 72 VFEYLEENR--PRPSVVIYFTDGEG 94 (126)
T ss_pred HHHHHHhcC--CCCCEEEEEeCCCC
Confidence 555665542 56788889999644
No 52
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=80.37 E-value=6.7 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASH 107 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~ 107 (114)
+.+.+.+.|+++++++.++|.+-+...
T Consensus 26 L~~ki~~kLkl~~e~i~LsYkde~s~~ 52 (80)
T cd06406 26 LLQKISSKLELPAEHITLSYKSEASGE 52 (80)
T ss_pred HHHHHHHHhCCCchhcEEEeccCCCCC
Confidence 888899999999999999999876543
No 53
>PRK01530 hypothetical protein; Reviewed
Probab=79.45 E-value=2.7 Score=26.24 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 77 LSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
-.++++++|.+.|||++.+|-|.-
T Consensus 54 AN~ali~~LAk~l~v~ks~I~Ivs 77 (105)
T PRK01530 54 ANEEIINYLAKEWKLSRSNIEIIK 77 (105)
T ss_pred HHHHHHHHHHHHhCCChhhEEEEe
Confidence 345688899999999999998853
No 54
>PRK01310 hypothetical protein; Validated
Probab=78.77 E-value=3.3 Score=25.81 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=34.1
Q ss_pred EEEEEEeCCcee-eecCCC-C----CeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 38 YVMIVLKGSVPM-SFGGTE-D----PAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 38 ~i~v~~~~~~~m-~~gg~~-~----p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
.+.|.+.|+..- .+.|.. + ...-+.|+... .+-..| ++++++|.+.|||++.+|-|.-
T Consensus 13 ~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apP-v~GkAN----~ali~~LA~~l~v~ks~I~iv~ 76 (104)
T PRK01310 13 RLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVP-EGGEAN----RALIELLAKALGVPKSSVRLLS 76 (104)
T ss_pred EEEEEEeeCCCcceeccccccCCCccEEEEEEecCC-CCChHH----HHHHHHHHHHhCCChhhEEEEe
Confidence 577777776322 234432 2 12233344332 333444 5678888899999999998853
No 55
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=78.28 E-value=6 Score=23.80 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCC--ChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGL--NPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 23 ~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~--~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
.+.+++.+..+....|..+.-.. ++.++-...+++. .+. +.+...++.+.|.+.+++.||+.+
T Consensus 8 ~Ie~vl~~~~~~~~~y~i~v~~~------~~~D~l~v~vE~~--~~~~~~~~~~~~l~~~i~~~lk~~lgv~~ 72 (96)
T PF14535_consen 8 QIEEVLREFPEVSPEYQIVVTRE------GGLDELTVRVELR--PGFSDDAEDLEALAERIAERLKERLGVRP 72 (96)
T ss_dssp HHHHHHCTSTTEEEEEEEEEEEE------TTEEEEEEEEEES--TTCCTTHHHHHHHHHHHHHHHHHHHSS-E
T ss_pred HHHHHHHhCcCCCCcEEEEEEcC------CCCcEEEEEEEEC--CccCcchHHHHHHHHHHHHHHHhhcCceE
Confidence 45566666666544554443322 2234443444443 333 346789999999999999999986
No 56
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=78.03 E-value=21 Score=28.65 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhh-cCCCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKK-LSVPK 93 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~-Lgi~~ 93 (114)
..++..+|.+.+..+=+....++.+.+-....+..+ ...|.|-|.|+.-.| +++++-.. |..+++.. -|+++
T Consensus 133 ~RAlegELartI~~l~~V~~ArVhl~lPk~s~Fv~~-q~~psASV~l~l~pG~~l~~~qV~a----I~~LVs~aVpgL~~ 207 (545)
T COG1766 133 QRALEGELARTIVAIDGVKAARVHLVLPKDSLFVRD-QQPPSASVVLKLKPGRNLSREQVRA----IVHLVSSAVPGLKP 207 (545)
T ss_pred HHHHHHHHHHHHHHhhchhheeEEEecCCcchhhcc-cCCCceEEEEEccCCCCCCHHHHHH----HHHHHHhhcCCCCc
Confidence 456777888888888888888888888776656555 779999999988777 55666544 44554443 48999
Q ss_pred CcEEEEEE
Q 033640 94 SRFFIKFY 101 (114)
Q Consensus 94 ~ri~I~f~ 101 (114)
++|.|.=+
T Consensus 208 enVtVvDq 215 (545)
T COG1766 208 ENVTVVDQ 215 (545)
T ss_pred cceEEecC
Confidence 99988643
No 57
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=76.62 E-value=21 Score=24.21 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHHHh
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEK 87 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l~~ 87 (114)
...|.+.+...+.+.++.+....-- . ........+.-|++++|+-.+.. .+++..++++++|++-|.+
T Consensus 114 s~~lA~~i~~~l~~~~~~~~rg~~~--~-~~l~vLr~t~~PavLvE~gFisn~~D~~~l~~~~~~~~~A~aia~gI~~ 188 (189)
T TIGR02883 114 NKRLAKFIQDELRRNLDNTNRRAKK--I-NDYYLLRNAEVPGVIVECGFLSNPEEAELLKDEDYQQKIAAAIYKGVLR 188 (189)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCccc--c-CCEEEEcCCCCCEEEEEecccCCHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4678888888888887755443211 1 23445556679999999976642 2455567788888887643
No 58
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=75.78 E-value=21 Score=23.84 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCC-CeeEE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED-PAAYG 61 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~-p~~~v 61 (114)
...+..++.+.++++++.+.+.|.|.......|-|-|..+ -++++
T Consensus 104 i~p~~~~m~~~ls~~L~~~~~~V~iKatT~E~lg~~Gr~egia~~a 149 (153)
T cd00554 104 ISPYREAMRANLAELLGIPPSRVNIKATTTEGLGFTGRGEGIAAQA 149 (153)
T ss_pred chHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCCcCCCceEEEE
Confidence 4678889999999999999999999999988888877664 34443
No 59
>PF13222 DUF4030: Protein of unknown function (DUF4030)
Probab=75.31 E-value=5.6 Score=25.98 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=31.1
Q ss_pred CC-eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCcc
Q 033640 1 MP-CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEA 37 (114)
Q Consensus 1 MP-~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~ 37 (114)
|| ++-|+|..+.++...++|.+.+-+.+-+.+..++-
T Consensus 85 qp~~v~I~t~in~~d~~AKE~g~kiEkei~~~lkt~ev 122 (142)
T PF13222_consen 85 QPVTVTIKTKINSSDPGAKEFGKKIEKEINEVLKTEEV 122 (142)
T ss_pred CcEEEEEeccccccccchHHHHHHHHHHHHHHHccHHH
Confidence 68 78899877777776789999999999999988764
No 60
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=74.89 E-value=21 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCC-CeeEEEEE
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED-PAAYGELV 64 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~-p~~~v~l~ 64 (114)
.-....+.+.+|+.|+.|++.|.|.......+-|=|..+ =+++..+.
T Consensus 106 ~P~~~amr~~ia~~L~i~~~~invKatT~E~LGf~Gr~eGia~~avvl 153 (159)
T COG0245 106 GPYREAMRANIAELLGIPVDRINVKATTTEKLGFTGRGEGIACQAVVL 153 (159)
T ss_pred cchHHHHHHHHHHHhCCCchheEEEEeccCccccccccCceEEEEEEE
Confidence 456778999999999999999999999999998887764 34555444
No 61
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=74.89 E-value=15 Score=22.07 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEEeCCceeeecCCC-CCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC
Q 033640 41 IVLKGSVPMSFGGTE-DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 41 v~~~~~~~m~~gg~~-~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
+.-..+..+-.||+. +-+=++.-.-+..++++++.+|.+.+.+.+..-|..
T Consensus 4 ~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~~~~~~~~eF~k~i~~~~d~~l~~ 55 (86)
T PF11090_consen 4 TIEHKGRPLAIGGNNGGCLWFVTTNKVKSLTKKERREFRKLIKEYLDKMLKQ 55 (86)
T ss_pred EEecCCeEEEEccccCCeEEEEECcHHhhcCHhhhHHHHHHHHHHHHHHHHH
Confidence 334466789999998 555555555566688999999999999877766654
No 62
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.82 E-value=5.3 Score=33.21 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=28.1
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
++.=-|++.++---++|.+.+|||++|.||+|..=
T Consensus 97 FGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~G 131 (895)
T KOG0188|consen 97 FGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGG 131 (895)
T ss_pred cchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecC
Confidence 33344666677777899999999999999999874
No 63
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=74.52 E-value=32 Score=27.65 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhhc-CCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKKL-SVPKS 94 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~L-gi~~~ 94 (114)
.++..+|.+.+..+=+.....|.+.+-....+ ......|.|-|.|+..+| +++++ .++|..++...- |++++
T Consensus 134 rALegELartI~~l~~V~~ArVhLalPe~s~F-~~~~~~~tASV~l~l~~g~~L~~~Q----V~aI~~LVA~SVpgL~~e 208 (555)
T TIGR00206 134 RAIEGELSRTIEALDPVKAASVHLAMPKDALF-VEEQEPPSASVRLTLRPGSDLDTNQ----IEGLVHLISYAVPGLESD 208 (555)
T ss_pred HHHHHHHHHHHHhcCCeeeEEEEEECCCCCcc-ccCCCCCCEEEEEecCCCCCCCHHH----HHHHHHHHHhhcCCCCcc
Confidence 45666778888888788777888877664444 344568888888887765 56666 455666665554 89999
Q ss_pred cEEEE
Q 033640 95 RFFIK 99 (114)
Q Consensus 95 ri~I~ 99 (114)
+|.|.
T Consensus 209 nVtVv 213 (555)
T TIGR00206 209 NIAIV 213 (555)
T ss_pred ceEEE
Confidence 99875
No 64
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=74.48 E-value=35 Score=27.34 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhhc-CCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKKL-SVPKS 94 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~L-gi~~~ 94 (114)
.++..+|.+.+..+-+.-..+|.+.+-....+ ......|.|-|.|+..+| +++++ .++|..++...- |++++
T Consensus 134 rAlegELartI~~i~~V~~ArVhl~lP~~s~F-~~~~~~~tASV~l~l~~g~~L~~~q----V~aI~~LVA~sVpgL~~e 208 (542)
T PRK06007 134 RALEGELARTIESLDGVKAARVHLALPKESVF-VREQQPPSASVVLTLKPGRALDPEQ----VKAIVHLVASAVPGLKPE 208 (542)
T ss_pred HHHHHHHHHHHHhcCCcceeEEEEECCCCccc-cccCCCCcEEEEEeccCCCCCCHHH----HHHHHHHHHhccCCCCcc
Confidence 45666777888888777777787777664444 354557888888887765 45555 455666665554 89999
Q ss_pred cEEEE
Q 033640 95 RFFIK 99 (114)
Q Consensus 95 ri~I~ 99 (114)
+|.|.
T Consensus 209 nVtVv 213 (542)
T PRK06007 209 NVTIV 213 (542)
T ss_pred ceEEE
Confidence 99886
No 65
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=72.56 E-value=18 Score=23.71 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILE 86 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l~ 86 (114)
.+.|.+.+.+.+.+.++.+.+.+.. .++ ....-.+.-|++++|+-.+.. .++...++++++|.+-|.
T Consensus 101 s~~lA~~i~~~l~~~~~~~~rgv~~--~~~-~~~l~~~~~pavliE~gfi~n~~D~~~l~~~~~~~~~A~ai~~gI~ 174 (175)
T PF01520_consen 101 SKKLAKSIQKELSKRTGLPNRGVKE--RNN-LYVLRNTNMPAVLIELGFIDNPEDAKKLNDPKFQQKIAEAIAKGIA 174 (175)
T ss_dssp HHHHHHHHHHHHHHCHTTEEEEEEE--ECT--HHHHCCSSCEEEEEEEETTSHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhccccCCccc--chH-HHHHhcCCCCEEEEEeccCCCHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 5788999999999999877444322 221 122234678999999987643 235556678888887764
No 66
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=72.10 E-value=15 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.9
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCC-CCcEEEEEEeCCCC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVP-KSRFFIKFYDTKAS 106 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~-~~ri~I~f~~~~~~ 106 (114)
-+++-++++-+.-...|++++|.. |..+-|.+++.++.
T Consensus 26 ~DpaFr~eLl~DPk~~L~e~Fgy~~P~~v~l~v~E~~~d 64 (114)
T TIGR03795 26 HSPEFKDELLADPVDALEKYFDYRCPWILDLKVTENSSD 64 (114)
T ss_pred CCHHHHHHHHHCHHHHHHHHhCCCCCCceEEEEEecCCC
Confidence 578889999999999999999986 88899999999866
No 67
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=71.28 E-value=41 Score=27.42 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=59.1
Q ss_pred EEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-----CChHHhHHHHHH
Q 033640 6 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-----LNPDVNKKLSAA 80 (114)
Q Consensus 6 i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-----~~~~~~~~~~~~ 80 (114)
|.+|..-+.- -+.+-.++.+.+|+.++.+.+.|-|+-..-. .-|-.-.+.-|.|. --.+..++.-+.
T Consensus 477 i~lNHGGTEM-GQGL~tKvaQVvA~~fqvd~~rVkitaT~T~-------KVpNTSaTAASSGsDLNGmAa~dAa~qIk~R 548 (781)
T COG4631 477 IHLNHGGTEM-GQGLYTKVAQVVAEEFQVDIDRVKITATTTD-------KVPNTSATAASSGSDLNGMAAQDAARQIKER 548 (781)
T ss_pred EEEcCCCccc-ccchhHHHHHHHHHHhCcccceEEEeccccC-------CCCCCccccccccCCcccHHHHHHHHHHHHH
Confidence 5566665543 5788999999999999999999888764311 12222223333432 236667888889
Q ss_pred HHHHHHhhcCCCCCcEEE
Q 033640 81 ISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I 98 (114)
+.++-.++++++.++|..
T Consensus 549 Lv~fAA~~~~V~~~~v~F 566 (781)
T COG4631 549 LVAFAAEHWGVPEEDVAF 566 (781)
T ss_pred HHHHHHHhcCCCHHHeEe
Confidence 999999999999877643
No 68
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=70.43 E-value=11 Score=25.20 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC---------------CCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT---------------EDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~---------------~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
-+-++..+++++-.+.+.+.=- ..+.+...-+-|-+ .=-..-+.++.+.... +-..+..++
T Consensus 36 gDVl~HAi~DAlLGA~glgDIG--~~Fpdtd~~~k~~~S~~lL~~~~~~~~~~g~~i~niD~tii~e~P--Ki~p~~~~m 111 (155)
T TIGR00151 36 GDVLLHALTDALLGALGLGDIG--KHFPDTDPRWKGADSRVLLRHAVALIKEKGYRIGNVDITIIAQRP--KLLPHIPAM 111 (155)
T ss_pred HHHHHHHHHHHHHHHccCCcCc--ccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCC--cchHHHHHH
Confidence 4778888888888888765421 11222111111100 0012334555554322 223466778
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
.+.+.+-|+++.++|.|..+-. +..|+-|
T Consensus 112 ~~~la~~L~~~~~~V~iKatT~--E~lg~~G 140 (155)
T TIGR00151 112 RENIAELLGIPLDSVNVKATTT--EKLGFTG 140 (155)
T ss_pred HHHHHHHhCCCcceEEEEEecC--CCCCCCc
Confidence 8899999999999999999876 5566544
No 69
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=69.84 E-value=5.8 Score=28.70 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccccC
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL 114 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~~ 114 (114)
..+.+++.+.+ +++|+++++|+.+++.. =-.|++.|.
T Consensus 221 ~~m~~~v~~~L-~~~Gv~~~~i~~~l~~~--m~cg~g~c~ 257 (289)
T PRK08345 221 PVMYKFVFKEL-INRGYRPERIYVTLERR--MRCGIGKCG 257 (289)
T ss_pred HHHHHHHHHHH-HHcCCCHHHEEEEehhc--ccccCcccC
Confidence 45777777877 67899999999999554 267777763
No 70
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=69.56 E-value=11 Score=31.33 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+-...-+++.+- +--.....|.--....+++-++|.+...+.|+++++.+
T Consensus 490 GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~--~Sr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~ 567 (768)
T TIGR03196 490 GQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSS--ASRGTSMSGGAIQGACAAFAAQLKARAAETAGLPAEVV 567 (768)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCc--hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhE
Confidence 4678889999999999999999999876533333332110 00111112222244556666666666677778765543
No 71
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=69.54 E-value=17 Score=23.39 Aligned_cols=82 Identities=7% Similarity=0.137 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhCCCc----------cEEEEEEeCCce-eeec----C----CCCCeeEEEEEeeeC-CChHHhHHH
Q 033640 18 SSILSEATSTVANIIGKPE----------AYVMIVLKGSVP-MSFG----G----TEDPAAYGELVSIGG-LNPDVNKKL 77 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~----------~~i~v~~~~~~~-m~~g----g----~~~p~~~v~l~~~~~-~~~~~~~~~ 77 (114)
.+...++...+.++..+-. ....|=++++++ ..++ | +.+--.+..|...+. ++..+++++
T Consensus 7 ~~~~~~i~~~i~~l~S~~d~~~~~~~~e~G~~wvWi~DN~~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~kE~~ 86 (132)
T PF14468_consen 7 KEYADRINEYISELYSKKDFLNDDYDREFGNAWVWIHDNQSEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKKEAM 86 (132)
T ss_pred HHHHHHHHHHHHHHhccchhhcccchhhcCceEEEEecCcCHHHHHHHHcCceeeccCceeeeecccccCCCchHHHHHH
Confidence 4566667777766665432 134455555532 2222 1 223445667766666 678889999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++.+++.+.+++||...+.-|.
T Consensus 87 ak~vA~~L~~rF~vea~yfSV~ 108 (132)
T PF14468_consen 87 AKHVAGWLRHRFGVEAGYFSVL 108 (132)
T ss_pred HHHHHHHHHHHhCcceeEEEec
Confidence 9999999999999988766553
No 72
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=69.46 E-value=7.1 Score=28.24 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=39.3
Q ss_pred CCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 34 KPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 34 kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
+-.+.|-...+.+++=++|..+ -+-|+-++ ..+-+++-++++.+-+.+-++||||
T Consensus 68 ~AaelIDM~~H~GeHpRmGA~D-ViPfvPl~---d~tteecveiske~gkrvgeelgiP 122 (302)
T COG3643 68 KAAELIDMRNHKGEHPRMGAAD-VIPFVPLK---DTTTEECVEISKELGKRVGEELGIP 122 (302)
T ss_pred HHHHhhchhccCCCCCCCCccc-eeceeecc---cccHHHHHHHHHHHHHHhhHhhCCc
Confidence 3334455556677777777544 33355544 4667999999999999999999998
No 73
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.16 E-value=6.4 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 76 KLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+.+++.+.+..+.||+++||||.
T Consensus 126 gflr~lva~l~~~~gidp~RVyvt 149 (312)
T COG3509 126 GFLRALVAKLVNEYGIDPARVYVT 149 (312)
T ss_pred HHHHHHHHHHHHhcCcCcceEEEE
Confidence 456667777889999999999996
No 74
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=69.12 E-value=18 Score=24.26 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 4 LNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.++++.+-...........++.+.+|++++.|.+.|.|....+..+-|-|..+-
T Consensus 92 ~niD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E~lg~~Gr~eg 145 (157)
T PF02542_consen 92 VNIDITIIAERPKISPYRPAMRENLAKLLGIPPDRVNIKATTTEGLGFIGRGEG 145 (157)
T ss_dssp EEEEEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGEEEEEE-TTTSHHHHTTSE
T ss_pred EEEEEEEEcCCCccHHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcccCCCc
Confidence 344444433333346778899999999999999999999998888877776643
No 75
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=69.09 E-value=12 Score=25.17 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC---------------CCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT---------------EDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~---------------~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
-+-++..+++++-.+.+.+.= =..+.+...-+-|-+ .=-..-+.++.+.... +-..+..++
T Consensus 39 gDVl~HAi~DAlLGA~glgDI--G~~Fp~td~~~kg~~S~~lL~~~~~~~~~~g~~i~niD~tii~e~P--Ki~p~~~~m 114 (159)
T PRK00084 39 GDVLLHAICDALLGAAALGDI--GKHFPDTDPAFKGADSRVLLREVARLLRAKGYRIGNVDITIIAQRP--KMAPHIEEM 114 (159)
T ss_pred HHHHHHHHHHHHHHHccCCch--hhhCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCC--cchHHHHHH
Confidence 477888888888888875432 112222111111100 0012345555554322 223366778
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
.+.+++-|+++.+||.|..+-. +..|+-|
T Consensus 115 ~~~la~~L~i~~~~V~iKatT~--E~lg~~G 143 (159)
T PRK00084 115 RANIAEDLGIPLDDVNVKATTT--EKLGFTG 143 (159)
T ss_pred HHHHHHHhCCCcceEEEEEecC--CCCCCCc
Confidence 8899999999999999999877 5666554
No 76
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=68.92 E-value=5.9 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++-.+-.-+++.+.||+|++|+|+++..-
T Consensus 94 K~eai~~awe~lT~~~~i~~~rl~vTv~~~ 123 (851)
T TIGR00344 94 KEEAIAFAWELLTSVLGLDKERLYVTVYED 123 (851)
T ss_pred HHHHHHHHHHHHhhhcCCChHHEEEEEcCC
Confidence 556666677889999999999999988754
No 77
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=68.86 E-value=24 Score=22.19 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCce-eeecCCCCCeeEEEEEeeeCCC--hH----HhHHHHHHHHHHHHhhc
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVP-MSFGGTEDPAAYGELVSIGGLN--PD----VNKKLSAAISAILEKKL 89 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~-m~~gg~~~p~~~v~l~~~~~~~--~~----~~~~~~~~i~~~l~~~L 89 (114)
..+|...+++..-+.+||.+..+-+.+.++-- ..+-|.-.|+=..=+..-++.. .. ..+.+...+.+.+++.+
T Consensus 9 E~~is~~i~k~~ke~~GkGP~~i~~~i~~~~iiv~l~g~LTp~Ek~L~~~~~g~~lv~~~R~~l~~~~~~~l~~~ie~i~ 88 (118)
T PF10057_consen 9 EQEISNAIRKFYKEYFGKGPKSIKVTISDDMIIVRLEGFLTPAEKFLAETEEGRELVKQVRTSLIESLKPELKEMIEEIL 88 (118)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEECCEEEEEEECCCCHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677778888889999999999999987632 2222444443222222222221 11 12333444566666666
Q ss_pred CCCCCcE
Q 033640 90 SVPKSRF 96 (114)
Q Consensus 90 gi~~~ri 96 (114)
|++-..+
T Consensus 89 g~~V~~l 95 (118)
T PF10057_consen 89 GVKVISL 95 (118)
T ss_pred CCeeEEE
Confidence 7654333
No 78
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=68.81 E-value=24 Score=21.49 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCc--
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSR-- 95 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~r-- 95 (114)
+++.-+++-.+|+.-+..++.+.|.+..+...-|+ .++..-|..-.-.-..+..+|-.++.++++++|.+
T Consensus 8 qeIiNAvCl~~A~~~~i~P~dVeVeL~yDdd~GFs--------AEv~~ngr~q~l~~~nlieAIr~~l~~~~~~~p~~~~ 79 (91)
T PF10850_consen 8 QEIINAVCLHIAERKGIQPEDVEVELMYDDDYGFS--------AEVWVNGRSQYLIEANLIEAIRQYLEEEYNMDPFRAG 79 (91)
T ss_pred HHHHHHHHHHHHHhcCCCcccEEEEEEEecCCCee--------EEEEECCeEEEEchhhHHHHHHHHHHHHhCCCcchhh
Confidence 67788899999999998778788877766555444 34443332222224568899999999999999876
Q ss_pred EEEEEEe
Q 033640 96 FFIKFYD 102 (114)
Q Consensus 96 i~I~f~~ 102 (114)
+-+.+.|
T Consensus 80 i~L~ldd 86 (91)
T PF10850_consen 80 IELELDD 86 (91)
T ss_pred eEEEEcc
Confidence 4444443
No 79
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=68.72 E-value=13 Score=24.83 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC-------------CC--CeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT-------------ED--PAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~-------------~~--p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
-+-++..+++++-.+.+.+.= =..+.+...-+-|-+ .. -..-+.++.+... |.- ..+..++
T Consensus 36 gDVl~HAl~DAlLGA~glgDI--G~~Fp~~d~~~k~~~S~~lL~~~~~~~~~~g~~i~niD~tii~e~-PKi-~p~~~~m 111 (153)
T cd00554 36 GDVLLHALTDALLGAAGLGDI--GEHFPDTDPKWKGADSRILLEEALKLIREKGYEIVNIDITIIAER-PKI-SPYREAM 111 (153)
T ss_pred HHHHHHHHHHHHHHHccCCcc--cccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEecC-Ccc-hHHHHHH
Confidence 477888888888888876542 112222111111100 01 1234555555543 222 3467789
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
.+.+++.|+++.++|.|..+-. +..|+-|
T Consensus 112 ~~~ls~~L~~~~~~V~iKatT~--E~lg~~G 140 (153)
T cd00554 112 RANLAELLGIPPSRVNIKATTT--EGLGFTG 140 (153)
T ss_pred HHHHHHHhCCCCceEEEEEecC--CCCCCCc
Confidence 9999999999999999999877 5666643
No 80
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=68.49 E-value=60 Score=26.16 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhhc-CCCCCc
Q 033640 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKKL-SVPKSR 95 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~L-gi~~~r 95 (114)
++..+|.+.+..+-+.-..+|.+.+-....+.......|.|-|.|+..+| +++++-+ +|..++...- |+++++
T Consensus 138 ALEgELaRTI~~l~~V~~ARVhLalPe~s~F~~~~~~~~sASV~l~l~~g~~Ls~~QV~----aI~~LVA~SVpgL~pen 213 (552)
T PRK07193 138 SLEGELAQSIMALDAVESARVHLAIPKSSSFVRQDPELPSASVVLRLKPGQKLSPEQVE----AIVNLVAGSVPGLKPAN 213 (552)
T ss_pred HHHHHHHHHHHhcCCceeEEEEEEcCCCCcccccCCCCCCeEEEEecCCCCCCCHHHHH----HHHHHHHHhcCCCCccc
Confidence 44556666666666776667777766554444444467888888887654 6666654 4555555444 899999
Q ss_pred EEEE
Q 033640 96 FFIK 99 (114)
Q Consensus 96 i~I~ 99 (114)
|.|.
T Consensus 214 VtVv 217 (552)
T PRK07193 214 VSVV 217 (552)
T ss_pred eEEE
Confidence 9886
No 81
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=68.43 E-value=13 Score=23.44 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=27.0
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 72 DVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 72 ~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.-++++..+..+..+.+|=.|+++.+.|.+
T Consensus 7 ~lE~~is~~i~k~~ke~~GkGP~~i~~~i~~ 37 (118)
T PF10057_consen 7 ELEQEISNAIRKFYKEYFGKGPKSIKVTISD 37 (118)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 4457788999999999999999999999865
No 82
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=68.31 E-value=6.7 Score=31.39 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=26.0
Q ss_pred EeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 033640 64 VSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKA 105 (114)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~ 105 (114)
.|+|..- |++-.+-.-+++.+.||+|++|+|+++..=+.
T Consensus 92 ~sfgdYf---K~eai~~awe~lt~~l~i~~~~l~vt~~~~d~ 130 (552)
T PF01411_consen 92 FSFGDYF---KEEAIEYAWEFLTEVLGIPPDRLYVTVFEWDG 130 (552)
T ss_dssp EEECSS----HHHHHHHHHHHHHCTTT--GGGEEEEEECCEC
T ss_pred ccccccc---HHHHHHHHHHHHHhhcCCChHhEEEEEeCCch
Confidence 3566432 44455556688889999999999999986543
No 83
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=68.19 E-value=6.7 Score=26.28 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=31.6
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
-+.++.+.... +-..+..++.+.+++.|++++++|.|..+-. +..|+-|
T Consensus 93 niD~tii~e~P--Ki~p~~~~m~~~la~~L~~~~~~V~iKatT~--E~lg~~G 141 (157)
T PF02542_consen 93 NIDITIIAERP--KISPYRPAMRENLAKLLGIPPDRVNIKATTT--EGLGFIG 141 (157)
T ss_dssp EEEEEEESSSS--TTGGGHHHHHHHHHHHHTS-GGGEEEEEE-T--TTSHHHH
T ss_pred EEEEEEEcCCC--ccHHHHHHHHHHHHHHhCCCcceEEEEEecC--CCCCccc
Confidence 34555555322 1233566788889999999999999998876 4566544
No 84
>PLN02900 alanyl-tRNA synthetase
Probab=66.39 E-value=7.2 Score=33.24 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|++-..---+++.+.||+|++|+||++.
T Consensus 117 K~eaI~~awe~lT~~l~i~~~~l~vTv~ 144 (936)
T PLN02900 117 KKEAIGWAWELLTKVYGLPADRLYATYF 144 (936)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHEEEEEe
Confidence 4556666678898999999999999966
No 85
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=66.30 E-value=9.8 Score=23.29 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=48.9
Q ss_pred CcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 14 GVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 14 ~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
..++.+|...+++.+++.......|+.-... ...+|..++-|...+ +..++..++|.....+.+ +
T Consensus 14 ~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~--------~~~~~~~li~vd~~~----~~~~~~~~~i~~~~~~~~---~ 78 (108)
T PF14581_consen 14 EEEPTDLLAALSEYFKQHKNVRAAYLALMQD--------EDEQPSLLIGVDFDG----EDIEEIFQEIGRAARPYL---P 78 (108)
T ss_pred ccCHHHHHHHHHHHHhhCccHHHhHHHHhhc--------cCCCceEEEEEeccC----hhHHHHHHHHHHHhhhcC---C
Confidence 4568999999999888877766666543333 346787777777666 555666777777665544 3
Q ss_pred CcEEEEEEeCC
Q 033640 94 SRFFIKFYDTK 104 (114)
Q Consensus 94 ~ri~I~f~~~~ 104 (114)
+..+|.|..+.
T Consensus 79 ~~~~vd~~~~~ 89 (108)
T PF14581_consen 79 DGWPVDFVLLD 89 (108)
T ss_pred CCceEEEEEcc
Confidence 44455555443
No 86
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=65.66 E-value=6.6 Score=33.14 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++-..-.-+++.+.||+|++|+||++..-
T Consensus 99 K~eai~~awe~lt~~~~i~~~~l~vt~~~~ 128 (865)
T PRK00252 99 KEEAIEWAWELLTSVLGLPKEKLYVTVYED 128 (865)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHEEEEEcCC
Confidence 455566667888889999999999988753
No 87
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=64.89 E-value=12 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=25.5
Q ss_pred CcChHHHHHHHHHHHHHHhCCCccEEEEEE
Q 033640 14 GVDTSSILSEATSTVANIIGKPEAYVMIVL 43 (114)
Q Consensus 14 ~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~ 43 (114)
.........++.+.+|+.+|.|++.|.|.|
T Consensus 159 ~~~~~~~~~~i~~~la~~~~i~~~~I~V~~ 188 (188)
T PF09581_consen 159 SPEDSEEEEEIKQYLADFYGISPEQIKVYV 188 (188)
T ss_pred cccchHHHHHHHHHHHHHhCCCHHHeEEeC
Confidence 334678899999999999999999998864
No 88
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=64.71 E-value=13 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCC-Cc
Q 033640 80 AISAILEKKLSVPKSRFFIKFYDTKAS-HF 108 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~~~~~-~~ 108 (114)
.+.+.+.+.|+.+++++.++|.+...+ .|
T Consensus 21 ~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~ 50 (78)
T cd06411 21 SLRALLSQALPQQAQRGQLSYRAPGEDGHW 50 (78)
T ss_pred HHHHHHHHHhcCChhhcEEEecCCCCCccE
Confidence 378889999999999999999998776 55
No 89
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=64.28 E-value=8.1 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..+.+.+.+.+.++.+|+++|||+.
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~ 102 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVT 102 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeE
Confidence 3466777888889999999999985
No 90
>PRK05934 type III secretion system protein; Validated
Probab=64.11 E-value=60 Score=24.45 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhhc-CCCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKKL-SVPK 93 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~L-gi~~ 93 (114)
..++..++.+.+...-+....+|.+.+-... ....+|.|-|.++..+| +++++ .++|..++.... |.++
T Consensus 69 ~~ALEGELaRTIesld~VesARVHLAlPe~s----~~~~~pTASVvLtL~~G~tLs~~Q----V~gIvnLVAsSVpGLtp 140 (341)
T PRK05934 69 SLAKKEQLEKDLTMFHPVAQATVALSLETED----DPMSPAEISVILSLPKAETLSPSL----LHSITDYLTSSVPGLTK 140 (341)
T ss_pred HHHHHHHHHHHHHcccCcceeEEEEeCCCCC----ccCCCCceEEEEecCCCCcCCHHH----HHHHHHHHHhcCCCCCc
Confidence 4567778888888888888888888776543 23457888888887765 56555 455666666665 7899
Q ss_pred CcEEEE
Q 033640 94 SRFFIK 99 (114)
Q Consensus 94 ~ri~I~ 99 (114)
++|.|.
T Consensus 141 EnVTVV 146 (341)
T PRK05934 141 EHITLS 146 (341)
T ss_pred cCeEEE
Confidence 998875
No 91
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=62.83 E-value=64 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=30.4
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.++.+.-.+..+.+.+.+.+.+|+..-||.|.=-+
T Consensus 175 ~~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLN 210 (332)
T COG1995 175 DAITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLN 210 (332)
T ss_pred hhhCHHHHHHHHHHHHHHHHHhhCCCCcceEEeccC
Confidence 457899999999999999999999999999886433
No 92
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=61.87 E-value=40 Score=22.34 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCccEEEEEEeCCceeeec---CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHh
Q 033640 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFG---GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEK 87 (114)
Q Consensus 23 ~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g---g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~ 87 (114)
.+..+...++|+-+....-.+..+..+++. ++.-..-|+.... ..++|++..+++..|++.+..
T Consensus 21 DI~~l~~~L~~~~P~~tifsid~~g~f~iDF~Yd~~~AS~YL~~~~-~~i~pde~~~~~~~IA~eLT~ 87 (147)
T PF04787_consen 21 DIMVLKRHLLNKHPNDTIFSIDEDGKFFIDFEYDDCLASDYLNMKT-RPITPDEYKKYSSAIAKELTN 87 (147)
T ss_pred HHHHHHHHHhcCCCcceeeeEcCCCCEEEEeeeCCchHhhhhcCCC-ccCCHHHHHHHHHHHHHHHHH
Confidence 567788889997666555556554433333 3444445555553 348999999999999988743
No 93
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=61.70 E-value=60 Score=24.32 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEee-----eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 24 ATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSI-----GGLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~-----~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
-++.+++.+|..+ ++|. +.+..=..++++.+.. ..++.+.-.+..+.+.+.+++.+||+.-||-|
T Consensus 131 hTe~La~~~g~~~-~~Mm---------l~~~~LrV~lvT~HipL~~v~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV 200 (320)
T TIGR00557 131 HTEFLAELTGVKD-VVMM---------LAGPGLRVALATTHIPLKDVPAALTPELLVEKLRILHADLRRDFGIARPRIAV 200 (320)
T ss_pred hHHHHHHHhCCCC-eEEE---------EecCCeEEEEEeccccHHHHHHHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3677888887533 3332 2222223344444422 44789999999999999999999999888755
Q ss_pred E
Q 033640 99 K 99 (114)
Q Consensus 99 ~ 99 (114)
.
T Consensus 201 ~ 201 (320)
T TIGR00557 201 A 201 (320)
T ss_pred E
Confidence 4
No 94
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=60.13 E-value=9.7 Score=28.65 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=37.3
Q ss_pred CChHHhHH--HHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 69 LNPDVNKK--LSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 69 ~~~~~~~~--~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
.++..+.+ ++..|-++-.++||+|.++.|=+|.++......||.
T Consensus 44 ~~~~lr~rL~~~~~iR~FA~~~L~Lpdn~sY~~YadL~Rp~vvWnV 89 (337)
T PF10023_consen 44 TPPALRARLRLAQQIRRFASEELGLPDNGSYRSYADLDRPYVVWNV 89 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhcCCCcEEEEE
Confidence 45555544 788999999999999999999999999998888874
No 95
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=59.80 E-value=45 Score=25.10 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHH-----HhCCCccEEEEEEeC-CceeeecCC-CCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcC
Q 033640 18 SSILSEATSTVAN-----IIGKPEAYVMIVLKG-SVPMSFGGT-EDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 18 ~~~~~~l~~~~a~-----~~~kp~~~i~v~~~~-~~~m~~gg~-~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
+.....+.+++.. .+...+.-+.+.+.. ++.+.|+|. ++|.-.-....+...=-++-..+.....+.+...|-
T Consensus 47 ~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr 126 (396)
T TIGR01547 47 DSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGKKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIPRLR 126 (396)
T ss_pred HHHHHHHHHHHHHcCChhheeecCCccEEEecCCCeEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHHHhh
Confidence 4444444444433 233333433445544 788899887 667544333332221122222222223333333343
Q ss_pred CCCC--cEEEEEEeCCCCCcc
Q 033640 91 VPKS--RFFIKFYDTKASHFN 109 (114)
Q Consensus 91 i~~~--ri~I~f~~~~~~~~g 109 (114)
-+.. ++++.+.+-.+.+|=
T Consensus 127 ~~~~~~~i~~t~NP~~~~~w~ 147 (396)
T TIGR01547 127 ETGGKKFIIFSSNPESPLHWV 147 (396)
T ss_pred ccCCccEEEEEcCcCCCccHH
Confidence 2333 488888887777773
No 96
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=59.73 E-value=9.4 Score=31.68 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+.+|+.||.|.+.|.|..-+....-+++.+-- --.....|.--....+++-+.+.+...+.|+++++.+
T Consensus 470 GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~g--Sr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~l~~~~~~l 547 (758)
T TIGR02965 470 GQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAA--SSGSDLNGMAAQDAARQIKERLVAFAAEKWQVPAEDV 547 (758)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 46778899999999999999999998765332222221100 0001111222234455555666666688889988776
Q ss_pred EEE
Q 033640 97 FIK 99 (114)
Q Consensus 97 ~I~ 99 (114)
.+.
T Consensus 548 ~~~ 550 (758)
T TIGR02965 548 RFA 550 (758)
T ss_pred EEE
Confidence 553
No 97
>PRK12800 fliF flagellar MS-ring protein; Reviewed
Probab=58.76 E-value=98 Score=25.14 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhhc-CCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKKL-SVPKS 94 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~L-gi~~~ 94 (114)
.++..+|.+.+..+-+....+|.+.+-...-+ ......|.|-|.|+..+| +++++- ++|..++...- |++++
T Consensus 143 rALEgELaRTI~~l~~V~~ArVhLalPe~s~F-~~~~~~~tASV~l~l~~g~~L~~~QV----~aI~~LVAsSVpgL~pe 217 (574)
T PRK12800 143 HALETELSRTIGTLRPVREARVHLAIPKPSAF-TRQRDVASASVVLELRGGQGLERNQV----DAIVNLVASSIPDMTPE 217 (574)
T ss_pred HHHHHHHHHHHHhcCCcceEEEEEECCCCCcc-ccCCCCCCEEEEEecCCCCCCCHHHH----HHHHHHHHhhcCCCCcc
Confidence 35556777777777777777777777654444 344567888888887655 555554 44555555544 89999
Q ss_pred cEEEE
Q 033640 95 RFFIK 99 (114)
Q Consensus 95 ri~I~ 99 (114)
+|.|.
T Consensus 218 nVtVv 222 (574)
T PRK12800 218 RVTVV 222 (574)
T ss_pred ceEEE
Confidence 99874
No 98
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=57.27 E-value=66 Score=22.74 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=42.1
Q ss_pred EEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCC-CeeEEEE
Q 033640 5 NISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED-PAAYGEL 63 (114)
Q Consensus 5 ~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~-p~~~v~l 63 (114)
+|+..+-...-.......++.+.++++++.|...|.|.-.....+-|-|..+ -+++..+
T Consensus 152 NvD~tII~q~PKi~p~~~~m~~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avv 211 (216)
T PLN02862 152 NLDATLILQRPKLSPHKEAIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVV 211 (216)
T ss_pred EEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCCCccCCcEEEEEEE
Confidence 4444433322224568889999999999999999999999888888877664 3444433
No 99
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.75 E-value=15 Score=31.11 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKAS 106 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~ 106 (114)
|++-.+--.+++.+.||+|++++|+++++-+.+
T Consensus 103 KeeAI~~AwEflT~~lgl~~ekL~vtvy~~Dde 135 (879)
T COG0013 103 KEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDE 135 (879)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHEEEEEecCchH
Confidence 444555556778899999999999998775533
No 100
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=56.39 E-value=74 Score=22.98 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc-CCCCCcEE
Q 033640 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRFF 97 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L-gi~~~ri~ 97 (114)
++..+|++.+..+-|.-..+|.+.+-.... .......|..---+....+ ....+....+|..++..-. |+++++|.
T Consensus 108 ALe~ELarTI~~IdgV~~ARVHl~lP~~s~-~~~~~~~~~~aSv~~~~~~--~~~~~~qv~~I~~LVA~SV~gL~~enVt 184 (252)
T PRK15324 108 AIEQRLEQSLQTMEGVLSARVHISYDIDAG-ENGRPPKPVHLSALAVYER--GSPLAHQISDIKRFLKNSFADVDYDNIS 184 (252)
T ss_pred HHHHHHHHHHHhcCCcceEEEEEECCCCcc-ccccccCCcceeEEEecCC--CCCCHHHHHHHHHHHHhcCCCCCcccEE
Confidence 344566666666667766677776643322 2222123321111111221 2233666778888888877 79999999
Q ss_pred EEEEeCCC
Q 033640 98 IKFYDTKA 105 (114)
Q Consensus 98 I~f~~~~~ 105 (114)
|.+.+.++
T Consensus 185 VV~~~~~~ 192 (252)
T PRK15324 185 VVLSERSD 192 (252)
T ss_pred EEEEEccc
Confidence 99998654
No 101
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=56.25 E-value=27 Score=29.98 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|...+-...-+++.+-- --.....|.--....+++-++|.+...+.|+++++++
T Consensus 687 GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~a--Sr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~ 764 (956)
T PRK09800 687 GTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYA--SSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADV 764 (956)
T ss_pred CccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 46788899999999999999999998765333333321100 0001112222345566666777777788889888754
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 765 ~~ 766 (956)
T PRK09800 765 QL 766 (956)
T ss_pred EE
Confidence 44
No 102
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=55.79 E-value=7.8 Score=30.68 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCC--------ChHHhHHHHHHHHHHHHhh
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGL--------NPDVNKKLSAAISAILEKK 88 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~--------~~~~~~~~~~~i~~~l~~~ 88 (114)
-......+.+.+|+.||.|.+.|.|...+....-+++. +.+++ -....+++-+.+.+.-.+.
T Consensus 342 GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~----------t~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~ 411 (547)
T PF02738_consen 342 GQGSRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGG----------TGGSRSTYMSGNAVRKAAEDLREKLLEIAAEI 411 (547)
T ss_dssp SSSHHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB------------S-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCC----------CccchhhHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999987655333333311 12222 2455566777777888889
Q ss_pred cCCCCCcEE
Q 033640 89 LSVPKSRFF 97 (114)
Q Consensus 89 Lgi~~~ri~ 97 (114)
|+++++++.
T Consensus 412 ~~~~~~~l~ 420 (547)
T PF02738_consen 412 LGVDPEDLE 420 (547)
T ss_dssp TTSSGGGEE
T ss_pred cccccchhh
Confidence 999988775
No 103
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=55.76 E-value=27 Score=24.63 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC-------------CCC--eeEEEEEeeeCCChHHhHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT-------------EDP--AAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~-------------~~p--~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
-|-++..+++++-...|.+.=- ..+-+...-+-|-+ ..- ..-++++.+.... . -..+..++
T Consensus 96 gDVllHAi~DALLGA~glGDIG--~~FPdtd~~~Kg~~S~~lL~~a~~ll~~~G~~I~NvD~tII~q~P-K-i~p~~~~m 171 (216)
T PLN02862 96 GDVLLHCVVDAILGALGLPDIG--QIFPDTDPKWKGADSSVFIKEAVRLMHEAGYEIGNLDATLILQRP-K-LSPHKEAI 171 (216)
T ss_pred HHHHHHHHHHHHHHHccCCccc--ccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCC-c-chHHHHHH
Confidence 4778888888888887765421 11211111111211 011 2334455555322 2 23466778
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
.+.+.+-|++++++|.|..+-. +..|+-|
T Consensus 172 ~~~La~lL~i~~~~VnIKAtT~--E~LG~~G 200 (216)
T PLN02862 172 RSNLSKLLGADPSVVNLKAKTH--EKVDSLG 200 (216)
T ss_pred HHHHHHHhCCCcceEEEEEecC--CCCCCCc
Confidence 8889999999999999999877 5566543
No 104
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=55.67 E-value=18 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
...+++|-+++.+++|++++++++.
T Consensus 89 ~~~~r~lR~~l~~~~g~~~~~~~~~ 113 (119)
T PF04954_consen 89 ASAVRALRRHLREERGLPRDRIYAS 113 (119)
T ss_dssp HHHHHHHHHHHHHH----GGGEEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHeEEE
Confidence 4567889999999999999999875
No 105
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=55.60 E-value=19 Score=31.71 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=32.3
Q ss_pred eeEEEEEe--eeC-CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 58 AAYGELVS--IGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 58 ~~~v~l~~--~~~-~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+++|-.+. -|. .+.+++-+.++.+.+.+.++.|++++||++
T Consensus 481 a~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~ 524 (1229)
T PRK09490 481 AAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIF 524 (1229)
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 34444443 332 579999999999999999889999999986
No 106
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=55.52 E-value=45 Score=25.05 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=34.4
Q ss_pred eeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 58 AAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 58 ~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
-+.+-|...|+.+.-+-.-+++.+.+.+++..||.+.|+|+=-
T Consensus 246 ~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~ 288 (325)
T PF02733_consen 246 EVALLVNNLGGTSQLELYIIAREVLEQLEEEKGIKVVRVYVGN 288 (325)
T ss_dssp EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHTTEEEEEEEEE-
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCceEEEeEEEc
Confidence 3567788899999988899999999999889999999999853
No 107
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=55.38 E-value=14 Score=30.72 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+....-+++.+ ++--.....|.--....+++-++|.+...+.|+++++++
T Consensus 467 GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt--~~Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 544 (746)
T TIGR03194 467 GQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGS--YSSRVTFMVGNAAIDAAEELKGVLVAAAAKKLDAREEDI 544 (746)
T ss_pred CCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCC--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 467888999999999999999999976543222222110 000000011222245566677777777788888887665
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 545 ~~ 546 (746)
T TIGR03194 545 EC 546 (746)
T ss_pred EE
Confidence 33
No 108
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=54.96 E-value=12 Score=30.38 Aligned_cols=29 Identities=14% Similarity=0.423 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhh--cCCCCCcEEEEEEe
Q 033640 74 NKKLSAAISAILEKK--LSVPKSRFFIKFYD 102 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~--Lgi~~~ri~I~f~~ 102 (114)
|++-..-.-++|.+. ||++++|+||++..
T Consensus 97 K~eai~~awe~lt~~~~l~l~~~rl~vTv~~ 127 (594)
T PRK01584 97 KEESIKYSFEFLTSPDYLNIPKDKLYVTVFE 127 (594)
T ss_pred HHHHHHHHHHHhccchhcCCCHHHeEEEEeC
Confidence 455666667888876 99999999999985
No 109
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=54.85 E-value=14 Score=30.74 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+.+|+.||.|.+.|.|..-+-...-+++.+ .+--.....|.--....+++-+++.+...+.|+++++++
T Consensus 498 GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt--~~Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 575 (770)
T TIGR02416 498 GQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGT--YGSRSTPVAGAATALAARKIKAKAQMIAAHMLEVHEGDL 575 (770)
T ss_pred CCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 456778999999999999999999987643222222111 000001112222345566666677777677888887765
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
-+
T Consensus 576 ~~ 577 (770)
T TIGR02416 576 EW 577 (770)
T ss_pred EE
Confidence 44
No 110
>TIGR02024 FtcD glutamate formiminotransferase. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.
Probab=54.51 E-value=25 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.2
Q ss_pred eeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 65 SIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
-+++.+.++..++++.+.+.+.++|+||
T Consensus 95 Pl~~~t~eec~~lA~~vg~~i~~~l~VP 122 (298)
T TIGR02024 95 PVRNVTMEECVELAKEFGKRLGEELGVP 122 (298)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhhCCC
Confidence 3467899999999999999999999997
No 111
>PHA00432 internal virion protein A
Probab=54.50 E-value=59 Score=21.31 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=42.0
Q ss_pred hCCCcc-EEEEEEeCCceeeecC-CCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC
Q 033640 32 IGKPEA-YVMIVLKGSVPMSFGG-TEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 32 ~~kp~~-~i~v~~~~~~~m~~gg-~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
++.|.+ .++.....+.....|| ..+|+=+|.-..+-..+...++++.+.+...+.+-|..
T Consensus 31 ~~~~~s~~~~~~~~~G~~~aI~Gn~G~~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~~ 92 (137)
T PHA00432 31 PSFPPDSECVTLSLDGFVLAIGGNQGDQVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLDQ 92 (137)
T ss_pred CCCCCCceEEEEecCCeEEEEecCCCCceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHHh
Confidence 555555 5555555666565555 44896677777777788899999999988888665543
No 112
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=54.34 E-value=5.6 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhcCCCCCcEE
Q 033640 78 SAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~ 97 (114)
+.++..+++++|+|+++.+-
T Consensus 2 ~~~l~~fL~~el~ls~~~i~ 21 (58)
T PF11165_consen 2 STQLIRFLQEELGLSEASIA 21 (58)
T ss_pred cHHHHHHHHHHcCCCHHHHH
Confidence 35689999999999987653
No 113
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=54.12 E-value=56 Score=22.98 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC--CCCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHhhcCCC
Q 033640 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT--EDPAAYGELVSIGG--LNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~--~~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
.+++.+-+.+.+.-.. . .-|+++- =.+|.+ ..|..|+||-|... .+++.-+.+++++.+.+....+..
T Consensus 57 ~~~~~~l~~l~~~~~e--~-y~v~~Ea---THHGPt~~~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~ 128 (213)
T PF04414_consen 57 RLMKALLRALKKHAPE--G-YEVSYEA---THHGPTDLSVPSVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAE 128 (213)
T ss_dssp HHHHHHHHHHHHHGGC--T--EEEE-----S-SS-----SBEEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCST
T ss_pred HHHHHHHHHHHHhccC--C-CEEEEEe---eccCCCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccccccc
Confidence 4666666666665553 2 4444442 124655 38999999987753 778888888888888887766543
No 114
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=53.96 E-value=6.4 Score=22.82 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=7.5
Q ss_pred HhhcCCCCCc
Q 033640 86 EKKLSVPKSR 95 (114)
Q Consensus 86 ~~~Lgi~~~r 95 (114)
-++||||+++
T Consensus 60 DeELGIppdd 69 (71)
T PF14813_consen 60 DEELGIPPDD 69 (71)
T ss_pred hhhcCCCCCC
Confidence 4788888875
No 115
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=53.26 E-value=4.4 Score=30.74 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred HhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCC---hHHhHHHHHHHHHHHHhhcC--CCCCcEEEEEEeCCC
Q 033640 31 IIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLN---PDVNKKLSAAISAILEKKLS--VPKSRFFIKFYDTKA 105 (114)
Q Consensus 31 ~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~---~~~~~~~~~~i~~~l~~~Lg--i~~~ri~I~f~~~~~ 105 (114)
.+....+.+.+....++.+.|-|-++| -.|+|+.+++ -|+-.+++..-.+.|...+- -+...++++|.+..+
T Consensus 64 ~f~~~~s~~~i~~~~Gs~i~F~Gld~~---~kiKS~~~~~~~w~EEa~e~~~~~~~~l~~tir~~~~~~~i~~s~NP~~~ 140 (387)
T PF04466_consen 64 YFKINKSPIEIYKPNGSKIIFRGLDDP---EKIKSIKGIDIIWVEEAEEFSEEDFDQLIPTIRPKGPGSQIWLSFNPKSE 140 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcCCCceEEccCCCEEEEeCCCCh---hhcCCcccccEEEEechhhccHHHHHHHHHHhccCCCcEEEEEEECcCCC
Confidence 344444455555566788999888888 4788876655 45555566655666666665 667889999998887
Q ss_pred CCccc
Q 033640 106 SHFNF 110 (114)
Q Consensus 106 ~~~g~ 110 (114)
.+|=+
T Consensus 141 ~~wv~ 145 (387)
T PF04466_consen 141 SHWVY 145 (387)
T ss_dssp -----
T ss_pred CcchH
Confidence 78743
No 116
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=53.24 E-value=27 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=22.1
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
++.+++..+...|.+++.++++.+-
T Consensus 3 l~ke~k~~li~~iq~yf~~E~d~ei 27 (76)
T PF09932_consen 3 LSKEEKAELIDKIQRYFAEELDEEI 27 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcH
Confidence 6889999999999999999988653
No 117
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=53.22 E-value=47 Score=20.19 Aligned_cols=35 Identities=6% Similarity=0.227 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccc
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~ 111 (114)
....-++|-++.+.=++.|++|-|.+.-= ++.||.
T Consensus 8 qeIiNAvCl~~A~~~~i~P~dVeVeL~yD--dd~GFs 42 (91)
T PF10850_consen 8 QEIINAVCLHIAERKGIQPEDVEVELMYD--DDYGFS 42 (91)
T ss_pred HHHHHHHHHHHHHhcCCCcccEEEEEEEe--cCCCee
Confidence 34678999999999999999999987655 456654
No 118
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=52.85 E-value=29 Score=22.96 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
...+.+-++++++|+++++||+=+...
T Consensus 81 ~~~fi~~vA~~~~V~~~~v~VNst~l~ 107 (149)
T PF11694_consen 81 MVHFIESVAKDLGVSKEEVYVNSTALT 107 (149)
T ss_pred HHHHHHHHHHHhCCChheEEEeccccc
Confidence 334667889999999999999876653
No 119
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=52.37 E-value=46 Score=19.40 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=20.5
Q ss_pred ChHHhHHH----HHHHHHHHHhhcCCCCCcEEEE
Q 033640 70 NPDVNKKL----SAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 70 ~~~~~~~~----~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
+.+.|.++ +.++.++|.+ .||+++|+.+.
T Consensus 44 ~~~~n~~LS~~RA~~V~~~L~~-~gi~~~ri~~~ 76 (97)
T PF00691_consen 44 SAEYNQELSQRRAEAVKQYLVE-NGIPPERISVV 76 (97)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-TTSSGGGEEEE
T ss_pred hhhHHhHHHHHHHHHHHHHHHH-cCCChHhEEEE
Confidence 34445555 4577788877 79999999774
No 120
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=52.03 E-value=29 Score=28.90 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceee-ec-CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMS-FG-GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~-~g-g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
-......+.+.+|+.||.|.+.|.|....+.... ++ |+. +--.....|.--....+++-+++.+...+.|+++++
T Consensus 483 GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~---aSr~t~~~g~Av~~Aa~~lr~~l~~~aa~~l~~~~~ 559 (759)
T PRK09970 483 GQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAY---ASRQSYVAGPAIRKAALELKEKILAHAAVMLHQSAM 559 (759)
T ss_pred CCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 4668889999999999999999999765222211 11 100 000000111111333455666666777788888887
Q ss_pred cEEE
Q 033640 95 RFFI 98 (114)
Q Consensus 95 ri~I 98 (114)
.+-+
T Consensus 560 ~l~~ 563 (759)
T PRK09970 560 NLDI 563 (759)
T ss_pred HEEE
Confidence 5543
No 121
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=51.77 E-value=49 Score=19.53 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=31.3
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
.+++.-+++-+.|.+.+++...|+++.+-|.+..-
T Consensus 33 ~~p~~l~~mk~dil~VIskY~~id~~~v~v~l~~~ 67 (81)
T TIGR01215 33 LAPEYLEELRKEILEVISKYVEIDPEMVEVSLESQ 67 (81)
T ss_pred CCHHHHHHHHHHHHHHHHHheecchHhEEEEEEeC
Confidence 66778888999999999999999999999999865
No 122
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=51.57 E-value=19 Score=28.48 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
...+...+.++|||++++|.|..-|
T Consensus 346 ~T~~~qiaAe~Lgi~~~~V~v~~~d 370 (547)
T PF02738_consen 346 RTALAQIAAEELGIPPEDVRVVSGD 370 (547)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEEECB
T ss_pred hhhHHHHHHHHhCCChhhEEEEeCC
Confidence 4457888889999999999999887
No 123
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=51.55 E-value=16 Score=25.24 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=28.8
Q ss_pred eeEEEEEeee---C--CChHHhHHHHHHHHHHHHhh------cCCCCCcEEE
Q 033640 58 AAYGELVSIG---G--LNPDVNKKLSAAISAILEKK------LSVPKSRFFI 98 (114)
Q Consensus 58 ~~~v~l~~~~---~--~~~~~~~~~~~~i~~~l~~~------Lgi~~~ri~I 98 (114)
+.+|-+++-+ + .+++.+......+.+++.++ .||+++||++
T Consensus 117 ~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~ 168 (210)
T PF00809_consen 117 APVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIIL 168 (210)
T ss_dssp SEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEE
T ss_pred CEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEee
Confidence 4566666652 2 34666668889999999887 8999999987
No 124
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=51.07 E-value=34 Score=22.10 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=18.2
Q ss_pred CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc
Q 033640 53 GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 53 g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L 89 (114)
|+...-.||+|....+-+...|.+ +-++|++|.+.|
T Consensus 78 g~e~e~~~IQv~LP~~AThGDK~K-ANEfckfLAk~l 113 (130)
T PF08968_consen 78 GTENEQSYIQVVLPDGATHGDKGK-ANEFCKFLAKKL 113 (130)
T ss_dssp EEETTEEEEEEE--TT--HHHHHH-HHHHHHHHHHHH
T ss_pred ccCCcceEEEEECCCCCccCcchh-HHHHHHHHHHHh
Confidence 445556789998887766544332 223555555544
No 125
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=51.06 E-value=36 Score=27.90 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=41.8
Q ss_pred cCCCCCeeEEEEEeeeCCCh---HHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 52 GGTEDPAAYGELVSIGGLNP---DVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 52 gg~~~p~~~v~l~~~~~~~~---~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+...+|+++-||+ +|..++ +-..+++.++..++ ++||+..=-+.=.-+-.-..+|||.|.
T Consensus 139 ~~~~e~~vIYElH-vGs~~~~~~~~~~e~a~~llpYl-~elG~T~IELMPv~e~p~~~sWGYq~~ 201 (628)
T COG0296 139 GRFWEPIVIYELH-VGSFTPDRFLGYFELAIELLPYL-KELGITHIELMPVAEHPGDRSWGYQGT 201 (628)
T ss_pred CCCCCCceEEEEE-eeeccCCCCcCHHHHHHHHhHHH-HHhCCCEEEEcccccCCCCCCCCCCcc
Confidence 3445899999999 677777 78899999999999 788987522222222222357888874
No 126
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=50.67 E-value=25 Score=21.84 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=24.1
Q ss_pred EEEEEeeeC-CChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 60 YGELVSIGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 60 ~v~l~~~~~-~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++.+..... ..-.. .+++..+|.+.|++|..+|.|.
T Consensus 37 ~Lkv~i~apP~~GKA----N~~li~~Lak~~~v~kS~V~iv 73 (102)
T COG1872 37 RLKVRITAPPVDGKA----NEELIKFLAKTFGVPKSSVEIV 73 (102)
T ss_pred eEEEEEecCCCCcch----hHHHHHHHHHHhCCCcccEEEE
Confidence 566654332 33333 4557778889999999998875
No 127
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=50.42 E-value=29 Score=18.71 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=15.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEeC-CCCCcccc
Q 033640 80 AISAILEKKLSVPKSRFFIKFYDT-KASHFNFL 111 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~~-~~~~~g~~ 111 (114)
+|...+ ++||++.+++-+..-+- +..-||++
T Consensus 10 Ai~~A~-~~l~~~~~~~~~eVi~~g~kGf~G~g 41 (52)
T PF14804_consen 10 AIEKAL-KELGVPREELEYEVIEEGKKGFFGFG 41 (52)
T ss_dssp HHHHHH-HHTT--GGGEEEEEEE--B-------
T ss_pred HHHHHH-HHhCCChHHEEEEEEEcCCCcEEeec
Confidence 344444 78999999999988877 33345543
No 128
>PF10015 DUF2258: Uncharacterized protein conserved in archaea (DUF2258); InterPro: IPR017140 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.37 E-value=29 Score=20.35 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
.++.+.|.+.+.+++||++.++
T Consensus 38 aeLNk~ly~~lv~~~~i~K~DV 59 (75)
T PF10015_consen 38 AELNKKLYEKLVNKMKIDKLDV 59 (75)
T ss_pred HHHHHHHHHHHHHHhCCCcccE
Confidence 4566778888999999998654
No 129
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=49.95 E-value=23 Score=18.74 Aligned_cols=24 Identities=4% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+-+.+++.+|+++++..+.|.
T Consensus 22 v~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 22 VSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred HHHHHHHHHHHHCCCHHHEEEEEC
Confidence 344667777888999999888775
No 130
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=49.94 E-value=25 Score=30.16 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+.+|+.||.|.+.|.|...+-...-+++.+--. -.....|.--....+++-++|.+...+.|+++++++
T Consensus 683 GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aS--r~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~ 760 (951)
T TIGR03313 683 GTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYAS--SGTCFSGNAAKRAAENLREKILFHGAEMLGEPVADV 760 (951)
T ss_pred CccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 467888999999999999999999987653333333111000 000011222244456666667666678889888765
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
-+
T Consensus 761 ~~ 762 (951)
T TIGR03313 761 DL 762 (951)
T ss_pred EE
Confidence 44
No 131
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=49.27 E-value=34 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.9
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCC
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAS 106 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~ 106 (114)
.+.++++-..|..++.-.||+||+..-..|.+-+.+
T Consensus 200 ~~~kEe~l~eif~~l~~~lg~PP~~Fdf~YrdKd~~ 235 (444)
T COG3579 200 EALKEELLQEIFNFLAMTLGLPPEKFDFAYRDKDNK 235 (444)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchhcceEEeccccc
Confidence 567888899999999999999999998888876543
No 132
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=48.71 E-value=49 Score=22.05 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeec
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFG 52 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g 52 (114)
.+++.+++|..++- .+|++-+.+.++.+..|.+|
T Consensus 114 v~~LReeisail~~--a~~~DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 114 VESLREEISAILSV--ATPEDEVLVRLESPGGMVHG 147 (155)
T ss_pred HHHHHHHHHHHHHh--CCCCCeEEEEEecCCceeec
Confidence 47788888877764 46789999999988888887
No 133
>PF07837 FTCD_N: Formiminotransferase domain, N-terminal subdomain; InterPro: IPR012886 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. This entry represents the N-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 2PFD_C 1QD1_B.
Probab=46.95 E-value=58 Score=22.32 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=21.6
Q ss_pred eeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 65 SIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
-+++.+.++..++++.+.+.+.++|+||
T Consensus 93 Pl~~~t~eec~~~A~~~g~~i~~~l~vP 120 (178)
T PF07837_consen 93 PLSGVTMEECAELARELGERIGEELGVP 120 (178)
T ss_dssp EEES--HHHHHHHHHHHHHHHHHHHT--
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhhCCC
Confidence 3457899999999999999999999987
No 134
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=46.62 E-value=40 Score=25.69 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC---------------CCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT---------------EDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~---------------~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
-+-++..+++++-...|.+.= =..+-+...-+-|-+ .=-..-+.++.+.... +-..+..++
T Consensus 254 ~dv~~ha~~da~lga~~~gdi--g~~fp~~d~~~k~~~s~~~l~~~~~~~~~~~~~~~n~d~~i~~~~p--k~~~~~~~~ 329 (378)
T PRK09382 254 ADVALHALTDALLGAIGAGDI--GEHFPDSDPQWKGAASKILLEHAADFVREAGGEIINADVTIIAEAP--KIGPHKQAM 329 (378)
T ss_pred HHHHHHHHHHHHHHHccCCcC--cccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEecCC--cchHHHHHH
Confidence 467777888877777765432 112222211222211 0012344555555322 123366778
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
.+.+++.|+++.++|.|..+-. +..||-|
T Consensus 330 ~~~~~~~l~~~~~~v~~ka~t~--e~lg~~g 358 (378)
T PRK09382 330 RENLAEILGIPKDRVSVKATTT--EKLGFVG 358 (378)
T ss_pred HHHHHHHhCCCcceEEEEEecC--CCCcCCc
Confidence 8889999999999999998876 6777755
No 135
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=46.61 E-value=74 Score=20.15 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCccEEEEEEe-CC--ceeeecCC-CCC-------eeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc---
Q 033640 24 ATSTVANIIGKPEAYVMIVLK-GS--VPMSFGGT-EDP-------AAYGELVSIGGLNPDVNKKLSAAISAILEKKL--- 89 (114)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~-~~--~~m~~gg~-~~p-------~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L--- 89 (114)
+.+.++.++|+....-++.++ .. ..+.+.|- +.| .--.+...++++.-+..+.+.++|.+....-+
T Consensus 2 l~~~i~~v~G~~~~~~li~i~~~~~~~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~ 81 (132)
T cd03485 2 HKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKS 81 (132)
T ss_pred HHHHHHHHhCHHHHhccEEEeccCCCCcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccc
Confidence 356777778765543344443 11 22333221 111 11122334566655544788888888888777
Q ss_pred CCCCCcEEEEEEeCCCCCcccc
Q 033640 90 SVPKSRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 90 gi~~~ri~I~f~~~~~~~~g~~ 111 (114)
.....=+++.+-+++++.+=+|
T Consensus 82 ~~~~~P~~~L~i~~~~~~vDVN 103 (132)
T cd03485 82 SLRRYPVFFLNILCPPGLVDVN 103 (132)
T ss_pred cccCCCEEEEEEEcCCCceeec
Confidence 6666668888888888776554
No 136
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=46.44 E-value=1.5e+02 Score=23.78 Aligned_cols=69 Identities=9% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 23 ~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
-+++.+..+++-.++.-.|-++++. -+.+-+...|+.+.-+---.+....+.|++++||.+.|+|.=+.
T Consensus 238 lVs~mL~~ll~~~~drs~V~~~~~d----------~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~f 306 (582)
T KOG2426|consen 238 LVSQMLPQLLDPTKDRSYVKFEEGD----------EVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTF 306 (582)
T ss_pred HHHHHHHHhcCCccccccccccCCC----------eEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeee
Confidence 4455555666654444444444332 24566778888887777788889999999999999999986443
No 137
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=45.88 E-value=35 Score=18.62 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
..+-+.+++..|+|+++..+.|..
T Consensus 19 ~~lK~~i~~~~~~~~~~~~L~~~G 42 (69)
T PF00240_consen 19 ADLKQKIAEETGIPPEQQRLIYNG 42 (69)
T ss_dssp HHHHHHHHHHHTSTGGGEEEEETT
T ss_pred HHhhhhcccccccccccceeeeee
Confidence 346677888899999999998753
No 138
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=45.80 E-value=1.9e+02 Score=24.70 Aligned_cols=87 Identities=8% Similarity=0.067 Sum_probs=58.7
Q ss_pred EEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHH
Q 033640 5 NISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAI 84 (114)
Q Consensus 5 ~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~ 84 (114)
.+............++.+....++--++|+.-+.+.|--..+.--+|||.+.+. ..+|.-+-+..+.++.+.
T Consensus 292 TLSiGig~g~~~~~e~~~~A~~aldlAlgRGGDQvvvk~~~~~~~fyGGks~~~--------eKrtrVraRvia~~L~el 363 (838)
T PRK14538 292 TLSMGIACWNLSYDKLATYSQNAIELAQKRGGDQAVVNIENEKIKYFGAKIASL--------SKQSKVNARVNAQNLVDI 363 (838)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCEEEEEcCCCCceEeCCCCCcc--------cchhhHHHHHHHHHHHHH
Confidence 333344444455678888888899999999988887655435667889988873 346666666667777777
Q ss_pred HHhhcCCCCCcEEEEEEeCC
Q 033640 85 LEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 85 l~~~Lgi~~~ri~I~f~~~~ 104 (114)
+. ..++++|.=|..|
T Consensus 364 I~-----~~d~ViI~gH~nP 378 (838)
T PRK14538 364 LK-----KNPHCFIMGHNHT 378 (838)
T ss_pred Hh-----cCCeEEEEecCCC
Confidence 64 3467777665543
No 139
>KOG4493 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.58 E-value=1.1e+02 Score=21.63 Aligned_cols=63 Identities=19% Similarity=0.441 Sum_probs=46.8
Q ss_pred eeeec--C-CCCCeeEEEEEeeeCCChHHhHHHHHHHHHH---HHhhcCCCCCcEEEEEEeC-CCCCccc
Q 033640 48 PMSFG--G-TEDPAAYGELVSIGGLNPDVNKKLSAAISAI---LEKKLSVPKSRFFIKFYDT-KASHFNF 110 (114)
Q Consensus 48 ~m~~g--g-~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~---l~~~Lgi~~~ri~I~f~~~-~~~~~g~ 110 (114)
+..+| | .+-.|=+++++-..--+.|.++++.++|.+| ++++-|-...++-+.|.+. +..+|=+
T Consensus 44 ~~s~GtVg~kdvdce~iDiTYV~~~s~EL~~kl~~~i~qF~~~ir~~~~~g~gQi~L~FYekskK~~Wf~ 113 (219)
T KOG4493|consen 44 HRSFGTVGAKDVDCEFIDITYVRCVSAELNEKLDEKIAQFIDTIRNEAGAGVGQISLEFYEKSKKKRWFF 113 (219)
T ss_pred EEEeccccccccceeEEEEEEEEechHHHHHHHHHHHHHHHHHHHhCCCCCcceEeeeeeecccCCCCCc
Confidence 56666 3 3357889999988878888888888877776 4555555557899999999 6667755
No 140
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=45.45 E-value=51 Score=19.89 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~ 54 (114)
||-|.|....++..++..+-++.+.+.+++.++. --+|+. ..+.|-++
T Consensus 1 M~~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~-----e~~W~G-D~l~F~~~ 48 (91)
T TIGR02610 1 MSSISVERDHSLGPAAARAKAEDLARKLTDRYGL-----ASHWEG-DTLRIARS 48 (91)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHHHHHHHHhCC-----EeEEeC-CEEEEEEe
Confidence 8889999988888776677777788888888874 455554 46777644
No 141
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=44.67 E-value=69 Score=19.22 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=34.5
Q ss_pred eEEEEEe--eeCCC-hHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 59 AYGELVS--IGGLN-PDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 59 ~~v~l~~--~~~~~-~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..++++. .-|.+ ++.-+++-+.+.+.+++.+|+...++.|.+.++
T Consensus 60 i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~~v 107 (108)
T PF03780_consen 60 ITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVEDV 107 (108)
T ss_pred eEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEEec
Confidence 3444443 23344 777888888999999999999999999999876
No 142
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=44.65 E-value=79 Score=23.38 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=40.1
Q ss_pred CCeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCccEE---EEEEeCCceeeecCCCCCeeEEEEEeeeCCCh
Q 033640 1 MPCLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYV---MIVLKGSVPMSFGGTEDPAAYGELVSIGGLNP 71 (114)
Q Consensus 1 MP~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i---~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~ 71 (114)
+|+++|-|-....+ ++..+|+++|.+.+- .+|.....+ .+..+-+..+.--|+......++|+.++++..
T Consensus 147 ~PLiEIVTePd~~s~~EA~~~~~~L~~il~-~lgvs~~~me~GslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~ 220 (289)
T PF02934_consen 147 VPLIEIVTEPDIRSPEEAAAFLKKLRRILR-YLGVSDGNMEEGSLRCDVNVSVRPKGEEKFGTRVEIKNLNSFRF 220 (289)
T ss_dssp -EEEEEEE-TTB-SHHHHHHHHHHHHHHHH-HHTSB--SGGGTSEEEEEEEEECETTSSSTS-EEEEEEE-SHHH
T ss_pred ccceEEeeCCCCCCHHHHHHHHHHHHHHHH-hcCcccCccccCcEEeeceeeecCCCCCCCcceEEEecccCHHH
Confidence 69999999877544 446788888877664 444433322 22222223333346666778999999998653
No 143
>PRK05883 acyl carrier protein; Validated
Probab=43.48 E-value=25 Score=21.07 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=21.4
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCcEE
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
+..+.+....+.+.+.+.|+++++++-
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~~~I~ 35 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDLTRVT 35 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCChhhCC
Confidence 344566888899999999999988754
No 144
>PRK13987 cell division topological specificity factor MinE; Provisional
Probab=43.24 E-value=75 Score=19.26 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
+.+|+.-.++-+.|.+.+++...|.++++-|.+..-.
T Consensus 31 ~~sp~~l~~lk~eIl~VI~kYv~Id~~~v~i~l~~~~ 67 (91)
T PRK13987 31 DISPDVLEMIKEDILKVISKYVEIDNEDVDIKMTKSE 67 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHheeeCccceEEEEEeCC
Confidence 4678888899999999999999999999999998754
No 145
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=43.18 E-value=60 Score=20.58 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
.+.+.+.| +++||+|+|+.+.....
T Consensus 79 v~~~k~~L-~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 79 VERLKKLL-EELGIEPERVRLYWISA 103 (124)
T ss_pred HHHHHHHH-HHcCCChhHeEEEEeCc
Confidence 33344444 78899999998876654
No 146
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=42.81 E-value=22 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCC
Q 033640 72 DVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 72 ~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
..+++++-.....+.+++|||++
T Consensus 94 ~~rraLTle~ikkL~q~~gIpa~ 116 (120)
T COG5499 94 SGRRALTLEHIKKLHQRFGIPAD 116 (120)
T ss_pred hhhhHhhHHHHHHHHHHhCcCHH
Confidence 45788899999999999999976
No 147
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=42.45 E-value=41 Score=29.64 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=31.6
Q ss_pred eeEEEEEe--ee-CCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 58 AAYGELVS--IG-GLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 58 ~~~v~l~~--~~-~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+.+|-.+. -| ..+.+.+-++++++.+.+.++.||+++||++
T Consensus 465 a~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~ 508 (1178)
T TIGR02082 465 AAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFPPEDIIF 508 (1178)
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 34444443 33 2578889999999999998879999999986
No 148
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.36 E-value=80 Score=19.33 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=29.5
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
..+++...+..|-.+|+.+.+.+..-+++.+.|.-
T Consensus 6 ~~~~l~~~~v~sLKeKRavlr~iv~rLk~KFnvSv 40 (95)
T COG1550 6 LECELRLYDVRSLKEKRAVLRPIVTRLKNKFNVSV 40 (95)
T ss_pred EEEEEEecccccHHHHHHHHHHHHHHHHHhcceee
Confidence 45667777778999999999999999999988764
No 149
>PRK05350 acyl carrier protein; Provisional
Probab=41.98 E-value=23 Score=20.53 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEE
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
+++..+.+.+.+.+.++++++++-
T Consensus 4 ~~~i~~~v~~ii~~~~~~~~~~i~ 27 (82)
T PRK05350 4 REEILERLRAILVELFEIDPEDIT 27 (82)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCC
Confidence 456677888899999999887653
No 150
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=41.63 E-value=30 Score=19.21 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=22.9
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC--CCCCccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT--KASHFNF 110 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~--~~~~~g~ 110 (114)
+.+++ +.|+++++.+-|.+..- ++++|..
T Consensus 18 l~~ll-~~l~~~~~~vav~~N~~iv~r~~~~~ 48 (65)
T PRK05863 18 VAALL-DSLGFPEKGIAVAVDWSVLPRSDWAT 48 (65)
T ss_pred HHHHH-HHcCCCCCcEEEEECCcCcChhHhhh
Confidence 66666 55899999999998877 7788763
No 151
>COG3252 Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]
Probab=41.58 E-value=31 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+++.++.|+.++++|+...+-
T Consensus 148 vae~vA~ecgV~~EnVyllvapT 170 (314)
T COG3252 148 VAEYVAKECGVEPENVYLLVAPT 170 (314)
T ss_pred HHHHHHHHcCCChhheEEEeccc
Confidence 78899999999999999987654
No 152
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=41.46 E-value=1.6e+02 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=27.5
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..++.+.-.+..+.+.+.+++.+||..-||-|.
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~ 211 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIA 211 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 447888888888999999999999987787654
No 153
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=41.34 E-value=1.5e+02 Score=22.34 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHHHHhCC----CccEEEEEEeCCceeeecCCCCCeeEEEEEe-----eeCCChHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 24 ATSTVANIIGK----PEAYVMIVLKGSVPMSFGGTEDPAAYGELVS-----IGGLNPDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 24 l~~~~a~~~~k----p~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~-----~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
=++.+++.+|. |++++|....+ .=..++++.+. ...++.+.-.+..+.+.+.+.+.+||..-
T Consensus 138 hTe~La~~~g~~~~~~~~~~Mml~~~---------~LrV~lvT~HipL~~V~~~it~e~i~~~i~l~~~~l~~~~gi~~P 208 (336)
T PRK05312 138 HTEFLAELAGVATGKPVQPVMMLAGP---------QLRVVPVTIHIPLRDVPAALTPELIVATARITAADLRRRFGIASP 208 (336)
T ss_pred hHHHHHHHhCCCccCCCceEEEEecC---------CcEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35777777764 33444443322 22333444442 24578999999999999999999999888
Q ss_pred cEEEE
Q 033640 95 RFFIK 99 (114)
Q Consensus 95 ri~I~ 99 (114)
||-|.
T Consensus 209 rIaV~ 213 (336)
T PRK05312 209 RLAVA 213 (336)
T ss_pred CEEEE
Confidence 87664
No 154
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=41.30 E-value=77 Score=18.85 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=31.2
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
.+|+.-.++-+.|.+.+++...|+++.+-|.+..-
T Consensus 35 ~~p~~l~~lk~dil~VIsKYv~Id~~~v~i~l~~~ 69 (84)
T PRK13989 35 QPPDYLPALQKELVAVISKYVKISPDDIRVSLERQ 69 (84)
T ss_pred CCHHHHHHHHHHHHHHHHHheeeCccceEEEEEeC
Confidence 57888888999999999999999999999999765
No 155
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=41.30 E-value=1.5e+02 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=28.3
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..++.+.-.+..+.+.+.+.+.+||..-||-|.
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~ 204 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVT 204 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 347899999999999999999999988887665
No 156
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=41.18 E-value=1.4e+02 Score=22.69 Aligned_cols=44 Identities=7% Similarity=0.200 Sum_probs=30.3
Q ss_pred ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccccC
Q 033640 70 NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL 114 (114)
Q Consensus 70 ~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~~ 114 (114)
+++.-.+|++.+..+- +++.=.-.=|+=.|.+-|+..+||+|++
T Consensus 65 D~~AAleYA~RL~~l~-e~~~d~L~iVMRvYfeKPRTtVGWKGLI 108 (351)
T COG0722 65 DPEAALEYARRLKALR-EELKDRLEIVMRVYFEKPRTTVGWKGLI 108 (351)
T ss_pred CHHHHHHHHHHHHHHH-HHhhCceEEEEEEeecCCcccccccccc
Confidence 5677778888776654 4443333334446789999999999985
No 157
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=40.85 E-value=75 Score=18.60 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
.+.|.+.|++.++++..++-|.+.+++
T Consensus 52 i~~L~~~L~k~~~~~~~~i~v~~~~v~ 78 (81)
T cd02413 52 IRELTSLVQKRFNFPEGSVELYAEKVA 78 (81)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEcc
Confidence 366777888888999999999888875
No 158
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=40.70 E-value=1.6e+02 Score=22.18 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEE
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
..|.+.+.+.+.+.+.+.. .++..+.|.-..-|.-+++- | +-..+-+++-++.+.+.||.+.++..
T Consensus 163 p~yI~a~a~~I~~~~~~~~-------~~~~~llfSaHglP~~~~~~---G----DpY~~q~~~t~~li~e~lg~~~~~~~ 228 (320)
T COG0276 163 PLYIEALADSIREKLAKHP-------RDDDVLLFSAHGLPKRYIDE---G----DPYPQQCQETTRLIAEALGLPEEEYD 228 (320)
T ss_pred hHHHHHHHHHHHHHHHhcC-------CCCeEEEEecCCCchhhhhc---C----CchHHHHHHHHHHHHHHcCCCchhee
Confidence 5577777777777777643 12233333322223222221 1 11455566677788889999999999
Q ss_pred EEEEe
Q 033640 98 IKFYD 102 (114)
Q Consensus 98 I~f~~ 102 (114)
+.|+.
T Consensus 229 ~~~QS 233 (320)
T COG0276 229 LTFQS 233 (320)
T ss_pred EEeec
Confidence 99998
No 159
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=40.69 E-value=54 Score=18.06 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=17.9
Q ss_pred HHHHHHhhcCCCC-CcEEEEEEe
Q 033640 81 ISAILEKKLSVPK-SRFFIKFYD 102 (114)
Q Consensus 81 i~~~l~~~Lgi~~-~ri~I~f~~ 102 (114)
+.+.+.+..|+++ +++.+.|..
T Consensus 26 l~~~~~~~~~i~~~~~~~l~fdG 48 (72)
T PF11976_consen 26 LIEKYCEKKGIPPEESIRLIFDG 48 (72)
T ss_dssp HHHHHHHHHTTTT-TTEEEEETT
T ss_pred HHHHHHHhhCCCccceEEEEECC
Confidence 5567778899999 999998864
No 160
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=40.69 E-value=44 Score=21.57 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=30.2
Q ss_pred CcChHHHHHHHHHHHHHHhCCCccEEEEEEe------CCceeeecCCCCCeeEEEEE-eeeCCChHHhHH
Q 033640 14 GVDTSSILSEATSTVANIIGKPEAYVMIVLK------GSVPMSFGGTEDPAAYGELV-SIGGLNPDVNKK 76 (114)
Q Consensus 14 ~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~------~~~~m~~gg~~~p~~~v~l~-~~~~~~~~~~~~ 76 (114)
+.+++++...+.+.+.+.+|.+..-+..+.. .+.++..+...+|. ++.+. ..+..+++...+
T Consensus 50 ~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~~nPf~~~~~~~~~-~~~v~fl~~~~~~~~~~~ 118 (137)
T PF08002_consen 50 DRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIAANPFPWEAEADPK-RLYVTFLSGPPDAEALEE 118 (137)
T ss_dssp SS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHTT--GGGGS----S-EEEEEEE-TT--HHHHHH
T ss_pred CCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHHHCCCcccccCCcc-eEEEEEeCCCCCHHHHHH
Confidence 3457899999999999999998666655443 23344444434564 44444 344455554333
No 161
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=40.46 E-value=82 Score=18.89 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.1
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
..+++...+..|-..|++..+.+.+-+.+.+++.
T Consensus 5 l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvS 38 (90)
T PF04456_consen 5 LRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVS 38 (90)
T ss_dssp EEEEEE----SSHHHHHHHHHHHHHHHHHHSS-E
T ss_pred EEEEEEeccccchhHhHHHHHHHHHHHHhhCCeE
Confidence 3466677788999999999999999999988764
No 162
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=40.22 E-value=72 Score=18.15 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=27.3
Q ss_pred eCCCh--HHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 67 GGLNP--DVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 67 ~~~~~--~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
++.++ +.-.++-+.|.+.+++...|.++++-|.+..
T Consensus 18 ~~~~~~~~~l~~lk~eil~viskYv~i~~~~v~v~l~~ 55 (70)
T PF03776_consen 18 GGLSPQPDYLEQLKKEILEVISKYVEIDEEDVEVQLER 55 (70)
T ss_dssp CSC-CTTSSHHHHHHHHHHHHHHHS---CCCEEEEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhheecCcccEEEEEEE
Confidence 34555 7788899999999999999999999999984
No 163
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=40.09 E-value=89 Score=19.19 Aligned_cols=36 Identities=8% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+.+|+.-.++-+.|.+.+++...|+++++-|.+..-
T Consensus 35 ~~sp~~l~~mk~dIl~VIskYv~Id~~~v~V~l~~~ 70 (97)
T PRK13988 35 DLSPELLEQMRKEILEVVARYVEIDPEEGEVSLETE 70 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHHHeeeCccceEEEEEeC
Confidence 467888889999999999999999999999999764
No 164
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=40.07 E-value=33 Score=18.93 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
.-+.|.+.+|++..++-|.|++..
T Consensus 34 ~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 34 EVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred HHHHHHHHhCCCHHHeeeecccCC
Confidence 344566788999999999998763
No 165
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=39.93 E-value=72 Score=20.61 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=21.2
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|......+-++.+ +++ ++|||.++|+.......
T Consensus 72 GN~ka~rR~~~lk---e~l-~elgie~eRv~~~wiSa 104 (132)
T COG1908 72 GNYKAKRRMELLK---ELL-KELGIEPERVRVLWISA 104 (132)
T ss_pred cchHHHHHHHHHH---HHH-HHhCCCcceEEEEEEeh
Confidence 4455555444433 333 78899999998776654
No 166
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=39.79 E-value=38 Score=19.22 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=13.8
Q ss_pred HHHHHHHHhhcCCCCCcEEE
Q 033640 79 AAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I 98 (114)
+++.+++.++|++.|..+-+
T Consensus 2 ~eFa~~~~r~l~l~p~~VK~ 21 (64)
T PF14894_consen 2 REFAEYLERELNLFPGMVKV 21 (64)
T ss_dssp HHHHHHHHH---HSTTTEEE
T ss_pred hHHHHHHHHhcccCccceEE
Confidence 56889999999999987754
No 167
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=39.39 E-value=43 Score=23.80 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcc
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFN 109 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g 109 (114)
..+.+++.+.+.+ +|++++||++.+.+.=..-+|
T Consensus 199 ~~mv~~~~~~L~~-~Gv~~~~i~~~~~~~m~cg~g 232 (261)
T TIGR02911 199 PIMMKFTVQELLK-KGIKEENIWVSYERKMCCGVG 232 (261)
T ss_pred HHHHHHHHHHHHH-cCCCHHHEEEEeccceeccCc
Confidence 5577777788744 699999999999988543333
No 168
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=38.83 E-value=1.8e+02 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC-eeEEEE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP-AAYGEL 63 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p-~~~v~l 63 (114)
......++.+.++++++.|...|.|.-.....+-|-|..+- +|+..+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~v~~ka~t~e~lg~~g~~~gi~~~a~~ 369 (378)
T PRK09382 322 IGPHKQAMRENLAEILGIPKDRVSVKATTTEKLGFVGRGEGIAAIATA 369 (378)
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCcCCcCCCceEEEEEE
Confidence 35678899999999999999999999999999998887654 444433
No 169
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=38.83 E-value=37 Score=28.20 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEE--EeCCCCCcccccc
Q 033640 76 KLSAAISAILEKKLSVPKSRFFIKF--YDTKASHFNFLVC 113 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~~ri~I~f--~~~~~~~~g~~g~ 113 (114)
-....+.+...+.||||.++|.+.. ++..+..||..|.
T Consensus 468 G~~t~~~q~~ae~lgip~~~V~v~~gDt~~~~~~~~s~GS 507 (731)
T COG1529 468 GTDTVLAQIAAEELGIPPDDVEVVHGDTDVPVGGWGSVGS 507 (731)
T ss_pred cHHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcCc
Confidence 5556677888999999999999999 6666777777663
No 170
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=38.68 E-value=2.4e+02 Score=23.83 Aligned_cols=86 Identities=10% Similarity=0.132 Sum_probs=50.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeee---C-C-ChHHhHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIG---G-L-NPDVNKK 76 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~---~-~-~~~~~~~ 76 (114)
|...+..+-+..+...++.+.++...+++.||..+.-..+.++.| ++..-.+|-+..+. . + ++.....
T Consensus 67 ~vyH~ilSF~PgE~pt~e~~~~I~~~~~~~LG~~~hQ~Vva~H~D-------Tdh~HiHIviNrV~p~g~Ki~d~~~~yr 139 (746)
T PRK13878 67 KTYHLIVSFRAGEQPSADTLRAIEERICAGLGYGEHQRVSAVHHD-------TDNLHIHIAINKIHPTRHTIHEPYYAYR 139 (746)
T ss_pred eeEEEEECCCCCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEECC-------CCCceeEEEEeeecCCCCeecCchHHHH
Confidence 445555555555443477888998889999998777555556544 22222233332221 1 1 2222222
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 033640 77 LSAAISAILEKKLSVPKS 94 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ 94 (114)
-...+|+.|+.+.|+...
T Consensus 140 ~L~kicreLE~eyGLsv~ 157 (746)
T PRK13878 140 TLAELCTKLERDYGLERD 157 (746)
T ss_pred HHHHHHHHHHHHhCCEec
Confidence 336899999999998543
No 171
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=38.60 E-value=1.4e+02 Score=20.92 Aligned_cols=55 Identities=16% Similarity=0.385 Sum_probs=40.8
Q ss_pred HHhCCCccEEEEEEeCC---ceeeecC--CCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC
Q 033640 30 NIIGKPEAYVMIVLKGS---VPMSFGG--TEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 30 ~~~~kp~~~i~v~~~~~---~~m~~gg--~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
...+.|.+||++.++.. ..+.||- .+++|=+=+.+..||.+++. +.++++.-|+-
T Consensus 38 s~~~~~~QyiiLkL~~paiV~sItFGKy~K~HvCNlK~fkv~gG~~~~~-------m~ell~~gLkN 97 (199)
T PF06588_consen 38 SSSNSPPQYIILKLESPAIVKSITFGKYEKPHVCNLKKFKVYGGMDEEN-------MIELLHGGLKN 97 (199)
T ss_pred CCCCCCCcEEEEEcCCCeEEEEEeccccccCccccceeeEEeccCCHHH-------HHHHHhhhccC
Confidence 33488999999999744 4789994 45888888889999998765 55566555543
No 172
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=38.52 E-value=1.9e+02 Score=22.94 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCccEE---EEEEeCCceeeecCCCCCeeEEEEEeeeCCChHH
Q 033640 1 MPCLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYV---MIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDV 73 (114)
Q Consensus 1 MP~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i---~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~ 73 (114)
+|+++|-|-....+ ++..+|++.|.+.+ ..+|.....+ .+..+-+..+...|+..-..-++|+.++++..-.
T Consensus 148 iPLiEIVTePd~~s~~eA~~~~~~L~~il-r~~g~sd~~me~GslR~DvNVSir~~g~~~~G~RvEIKNlnS~~~i~ 223 (474)
T PRK05477 148 VPLIEIVSEPDMRSPEEARAYLKKLRSIL-RYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTRVEIKNLNSFRFVE 223 (474)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHHH-HHhCCCcCccccCceEEeeeEEeccCCcccCCceeEEeccccHHHHH
Confidence 69999999887544 44678888886655 4555532211 0111112233334555555689999998865333
No 173
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=38.46 E-value=31 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCCCcEEEEEEe--CCCCCc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYD--TKASHF 108 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~--~~~~~~ 108 (114)
+.+++ +.|+++++++-|.+.. ++++.|
T Consensus 18 l~~lL-~~l~~~~~~vav~vNg~iv~r~~~ 46 (66)
T PRK05659 18 VAALL-AREGLAGRRVAVEVNGEIVPRSQH 46 (66)
T ss_pred HHHHH-HhcCCCCCeEEEEECCeEeCHHHc
Confidence 55556 5689999999888654 455555
No 174
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=38.41 E-value=88 Score=18.67 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=28.8
Q ss_pred ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 70 NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 70 ~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+++.-.++-+.|.+.+++...|+++++-|.+..-
T Consensus 35 ~p~~l~~lk~dIl~VIsKY~~Id~~~v~i~l~~~ 68 (86)
T PRK00296 35 EPDYLPQLRKEILEVIAKYVQIDPDKVSVQLDKD 68 (86)
T ss_pred CHHHHHHHHHHHHHHHHHheecChhhEEEEEEeC
Confidence 3666778888999999999999999999999843
No 175
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=38.38 E-value=37 Score=23.44 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTV 28 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~ 28 (114)
||-+-|+|+...|.. ..+|++.++..+
T Consensus 1 ~~~~liTTSRkPS~R-tr~Fak~L~~~l 27 (191)
T COG2136 1 MPKMLLTTSRKPSRR-TRSFAKDLSRVL 27 (191)
T ss_pred CCcEEEEecCCccHH-HHHHHHHHHHhC
Confidence 788999999998876 789999988654
No 176
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=38.26 E-value=1.1e+02 Score=19.85 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAIL 85 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l 85 (114)
.+.+.+.+...+++..+.|...+. ......+-.+.-|++++|+-.+.. .+++...+++++|++.+
T Consensus 100 s~~lA~~l~~~l~~~~~~~~rg~~----~~~l~~l~~t~~PavlvE~~f~~n~~D~~~l~~~~~~~~ia~ai~~gi 171 (172)
T cd02696 100 SKRLAEAIQKELVKALGLRNRGVK----QANLYVLRNTKMPAVLVELGFISNPEDAKLLNSPEYQDKIAEAIAEGI 171 (172)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCee----ECCeEEecCCCCCEEEEEecccCCHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 578888999999988875554221 111333345669999999987643 23445667777776654
No 177
>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C). Proteins in this uncharacterised family are described as transmembrane proteins.
Probab=38.03 E-value=72 Score=21.61 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=32.5
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccc
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~ 111 (114)
.+-+.+.+++..+.+++++--.-+.+. +.+.|+++.|+|++
T Consensus 56 ~~w~~R~~iA~~lL~~l~~l~~~~~~~--~~lcDv~~~nfgv~ 96 (188)
T PF12260_consen 56 SPWEQRAKIALQLLELLEELDHGPLGF--FYLCDVSPDNFGVN 96 (188)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCc--EEEeecchHHeEEe
Confidence 457788899999999995554455555 88999999999986
No 178
>PRK12346 transaldolase A; Provisional
Probab=37.49 E-value=1.2e+02 Score=22.64 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=30.1
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+.+++...=+.+.+..-+-++.|.+..++ .||+++|++|.+
T Consensus 92 Vs~EVdp~la~d~e~~i~~A~~l~~l~~~-~gi~~~~i~IKI 132 (316)
T PRK12346 92 VSTEVDARLSFDREKSIEKARHLVDLYQQ-QGIDKSRILIKL 132 (316)
T ss_pred EEEEEccccccCHHHHHHHHHHHHHHhhh-cCCCCCcEEEEe
Confidence 55666543346777777778888888754 599999999975
No 179
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=37.47 E-value=79 Score=18.65 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=16.5
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|.-+.++. +.+.+.+.++..
T Consensus 51 ~~lrIqT~~~~~p~--~al~~a~~~l~~ 76 (83)
T cd06927 51 PVLKIKTDGGVDPL--EALKEAAKRLID 76 (83)
T ss_pred cEEEEEeCCCCCHH--HHHHHHHHHHHH
Confidence 67899998765432 555555555443
No 180
>PTZ00411 transaldolase-like protein; Provisional
Probab=37.35 E-value=1.2e+02 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.1
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+.+++...=+.+.+.--+-++.|.+.+.+ .||+++|++|.+
T Consensus 103 VS~EVd~~ls~d~e~~i~~A~~l~~l~~~-~gi~~~rilIKI 143 (333)
T PTZ00411 103 VSTEVDARLSFDKQAMVDKARKIIKMYEE-AGISKDRILIKL 143 (333)
T ss_pred EEEEEccccccCHHHHHHHHHHHHHhhhh-hcCCCCcEEEEe
Confidence 45555443346777777778888888854 799999999976
No 181
>PF02289 MCH: Cyclohydrolase (MCH); InterPro: IPR003209 Methenyltetrahydromethanopterin cyclohydrolase catalyses the interconversion of methenyltetrahydromethanopterin and N(5)formyltetrahydromethanopterin, and is found in both archaea and bacteria. In methanogenic archaea, such as Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133), this enzyme is involved in the production of methane from carbon dioxide []. In the sulphate-reducer Archaeoglobus fulgidus, this enzyme is involved in the tetrahydromethanopterin-dependent oxidation of lactate []. In Gram-negative methylotrophic bacteria this enzyme is involved in the tetrahydromethanopterin-dependent oxidation of formaldehyde to formate [].; GO: 0018759 methenyltetrahydromethanopterin cyclohydrolase activity, 0006730 one-carbon metabolic process; PDB: 1QLM_A.
Probab=36.98 E-value=43 Score=25.04 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.0
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+.+.+.+.+|++|+++|+...+-
T Consensus 147 v~~~IA~~cgv~p~~l~llvapT 169 (313)
T PF02289_consen 147 VAEKIAEACGVDPENLYLLVAPT 169 (313)
T ss_dssp HHHHHHHHHTS-GGGEEEEEE-S
T ss_pred HHHHHHHHcCCCHHHEEEEEecC
Confidence 78889999999999999998765
No 182
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=36.94 E-value=2e+02 Score=22.84 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=44.7
Q ss_pred CCeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCccEEE---EEEeCCceeeecCCCCCeeEEEEEeeeCCChH
Q 033640 1 MPCLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYVM---IVLKGSVPMSFGGTEDPAAYGELVSIGGLNPD 72 (114)
Q Consensus 1 MP~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i~---v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~ 72 (114)
+|+++|-|-..... ++..+|++.|.+.+--. |.....+- +..+-+..+...|+....+-++|+.++++..-
T Consensus 151 vPLiEIVTePd~~s~eeA~~~~~~L~~ilr~~-gvsdg~me~GslR~DvNVSir~~g~~~~g~RvEIKNlnS~~~i 225 (478)
T TIGR00133 151 APLIEIVTKPDINSPKEARAFLKKLRQILRYL-GISDGNLEEGSMRCDVNVSIRLKGQEHLGTRVEIKNINSFKGI 225 (478)
T ss_pred CceEEEecCCCCCCHHHHHHHHHHHHHHHHHh-CCCCCCcccCceeeeeeeecccCCCCCCcCeeEEeCcccHHHH
Confidence 69999999877544 54678888888777655 65444211 11111222333455556788999999886533
No 183
>PF02290 SRP14: Signal recognition particle 14kD protein; InterPro: IPR003210 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 14 kDa SRP14 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0030942 endoplasmic reticulum signal peptide binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0005786 signal recognition particle, endoplasmic reticulum targeting; PDB: 1914_A 1RY1_D 1E8O_B 2W9J_B.
Probab=36.93 E-value=96 Score=18.69 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCc------ee----eecCCCCCeeEEEEEeeeC------CChHHhHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSV------PM----SFGGTEDPAAYGELVSIGG------LNPDVNKKLSAA 80 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~------~m----~~gg~~~p~~~v~l~~~~~------~~~~~~~~~~~~ 80 (114)
.++|+.+|++++...-++. ..|.++...-. .. ......++.++|..+.-.. ..+++-.+|...
T Consensus 3 ndeFL~~L~~lf~~~~~k~-gSV~lT~KR~~~~~k~~~~~~~~~~~~~~~~~~LiRAt~Gkk~KiSTvV~~~~l~~F~~~ 81 (93)
T PF02290_consen 3 NDEFLSELTKLFEKSKEKG-GSVYLTQKRLDGKTKPKPKKQKPSSSEDKEYPCLIRATNGKKIKISTVVDPDDLDKFWQS 81 (93)
T ss_dssp HHHHHHHHHHHHHHCSSSS-S-EEEEEEEEEE-------------------EEEEEEESSSS-EEEEEEETTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCC-ceEEEEEeecCCCCCCCCccccCCCCCCCCceEEEEEecCCCCeEEEEECHHHHHHHHHH
Confidence 5899999999999988888 66766664210 00 0111224455666652221 246777888888
Q ss_pred HHHHHHhhc
Q 033640 81 ISAILEKKL 89 (114)
Q Consensus 81 i~~~l~~~L 89 (114)
.++.+...+
T Consensus 82 Y~~v~K~~M 90 (93)
T PF02290_consen 82 YANVLKAGM 90 (93)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 888887654
No 184
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=36.92 E-value=53 Score=17.51 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+.+-+.+.+..|++++++.+.|..
T Consensus 20 i~~lK~~i~~~~~~~~~~~~l~~~g 44 (69)
T cd01769 20 VAELKAKIAAKEGVPPEQQRLIYAG 44 (69)
T ss_pred HHHHHHHHHHHHCcChHHEEEEECC
Confidence 4446677777889999998886643
No 185
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=36.88 E-value=73 Score=22.36 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=40.5
Q ss_pred CCccEEEEEEeCCceeeecCCCCCeeEEEE---EeeeCCChHHhHHHHHHHHHHHHhhc--CCCCCcEEEE
Q 033640 34 KPEAYVMIVLKGSVPMSFGGTEDPAAYGEL---VSIGGLNPDVNKKLSAAISAILEKKL--SVPKSRFFIK 99 (114)
Q Consensus 34 kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l---~~~~~~~~~~~~~~~~~i~~~l~~~L--gi~~~ri~I~ 99 (114)
+..++|+=+--....-.++|-.-|+ ..++ ..-+.-+.+...+-+..+..++.++. ||+++||.|-
T Consensus 29 ~NiKwIcP~aP~rpvt~~~G~~~~a-Wfd~~~~~~~~~~d~~~~~~aa~~i~~Li~~e~~~Gi~~~rI~ig 98 (206)
T KOG2112|consen 29 PNIKWICPTAPSRPVTLNGGAFMNA-WFDIMELSSDAPEDEEGLHRAADNIANLIDNEPANGIPSNRIGIG 98 (206)
T ss_pred CCeeEEcCCCCCCcccccCCCcccc-eecceeeCcccchhhhHHHHHHHHHHHHHHHHHHcCCCccceeEc
Confidence 3344554433222334455555553 3333 33344567778888888999998887 8999999874
No 186
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=36.68 E-value=88 Score=18.16 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.5
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
..++.+.....+-.+ |...|+...|+++++..+.+.+
T Consensus 14 ~~~ekr~~~~~Tv~e-------LK~kl~~~~Gi~~~~m~L~l~~ 50 (87)
T PF14560_consen 14 RSVEKRFPKSITVSE-------LKQKLEKLTGIPPSDMRLQLKS 50 (87)
T ss_dssp SEEEEEEETTSBHHH-------HHHHHHHHHTS-TTTEEEEEE-
T ss_pred eeEEEEcCCCCCHHH-------HHHHHHHHhCCCcccEEEEEEe
Confidence 356666555555554 7788889999999999999983
No 187
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=36.65 E-value=58 Score=19.08 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEe
Q 033640 81 ISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.+.+++.-|++++++.+.|.-
T Consensus 37 l~~~y~~~~gi~~~~~rf~f~G 58 (87)
T cd01763 37 LMEAYCQRQGLSMNSVRFLFDG 58 (87)
T ss_pred HHHHHHHHhCCCccceEEEECC
Confidence 5566667779999999999853
No 188
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=36.23 E-value=1e+02 Score=18.67 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+..|+.-.++=+.|.+.+++...|+++.+-|.+..-
T Consensus 33 ~~~pd~l~~Lr~eIl~VI~KYV~id~d~v~v~~e~~ 68 (88)
T COG0851 33 GLQPDYLEQLRKEILEVISKYVQIDPDKVEVSLERD 68 (88)
T ss_pred CCCcchHHHHHHHHHHHHHHHheeCcccEEEEEcCC
Confidence 356777788888999999999999999999988754
No 189
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=36.07 E-value=46 Score=18.19 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+.+-+.+++..|+|+++..+.|..
T Consensus 22 v~~lK~~i~~~~gi~~~~q~L~~~g 46 (71)
T cd01812 22 FGDLKKMLAPVTGVEPRDQKLIFKG 46 (71)
T ss_pred HHHHHHHHHHhhCCChHHeEEeeCC
Confidence 3346677778889999999888764
No 190
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=35.92 E-value=1.5e+02 Score=22.24 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=30.0
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+.+++...=..+.+.--+-++.|.+...+ .||+++|++|.+
T Consensus 91 VS~EVdprls~d~~~~i~~A~~l~~l~~~-~gi~~~~v~IKI 131 (317)
T TIGR00874 91 VSTEVDARLSFDTEATVEKARHLIKLYED-AGVDKKRILIKI 131 (317)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHhHh-cCCCCCcEEEEe
Confidence 55666543346777777778888887744 899999999975
No 191
>PRK01146 DNA-directed RNA polymerase subunit L; Provisional
Probab=35.75 E-value=88 Score=18.55 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=16.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|+-+.++ .+.+.+.+.++..
T Consensus 53 ~~lrIqt~~~~~p--~~al~~a~~~L~~ 78 (85)
T PRK01146 53 PVLKIKTDGGIDP--LEALKEAAKRIID 78 (85)
T ss_pred cEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 7789999865443 3555555555443
No 192
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=35.59 E-value=50 Score=18.04 Aligned_cols=24 Identities=4% Similarity=0.203 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+-+.+++..|+|+++..+.|.
T Consensus 23 v~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 23 VLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEC
Confidence 444666677778999999988874
No 193
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=35.55 E-value=63 Score=19.54 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=21.6
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
...+++-+-.+...+.++|+++.+..++ ++|+-
T Consensus 39 ~k~~K~ai~~Fi~ack~~L~~~~~e~Ft-Isdl~ 71 (89)
T PF06395_consen 39 LKVCKKAIYKFIQACKQELGFPDEELFT-ISDLY 71 (89)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceee-eeccc
Confidence 3344444555666777899999988775 34443
No 194
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=34.99 E-value=58 Score=17.97 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 24 ~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 24 ERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred HHHHHHHhHhhCCChhhEEEEEC
Confidence 44666777788999999888865
No 195
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=34.92 E-value=53 Score=19.87 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=28.1
Q ss_pred eCCChHHhHHHHHHHHHH------HHhhcCCCCCcEEEEEEeC
Q 033640 67 GGLNPDVNKKLSAAISAI------LEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~------l~~~Lgi~~~ri~I~f~~~ 103 (114)
|.+|.++-+++..++... +.+.+|+.+++..+.+-++
T Consensus 40 G~Lse~qiErlG~tLm~Le~~~~~l~~~~gl~~~dLn~dLgpl 82 (88)
T PF05121_consen 40 GSLSEEQIERLGETLMKLEEAMEELCERFGLTPEDLNLDLGPL 82 (88)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhccccccc
Confidence 558888888888877654 7789999999877665443
No 196
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=34.73 E-value=1.2e+02 Score=19.45 Aligned_cols=31 Identities=6% Similarity=0.225 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
...-+.+.++.+.+.||++..++.+.|++..
T Consensus 39 Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~ 69 (135)
T cd00419 39 YPDQCEETARLVAERLGLPFDEYELAYQSRF 69 (135)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEecCCC
Confidence 4555666777778888988889999999843
No 197
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=34.29 E-value=80 Score=22.56 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=28.9
Q ss_pred EEeeeCCChHHhHHHHHHHHHHHHhhcCCC-CCcEE
Q 033640 63 LVSIGGLNPDVNKKLSAAISAILEKKLSVP-KSRFF 97 (114)
Q Consensus 63 l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~-~~ri~ 97 (114)
+-.+||.+++-...|++.|.+..++.+|=. +..+.
T Consensus 4 iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~ 39 (230)
T COG1794 4 IGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELL 39 (230)
T ss_pred eEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhh
Confidence 567899999999999999999999999743 44433
No 198
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=34.18 E-value=1.6e+02 Score=21.98 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=29.5
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+.+++...=+.+.+..-+-++.|.+..++ .||+++|++|.+
T Consensus 91 Vs~EVdp~la~d~~~~i~~A~~l~~~~~~-~gi~~~~i~IKI 131 (313)
T cd00957 91 VSTEVDARLSFDTNATIAKARKLIKLYEE-AGIDKERILIKI 131 (313)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHhHh-cCCCCCcEEEEe
Confidence 55666543346777777778888887744 599999999975
No 199
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=33.91 E-value=80 Score=23.42 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+++|-.+-+++|++|-++-|=+|.|+...+.=||.
T Consensus 87 A~aiR~fAseeL~LPDN~SYR~YadIgRp~vvwnV 121 (376)
T COG4324 87 ASAIRRFASEELALPDNSSYRSYADIGRPDVVWNV 121 (376)
T ss_pred HHHHHHHHHHhccCCCCcceeeeeccCCcceeeee
Confidence 45788899999999999999999999888876663
No 200
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=33.87 E-value=54 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
...-++.+.+.+.+. |||.++|.+
T Consensus 52 ~~~ea~~~~~~l~~~-gvp~~~I~~ 75 (155)
T PF02698_consen 52 GRSEAEAMRDYLIEL-GVPEERIIL 75 (155)
T ss_dssp TS-HHHHHHHHHHHT----GGGEEE
T ss_pred CCCHHHHHHHHHHhc-ccchheeEc
Confidence 444555667777666 999888776
No 201
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=33.77 E-value=1.2e+02 Score=18.94 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=31.1
Q ss_pred eeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccc
Q 033640 65 SIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~ 111 (114)
.++++.-. ++.+.++|.+..+.-+.-..-=+++.+-+++++.+=+|
T Consensus 49 fVN~R~V~-~~~l~~ai~~~y~~~~~~~~~P~~vL~l~ipp~~vDvN 94 (123)
T cd03482 49 YVNGRMVR-DKLISHAVRQAYSDVLHGGRHPAYVLYLELDPAQVDVN 94 (123)
T ss_pred EEcCcEEC-ChHHHHHHHHHHHHhccCCCCcEEEEEEEcChHheeec
Confidence 34555433 46788888888877664444448888989888776555
No 202
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=33.52 E-value=1.1e+02 Score=18.17 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=26.3
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCc
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHF 108 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~ 108 (114)
|.++++.+..+ ..+++.+++.++ ..+.+.|-+....++
T Consensus 2 GSr~~~~~~~~-~~la~~l~~~~~---~~v~~~fle~~~P~l 39 (105)
T PF01903_consen 2 GSRDPEANAEL-EDLADRLRERLP---VPVEVAFLEFAEPSL 39 (105)
T ss_dssp STSSCHHHHHH-HHHHHHHHHHTS---SEEEEEESSCCCSCC
T ss_pred CCCCHHHHHHH-HHHHHHHHhhcC---CeEEEEEEecCCCCH
Confidence 55666666555 568888888888 677777766554444
No 203
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=33.42 E-value=81 Score=18.94 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=15.9
Q ss_pred HHHHHHHHhhcCC-CCCcEEEEEEe
Q 033640 79 AAISAILEKKLSV-PKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi-~~~ri~I~f~~ 102 (114)
+.+.++|.+.|++ +.+.+|+.+..
T Consensus 29 ~~vi~fLrk~Lk~~~~~slFlYin~ 53 (87)
T PF04110_consen 29 ATVIAFLRKKLKLKPSDSLFLYINN 53 (87)
T ss_dssp HHHHHHHHHHCT----SS-EEEEEE
T ss_pred HHHHHHHHHHhCCccCCeEEEEEcC
Confidence 4589999999998 46777776654
No 204
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=33.18 E-value=60 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=23.0
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
+-|-|.+-. ++..+ +..|.+.+.+++||+.++|.|.
T Consensus 161 v~VvV~~~~-L~~~~----~~~I~diV~~~~~v~~~~I~V~ 196 (196)
T PF12685_consen 161 VDVVVKADK-LSDAE----AAQIIDIVMRETGVPAENISVT 196 (196)
T ss_dssp EEEEEE-S----HHH----HHHHHHHHHHHHC-STSEEEEE
T ss_pred EEEEEeCCC-CCHHH----HHHHHHHHHHHhCCCcCeEEeC
Confidence 445554333 55444 5679999999999999999874
No 205
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=33.16 E-value=98 Score=22.27 Aligned_cols=29 Identities=7% Similarity=0.271 Sum_probs=22.4
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
.+.+.+.++.+.+.+.+. +.||+++|+++
T Consensus 131 ~t~~~~~~~l~~~v~~a~-~~GI~~~~Iil 159 (261)
T PRK07535 131 KDAEDRLAVAKELVEKAD-EYGIPPEDIYI 159 (261)
T ss_pred CCHHHHHHHHHHHHHHHH-HcCCCHhHEEE
Confidence 356666777777777774 88999999986
No 206
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=33.15 E-value=2.1e+02 Score=21.56 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=26.9
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..++.+.-.+..+.+.+.+. .+|++.-||-|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~-~~gi~~PrIaV~ 208 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALE-KLGIKNPKIAVA 208 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHH-HhCCCCCCEEEE
Confidence 45789999999999999998 899998887664
No 207
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=33.03 E-value=1e+02 Score=18.15 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=16.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|..+.++ .+.+.+.+.++..
T Consensus 51 ~~lrI~T~~~~~P--~~al~~a~~~l~~ 76 (83)
T cd07027 51 IQIRIQTKSGIKP--KDALKRAVNKLSK 76 (83)
T ss_pred cEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 6789999865443 3556655555543
No 208
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=32.80 E-value=50 Score=24.70 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+++.+.+.+||+|+++|+...+-
T Consensus 148 v~e~vA~~cgv~p~~v~~lvapT 170 (317)
T PRK02264 148 VAEKVAEECGVDPENVYLLVAPT 170 (317)
T ss_pred HHHHHHHHcCCCHHHEEEEEecC
Confidence 78889999999999999988765
No 209
>PRK05269 transaldolase B; Provisional
Probab=32.29 E-value=1.8e+02 Score=21.75 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=29.6
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+.+++...=+.+.+.--+-++.|.+.+++ .||+++|++|.+
T Consensus 93 Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~-~gi~~~~v~IKI 133 (318)
T PRK05269 93 VSTEVDARLSFDTEATIAKARKLIALYEE-AGISKDRILIKI 133 (318)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHhhh-cCCCCCcEEEEe
Confidence 55666443346677777778888888754 799999999975
No 210
>PRK12449 acyl carrier protein; Provisional
Probab=32.11 E-value=64 Score=18.30 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcE
Q 033640 74 NKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
+.+..+.+.+.+.+.+++++.++
T Consensus 3 ~~~i~~~l~~il~~~~~~~~~~i 25 (80)
T PRK12449 3 REEIFERLINLIQKQRSYLSLAI 25 (80)
T ss_pred HHHHHHHHHHHHHHHhCCCcccc
Confidence 45667789999999999987763
No 211
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=31.98 E-value=65 Score=19.06 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=22.4
Q ss_pred EEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 61 v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+++.-.|.-+|..+ .|-+-|.+.++++++.|+|.=-.
T Consensus 3 ~~v~h~g~~Tpsr~-----ei~~klA~~~~~~~~~ivv~~~~ 39 (84)
T PF01282_consen 3 FEVLHPGKPTPSRK-----EIREKLAAMLNVDPDLIVVFGIK 39 (84)
T ss_dssp EEEE-SSSSS--HH-----HHHHHHHHHHTSTGCCEEEEEEE
T ss_pred EEEECCCCCCCCHH-----HHHHHHHHHhCCCCCeEEEeccE
Confidence 34444454455542 36667778889999999886443
No 212
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=31.81 E-value=46 Score=20.83 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCCCc
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTKASHF 108 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~ 108 (114)
+....+.+.+ +|++++++.+.+.-++.+.+
T Consensus 147 S~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 147 SESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp SHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred CHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 4566778888 99999999999888876543
No 213
>smart00646 Ami_3 Ami_3.
Probab=31.76 E-value=1.2e+02 Score=18.27 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeee
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIG 67 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~ 67 (114)
...+.+.+...+.+.+|.+.+.+.- +.......+.-|++++|+--+-
T Consensus 42 ~~~la~~i~~~l~~~~~~~~rg~~~----~~~~~l~~~~~PavlvE~gfis 88 (113)
T smart00646 42 SRALASIIQKSLVKNTGLRDRGVKE----ANFAVLRETNMPAVLVELGFIT 88 (113)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeee----CCEEEEcCCCCCeeeEEecccC
Confidence 5678888888888888766665432 2344445567999999997653
No 214
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=31.72 E-value=66 Score=15.69 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.+.+.+.+..|+++++..+.+..
T Consensus 21 ~~l~~~i~~~~~~~~~~~~l~~~~ 44 (69)
T cd00196 21 ADLKEKLAKKLGLPPEQQRLLVNG 44 (69)
T ss_pred HHHHHHHHHHHCcChHHeEEEECC
Confidence 335566667778888887776543
No 215
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=31.37 E-value=92 Score=16.80 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=24.5
Q ss_pred eeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 65 SIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+|+++......+=-++.-.+.+.++++..++++.
T Consensus 6 GLGsf~~~~~a~~QLA~ll~l~~~l~~~~~~v~~y 40 (56)
T PF07985_consen 6 GLGSFSSSRSARYQLALLLLLKEELSIPRDQVSIY 40 (56)
T ss_pred EecCccccccHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 34555555555555567777889999998888775
No 216
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=31.32 E-value=1.8e+02 Score=19.99 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=49.4
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEee----eC-CChHH-hH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSI----GG-LNPDV-NK 75 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~----~~-~~~~~-~~ 75 (114)
|...+..+-+..+. ..+-+.++...+++.++.......+..+.+ +..|-+.+-+..+ |. +++.. ..
T Consensus 56 ~~~h~i~Sf~~~e~-~~e~~~~~~~~~~~~~~~~~~~~v~~~H~D-------~~h~H~Hivin~v~~~tGk~~~~~~~~~ 127 (242)
T PF03432_consen 56 PVYHIIISFPPDEL-TPEQAHEIAREFAEEMGPGNHQYVVVVHTD-------TDHPHVHIVINRVDLDTGKKLNPSNKDY 127 (242)
T ss_pred eEEEEeccCCcccc-CHHHHHHHHHHHHHHcCCCCcceEEEECCC-------cCeeeeeEEEeecccccccccccchhHH
Confidence 44555566665542 456777888888888886444444444544 3444444444433 22 22333 55
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 033640 76 KLSAAISAILEKKLSVPK 93 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~ 93 (114)
...+.+++.+..+.|+..
T Consensus 128 ~~~~~~~~~l~~~~gl~~ 145 (242)
T PF03432_consen 128 RRLREASDELEKEYGLSV 145 (242)
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 666778888888888754
No 217
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=31.15 E-value=71 Score=18.26 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+.+-+.+++..|++++|..+.|.-
T Consensus 24 V~~LK~~I~~~~~~~~~~qrL~~~G 48 (78)
T cd01804 24 VEGLKKRISQRLKVPKERLALLHRE 48 (78)
T ss_pred HHHHHHHHHHHhCCChHHEEEEECC
Confidence 4456677778889999999998763
No 218
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=31.06 E-value=57 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 033640 77 LSAAISAILEKKLSVPKSRFFIKFYDTKA 105 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~ 105 (114)
....+.....+.||||+++|.|..-|-+.
T Consensus 619 ~~T~~aQiaAe~LGip~e~V~v~~~DT~~ 647 (848)
T TIGR03311 619 LGTVLTQIVCETTGLPPEVIVCELPDTAL 647 (848)
T ss_pred HHHHHHHHHHHHHCCCHHHEEEEcCCCCC
Confidence 34557788889999999999999887543
No 219
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=30.92 E-value=1.2e+02 Score=18.01 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=16.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|+-+.++. +.+.+.+.++..
T Consensus 51 ~~lriqT~~~~~p~--~al~~a~~~l~~ 76 (85)
T cd07029 51 INLRIQTKGGEPAV--DVLKKGLEDLEQ 76 (85)
T ss_pred cEEEEEeCCCCCHH--HHHHHHHHHHHH
Confidence 67899998765443 555555554443
No 220
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=30.88 E-value=1.3e+02 Score=21.30 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=27.7
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+|++.+..+.+.|++.+.+.-.=+..++++++.
T Consensus 88 ~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIA 120 (224)
T PF09623_consen 88 RTEEDNEAFADFIYRLIRELKQDPGRRLHVSIA 120 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 579999999999999998877766788888763
No 221
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=30.81 E-value=62 Score=17.85 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+.+-+.+++..|+|+++..+.|.-
T Consensus 21 V~~lK~~i~~~~gi~~~~q~Li~~G 45 (70)
T cd01798 21 IKQLKEVVAKRQGVPPDQLRVIFAG 45 (70)
T ss_pred HHHHHHHHHHHHCCCHHHeEEEECC
Confidence 3456777888889999998887753
No 222
>PLN02833 glycerol acyltransferase family protein
Probab=30.75 E-value=1.1e+02 Score=23.45 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=36.2
Q ss_pred CeeEEEEEeeeCCC---hHHhHHHHHHHHHHHHhhcCCC--CCcEEEEEEeCCC
Q 033640 57 PAAYGELVSIGGLN---PDVNKKLSAAISAILEKKLSVP--KSRFFIKFYDTKA 105 (114)
Q Consensus 57 p~~~v~l~~~~~~~---~~~~~~~~~~i~~~l~~~Lgi~--~~ri~I~f~~~~~ 105 (114)
|...+++.....++ .+..+++++.+.+.+.+.+|++ +=+.|+.+..+++
T Consensus 302 ~~~~v~V~~LpPi~~~~~e~~~efA~rv~~~Ia~~lgi~~~~wdg~lk~~~~~~ 355 (376)
T PLN02833 302 WAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGLKKVPWDGYLKYYRPSP 355 (376)
T ss_pred CceEEEEEECCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCceeecCCCh
Confidence 34567777665543 3568999999999999999997 5677777766543
No 223
>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length. The function of this family is unknown.
Probab=30.67 E-value=1.4e+02 Score=21.98 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=36.3
Q ss_pred CCeeEEEEEe------eeCCC-hHHhHHHHHHHHHHHHhhcCCCCCcE-----EEEEEeCCC
Q 033640 56 DPAAYGELVS------IGGLN-PDVNKKLSAAISAILEKKLSVPKSRF-----FIKFYDTKA 105 (114)
Q Consensus 56 ~p~~~v~l~~------~~~~~-~~~~~~~~~~i~~~l~~~Lgi~~~ri-----~I~f~~~~~ 105 (114)
||+++++=+. .-+.+ ..+++.|.....+..++.+.++.+.+ |+.+.+..+
T Consensus 186 DP~~Ll~~~V~~vN~~Y~~lT~~aE~~~fv~s~l~~v~~~~~~~~~eifi~~~Yl~L~e~~~ 247 (308)
T PF07387_consen 186 DPVCLLENQVNMVNIEYESLTQEAEVKVFVKSCLKLVEKQRSAETEEIFIKDGYLNLKEVNP 247 (308)
T ss_pred ChhhhhhheeeEEeeeccccChHHHHHHHHHHHHHHHHHHhcCcHhhhcccccEEEccccCC
Confidence 6766554321 12344 56788999999999999999999999 776666653
No 224
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.64 E-value=1.1e+02 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=24.0
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
.+.+.+.++.+.+.+.+.+.-|++++|+++
T Consensus 134 ~t~~~~~~~~~~~~~~~~~~~gi~~~~Iii 163 (252)
T cd00740 134 KTRDKKVEIAERAYEALTEFVGFPPEDIIF 163 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 456667778888888887788999999987
No 225
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=30.41 E-value=2.4e+02 Score=21.29 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEe-----eeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 24 ATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVS-----IGGLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~-----~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
=++.+++.+|..+ ++| .+.+..-..++++.+. ...++.+.-.+..+.+.+.+++. ||+.-||-|
T Consensus 139 hTe~La~~~~~~~-~~M---------ml~~~~LrV~lvT~HipL~~V~~~it~e~i~~~i~~~~~~l~~~-gi~~PrIaV 207 (332)
T PRK00232 139 HTEFFAELSGTTG-VVM---------MLATEGLRVALVTTHLPLRDVADAITPERLEEVIRILHADLRRK-GIAEPRIAV 207 (332)
T ss_pred HHHHHHHHhCCCC-eEE---------EEecCCeEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHh-CCCCCcEEE
Confidence 3577777777532 222 2222222334444442 24578999999999999999978 998888765
Q ss_pred E
Q 033640 99 K 99 (114)
Q Consensus 99 ~ 99 (114)
.
T Consensus 208 ~ 208 (332)
T PRK00232 208 C 208 (332)
T ss_pred E
Confidence 4
No 226
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=30.13 E-value=60 Score=24.26 Aligned_cols=23 Identities=9% Similarity=0.067 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+++.+.+.+||+|+++|+...+-
T Consensus 147 v~~~vA~~cgv~p~~l~~lvapT 169 (312)
T cd00545 147 VAEKVAAECGVDPENVTLIVAPT 169 (312)
T ss_pred HHHHHHHHcCCCHHHEEEEEecC
Confidence 78889999999999999988765
No 227
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=30.01 E-value=1.2e+02 Score=20.10 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.3
Q ss_pred eeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHH
Q 033640 48 PMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAI 84 (114)
Q Consensus 48 ~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~ 84 (114)
.+.|-+..+-.-...+++.+++++.+++.+...|..+
T Consensus 103 ~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf 139 (147)
T COG5435 103 RQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSF 139 (147)
T ss_pred EEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 3444444455555666788899999998888776554
No 228
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=29.81 E-value=58 Score=27.92 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
|++-.+---+++.+.||||++||.- . ..-|..+|
T Consensus 162 K~eaI~~a~e~lt~~lgi~~~~I~~--~---enfW~~GG 195 (900)
T PRK13902 162 KDETVEYCFEFFTKELGIDPEEITF--K---ESWWEGGG 195 (900)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHeee--c---ccccCCCC
Confidence 4556666778888999999999854 2 23565555
No 229
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=29.65 E-value=1.2e+02 Score=17.74 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCCCC-CcEEEEEEeCC
Q 033640 79 AAISAILEKKLSVPK-SRFFIKFYDTK 104 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~-~ri~I~f~~~~ 104 (114)
+.+++.+.+.|++.. ..+.+.|.|-+
T Consensus 23 ~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 23 TELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred HHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 347777888888876 89999999877
No 230
>KOG2772 consensus Transaldolase [Carbohydrate transport and metabolism]
Probab=29.61 E-value=1.4e+02 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
-+-++-|.+.. ++.||+.+|++|.+-.
T Consensus 121 vekA~~Likly-~~~gv~k~rvliKI~s 147 (337)
T KOG2772|consen 121 VEKARHLIKLY-NEEGVPKERVLIKIAS 147 (337)
T ss_pred HHHHHHHHHHH-HhcCCChheEEEeccc
Confidence 33444566666 6679999999998743
No 231
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=29.57 E-value=1.3e+02 Score=18.10 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
.+.....+.+.++.++|-|..| ++..|. ..+.-=+++++.-..+...+.+.+.+ ++++
T Consensus 38 ~~~~~~~~~~fl~~~~gg~~~y------~g~~~~-----------~~H~~~~I~~~~f~~~l~~l~~al~~-~~~~ 95 (116)
T cd00454 38 LEEHRAKLADFLTQVLGGPGLY------RGHPML-----------RRHLPFPITEEEFDAWLELLRDALDE-LGVP 95 (116)
T ss_pred hHHHHHHHHHHHHHHcCCCCCC------CCCChh-----------hhhcCCCCCHHHHHHHHHHHHHHHHH-hCCC
Confidence 5778889999999999999877 222221 11111158899988888888888844 4665
No 232
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=29.24 E-value=63 Score=24.13 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+++.+.+.+||+|+++|+...+-
T Consensus 147 v~~~vA~~cgv~p~~l~~lvapT 169 (312)
T TIGR03120 147 VAEYIADECGVDPENLTLLVAPT 169 (312)
T ss_pred HHHHHHHHcCCCHHHEEEEEecC
Confidence 78889999999999999988765
No 233
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=29.20 E-value=68 Score=17.67 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+-+.+++..|+|+++..+.|.
T Consensus 23 V~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 23 IENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred HHHHHHHHHHHhCCCHHHeEEEEC
Confidence 455677777888999999888874
No 234
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=70 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
..+.+.+.+.+|||+|+..|.|--
T Consensus 27 ~~lke~Vak~~gvp~D~L~viFaG 50 (446)
T KOG0006|consen 27 FQLKEVVAKRQGVPADQLRVIFAG 50 (446)
T ss_pred HHHHHHHHHhhCCChhheEEEEec
Confidence 447788889999999999999853
No 235
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=29.07 E-value=1.9e+02 Score=19.80 Aligned_cols=61 Identities=15% Similarity=0.367 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeC-CceeeecCCCCCeeEEEEEe-eeCC--ChHHhHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKG-SVPMSFGGTEDPAAYGELVS-IGGL--NPDVNKKLSA 79 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~-~~~m~~gg~~~p~~~v~l~~-~~~~--~~~~~~~~~~ 79 (114)
.+.+..++.+.+.+.++ ...++|.++- ..+|..-|..++.+...-.. .|.+ +++.+.++-.
T Consensus 112 QERLT~qIa~~l~~~l~--p~gV~V~i~A~H~Cm~~RGv~~~~s~t~T~a~~G~f~~d~~~r~ef~~ 176 (179)
T PF01227_consen 112 QERLTRQIADALEEILG--PKGVAVVIEAEHMCMTMRGVRKPGSRTVTSAFRGAFAEDPSLRQEFLS 176 (179)
T ss_dssp HHHHHHHHHHHHHHHHT--SSEEEEEEEEEEHHHHSSTTT-SS-EEEEEEEEEHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCeEEEEEEeccCCccccCccCCCCEEEEEEEEeEeCCCHHHHHHHHH
Confidence 57788888888888886 3455555542 23555567766655444444 4434 5666655544
No 236
>PF13092 CENP-L: Kinetochore complex Sim4 subunit Fta1
Probab=29.05 E-value=1.1e+02 Score=20.38 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=25.4
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCC--cEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKS--RFFIKF 100 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~--ri~I~f 100 (114)
.+.++...+.+++.+++.++++++-+ .+.+.=
T Consensus 109 ~~~~~~~~F~~aL~~y~~~hl~l~L~~~~~~L~k 142 (162)
T PF13092_consen 109 ETQEEVSPFMEALSSYFYRHLALDLDHPAVRLSK 142 (162)
T ss_pred cccccccHHHHHHHHHHHHHhCCCcccceeEEEE
Confidence 44677788999999999999999988 444443
No 237
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=29.03 E-value=72 Score=21.01 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhhcC----CCCCcEEEE
Q 033640 74 NKKLSAAISAILEKKLS----VPKSRFFIK 99 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lg----i~~~ri~I~ 99 (114)
..++-+++++++.+..| +++++|.+.
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt 123 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDADMIVLS 123 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccchhheEEc
Confidence 45677788888888866 568887764
No 238
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=29.00 E-value=1.3e+02 Score=17.79 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.2
Q ss_pred CeeEEEEEeeeC-CChHHhHHH
Q 033640 57 PAAYGELVSIGG-LNPDVNKKL 77 (114)
Q Consensus 57 p~~~v~l~~~~~-~~~~~~~~~ 77 (114)
.+.++|++..++ ++++|+.-+
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~ 83 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWI 83 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHH
Confidence 489999998866 678886554
No 239
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=28.88 E-value=85 Score=17.86 Aligned_cols=23 Identities=4% Similarity=0.260 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|++++|..+.|.
T Consensus 25 ~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 25 GDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred HHHHHHHHHHhCCChHHEEEEeC
Confidence 34556666777999999999875
No 240
>PF15603 Imm45: Immunity protein 45
Probab=28.47 E-value=1.3e+02 Score=17.78 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=33.9
Q ss_pred cEEEEEEeCC------ceeeecCCCCCe-eEEEEEeee---------CCChHHhHHHHHHHHHHHHhh
Q 033640 37 AYVMIVLKGS------VPMSFGGTEDPA-AYGELVSIG---------GLNPDVNKKLSAAISAILEKK 88 (114)
Q Consensus 37 ~~i~v~~~~~------~~m~~gg~~~p~-~~v~l~~~~---------~~~~~~~~~~~~~i~~~l~~~ 88 (114)
+++.+.+..+ ..|.+++.+++. ..+-..++. .++..+..+...++.+.+.+.
T Consensus 8 s~i~~el~~G~~~~~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~ 75 (82)
T PF15603_consen 8 SYITFELEEGARRKAQGEMLLTGNDNDGDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSER 75 (82)
T ss_pred CceEEEecCCEEEEEeeeEEEeccCCCcCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence 4555555544 356666666665 444555664 478888899999998888543
No 241
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=28.35 E-value=71 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCCCCCcc
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTKASHFN 109 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g 109 (114)
..+++...+.||+|.++|.|..-|-+..-|+
T Consensus 472 T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~ 502 (746)
T TIGR03194 472 TIASQVAAEVLGVRLSRIRVISADSALTPKD 502 (746)
T ss_pred HHHHHHHHHHhCCCHHhEEEEccCCCCCCCC
Confidence 3467778889999999999998776444443
No 242
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=27.85 E-value=1.2e+02 Score=17.59 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=14.3
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTV 28 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~ 28 (114)
|.++|+|+...+. .+.+.+.+..+.
T Consensus 43 i~l~Iqt~~~~~p--~~~l~~a~~~l~ 67 (77)
T PF13656_consen 43 INLRIQTKGGITP--IEALKKALEDLI 67 (77)
T ss_dssp EEEEEEESTTS-H--HHHHHHHHHHHH
T ss_pred eEEEEEECCCCCH--HHHHHHHHHHHH
Confidence 5688899865443 255555554443
No 243
>PF08652 RAI1: RAI1 like PD-(D/E)XK nuclease; InterPro: IPR013961 RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease []. It is required for 5.8S rRNA processing []. ; PDB: 3FQD_B 3FQG_A 3FQI_A 3FQJ_A.
Probab=27.79 E-value=1.2e+02 Score=17.10 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCeeEEEEEeeeC-CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 55 EDPAAYGELVSIGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 55 ~~p~~~v~l~~~~~-~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..|.-|+||++... .++.+...+-+.+...-.+.+=+.-.+|++=|.|-+
T Consensus 13 ~~~~~yvELKT~~~~~~~~~~~~f~rKllkwW~QsfL~Gi~~IvvG~Rd~~ 63 (69)
T PF08652_consen 13 DSPGNYVELKTSKDIMSPKQWSNFERKLLKWWLQSFLVGIPRIVVGFRDDD 63 (69)
T ss_dssp STTCCEEEEEEEE---SHCCCHHHHHHHHHHHHHHHCTT--EEEEEEE-TT
T ss_pred CCCCcEEEEeeeccccCchHHHHHhHHHHHHHHHHhccCCCEEEEEEeCCC
Confidence 45678999998774 345566666667777766777677789999888764
No 244
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=27.73 E-value=62 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCC--CCCcccc
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTK--ASHFNFL 111 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~--~~~~g~~ 111 (114)
..+++...+.|||+.++|.|..-|-. |..+|..
T Consensus 503 T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~ 537 (770)
T TIGR02416 503 TTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTY 537 (770)
T ss_pred HHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCc
Confidence 34777788899999999999988753 3444443
No 245
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=27.51 E-value=60 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
...++....++|||+.++|.|..-|-+
T Consensus 474 ~T~laQIaAe~LGi~~d~V~v~~~DT~ 500 (758)
T TIGR02965 474 NTKVAQVVAEEFQVDIDRVKITATDTD 500 (758)
T ss_pred HHHHHHHHHHHhCCCHHHEEEEecCcc
Confidence 345778888999999999999987654
No 246
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=27.49 E-value=1.9e+02 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
+.++-+.+...+...||.||+.+.-.|.|-+
T Consensus 200 ~~~~~~~iy~il~~~lG~pP~~F~~~y~dkd 230 (437)
T cd00585 200 KEEMLKEVYRILAIALGEPPEKFDWEYRDKD 230 (437)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 5667788888999999999999999887765
No 247
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=27.49 E-value=67 Score=26.80 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE-e--CCCCCccc
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY-D--TKASHFNF 110 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~-~--~~~~~~g~ 110 (114)
...++....+.||++.++|.+... | ..|..+|.
T Consensus 487 ~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt 522 (759)
T PRK09970 487 DTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGA 522 (759)
T ss_pred HHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCC
Confidence 345777888899999999999865 3 33444443
No 248
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=27.25 E-value=1e+02 Score=16.09 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=15.9
Q ss_pred CCChHHhHHHHHHHHHHHHh
Q 033640 68 GLNPDVNKKLSAAISAILEK 87 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~ 87 (114)
...+++++.+++.+++.+.+
T Consensus 23 ~V~~~qR~~iAe~Fa~AL~~ 42 (44)
T PF07208_consen 23 SVPPAQRQAIAEKFAQALKS 42 (44)
T ss_dssp CS-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 46789999999999988865
No 249
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=27.21 E-value=93 Score=21.23 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCChHHhHHHHHHHHHHHHhhcC-CCCCcEEEEEEeCCCC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLS-VPKSRFFIKFYDTKAS 106 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lg-i~~~ri~I~f~~~~~~ 106 (114)
..++++.+++.+...+++++.+| ...-..+|...|-.||
T Consensus 94 ~~~~e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH 133 (196)
T PF01076_consen 94 DLDPEQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPH 133 (196)
T ss_pred chhhHHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcc
Confidence 35778889999999999999998 5566667777776665
No 250
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=27.19 E-value=31 Score=25.59 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=50.9
Q ss_pred eCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHh
Q 033640 8 TNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEK 87 (114)
Q Consensus 8 tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~ 87 (114)
+-|.++.+..+-+.-.|+..+.++||- |+.|.|.+..++ +--.-..+| -.++|...|=++...-++|...|-.+|-.
T Consensus 33 kkVDmsKvnleVlkPWItkrvneilgf-EDdVViefvynq-Lee~k~ldp-kkmQiNlTGFLngrnAreFmgeLW~LliS 109 (354)
T KOG2146|consen 33 KKVDMSKVNLEVLKPWITKRVNEILGF-EDDVVIEFVYNQ-LEEAKNLDP-KKMQINLTGFLNGRNAREFMGELWSLLIS 109 (354)
T ss_pred hhcchhhcchhhhhHHHHHHHHHhhcc-ccchhHHHHHHH-HhhhcCCCc-hheeeeeehhcccccHHHHHHHHHHHHHh
Confidence 345556665666777999999999998 555655554432 222234467 46888877766666667788877777653
No 251
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=26.83 E-value=1e+02 Score=19.77 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKP 35 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (114)
|-++-|+-|.+... .+.|..+++++.++.+=-|
T Consensus 79 mkf~~iH~n~s~~N--~rsF~qevHely~ktLmsp 111 (136)
T COG5603 79 MKFLFIHQNQSRKN--ARSFLQEVHELYAKTLMSP 111 (136)
T ss_pred ceEEEEeccchhhh--HHHHHHHHHHHHHHHhhCc
Confidence 55777888887554 5899999999999976544
No 252
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=26.74 E-value=2.1e+02 Score=19.53 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=50.7
Q ss_pred CcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 14 GVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 14 ~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
+..+..|+-.+...+-+.-...+...-+...+-+.+-.-.++++. .-|.++....++..+++...|.+
T Consensus 19 SvR~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~--~pi~~vd~y~~~~t~aw~~ki~~---------- 86 (199)
T KOG4530|consen 19 SVRKKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPLINTDLEV--NPIKSVDEYYPPVTEAWRQKILE---------- 86 (199)
T ss_pred hhhhcccCHHHHHHHHHhhhccCCCCceEEEeccCCccccCCccc--CccccccccCcHHHHHHHHHHhh----------
Confidence 344567777777777655555455555555554555555566653 33778887778887777776543
Q ss_pred CcEEEEEEeCCCCCcccc
Q 033640 94 SRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 94 ~ri~I~f~~~~~~~~g~~ 111 (114)
.+.++..++- -|||+.
T Consensus 87 aD~ivFvtPq--YN~gyp 102 (199)
T KOG4530|consen 87 ADSIVFVTPQ--YNFGYP 102 (199)
T ss_pred cceEEEeccc--ccCCCc
Confidence 3444443333 688875
No 253
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=26.73 E-value=41 Score=19.50 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=14.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+.+.+.+|+++++++..+.
T Consensus 22 ~~~~~~~~~lgi~~~~~~~~~~ 43 (90)
T PF08541_consen 22 KILDSIAKRLGIPPERFPDNLA 43 (90)
T ss_dssp HHHHHHHHHHTS-GGGBE-THH
T ss_pred HHHHHHHHHcCCcHHHHHHHHh
Confidence 3455566788999999886553
No 254
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=26.70 E-value=2.3e+02 Score=21.80 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=29.4
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+.+++...=+.+.+.--+-++.|.+.++ +.||+++|++|.+
T Consensus 97 Vs~EVdprl~~d~~~~i~~A~~l~~~~~-~~gi~~~~v~IKI 137 (391)
T PRK12309 97 VSTEVDARLSYDTEATIAKARKLISLYE-DAGISRDRVLIKI 137 (391)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHhh-hhcCCCCcEEEEe
Confidence 5566644334667777777778877774 6799999999975
No 255
>CHL00124 acpP acyl carrier protein; Validated
Probab=26.68 E-value=56 Score=18.66 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCc
Q 033640 74 NKKLSAAISAILEKKLSVPKSR 95 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~r 95 (114)
+.+....+.+.+.+.+|++++.
T Consensus 3 ~~~i~~~l~~ii~~~~~~~~~~ 24 (82)
T CHL00124 3 KNDIFEKVQSIVAEQLGIEKSE 24 (82)
T ss_pred HHHHHHHHHHHHHHHHCCCHHH
Confidence 3456777888888889988765
No 256
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=26.53 E-value=1.5e+02 Score=17.76 Aligned_cols=37 Identities=8% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCChHHhHHHHHHHHHHHHhhcC-CCCCcEEEEEEeCC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLS-VPKSRFFIKFYDTK 104 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lg-i~~~ri~I~f~~~~ 104 (114)
..+|+.-.++-+.|.+.+++... |+++++-|.+..-.
T Consensus 33 ~~~p~~l~~lk~eil~VIsKYv~~Id~~~i~V~l~~~~ 70 (87)
T PRK13991 33 KLTPEMMEQMKADLAEVIKRYVPAIDAEAIEVTLSRGE 70 (87)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcccCccceEEEEEeCC
Confidence 35788888888999999999997 99999999987753
No 257
>PRK06437 hypothetical protein; Provisional
Probab=26.50 E-value=34 Score=19.18 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=13.3
Q ss_pred HHHHHHhhcCCCCCcEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~ 99 (114)
+.+++ ++||++++.+-|.
T Consensus 23 v~dLL-~~Lgi~~~~vaV~ 40 (67)
T PRK06437 23 VNDII-KDLGLDEEEYVVI 40 (67)
T ss_pred HHHHH-HHcCCCCccEEEE
Confidence 55556 6689999888665
No 258
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=26.49 E-value=1.5e+02 Score=25.19 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=26.1
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
.++++|-++++++. .+.+..|+||++|.+
T Consensus 162 ~t~eRK~eIakR~y-~l~~~~gfpp~dIIf 190 (842)
T COG1410 162 RTAERKFEIAKRAY-ILTEEVGFPPEDIIF 190 (842)
T ss_pred ccHHHHHHHHHHHH-HHHHhcCCCchheee
Confidence 68999999999999 899999999998764
No 259
>PRK11835 hypothetical protein; Provisional
Probab=26.40 E-value=1.8e+02 Score=18.43 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred CcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC
Q 033640 14 GVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG 68 (114)
Q Consensus 14 ~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~ 68 (114)
.+..-..+..+++.++++ ..+.-.+.++....+++...++-++.+.++..|.
T Consensus 51 g~~aw~vm~~L~~sL~ei---qv~~~ivEweGepCLFv~~~DE~aa~CrLKn~GV 102 (114)
T PRK11835 51 GDNAWSVMQKLSQALSDI---QVPCSVLECEGEPCLFVNRQDESAATCRLKNFGV 102 (114)
T ss_pred ChhHHHHHHHHHHHHHhh---cccceEEEecCCceEEEecccchhhheeeccCcE
Confidence 333457888888888875 4556677888767788887888899999998774
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.39 E-value=3.5e+02 Score=21.91 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=55.7
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEE-----eeeC----CC--
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELV-----SIGG----LN-- 70 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~-----~~~~----~~-- 70 (114)
=++.|.-++-.+.+ ..++.+.+-+.+....+.-...-.+.+.+.+...-+....|+.++..+ .+++ +|
T Consensus 280 ~il~i~~~~l~~e~-l~e~~~ki~~~f~~~~~~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l~~ltF~iSp~ 358 (534)
T KOG2187|consen 280 AILTIHPCKLATEE-LTELKKKIEQRFLSGPGFASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESLLGLTFRISPG 358 (534)
T ss_pred EEEEEEeecccHHH-HHHHHHHHHHHHhcccccccceeEEEEecccccccCCCCCCeEEEccccEEEeecCCeEEEECCc
Confidence 34556666655544 667777777777666665444322234443333333222455555443 1122 23
Q ss_pred --hHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 71 --PDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 71 --~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
-+.|-..++.+...+.+++|++++.+.+
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~ll 388 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLL 388 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEE
Confidence 3557888889999999999999995443
No 261
>COG4099 Predicted peptidase [General function prediction only]
Probab=26.30 E-value=90 Score=23.67 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
....+.|-+.+.++..|+.+||||.=.
T Consensus 250 ~~~idli~~vlas~ynID~sRIYviGl 276 (387)
T COG4099 250 IEKIDLILEVLASTYNIDRSRIYVIGL 276 (387)
T ss_pred HHHHHHHHHHHhhccCcccceEEEEee
Confidence 455667777889999999999999643
No 262
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=26.29 E-value=1.7e+02 Score=18.73 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=23.8
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCC--CcEEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPK--SRFFIKFY 101 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~--~ri~I~f~ 101 (114)
++++.++.+.+.|++.+.+.-. .+ +|+++++.
T Consensus 65 ~t~~d~~~~~~~I~~~i~~l~~-~~~~~~lh~~ia 98 (124)
T TIGR03642 65 LSDEDILTFMSIAAKEVKKERE-NYGCERIIVNIS 98 (124)
T ss_pred CCHHHHHHHHHHHHHHHHHHhh-CCCcceEEEEec
Confidence 5789999999999999865543 33 38888763
No 263
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=26.28 E-value=2.5e+02 Score=20.18 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=47.7
Q ss_pred HHHHH--HHHHHHHhCCCccEEEEEEeC---CceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHH----------
Q 033640 20 ILSEA--TSTVANIIGKPEAYVMIVLKG---SVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAI---------- 84 (114)
Q Consensus 20 ~~~~l--~~~~a~~~~kp~~~i~v~~~~---~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~---------- 84 (114)
|..++ -+.+++-+.--.+++.|.+++ ...+.+++.. .++ ....+-+++-+.++.+.+.
T Consensus 117 F~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~-----~~i--~qh~sledR~~aA~~l~~~~~~~pi~vD~ 189 (237)
T PF00837_consen 117 FMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNP-----YEI--PQHRSLEDRLRAAKLLKEEFPQCPIVVDT 189 (237)
T ss_pred HHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCc-----eee--cCCCCHHHHHHHHHHHHhhCCCCCEEEEc
Confidence 44444 344666666567899998853 3456666443 222 3457888888888877654
Q ss_pred ----HHhhcCCCCCcEEEE
Q 033640 85 ----LEKKLSVPKSRFFIK 99 (114)
Q Consensus 85 ----l~~~Lgi~~~ri~I~ 99 (114)
.++..|.-|||+||.
T Consensus 190 mdN~~~~~YgA~PeRlyIi 208 (237)
T PF00837_consen 190 MDNNFNKAYGALPERLYII 208 (237)
T ss_pred cCCHHHHHhCCCcceEEEE
Confidence 567778889999986
No 264
>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=26.16 E-value=2.2e+02 Score=20.09 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=26.2
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCC
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAS 106 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~ 106 (114)
+++...++-+-..-+.+..+|+.+++++.++|++-.
T Consensus 99 p~qymN~SgesV~kva~~y~i~~~~ivvIhDEl~l~ 134 (224)
T KOG2255|consen 99 PQQYMNFSGESVGKVAALYKIPLRHIVVIHDELELP 134 (224)
T ss_pred cHhhhccccchhhhhHHhhcchheeEEEEeccccCc
Confidence 445555555555566677899999999999998643
No 265
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=25.76 E-value=1.5e+02 Score=17.27 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=25.0
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..+.+...+.+-.+ +.+.++...|+++++..+.+.+-.
T Consensus 14 ~~ekr~~~~~Tv~~-------lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 14 SFEKKYSRGLTIAE-------LKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred eeeEecCCCCcHHH-------HHHHHHHHHCCCccceEEEEEcCC
Confidence 34444444444433 566677778999999999876655
No 266
>cd06926 RNAP_II_RPB11 RPB11 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB11 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association.
Probab=25.70 E-value=1.5e+02 Score=17.81 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=16.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVAN 30 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~ 30 (114)
|.++|+|..+.++ .+.+.+.+.+++.+
T Consensus 59 ~~l~i~t~~~~~p--~~al~~a~~~l~~~ 85 (93)
T cd06926 59 IELRIQTDGSITP--KEALKNAITDLISE 85 (93)
T ss_pred eEEEEEeCCCCCH--HHHHHHHHHHHHHH
Confidence 5688888765443 35566555555443
No 267
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=25.61 E-value=84 Score=17.85 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f 100 (114)
.+-+.+++..|||++|.-+.+
T Consensus 24 ~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 24 DLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred HHHHHHHHHHCCCHHHEEEEe
Confidence 466777888899999999987
No 268
>PTZ00487 ceramidase; Provisional
Probab=25.54 E-value=2.4e+02 Score=23.69 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred eee-cCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC---CCCcEEEEEE
Q 033640 49 MSF-GGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV---PKSRFFIKFY 101 (114)
Q Consensus 49 m~~-gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi---~~~ri~I~f~ 101 (114)
+.+ .......+||.+...+ ++.+...++-+.| ++.+|| +.++|.|+-+
T Consensus 80 fVl~d~~~~rvv~Vs~Dl~~-i~~~v~~~V~~~L----~~~~Gi~~y~~~NVllsAT 131 (715)
T PTZ00487 80 FVFADSPGNRAVYVSTDSCM-IFQEVKIGVVPKL----QEIFGPDLYTLDNVLLSGT 131 (715)
T ss_pred EEEEeCCCCEEEEEEEcccC-CCHHHHHHHHHHH----HHHhCcCcCChhhEEEEee
No 269
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=25.51 E-value=1.1e+02 Score=21.08 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=28.8
Q ss_pred CeeEEEEEeee--CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 57 PAAYGELVSIG--GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 57 p~~~v~l~~~~--~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
-+.-|++...+ .++.+|.+.+.+ |+..|.+..++++++|.=. .|++
T Consensus 113 ~SIGIEl~G~~~~~~t~aQ~~aL~~-L~~~L~~~y~i~~~~IvGH-~dia 160 (185)
T PRK11789 113 FSIGIELEGTDTLPFTDAQYQALAA-LTRALRAAYPIIAERITGH-SDIA 160 (185)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHH-HHHHHHHHcCCCHHhEEeh-hhcC
Confidence 34555554332 367888877775 6666778999987666433 3443
No 270
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=25.46 E-value=2.1e+02 Score=21.68 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHH---hC--CCccEEEEEEeCCceeeec--------CCCCCeeEEEEEeeeCCChHHh
Q 033640 17 TSSILSEATSTVANI---IG--KPEAYVMIVLKGSVPMSFG--------GTEDPAAYGELVSIGGLNPDVN 74 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~---~~--kp~~~i~v~~~~~~~m~~g--------g~~~p~~~v~l~~~~~~~~~~~ 74 (114)
.+.+.++|....... -. .++.|+.|.-+....-..| |..+|.....+...-..|++.+
T Consensus 31 ~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~ 101 (336)
T TIGR03245 31 RAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELK 101 (336)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccC
Confidence 566766665554443 12 3455888877655555555 8889988888766555555443
No 271
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=25.46 E-value=1.9e+02 Score=21.90 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhC----CCccEEEEEEeCCceeeec--------CCCCCeeEEEEEeeeCCChHHh
Q 033640 17 TSSILSEATSTVANIIG----KPEAYVMIVLKGSVPMSFG--------GTEDPAAYGELVSIGGLNPDVN 74 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~----kp~~~i~v~~~~~~~m~~g--------g~~~p~~~v~l~~~~~~~~~~~ 74 (114)
.+.+.++|.......-+ .++.|+.|.-+....-..| |..+|.....+...-..|++.+
T Consensus 31 ~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~ 100 (336)
T TIGR03244 31 EDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELG 100 (336)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccC
Confidence 56777777666655433 2355888877655555555 8889988887765554554443
No 272
>PTZ00044 ubiquitin; Provisional
Probab=25.45 E-value=88 Score=17.38 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+.+-+.+++..|+|+++..+.|..
T Consensus 23 v~~lK~~i~~~~gi~~~~q~L~~~g 47 (76)
T PTZ00044 23 VQQVKMALQEKEGIDVKQIRLIYSG 47 (76)
T ss_pred HHHHHHHHHHHHCCCHHHeEEEECC
Confidence 4557777888889999988888743
No 273
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=25.35 E-value=2.3e+02 Score=19.51 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeC-CceeeecCCCCCeeEEEEEee-eCC--ChHHhHHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKG-SVPMSFGGTEDPAAYGELVSI-GGL--NPDVNKKLSAAI 81 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~-~~~m~~gg~~~p~~~v~l~~~-~~~--~~~~~~~~~~~i 81 (114)
.+.+..++.+++.+.++ ...++|.++. .-+|..-|..++.+...-... |.+ ++..+.++...+
T Consensus 118 QERLT~qIa~~l~~~l~--p~gVaV~ieA~H~Cm~mRGv~~~~s~t~T~~~~G~F~~d~~~r~ef~~~i 184 (188)
T PLN03044 118 QERLTRQIADAIVESVE--PLGVMVVVEAAHFCMVMRGVEKHGASTTTSAVRGCFASNPKLRAEFFRII 184 (188)
T ss_pred HHHHHHHHHHHHHHhhC--CCceEEEEEEEEeeehhhCccCCCCeEEEEEeeeEeCCCHHHHHHHHHHH
Confidence 35566666666666666 3455555542 245555577766554444444 434 455555555444
No 274
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=25.31 E-value=2.5e+02 Score=19.78 Aligned_cols=78 Identities=8% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc-CCCCCcE
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRF 96 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L-gi~~~ri 96 (114)
++..+++.+.+.+..+. . .+++ .++..-|...-.+.+++..-+..+.++-.+..+++.+.+++++ ++. ++
T Consensus 204 ~~~~~~i~~~i~~~~~v---~---~v~~-~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~--~v 274 (284)
T PF01545_consen 204 PELVEKIRRIIESVPGV---I---EVHD-LRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIY--DV 274 (284)
T ss_dssp HHHHHHHHHHHHHTSS----S---EEEE-EEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCE--EE
T ss_pred ccchhHHHHhhccCCce---E---eccc-eEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcE--EE
Confidence 34445666666552221 1 2222 2333334445555566665566788888889999999999987 554 37
Q ss_pred EEEEEeCC
Q 033640 97 FIKFYDTK 104 (114)
Q Consensus 97 ~I~f~~~~ 104 (114)
.|.+++.+
T Consensus 275 ~I~~~p~~ 282 (284)
T PF01545_consen 275 TIHIEPDE 282 (284)
T ss_dssp EEEEEECG
T ss_pred EEEEEecC
Confidence 77777654
No 275
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=25.22 E-value=2.2e+02 Score=20.45 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=26.1
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCC---CccEEEE
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGK---PEAYVMI 41 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~k---p~~~i~v 41 (114)
|+|.|..|...+..-+.+-+-++.+++++...+ ..+.+.+
T Consensus 133 PvV~isin~~~~p~~~~~~~~~lG~al~~~i~~~~~~d~rV~i 175 (268)
T cd07367 133 PVVPLIVNINTDPAPSPRRCWALGKVLAQYVEKRRPAGERVAV 175 (268)
T ss_pred CEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 899999998875432334455778888887665 3445554
No 276
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=25.10 E-value=91 Score=17.38 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 24 ~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 24 NFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred HHHHHHHHHhCCCHHHeEEEEC
Confidence 4567777888999998888774
No 277
>COG5609 Uncharacterized conserved protein [Function unknown]
Probab=24.95 E-value=1.3e+02 Score=19.37 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=27.5
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 72 DVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 72 ~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
..-.+++++++.+-.+.||=.|.+|...|.+
T Consensus 7 ~~e~EiS~~i~~~~ke~lGrgp~sI~t~f~~ 37 (124)
T COG5609 7 QKESEISKAITSLEKEYLGRGPVSIKTDFLD 37 (124)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceeEeehhh
Confidence 4457899999999999999999999998876
No 278
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=24.88 E-value=69 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 77 LSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
....++....+.|||+.++|.|..-|-
T Consensus 493 ~~T~~aQiaAe~LGip~e~V~v~~~DT 519 (768)
T TIGR03196 493 FLAAAEQIAMEELGCAAEDISIAIADT 519 (768)
T ss_pred HHHHHHHHHHHHhCCCHHHEEEecCCC
Confidence 344577788889999999999998765
No 279
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=24.87 E-value=93 Score=17.56 Aligned_cols=23 Identities=4% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEe
Q 033640 80 AISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+-+.+++..|+|+++..+.|..
T Consensus 22 ~lK~~i~~~~gip~~~q~L~~~G 44 (76)
T cd01800 22 VLKVKIHEETGMPAGKQKLQYEG 44 (76)
T ss_pred HHHHHHHHHHCCCHHHEEEEECC
Confidence 35566777789999999888754
No 280
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=24.84 E-value=2.3e+02 Score=22.21 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEe
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLK 44 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~ 44 (114)
+++.+.++.+.++..+|.|+....-.+.
T Consensus 200 ~~~~~~~iy~il~~~lG~pP~~F~~~y~ 227 (437)
T cd00585 200 KEEMLKEVYRILAIALGEPPEKFDWEYR 227 (437)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 5788899999999999999987776654
No 281
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=24.82 E-value=1.8e+02 Score=21.49 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=27.8
Q ss_pred EEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 61 v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
+.+-.+..-++++..+-.+.|.++|+++||++
T Consensus 37 l~~gi~p~e~~~~~~~~~~pl~~~L~~~lG~~ 68 (299)
T COG3221 37 LRVGIVPTENPTNLIPAWAPLADYLEKELGIP 68 (299)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHHHhCCc
Confidence 56666677788888999999999999999999
No 282
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=24.65 E-value=1.1e+02 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhhcCC--CC--CcEEEEEEeCC
Q 033640 74 NKKLSAAISAILEKKLSV--PK--SRFFIKFYDTK 104 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi--~~--~ri~I~f~~~~ 104 (114)
++-+.+++++.|+++|+- .+ ++|.|.|..++
T Consensus 202 ~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHs 236 (395)
T KOG1321|consen 202 REGLIKAFAENIEKELQTFPEPVRDDVVILFSAHS 236 (395)
T ss_pred cchHHHHHHHHHHHHHHhcCCcccccEEEEEecCC
Confidence 456778888888888862 34 88999998765
No 283
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=24.50 E-value=1.1e+02 Score=17.99 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=21.2
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGK 34 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~k 34 (114)
.|.+.+......+..+...+.+.+.+...+..|.
T Consensus 57 ~P~i~~~~~~~l~~~~~~~l~~~l~~~~~e~~g~ 90 (107)
T smart00591 57 APPISLLNSEGLSDEQLAELLKKLEEIAEENLGE 90 (107)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3667776655555555566667777766665544
No 284
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=24.47 E-value=1.2e+02 Score=16.83 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCC--CCCcEEEEEE
Q 033640 78 SAAISAILEKKLSV--PKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi--~~~ri~I~f~ 101 (114)
.+.+-+.+++..|+ ++++..+.|.
T Consensus 23 V~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 23 VAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred HHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 34455667777898 9999988874
No 285
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=24.46 E-value=3e+02 Score=20.44 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhC-CCcc-EEEEEEe--CCceeeecCCCCCeeEEEEEeeeCCChH-HhH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIG-KPEA-YVMIVLK--GSVPMSFGGTEDPAAYGELVSIGGLNPD-VNK 75 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~-kp~~-~i~v~~~--~~~~m~~gg~~~p~~~v~l~~~~~~~~~-~~~ 75 (114)
+|+|+=.++....+ +++-..-+...+.+.++ -|+. .+|.-+. .-..++-.--++|-++-.|-..||.+.+ .|+
T Consensus 170 VPIVEPEVli~~~~--k~~~e~~l~~~i~~~l~~l~~~~~vmlkltlp~~~~~y~~l~~hp~v~rvvalsggysr~~a~~ 247 (292)
T cd00949 170 VPIIEPEVDIHSAD--KAKCEAILKAEILKHLDKLPEGQQVMLKLTLPTEANFYSELIEHPKVLRVVALSGGYSREEANE 247 (292)
T ss_pred CceECceECCCCcc--HHHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCCcChhHHHhcCCCeEEEEEcCCCcCHHHHHH
Confidence 57776666655432 45555555566666665 3433 5776554 3345666666799876666677888854 455
Q ss_pred HHH
Q 033640 76 KLS 78 (114)
Q Consensus 76 ~~~ 78 (114)
+++
T Consensus 248 ~l~ 250 (292)
T cd00949 248 LLA 250 (292)
T ss_pred HHh
Confidence 544
No 286
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=24.40 E-value=2.6e+02 Score=19.71 Aligned_cols=53 Identities=8% Similarity=0.172 Sum_probs=36.0
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE 55 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~ 55 (114)
+..|+.|.+....-..++..++.+++.++-..|.-.+.|.--.+..++-|+.-
T Consensus 11 v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl 63 (251)
T TIGR03189 11 LLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASV 63 (251)
T ss_pred EEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcCh
Confidence 56778887643444567889999999987766666665554455566666543
No 287
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=24.20 E-value=1.2e+02 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCCCCCc
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTKASHF 108 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~ 108 (114)
..+.+...+.||+|.++|.|..-|-...-|
T Consensus 692 T~~~QiaAe~LGip~d~V~v~~~DT~~~p~ 721 (956)
T PRK09800 692 TVVTKLAAEVLHCPPQDVHVISGDTDHALF 721 (956)
T ss_pred HHHHHHHHHHHCCCceeEEEEeCCCCCCCC
Confidence 346677778999999999999877643333
No 288
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=24.05 E-value=93 Score=17.36 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=17.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+++++..+.|.
T Consensus 24 ~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 24 STLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred HHHHHHHHHHHCCCHHHeEEEEC
Confidence 33556667777999999888765
No 289
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=24.03 E-value=2.8e+02 Score=19.97 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=35.1
Q ss_pred CccEEEEEE-e-CCceeeecCC------CCCeeEEEEEeeeC---CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 35 PEAYVMIVL-K-GSVPMSFGGT------EDPAAYGELVSIGG---LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 35 p~~~i~v~~-~-~~~~m~~gg~------~~p~~~v~l~~~~~---~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+++++...+ + ++..|.|+.+ ..--.++-.-|.|. .+..+++++-++ ...||||.+++.+.-.+
T Consensus 36 ~~sriLLviAhpdDE~mFFsPtI~~L~~~~~~v~iLClSnGN~dg~G~iR~kEL~ra-----~~~lgi~~s~v~~l~~~ 109 (247)
T KOG3332|consen 36 AESRILLVIAHPDDESMFFSPTILYLTSGACNVHILCLSNGNADGLGKIREKELHRA-----CAVLGIPLSNVVVLDTP 109 (247)
T ss_pred ccceEEEEEeccCccccchhhHHHHHhcCCccEEEEEecCCCccccchHHHHHHHHH-----HHHHCCchhheEEecCC
Confidence 344444444 3 3467999932 11123444445553 456666666553 24679998888775433
No 290
>PF14516 AAA_35: AAA-like domain
Probab=23.82 E-value=1.3e+02 Score=22.31 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCccEEEEEEeC--C-ceeeec------CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 25 TSTVANIIGKPEAYVMIVLKG--S-VPMSFG------GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 25 ~~~~a~~~~kp~~~i~v~~~~--~-~~m~~g------g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
-+.+-+.+.+|-+++.|.--. | ..+... ...-.++++.+...+.-....-.++.+.+|..+.+.|+++.
T Consensus 20 e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~ 97 (331)
T PF14516_consen 20 EQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDE 97 (331)
T ss_pred HHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCCh
Confidence 344445556677777664321 1 011100 23467788888887764444455688888888888888764
No 291
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=23.78 E-value=2.6e+02 Score=23.23 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=35.6
Q ss_pred CCeeEEEEEeee-CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 56 DPAAYGELVSIG-GLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 56 ~p~~~v~l~~~~-~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++.+.+++.+.+ .++++.-++.-..|.+.+.+.++++++.||..
T Consensus 436 ~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i~~k 480 (702)
T PRK11783 436 GDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKVVLK 480 (702)
T ss_pred CCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 566777777766 36677777888889999999999999999988
No 292
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=23.52 E-value=1.9e+02 Score=17.69 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=23.4
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
++++.....-+.+.+++ +.+|++.+++...++
T Consensus 111 R~~~l~~~~~~~f~~~~-~~~gi~~~~i~~~~~ 142 (144)
T PF00061_consen 111 RTPELSPEALEKFKKFA-KSLGIDEENIVRTFQ 142 (144)
T ss_dssp SSSEEEHHHHHHHHHHH-HHTTETGGCEEEEEE
T ss_pred CCCcCCHHHHHHHHHHH-HhCCCCHHeEEECCC
Confidence 66666666666666666 555999999987765
No 293
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=23.47 E-value=1.3e+02 Score=23.35 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=23.4
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.||.+ .+.+.|-+...+.||+.++++|+.+.
T Consensus 169 kSPQq--~~g~~iK~~~~~~~~~~~e~~~~Vsi 199 (411)
T COG4624 169 KSPQQ--ALGSLIKTYYAEKLGIAPEDVYHVSI 199 (411)
T ss_pred CCHHH--HHHHHHHHHhhhhcCCCccceeEEEE
Confidence 34544 46667777788999999999998764
No 294
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=23.43 E-value=1.6e+02 Score=23.57 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=29.5
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+.+..+-++++.++++.+.+..|...+ +|++++|+++
T Consensus 154 ~~s~nEi~r~~~~f~~el~~~iGp~~D--------vPapdig~G~ 190 (514)
T KOG2250|consen 154 GKSDNEIERITRRFTDELIDIIGPDTD--------VPAPDIGTGP 190 (514)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCC--------CCccccccCc
Confidence 356778888999999988887787765 8888888775
No 295
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=23.42 E-value=3.3e+02 Score=20.53 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=26.4
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..++.+.-.+..+.+.+.+. .+|+..-||-|.
T Consensus 176 ~~it~e~i~~~i~~~~~~l~-~~gi~~PrIaV~ 207 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLK-RVGYVKPRIAVA 207 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHH-HhCCCCCCEEEE
Confidence 34788888888999999998 899988787654
No 296
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=23.41 E-value=1.1e+02 Score=17.05 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 22 ~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 22 SDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred HHHHHHHHhhhCCCHHHEEEEEC
Confidence 34556777888999999988875
No 297
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=23.36 E-value=93 Score=18.41 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHh-CCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANII-GKP 35 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~-~kp 35 (114)
.|.+.++.+......+...+.+.+.+.+.+.. |-+
T Consensus 65 ~P~i~l~~~~~~~~~~~~~l~~~l~~~~~~~~~G~~ 100 (113)
T PF05773_consen 65 PPKISLESPKNSRNEQIEKLNKELEQIAEENRQGEP 100 (113)
T ss_dssp --EEEEEEESSSHCHHHHHHHHHHHHHHHHSTTTS-
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 37888888887764557788888888887776 543
No 298
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=23.33 E-value=3.7e+02 Score=21.16 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=32.1
Q ss_pred eeeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHHHhhcC
Q 033640 48 PMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 48 ~m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
-...-+.+-|++++|+--+-. .+++-.++++++|++-+.+.+.
T Consensus 368 f~VLr~~~~PsVLVE~GFISNp~De~~L~s~~~q~kiA~aIa~GI~~Yf~ 417 (445)
T PRK10431 368 LGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQIAEAIYKGLRNYFL 417 (445)
T ss_pred eEEEccCCCCEEEEEecccCCHHHHHHhCCHHHHHHHHHHHHHHHHHHHh
Confidence 344446778999999976532 2577788999999998888775
No 299
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=23.18 E-value=3.7e+02 Score=21.10 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
+++.++++.+.++..||+|+....-.+.+... +.+..+.+||.. |.++.+|+.+++-
T Consensus 201 k~~~l~~iy~il~~~lG~PP~~F~~ey~dkd~-------------~~~~~~~~TP~e----------F~~kyv~~~~ddy 257 (438)
T PF03051_consen 201 KEEMLAEIYRILAIYLGEPPEKFTWEYRDKDK-------------KYHRGKNYTPLE----------FYKKYVGFDLDDY 257 (438)
T ss_dssp HHHHHHHHHHHHHHHH---SSSEEEEEE-TTS--------------EEEEEEE-HHH----------HHHHCTTS-GGGE
T ss_pred HHHHHHHHHHHHHHHcCCCChheeEEEecccc-------------ccccccccCchh----------HHHHHhCCCCcce
Q ss_pred EEEEEeCCCCC
Q 033640 97 FIKFYDTKASH 107 (114)
Q Consensus 97 ~I~f~~~~~~~ 107 (114)
.-..++...++
T Consensus 258 VsLin~P~~~~ 268 (438)
T PF03051_consen 258 VSLINDPRSHH 268 (438)
T ss_dssp EEEE--T-TTS
T ss_pred EEEeeCCCccC
No 300
>PRK07117 acyl carrier protein; Validated
Probab=23.15 E-value=75 Score=18.48 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhhc-CCCCCcE
Q 033640 74 NKKLSAAISAILEKKL-SVPKSRF 96 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~L-gi~~~ri 96 (114)
+++....+.+.+.+.+ +++++++
T Consensus 3 ~~ei~~~v~~ii~e~~p~i~~~~I 26 (79)
T PRK07117 3 KQRIFDILVRHIREVLPDLDQHQF 26 (79)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHC
Confidence 3557778889999999 6888766
No 301
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=23.11 E-value=2.8e+02 Score=19.57 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=35.0
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE 55 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~ 55 (114)
+..|+.|.+.-..-..++..++.+++.++-..|.-.+.|.--.+..++-|+.-
T Consensus 14 v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl 66 (257)
T PRK06495 14 VAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADL 66 (257)
T ss_pred EEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCH
Confidence 56677777633333567888999999888766665666554455566666543
No 302
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=23.05 E-value=2.1e+02 Score=21.57 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=26.7
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcC
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
.-+|..+|.-.+-.+.++++-|++++.+.++
T Consensus 242 ~geIYNIgtd~e~~~~~l~k~i~eli~~~~~ 272 (331)
T KOG0747|consen 242 LGEIYNIGTDDEMRVIDLAKDICELFEKRLP 272 (331)
T ss_pred ccceeeccCcchhhHHHHHHHHHHHHHHhcc
Confidence 4577778877788899999999999999887
No 303
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=23.04 E-value=1e+02 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..+.+++.+.+.+++|++++||+..
T Consensus 207 ~~mv~~v~~~l~~~~g~~~~~i~~~ 231 (235)
T cd06193 207 AGAVRALRRHLREERGVPRAQVYAS 231 (235)
T ss_pred HHHHHHHHHHHHHccCCCHHHEEEE
Confidence 5677888888988899999998753
No 304
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=22.94 E-value=1.6e+02 Score=16.59 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCCC
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTKASH 107 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~ 107 (114)
...+.+.+.+.++.+...+.+.|.|-..+.
T Consensus 24 ~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~ 53 (84)
T PF00564_consen 24 FDDLRSKIREKFGLLDEDFQLKYKDEDGDL 53 (84)
T ss_dssp HHHHHHHHHHHHTTSTSSEEEEEEETTSSE
T ss_pred HHHHHHHHHHHhCCCCccEEEEeeCCCCCE
Confidence 344778888888999999999999977643
No 305
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=22.94 E-value=1.1e+02 Score=21.75 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..+.+++.+.+ +++|++.+||+..+...=
T Consensus 201 ~~mv~~~~~~L-~~~Gv~~~~i~~~~~~~m 229 (263)
T PRK08221 201 PIMMKFTVLEF-LKRGIKEENIWVSYERKM 229 (263)
T ss_pred HHHHHHHHHHH-HHcCCCHHHEEEEeccee
Confidence 55677777888 567999999999987764
No 306
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=22.92 E-value=76 Score=23.77 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 76 KLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..++.+...+. ++||+++||++-
T Consensus 187 n~ak~L~~~l~-~~Gi~~edIviD 209 (319)
T PRK04452 187 NLAKQLNILLT-ELGVPRERIVMD 209 (319)
T ss_pred HHHHHHHHHHH-HcCCCHHHEEEe
Confidence 35666777775 779999999874
No 307
>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=22.82 E-value=2.9e+02 Score=19.63 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCcc-EEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHH-HHHHHHHhhcCCCCCcEEEE
Q 033640 24 ATSTVANIIGKPEA-YVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSA-AISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 24 l~~~~a~~~~kp~~-~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~-~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++.++..+.||.-. ...+.-..-.++...+ -.|+..|++ +|-++++ ++|.++ ||-||..||=+
T Consensus 176 lsRAIGRiaGk~GkTkfaIEn~trtrIVlad-------~kIHiLG~~---~niriAR~avcsLI---lGsppgkVy~~ 240 (252)
T KOG3273|consen 176 LSRAIGRIAGKGGKTKFAIENVTRTRIVLAD-------SKIHILGAF---QNIRIARDAVCSLI---LGSPPGKVYGN 240 (252)
T ss_pred HHHHHHHhhcCCCcceeeeeccceeEEEecC-------ceEEEeecc---hhhHHHHHhhHhhh---ccCCchhHHHH
Confidence 45566666665444 2333322334444443 245666764 4445555 566665 78888887743
No 308
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=22.75 E-value=1.4e+02 Score=17.78 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=16.5
Q ss_pred EEEEEEeCCceeeecCCCCCeeEEEE
Q 033640 38 YVMIVLKGSVPMSFGGTEDPAAYGEL 63 (114)
Q Consensus 38 ~i~v~~~~~~~m~~gg~~~p~~~v~l 63 (114)
.+.|.+..+..+. +|..+|.+-+.+
T Consensus 5 ~l~V~v~~a~~L~-~~~~dpyv~v~~ 29 (111)
T cd04011 5 QVRVRVIEARQLV-GGNIDPVVKVEV 29 (111)
T ss_pred EEEEEEEEcccCC-CCCCCCEEEEEE
Confidence 4677777766666 777888544444
No 309
>PRK10456 arginine succinyltransferase; Provisional
Probab=22.64 E-value=2.2e+02 Score=21.69 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHhC----CCccEEEEEEeCCceeeec--------CCCCCeeEEEEEeeeCCChHHh
Q 033640 17 TSSILSEATSTVANIIG----KPEAYVMIVLKGSVPMSFG--------GTEDPAAYGELVSIGGLNPDVN 74 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~----kp~~~i~v~~~~~~~m~~g--------g~~~p~~~v~l~~~~~~~~~~~ 74 (114)
.+.+.++|.......-+ .++.|+.|.-+....-..| |..+|.....+...-..|++.+
T Consensus 33 ~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~ 102 (344)
T PRK10456 33 EATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELN 102 (344)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccC
Confidence 56777777666655433 3345888877655555555 8889988887765554554443
No 310
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=22.55 E-value=1.1e+02 Score=16.84 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+-+.+++..|+++++..+.|.
T Consensus 22 V~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 22 VKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 334556677777999999988764
No 311
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=22.50 E-value=1.7e+02 Score=18.18 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=24.8
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
+..-++.+.+.++.++|. ..||+...+.+.=
T Consensus 16 f~~~qC~~cA~Al~~~L~-~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 16 FKIFQCVECASALKQFLK-QAGIPGKIIRLYT 46 (100)
T ss_pred cCceehHHHHHHHHHHHH-HCCCCceEEEEEe
Confidence 456678999999999994 5599998887754
No 312
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=1.5e+02 Score=19.28 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHhCCCccEEEEE--EeCCceeeecCCCCCeeEEEEE-------------------eeeCCChHHhHHHHHHHHHHHHhh
Q 033640 30 NIIGKPEAYVMIV--LKGSVPMSFGGTEDPAAYGELV-------------------SIGGLNPDVNKKLSAAISAILEKK 88 (114)
Q Consensus 30 ~~~~kp~~~i~v~--~~~~~~m~~gg~~~p~~~v~l~-------------------~~~~~~~~~~~~~~~~i~~~l~~~ 88 (114)
.+++-|.-.--+. ..-..-+.+||..+|-.|+.=- .-..++++++++|...+.++..+.
T Consensus 38 ti~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwterkiaga~elvea~~~l~pdevqqf~tdlt~ltkds 117 (160)
T COG4306 38 TITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTERKIAGAVELVEAGENLNPDEVQQFRTDLTDLTKDS 117 (160)
T ss_pred HHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHHHHhHHHHHHHccccCCHHHHHHHHhhHHHHhhcC
Confidence 3555555432221 1112346677777765665421 112367888899988888887654
No 313
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.43 E-value=78 Score=18.47 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=17.0
Q ss_pred CChHHhHHHHHHHHHH------HHhhcCCCCCc
Q 033640 69 LNPDVNKKLSAAISAI------LEKKLSVPKSR 95 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~------l~~~Lgi~~~r 95 (114)
+|.++..++..++++- .-.+||||++.
T Consensus 13 vsd~qi~elFq~lT~NPl~AMa~i~qLGip~eK 45 (82)
T PF11212_consen 13 VSDEQINELFQALTQNPLAAMATIQQLGIPQEK 45 (82)
T ss_pred CCHHHHHHHHHHHhhCHHHHHHHHHHcCCCHHH
Confidence 5666666666665542 44678888764
No 314
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=22.26 E-value=1.3e+02 Score=22.93 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCccEEEEEEeCCceeeecCC-------------CCCeeEEEEEeeeC-CChHHhHHHHHHHHHHHHhhc
Q 033640 24 ATSTVANIIGKPEAYVMIVLKGSVPMSFGGT-------------EDPAAYGELVSIGG-LNPDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~-------------~~p~~~v~l~~~~~-~~~~~~~~~~~~i~~~l~~~L 89 (114)
-...+...|+. +..|.-++-.+..++-... .+| ++...|. ++..+.-..+..+|+.++++|
T Consensus 36 p~~~l~~~l~~-~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~p----D~viaGPaFnagrYG~acg~v~~aV~e~~ 110 (349)
T PF07355_consen 36 PGLMLEKALKD-DAEIVATIICGDNYFNENKEEALKKILEMVKKLKP----DVVIAGPAFNAGRYGVACGEVAKAVQEKL 110 (349)
T ss_pred hHHHHHHHhcC-CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCC----CEEEEcCCcCCchHHHHHHHHHHHHHHhh
Confidence 35667777775 5677777776544433311 123 3334454 888999999999999999999
Q ss_pred CCCC
Q 033640 90 SVPK 93 (114)
Q Consensus 90 gi~~ 93 (114)
+||.
T Consensus 111 ~IP~ 114 (349)
T PF07355_consen 111 GIPV 114 (349)
T ss_pred CCCE
Confidence 9994
No 315
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=22.23 E-value=2.2e+02 Score=18.16 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCC-CccEEEEEEeCC--ceeeecCCC-CCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 18 SSILSEATSTVANIIGK-PEAYVMIVLKGS--VPMSFGGTE-DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~k-p~~~i~v~~~~~--~~m~~gg~~-~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
+.+...+-++..+.++. |..+..+.+-.. ..+... ++ |- +++--.....-..+.-+++++.+.+.| ..+|+++
T Consensus 29 d~l~~r~~~la~~~~~~pp~~~a~lalGS~GR~E~~~~-sDqD~-alv~~d~~~~~~~~~f~~~a~~~~~~L-~~~G~~~ 105 (138)
T PF03445_consen 29 DALIRRLIELAEAEMGPPPVPFAWLALGSYGRREQTLY-SDQDN-ALVFEDEESEEDRAYFEAFAERLVDAL-DECGFPP 105 (138)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEEECcccccCCCcC-ccccc-eeeecCccchhHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 45556666666677765 444555555322 233333 34 44 333222222233444555666666666 5669998
Q ss_pred CcEEEEE
Q 033640 94 SRFFIKF 100 (114)
Q Consensus 94 ~ri~I~f 100 (114)
....|.-
T Consensus 106 C~g~vma 112 (138)
T PF03445_consen 106 CPGGVMA 112 (138)
T ss_pred CCCCcCc
Confidence 7655543
No 316
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=22.19 E-value=2.9e+02 Score=19.43 Aligned_cols=52 Identities=8% Similarity=0.040 Sum_probs=34.9
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~ 54 (114)
+..|+.|.+....-..++..++.+++.++-..|.-.+.|.--.+..++-|+.
T Consensus 12 v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~D 63 (249)
T PRK07938 12 IAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVD 63 (249)
T ss_pred EEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcC
Confidence 5667888764344456788888888888776666566555555566777754
No 317
>PF13989 YejG: YejG-like protein
Probab=22.19 E-value=2.1e+02 Score=17.85 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred cChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC
Q 033640 15 VDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG 68 (114)
Q Consensus 15 ~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~ 68 (114)
+..-+.+..+++.++++ ..+.-.+.++....+++...++-++.+.++..|.
T Consensus 49 ~~aw~im~~L~~sL~ei---qv~~~vvE~eGepCLFv~~~DEsa~~CrLKn~GV 99 (106)
T PF13989_consen 49 ESAWQIMQQLSQSLAEI---QVDCAVVEWEGEPCLFVHREDESAAMCRLKNFGV 99 (106)
T ss_pred hHHHHHHHHHHHHHHHh---cccceEEEecCCceEEEecccchhhheeeccCce
Confidence 33457788888888875 4556677888767788887888889999988774
No 318
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.02 E-value=98 Score=21.67 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.8
Q ss_pred eeCCChHHhHHHHHHHHHHHHhhc
Q 033640 66 IGGLNPDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 66 ~~~~~~~~~~~~~~~i~~~l~~~L 89 (114)
....||++.++|.+++.+++.+..
T Consensus 84 ~k~aspeQ~~~F~~aF~~yl~q~Y 107 (202)
T COG2854 84 YKTASPEQRQAFFKAFRTYLEQTY 107 (202)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999987754
No 319
>PRK00341 hypothetical protein; Provisional
Probab=21.97 E-value=1.7e+02 Score=17.58 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=22.4
Q ss_pred CeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 57 PAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 57 p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
||.-..++.+|. ....+..++.+.++++.....+.+
T Consensus 14 Pc~~~~~KViG~----~~~~~~~~V~~iv~~~~~~~~~~~ 49 (91)
T PRK00341 14 PCEDYPIKVIGD----TGVGFKDLVIEILQKHADVDLSTL 49 (91)
T ss_pred CCCCccEEEEEc----CchhHHHHHHHHHHHhCCCcccce
Confidence 753478899994 334455666677766665554443
No 320
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=21.78 E-value=1.2e+02 Score=19.01 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=15.4
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
...-.+....+.+.+.++||++|.
T Consensus 112 ~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 112 RAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcC
Confidence 344466777889999999999875
No 321
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=21.66 E-value=1.1e+02 Score=26.30 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
|++-.+---+++ +.||+|++||.- ...-|..+|
T Consensus 159 K~EaI~~a~e~l-~~lgi~~~~i~~-----~enfW~~GG 191 (902)
T TIGR03683 159 KDETVEYCFEFL-EELGIDPEEITY-----KESPWEGGG 191 (902)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHeee-----cCCccCCCC
Confidence 445555567788 889999999844 234565555
No 322
>PF07579 DUF1548: Domain of Unknown Function (DUF1548); InterPro: IPR013044 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR011436 from INTERPRO.
Probab=21.55 E-value=1.4e+02 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.8
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
-+|+.+..+..-+++.+ +.+|+|..
T Consensus 79 sspe~~~~i~~yll~~l-~~l~lPe~ 103 (135)
T PF07579_consen 79 SSPEQKAAIRNYLLDDL-NALNLPET 103 (135)
T ss_pred CCHHHHHHHHHHHHHHH-HHcCCChH
Confidence 57899999999999999 88999864
No 323
>PRK03557 zinc transporter ZitB; Provisional
Probab=21.47 E-value=3.4e+02 Score=19.91 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC
Q 033640 4 LNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS 46 (114)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~ 46 (114)
+.++.-++... +.+++.+++.+.+.+.++ ..+++|++++.
T Consensus 253 v~~hv~v~~~~-~~~~i~~~i~~~l~~~~~--i~~vtIh~e~~ 292 (312)
T PRK03557 253 MTLHVQVIPPH-DHDALLDRIQDYLMHHYQ--IEHATIQMEYQ 292 (312)
T ss_pred EEEEEEECCCC-CHHHHHHHHHHHHHHhCC--CCEEEEEeccC
Confidence 44444443222 356788888888887765 66899999875
No 324
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.46 E-value=1.3e+02 Score=19.49 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.4
Q ss_pred CCChHHhHHHHHHHHHHHHhh
Q 033640 68 GLNPDVNKKLSAAISAILEKK 88 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~ 88 (114)
..|++++.++...|.+++.++
T Consensus 4 ~~T~eer~eLk~rIvElVRe~ 24 (127)
T PF06163_consen 4 VFTPEEREELKARIVELVREH 24 (127)
T ss_pred cCCHHHHHHHHHHHHHHHHHc
Confidence 478999999999999998765
No 325
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=21.45 E-value=1.4e+02 Score=22.39 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=29.4
Q ss_pred EEEeee-CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCC
Q 033640 62 ELVSIG-GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAS 106 (114)
Q Consensus 62 ~l~~~~-~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~ 106 (114)
+++++. ..++++-++.+..+...+- .+|++|++..|.++.--++
T Consensus 45 DlHalt~~~~~~~l~~~~~~~~~~~l-A~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 45 DYHALNAVHDPEQFRSYTREVAATWL-SLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred chhhccCCCCHHHHHHHHHHHHHHHh-heeecccceEEEECCCchH
Confidence 445543 2467777777765555442 6799999999988766443
No 326
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=21.43 E-value=60 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=20.4
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
-|-|++|+--...++ +.||++|+++.+.
T Consensus 317 ~EiNEAFs~v~lA~i-K~LgldP~kVNv~ 344 (396)
T KOG1390|consen 317 WEINEAFSVVVLANI-KKLGLDPSKVNVH 344 (396)
T ss_pred HhhhhhhhHHHHHHH-HHhCCCHhhccCC
Confidence 356777777555555 8999999998764
No 327
>PF02130 UPF0054: Uncharacterized protein family UPF0054; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa. They contain a conserved region with three histidines at the C terminus. The protein family is represented by a single member sequence only in nearly every bacterium. The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions [].; GO: 0046872 metal ion binding; PDB: 1TVI_A 1OZ9_A 1XM5_A 1XAX_A.
Probab=21.32 E-value=1.8e+02 Score=18.83 Aligned_cols=30 Identities=33% Similarity=0.350 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 73 VNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 73 ~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.+++.+.+.+.+.+.++++...+-|.|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~el~i~fv~ 43 (145)
T PF02130_consen 14 RLEKIIRKILEALLKELKVPDFELSIVFVD 43 (145)
T ss_dssp S-HHHHHHHHHHHCHHCCSCCCEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEEC
Confidence 456788889999999999998889888876
No 328
>PF10939 DUF2631: Protein of unknown function (DUF2631) ; InterPro: IPR024341 This entry represents a bacterial protein of unknown function.
Probab=21.29 E-value=46 Score=18.95 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=11.9
Q ss_pred EEEEeCCCCCcccccc
Q 033640 98 IKFYDTKASHFNFLVC 113 (114)
Q Consensus 98 I~f~~~~~~~~g~~g~ 113 (114)
+.-.|.|...|||.|.
T Consensus 12 Vd~~d~PSa~WGWhg~ 27 (65)
T PF10939_consen 12 VDPADVPSAAWGWHGE 27 (65)
T ss_pred CCcccCCCccccccCC
Confidence 3346788899999874
No 329
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=21.26 E-value=2.1e+02 Score=18.81 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcC--C-CCCcEEEEEEeCCC
Q 033640 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS--V-PKSRFFIKFYDTKA 105 (114)
Q Consensus 56 ~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg--i-~~~ri~I~f~~~~~ 105 (114)
+|.-|-++...++......+...++|++.+++.-. + +..+.-|.++|++-
T Consensus 10 dP~~ftD~~~s~~~~~~~~~~~~~~L~~~~~~la~~~Lp~gq~L~v~VtDvDL 62 (141)
T PF11454_consen 10 DPEKFTDIRPSNGSQSRYRERVFAQLTKHFQKLAAKYLPPGQTLEVTVTDVDL 62 (141)
T ss_pred CcccccccccCCCcccccHHHHHHHHHHHHHHHHHhhCCCCCEEEEEEEeccc
Confidence 45566777755555555556677777777755442 3 46788888888853
No 330
>PF01785 Closter_coat: Closterovirus coat protein; InterPro: IPR002679 This family consist of coat proteins from closterovirus, which belong to the Closteroviridae, which have a positive strand ssRNA genome with no DNA stage during replication. The viral coat protein encapsulates and protects the viral genome. Both the large cp1 and smaller cp2 coat protein originate from the same primary transcript []. Members of the Closterovirus include Beet yellows virus (BYV) (Sugar beet yellows virus) and Grapevine leafroll-associated virus 7.; GO: 0044423 virion part
Probab=21.25 E-value=1.3e+02 Score=20.50 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=26.3
Q ss_pred eeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 66 IGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 66 ~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
...++.++.+++...+.+++.+.++++.+.+
T Consensus 10 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~k~~ 40 (188)
T PF01785_consen 10 PDVLSEEDLKKLSEKLKKFLKEKLGVTDKDF 40 (188)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 4458899999999999999999998887654
No 331
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=21.25 E-value=2.9e+02 Score=20.94 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHH----hCCCccEEEEEEeCCceeeec--------CCCCCeeEEEEEeeeCCChHHh
Q 033640 17 TSSILSEATSTVANI----IGKPEAYVMIVLKGSVPMSFG--------GTEDPAAYGELVSIGGLNPDVN 74 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~----~~kp~~~i~v~~~~~~~m~~g--------g~~~p~~~v~l~~~~~~~~~~~ 74 (114)
.+.+.++|....... ..-++.|+.|.-+....-..| |..+|.....+...-..|++.+
T Consensus 31 ~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~ 100 (335)
T TIGR03243 31 RAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELG 100 (335)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccC
Confidence 566666665544433 223455888877655555555 8889988888766555555443
No 332
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=21.23 E-value=2.1e+02 Score=19.45 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred eEEEEEeeeCCCh----HHhHHHHHHHHHHHHhhcCCCCC
Q 033640 59 AYGELVSIGGLNP----DVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 59 ~~v~l~~~~~~~~----~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
..++|+....+.+ +..+++++.+.+.+.+.||++..
T Consensus 164 ~~v~v~~l~pi~~~~~~~~~~~l~~~v~~~i~~~l~~~~~ 203 (211)
T cd07991 164 NVLEVEFLPVYTPSEEGEDPKEFANRVRLIMANKLGLPAT 203 (211)
T ss_pred eEEEEEECCCcccccCCCCHHHHHHHHHHHHHHhcCCCcc
Confidence 4566665555543 56788999999999999998653
No 333
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=21.23 E-value=83 Score=21.41 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=22.1
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
|.-+|+.++++-+.+.++|.++|.+.
T Consensus 72 ~k~dPe~~eEmeK~~~~LL~EELkLq 97 (176)
T PF06364_consen 72 GKHDPEVSEEMEKNFVDLLSEELKLQ 97 (176)
T ss_pred ccCChhhhHHHHhhHHHHHHHHHHHH
Confidence 45679999999999999999998753
No 334
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=21.00 E-value=2.9e+02 Score=18.91 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeC-CceeeecCCCCCeeEEEEEee-eCC--ChHHhHHHHHH
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKG-SVPMSFGGTEDPAAYGELVSI-GGL--NPDVNKKLSAA 80 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~-~~~m~~gg~~~p~~~v~l~~~-~~~--~~~~~~~~~~~ 80 (114)
.+.+..++.+++.+.++- ..++|.++. ..+|..-|..++.+-..-... |.+ ++..+.++.+.
T Consensus 112 QERlT~qIa~~l~~~l~p--~gV~V~ieA~H~Cm~mRGv~~~~s~t~T~a~~G~f~~~~~~r~ef~~~ 177 (180)
T TIGR00063 112 QERLTQQIAEALQEILEP--NGVAVVVEATHMCMKMRGIRKPGSATVTSALGGLFKSDQKTRAEFLRL 177 (180)
T ss_pred HHHHHHHHHHHHHHhhCC--CCEEEEEEEEEeeEeeeCeecCCCcEEEEEeeeEeCCCHHHHHHHHHH
Confidence 466667777777777663 456665542 245666676666554444444 434 34555555443
No 335
>COG5488 Integral membrane protein [Function unknown]
Probab=20.95 E-value=1.5e+02 Score=19.84 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.6
Q ss_pred CChHHhHHHHHHHHHHHHh
Q 033640 69 LNPDVNKKLSAAISAILEK 87 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~ 87 (114)
++|+.++.+++++.+.|.+
T Consensus 143 L~Pd~Re~fa~af~~aLat 161 (164)
T COG5488 143 LNPDDRESFAAAFSRALAT 161 (164)
T ss_pred cChHHHHHHHHHHHHHHHh
Confidence 6899999999999988754
No 336
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=20.94 E-value=4.9e+02 Score=21.60 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCC--c-c--EEEEEEeCCceeeecCCCCCeeEEEEEeeeCCC----
Q 033640 1 MPCLNISTNVKLDG-VDTSSILSEATSTVANIIGKP--E-A--YVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLN---- 70 (114)
Q Consensus 1 MP~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp--~-~--~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~---- 70 (114)
+|+|+|-|-....+ ++..+|+..+...+-- +|.. + . ++-|.+ .+.+ .+-++|+.++.++
T Consensus 183 iPLiEIvtePd~~s~~ea~~~~~~l~~il~~-~g~~~~e~GslR~DvNv----Sv~~------g~rvEiKnlns~~~v~~ 251 (630)
T PRK04028 183 IPLIEISTAPDIHSPEQAKEVALKIGMLLRS-TGKVKRGLGTIRQDVNV----SIAG------GARVEIKGVQKLDLIPK 251 (630)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHHHH-hCCCCccCCCeeEEEEE----eccC------CceeeecCCCcHHHHHH
Confidence 59999999887544 4456788887766543 3422 1 1 222211 1222 2679999888765
Q ss_pred ---hHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 71 ---PDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 71 ---~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
-|.+++....=.+---+..|.++-
T Consensus 252 ai~yE~~RQ~~lltY~EAM~rYGSDKP 278 (630)
T PRK04028 252 VVEYEVQRQLNLLKIRDELKERGASVE 278 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344444433222223355676533
No 337
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.92 E-value=3.4e+02 Score=19.78 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCC-C-ccEEEEEEeCCceeeecCCCCCeeE
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGK-P-EAYVMIVLKGSVPMSFGGTEDPAAY 60 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~k-p-~~~i~v~~~~~~~m~~gg~~~p~~~ 60 (114)
|+|.|.+|....+.-..+-+-++.+++++.... | .+.+.+--. ..+.+--...|..|
T Consensus 143 pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaS--G~LSH~l~~~p~G~ 201 (278)
T PRK13364 143 KVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVVVIGT--GGLSHQLDGERAGF 201 (278)
T ss_pred CEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEe--CccccCCCCCCccc
Confidence 789999988763332244455777777777654 2 234444333 23444433566655
No 338
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=20.84 E-value=2.5e+02 Score=18.74 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=19.5
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCC
Q 033640 4 LNISTNVKLDGVDTSSILSEATSTVANIIGK 34 (114)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~k 34 (114)
++|+|..+.++. -.+.+.+.+.+.+|+
T Consensus 106 ~~V~SA~~Ls~~----q~~~i~~~l~~~~g~ 132 (176)
T PRK08474 106 GVVYSNEKLSEE----TLKKLEEKLSKKFNA 132 (176)
T ss_pred EEEEECccCCHH----HHHHHHHHHHHHhCC
Confidence 567777777644 455778888888887
No 339
>PLN02837 threonine-tRNA ligase
Probab=20.75 E-value=4.7e+02 Score=21.35 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.5
Q ss_pred eecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC
Q 033640 50 SFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 50 ~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
..|.+.+...|+++.. ..++++..+++-+.+.+.+.+.+.|
T Consensus 68 ~ig~~~~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~pI 108 (614)
T PLN02837 68 TIGPWIENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLPL 108 (614)
T ss_pred EECCccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 3343445568899886 5789999889888888888887655
No 340
>PF08608 Wyosine_form: Wyosine base formation; InterPro: IPR013917 The proteins in this entry appear to be important in wyosine base formation in a subset of phenylalanine specific tRNAs. It has been proposed that it participates in converting tRNA(Phe)-m(1)G(37) to tRNA(Phe)-yW []. ; PDB: 2YX0_A 2Z2U_A.
Probab=20.65 E-value=1e+02 Score=17.21 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=5.3
Q ss_pred eEEEEEeee
Q 033640 59 AYGELVSIG 67 (114)
Q Consensus 59 ~~v~l~~~~ 67 (114)
.||||+...
T Consensus 5 ~fVEvKa~~ 13 (62)
T PF08608_consen 5 DFVEVKAYM 13 (62)
T ss_dssp SEEEEEE--
T ss_pred cEEEEecCc
Confidence 478888654
No 341
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.52 E-value=99 Score=13.41 Aligned_cols=19 Identities=11% Similarity=0.461 Sum_probs=13.4
Q ss_pred CCCCCcEEEEEEeCCCCCc
Q 033640 90 SVPKSRFFIKFYDTKASHF 108 (114)
Q Consensus 90 gi~~~ri~I~f~~~~~~~~ 108 (114)
|++.++|+-.++|-...-|
T Consensus 1 gL~~n~I~~i~~D~~G~lW 19 (24)
T PF07494_consen 1 GLPNNNIYSIYEDSDGNLW 19 (24)
T ss_dssp TBSSSCEEEEEE-TTSCEE
T ss_pred CCCCCeEEEEEEcCCcCEE
Confidence 5678888888888766554
No 342
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.22 E-value=98 Score=16.72 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcCCC
Q 033640 78 SAAISAILEKKLSVP 92 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~ 92 (114)
++.|+++|++++||.
T Consensus 7 ~~~i~~~I~~~fgv~ 21 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVK 21 (60)
T ss_pred HHHHHHHHHHHHCCE
Confidence 467899999999985
No 343
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=20.17 E-value=2.4e+02 Score=17.79 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=12.3
Q ss_pred hhcCCCCCcEEEEEEe
Q 033640 87 KKLSVPKSRFFIKFYD 102 (114)
Q Consensus 87 ~~Lgi~~~ri~I~f~~ 102 (114)
..+.+|..|+||++..
T Consensus 36 ~g~~~p~~~i~VNlap 51 (121)
T PF13541_consen 36 SGFPFPNQDITVNLAP 51 (121)
T ss_pred cCCCCCcceeeeEEEe
Confidence 4455789999999864
No 344
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=20.07 E-value=97 Score=21.03 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=18.0
Q ss_pred HHHHH-HHHHHHHhhcCCCCCcEEE
Q 033640 75 KKLSA-AISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 75 ~~~~~-~i~~~l~~~Lgi~~~ri~I 98 (114)
..+.+ ++.+.+ +++|+++++|++
T Consensus 210 ~~~~~~~~~~~l-~~~G~~~~~i~~ 233 (234)
T cd06183 210 PPMIEGAVKGLL-KELGYKKDNVFK 233 (234)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHEEe
Confidence 45666 777888 468999999986
No 345
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=20.04 E-value=2.5e+02 Score=17.83 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=25.9
Q ss_pred EEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCC
Q 033640 63 LVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASH 107 (114)
Q Consensus 63 l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~ 107 (114)
+-.-|+++++.|+.+.+ +.+.+++..+++ ++..|-+.....
T Consensus 5 lvgHGSR~~~~~~~~~~-la~~l~~~~~~~---v~~afle~~~P~ 45 (125)
T cd03415 5 IITHGSRRNTFNEDMEE-WAAYLERKLGVP---VYLTYNEYAEPN 45 (125)
T ss_pred EEecCCCChHHHHHHHH-HHHHHHhccCCc---eEEEEeecCCCC
Confidence 34567788887665554 777777666665 666666654433
No 346
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=20.00 E-value=1.2e+02 Score=21.68 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 77 LSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
-+..+++.+.++||++|+++.+.=
T Consensus 201 tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 201 TYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp -HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred CHHHHHHHHHHHHCCChHHEEEEE
Confidence 345578888889999999775543
Done!