Query 033640
Match_columns 114
No_of_seqs 107 out of 675
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3djh_A Macrophage migration in 100.0 3.5E-42 1.2E-46 217.9 12.2 111 2-113 1-111 (114)
2 4dh4_A MIF; trimer, isomerase; 100.0 6.6E-42 2.2E-46 216.5 11.3 112 2-113 1-112 (114)
3 3kan_A D-dopachrome tautomeras 100.0 1.4E-41 4.8E-46 216.0 11.1 111 2-113 1-112 (117)
4 3t5s_A Gilaa.00834.A, macropha 100.0 9.7E-42 3.3E-46 221.5 9.7 112 1-113 22-133 (135)
5 3fwu_A Macrophage migration in 100.0 3E-41 1E-45 218.7 11.0 111 1-113 21-131 (133)
6 3fwt_A Macrophage migration in 100.0 7.3E-41 2.5E-45 216.9 11.8 111 1-113 21-131 (133)
7 1uiz_A MIF, macrophage migrati 100.0 1.8E-38 6.3E-43 200.7 12.3 112 1-113 1-112 (115)
8 2xcz_A Possible ATLS1-like lig 100.0 4.1E-38 1.4E-42 199.1 12.8 112 1-113 1-112 (115)
9 2os5_A Acemif; macrophage migr 100.0 4.6E-38 1.6E-42 200.1 11.7 112 1-113 1-112 (119)
10 1hfo_A Migration inhibitory fa 100.0 1.8E-37 6E-42 195.6 12.1 111 2-113 1-111 (113)
11 2wkb_A Macrophage migration in 100.0 2.6E-37 8.9E-42 198.2 10.2 112 2-113 1-112 (125)
12 3b64_A Macrophage migration in 100.0 1.6E-36 5.4E-41 191.1 11.4 109 2-113 1-110 (112)
13 2aal_A Malonate semialdehyde d 100.0 1.7E-31 6E-36 172.2 13.3 112 1-113 1-120 (131)
14 1mww_A Hypothetical protein HI 100.0 7.2E-29 2.5E-33 159.3 9.3 110 4-113 2-114 (128)
15 3n4h_A Putative tautomerase; C 99.9 7.2E-25 2.4E-29 143.8 10.3 112 3-114 2-118 (148)
16 3mlc_A FG41 malonate semialdeh 99.9 3.8E-23 1.3E-27 134.0 12.8 111 2-113 1-119 (136)
17 3c6v_A Probable tautomerase/de 99.9 7.3E-22 2.5E-26 131.2 9.7 112 1-113 22-139 (161)
18 3mf7_A CIS-3-chloroacrylic aci 99.8 4.4E-18 1.5E-22 111.7 9.2 111 4-114 3-118 (149)
19 1u9d_A Hypothetical protein VC 99.7 2.4E-17 8.1E-22 104.4 10.0 105 1-113 16-120 (122)
20 2opa_A Probable tautomerase YW 99.6 2.5E-16 8.7E-21 88.2 5.7 54 60-113 2-55 (61)
21 1otf_A 4-oxalocrotonate tautom 99.6 5.3E-16 1.8E-20 87.1 5.6 54 60-113 2-55 (62)
22 3abf_A 4-oxalocrotonate tautom 99.6 1.8E-15 6.1E-20 85.5 6.0 55 59-113 2-56 (64)
23 3m21_A Probable tautomerase HP 99.6 4.6E-15 1.6E-19 84.8 6.5 54 60-113 2-58 (67)
24 3m20_A 4-oxalocrotonate tautom 99.6 3.8E-15 1.3E-19 84.0 5.8 53 60-113 2-54 (62)
25 3ry0_A Putative tautomerase; o 99.5 9.5E-15 3.2E-19 83.0 5.7 54 60-113 2-55 (65)
26 3mb2_A 4-oxalocrotonate tautom 99.5 1.7E-14 5.9E-19 83.6 6.0 54 60-113 3-56 (72)
27 2x4k_A 4-oxalocrotonate tautom 99.5 2.4E-14 8.1E-19 80.2 5.7 55 59-113 4-58 (63)
28 3ej9_A Alpha-subunit of trans- 99.5 2.3E-14 7.7E-19 84.0 5.6 54 60-113 3-56 (76)
29 3e6q_A Putative 5-carboxymethy 99.5 1.2E-12 3.9E-17 85.5 11.2 111 1-111 22-138 (146)
30 1otg_A 5-carboxymethyl-2-hydro 99.4 4.8E-12 1.6E-16 80.6 9.6 110 2-111 1-118 (125)
31 1gyx_A YDCE, B1461, hypothetic 99.4 1.1E-12 3.8E-17 76.6 5.4 51 60-110 2-53 (76)
32 3abf_A 4-oxalocrotonate tautom 99.3 2.6E-12 9E-17 72.2 4.5 55 1-55 1-57 (64)
33 3ej9_B Beta-subunit of trans-3 99.3 6.3E-12 2.2E-16 70.9 5.9 55 60-114 2-56 (70)
34 2x4k_A 4-oxalocrotonate tautom 99.2 3.7E-11 1.3E-15 67.0 4.9 55 1-55 3-59 (63)
35 3mb2_A 4-oxalocrotonate tautom 99.1 1.6E-10 5.4E-15 66.6 5.1 55 1-55 1-57 (72)
36 3ej9_A Alpha-subunit of trans- 98.9 1.5E-09 5E-14 63.3 4.9 55 1-55 1-57 (76)
37 3n4h_A Putative tautomerase; C 98.7 1.8E-08 6.2E-13 65.4 5.5 54 60-113 2-56 (148)
38 2aal_A Malonate semialdehyde d 98.7 4E-08 1.4E-12 62.5 7.0 53 60-112 3-55 (131)
39 3m20_A 4-oxalocrotonate tautom 98.7 2.2E-08 7.4E-13 55.9 5.0 53 2-55 1-55 (62)
40 3m21_A Probable tautomerase HP 98.7 5.2E-08 1.8E-12 55.1 5.4 54 2-55 1-59 (67)
41 3mlc_A FG41 malonate semialdeh 98.6 4.6E-08 1.6E-12 62.8 5.7 52 60-111 2-53 (136)
42 3mb2_B 4-oxalocrotonate tautom 98.6 1E-07 3.5E-12 53.9 6.2 48 60-107 2-51 (72)
43 3ry0_A Putative tautomerase; o 98.6 5.1E-08 1.7E-12 54.8 4.7 54 2-55 1-56 (65)
44 2opa_A Probable tautomerase YW 98.6 8.5E-08 2.9E-12 52.9 4.7 54 2-55 1-56 (61)
45 3c6v_A Probable tautomerase/de 98.6 1.7E-07 5.7E-12 61.9 6.6 56 57-113 21-77 (161)
46 3mf7_A CIS-3-chloroacrylic aci 98.6 1.2E-07 4.2E-12 61.8 5.6 52 62-113 4-56 (149)
47 1otf_A 4-oxalocrotonate tautom 98.5 1.5E-07 5.3E-12 51.9 4.9 54 2-55 1-56 (62)
48 1mww_A Hypothetical protein HI 98.5 8.4E-08 2.9E-12 60.7 2.8 52 61-112 2-53 (128)
49 2wkb_A Macrophage migration in 98.1 5.5E-06 1.9E-10 52.1 5.5 55 1-55 57-113 (125)
50 3ej9_B Beta-subunit of trans-3 98.1 1.3E-05 4.4E-10 45.2 5.9 54 2-55 1-56 (70)
51 3b64_A Macrophage migration in 98.0 1.1E-05 3.6E-10 49.7 5.5 54 1-54 57-110 (112)
52 1gyx_A YDCE, B1461, hypothetic 98.0 7E-06 2.4E-10 47.3 4.3 45 2-46 1-46 (76)
53 1hfo_A Migration inhibitory fa 98.0 1E-05 3.4E-10 49.8 4.7 54 1-54 56-111 (113)
54 2xcz_A Possible ATLS1-like lig 97.9 2E-05 6.8E-10 48.6 5.2 55 1-55 57-113 (115)
55 1uiz_A MIF, macrophage migrati 97.9 1.8E-05 6.2E-10 48.8 4.6 55 1-55 57-113 (115)
56 1u9d_A Hypothetical protein VC 97.9 1.9E-05 6.4E-10 49.8 4.4 52 1-54 67-120 (122)
57 2os5_A Acemif; macrophage migr 97.8 3.8E-05 1.3E-09 47.7 5.2 55 1-55 57-113 (119)
58 3t5s_A Gilaa.00834.A, macropha 97.4 0.00034 1.2E-08 44.6 5.5 53 3-55 80-134 (135)
59 3fwu_A Macrophage migration in 97.3 0.00048 1.6E-08 43.8 5.6 52 3-54 80-131 (133)
60 4dh4_A MIF; trimer, isomerase; 97.2 0.00035 1.2E-08 43.0 3.8 52 3-54 59-112 (114)
61 3fwt_A Macrophage migration in 97.0 0.0033 1.1E-07 39.8 6.9 57 55-113 18-74 (133)
62 3djh_A Macrophage migration in 96.9 0.0015 5.1E-08 40.1 4.7 52 3-54 58-111 (114)
63 3mb2_B 4-oxalocrotonate tautom 96.7 0.0035 1.2E-07 35.4 4.5 43 2-44 1-45 (72)
64 1otg_A 5-carboxymethyl-2-hydro 95.8 0.0054 1.9E-07 38.4 2.7 45 1-45 60-108 (125)
65 3kan_A D-dopachrome tautomeras 95.5 0.024 8.3E-07 34.9 4.8 52 3-54 58-112 (117)
66 2y9j_Y Lipoprotein PRGK, prote 91.3 0.95 3.2E-05 29.6 6.8 77 22-102 91-169 (170)
67 1n91_A ORF, hypothetical prote 88.3 1.7 5.7E-05 26.4 5.7 57 38-99 16-73 (108)
68 3e6q_A Putative 5-carboxymethy 86.4 0.78 2.7E-05 29.3 3.6 43 3-45 84-129 (146)
69 1jwq_A N-acetylmuramoyl-L-alan 82.0 8.3 0.00028 25.1 8.7 71 17-91 101-178 (179)
70 3lax_A Phenylacetate-coenzyme 79.9 2.9 0.0001 24.5 4.2 41 54-94 43-83 (109)
71 1yfs_A Alanyl-tRNA synthetase; 75.5 2.9 0.0001 31.6 3.8 30 74-103 104-133 (465)
72 1oey_A P67-PHOX, neutrophil cy 73.2 6.3 0.00021 22.7 4.1 40 62-108 17-56 (83)
73 3hrd_B Nicotinate dehydrogenas 67.4 12 0.00043 26.7 5.5 70 17-96 46-123 (330)
74 3lxy_A 4-hydroxythreonine-4-ph 67.1 6.7 0.00023 28.4 4.0 33 67-99 178-210 (334)
75 3gxs_A Phenylacetate-coenzyme 64.4 19 0.00063 21.0 6.1 69 23-102 18-88 (109)
76 3hrd_B Nicotinate dehydrogenas 63.1 8.6 0.0003 27.5 4.0 35 78-112 50-86 (330)
77 1t0a_A 2C-methyl-D-erythritol 62.8 7.4 0.00025 25.2 3.2 34 77-112 110-143 (159)
78 1yj7_A ESCJ; mixed alpha/beta, 62.5 29 0.00098 22.5 7.2 75 23-106 94-169 (171)
79 3fiq_A OBP1, RCG36470, odorant 62.5 9.5 0.00033 23.9 3.8 37 60-98 112-148 (157)
80 2w9j_A Signal recognition part 62.4 11 0.00039 21.9 3.8 72 17-89 5-82 (91)
81 1gx1_A 2-C-methyl-D-erythritol 61.5 8 0.00027 25.1 3.2 49 60-112 94-142 (160)
82 2pmp_A 2-C-methyl-D-erythritol 60.9 7.7 0.00026 25.1 3.0 48 61-112 97-144 (160)
83 3hy0_A Alanyl-tRNA synthetase; 59.5 10 0.00035 28.5 3.9 28 75-102 104-133 (441)
84 3re3_A 2-C-methyl-D-erythritol 59.4 8.1 0.00028 25.1 2.9 49 60-112 99-147 (162)
85 3k13_A 5-methyltetrahydrofolat 59.4 16 0.00054 25.9 4.8 41 58-98 134-177 (300)
86 2kxo_A Cell division topologic 59.2 20 0.0007 21.0 4.5 36 68-103 34-69 (95)
87 3f0d_A 2-C-methyl-D-erythritol 58.0 9.1 0.00031 25.3 3.0 49 60-112 116-164 (183)
88 3b6n_A 2-C-methyl-D-erythritol 57.3 38 0.0013 22.5 5.9 48 17-64 133-181 (187)
89 2kvr_A Ubiquitin carboxyl-term 56.1 33 0.0011 21.1 5.9 77 18-101 8-91 (130)
90 2pmp_A 2-C-methyl-D-erythritol 55.6 32 0.0011 22.2 5.3 40 18-57 109-148 (160)
91 1t0a_A 2C-methyl-D-erythritol 54.9 32 0.0011 22.2 5.2 40 18-57 108-147 (159)
92 3n3k_B Ubiquitin; hydrolase, p 54.4 14 0.00047 20.2 3.1 24 79-102 27-50 (85)
93 1gx1_A 2-C-methyl-D-erythritol 53.5 40 0.0014 21.7 5.5 40 18-57 107-146 (160)
94 1n91_A ORF, hypothetical prote 53.2 29 0.00098 20.9 4.5 34 7-41 39-72 (108)
95 3a9j_A Ubiquitin; protein comp 52.7 16 0.00053 19.3 3.1 22 80-101 25-46 (76)
96 3b6n_A 2-C-methyl-D-erythritol 52.3 16 0.00053 24.3 3.5 93 12-112 62-169 (187)
97 1yxo_A 4-hydroxythreonine-4-ph 52.1 48 0.0017 23.9 6.3 71 24-99 135-205 (328)
98 3re3_A 2-C-methyl-D-erythritol 51.9 41 0.0014 21.8 5.3 40 18-57 112-151 (162)
99 1ndd_A NEDD8, protein (ubiquit 51.6 17 0.00057 19.2 3.1 23 79-101 24-46 (76)
100 3ddv_A Transcriptional regulat 51.6 37 0.0013 20.4 6.0 75 26-104 20-95 (145)
101 3f0d_A 2-C-methyl-D-erythritol 51.5 39 0.0013 22.3 5.3 40 18-57 129-168 (183)
102 1wh3_A 59 kDa 2'-5'-oligoadeny 50.8 23 0.00077 19.5 3.7 23 79-101 31-53 (87)
103 3td3_A Outer membrane protein 50.8 19 0.00065 21.5 3.6 26 75-100 68-93 (123)
104 2ook_A Hypothetical protein; s 50.2 33 0.0011 20.7 4.6 47 57-104 18-64 (127)
105 1rm6_A 4-hydroxybenzoyl-COA re 50.2 11 0.00038 30.2 2.9 80 17-98 482-561 (769)
106 3lhe_A GNTR family transcripti 50.1 39 0.0013 20.2 6.2 73 26-105 23-99 (143)
107 3mtn_B UBA80, ubcep1, ubiquiti 49.2 15 0.00052 19.9 2.8 23 79-101 27-49 (85)
108 2e01_A Cysteine proteinase 1; 48.6 84 0.0029 23.7 8.1 67 17-108 213-283 (457)
109 2hi1_A 4-hydroxythreonine-4-ph 48.5 55 0.0019 23.6 6.1 70 24-99 142-211 (330)
110 1xov_A PLY protein, plypsa; al 47.6 72 0.0025 22.8 6.6 74 17-94 111-191 (326)
111 1wy8_A NP95-like ring finger p 47.4 27 0.00093 19.2 3.7 23 79-101 33-55 (89)
112 2dzi_A Ubiquitin-like protein 47.3 24 0.00081 19.0 3.4 22 80-101 32-53 (81)
113 1wxv_A BAG-family molecular ch 47.2 23 0.00078 19.9 3.4 23 79-101 35-57 (92)
114 3s26_A Neutrophil gelatinase-a 46.6 41 0.0014 21.5 4.9 41 69-110 142-185 (190)
115 3hma_A N-acetylmuramoyl-L-alan 45.9 34 0.0012 21.6 4.3 22 76-97 110-131 (157)
116 1wm3_A Ubiquitin-like protein 45.4 23 0.00077 19.1 3.0 21 81-101 27-47 (72)
117 2hqs_H Peptidoglycan-associate 45.1 46 0.0016 19.7 7.2 28 71-99 52-83 (118)
118 2faz_A Ubiquitin-like containi 45.0 24 0.00082 18.9 3.1 22 80-101 29-50 (78)
119 2kd0_A LRR repeats and ubiquit 45.0 24 0.00084 19.6 3.2 23 79-101 35-57 (85)
120 1t3q_B Quinoline 2-oxidoreduct 44.2 13 0.00043 29.9 2.4 79 17-98 507-585 (788)
121 2bwf_A Ubiquitin-like protein 44.0 26 0.00087 18.6 3.1 22 80-101 28-49 (77)
122 2kan_A Uncharacterized protein 44.0 31 0.0011 19.6 3.6 23 79-101 38-60 (94)
123 1ffv_B CUTL, molybdoprotein of 43.4 13 0.00043 30.0 2.3 80 17-98 523-602 (803)
124 1rm6_A 4-hydroxybenzoyl-COA re 43.4 25 0.00085 28.2 4.0 34 79-112 487-522 (769)
125 1sif_A Ubiquitin; hydrophobic 43.4 21 0.00073 19.9 2.8 23 79-101 33-55 (88)
126 1vku_A Acyl carrier protein; T 42.9 25 0.00085 20.4 3.1 25 72-96 13-37 (100)
127 1yx5_B Ubiquitin; proteasome, 42.6 28 0.00095 19.7 3.3 23 79-101 24-46 (98)
128 3phx_B Ubiquitin-like protein 42.3 27 0.00094 18.7 3.1 22 80-101 29-50 (79)
129 2io0_B Small ubiquitin-related 42.3 32 0.0011 19.7 3.5 21 81-101 31-51 (91)
130 3a4r_A Nfatc2-interacting prot 42.1 26 0.0009 19.3 3.0 22 80-101 33-54 (79)
131 1n62_B Carbon monoxide dehydro 42.1 13 0.00046 29.9 2.3 80 17-98 529-608 (809)
132 2w3s_B Xanthine dehydrogenase; 41.8 9.2 0.00031 30.7 1.3 80 17-98 489-568 (777)
133 3k9o_B Ubiquitin, UBB+1; E2-25 41.6 28 0.00094 19.5 3.1 23 79-101 25-47 (96)
134 1dd4_C 50S ribosomal protein L 41.3 24 0.00081 17.3 2.3 16 79-94 19-34 (40)
135 2kk8_A Uncharacterized protein 40.9 29 0.001 19.3 3.1 23 79-101 34-56 (84)
136 2kjr_A CG11242; UBL, ubiquitin 40.6 44 0.0015 19.2 3.9 24 79-102 41-64 (95)
137 2zws_A Neutral ceramidase; pri 40.6 51 0.0017 25.9 5.3 42 55-101 53-96 (646)
138 2daf_A FLJ35834 protein; hypot 40.4 32 0.0011 21.0 3.4 21 81-101 42-62 (118)
139 2q3l_A Uncharacterized protein 40.0 24 0.00081 21.4 2.8 46 57-103 18-63 (126)
140 2uyz_B Small ubiquitin-related 39.7 29 0.001 18.6 2.9 21 81-101 29-49 (79)
141 1qlm_A Methenyltetrahydrometha 39.4 25 0.00086 25.2 3.1 23 81-103 149-171 (316)
142 1wx7_A Ubiquilin 3; ubiquitin- 39.2 38 0.0013 19.6 3.5 22 80-101 41-62 (106)
143 2pa8_L DNA-directed RNA polyme 39.2 38 0.0013 19.5 3.4 26 2-29 53-78 (92)
144 2io1_B Small ubiquitin-related 39.1 29 0.00099 20.0 2.9 21 81-101 33-53 (94)
145 2v4i_A Glutamate N-acetyltrans 38.7 80 0.0027 20.6 5.4 33 69-101 72-104 (173)
146 2hj8_A Interferon-induced 17 k 38.5 29 0.00099 19.3 2.8 22 80-101 29-50 (88)
147 2lol_A ACP, acyl carrier prote 38.3 33 0.0011 18.3 3.0 22 75-96 5-26 (81)
148 2w3s_B Xanthine dehydrogenase; 38.2 26 0.00089 28.1 3.4 34 79-112 494-529 (777)
149 2l7r_A Ubiquitin-like protein 37.7 29 0.00098 19.6 2.8 23 79-101 41-63 (93)
150 4eew_A Large proline-rich prot 37.3 35 0.0012 18.7 3.1 21 81-101 43-63 (88)
151 1uh6_A Ubiquitin-like 5; beta- 37.3 30 0.001 20.4 2.8 24 78-101 51-74 (100)
152 1yqb_A Ubiquilin 3; structural 37.2 35 0.0012 19.7 3.1 23 79-101 45-67 (100)
153 2kj6_A Tubulin folding cofacto 37.2 49 0.0017 19.1 3.8 23 80-102 41-63 (97)
154 3aq9_A Group 1 truncated hemog 36.9 64 0.0022 18.9 5.2 61 16-94 42-102 (121)
155 2klc_A Ubiquilin-1; ubiquitin- 36.8 35 0.0012 19.6 3.1 22 80-101 49-70 (101)
156 1vra_A Arginine biosynthesis b 36.7 95 0.0033 20.9 6.0 33 69-101 103-135 (208)
157 3h0g_K DNA-directed RNA polyme 36.6 49 0.0017 20.3 3.8 26 2-29 70-95 (123)
158 2d07_B Ubiquitin-like protein 36.6 33 0.0011 19.6 2.9 21 81-101 43-63 (93)
159 2ebm_A RWD domain-containing p 36.5 40 0.0014 20.1 3.4 35 1-35 71-105 (128)
160 4gvq_A Methenyltetrahydrometha 36.3 30 0.001 24.9 3.1 23 81-103 149-171 (316)
161 3d2y_A N-acetylmuramoyl-L-alan 36.2 45 0.0016 22.9 4.0 28 69-97 122-149 (261)
162 3plu_A Ubiquitin-like modifier 36.1 38 0.0013 19.7 3.1 25 78-102 44-68 (93)
163 1v5t_A 8430435I17RIK protein; 36.1 43 0.0015 18.7 3.4 21 79-99 31-51 (90)
164 3dbh_I NEDD8; cell cycle, acti 35.9 24 0.00083 19.3 2.2 23 79-101 36-58 (88)
165 4fbj_B NEDD8; effector-HOST ta 35.9 33 0.0011 19.1 2.8 23 79-101 24-46 (88)
166 1wju_A NEDD8 ultimate buster-1 35.8 42 0.0014 19.7 3.3 23 79-101 43-65 (100)
167 3sao_A Extracellular fatty aci 35.6 53 0.0018 20.2 4.0 30 69-99 116-145 (160)
168 2cnr_A FAS, ACP, acyl carrier 35.5 39 0.0013 18.0 3.0 22 75-96 6-27 (82)
169 3v6c_B Ubiquitin; structural g 35.4 33 0.0011 19.1 2.8 23 79-101 41-63 (91)
170 1t0y_A Tubulin folding cofacto 35.2 51 0.0018 19.7 3.8 23 80-102 32-54 (122)
171 4b6w_A Tubulin-specific chaper 35.0 47 0.0016 18.7 3.3 23 81-103 30-52 (86)
172 2yci_X 5-methyltetrahydrofolat 35.0 69 0.0024 22.2 4.8 40 58-98 126-168 (271)
173 4dwf_A HLA-B-associated transc 34.9 41 0.0014 18.6 3.1 21 81-101 31-51 (90)
174 2db2_A KIAA0890 protein; DSRM 34.7 75 0.0026 19.3 4.3 33 61-94 63-96 (119)
175 2zze_A Alanyl-tRNA synthetase; 34.6 44 0.0015 26.9 4.1 34 74-112 163-196 (752)
176 3nvz_C Xanthine dehydrogenase/ 34.6 26 0.00087 28.1 2.8 34 79-112 474-509 (755)
177 3b21_A ORF169B, OSPI; bacteria 34.5 57 0.002 20.8 3.9 54 11-65 117-171 (220)
178 2p19_A Transcriptional regulat 34.4 74 0.0025 18.9 7.0 72 26-103 22-95 (149)
179 4hcn_B Polyubiquitin, ubiquiti 34.3 35 0.0012 19.4 2.8 23 79-101 46-68 (98)
180 2yz0_A Serine/threonine-protei 34.0 49 0.0017 20.0 3.6 35 1-35 78-112 (138)
181 2ztg_A Alanyl-tRNA synthetase; 33.9 18 0.0006 29.1 1.8 32 74-112 163-195 (739)
182 1wyw_B Ubiquitin-like protein 33.7 39 0.0013 19.2 2.9 21 81-101 47-67 (97)
183 3bx6_A Alpha-1-acid glycoprote 33.6 22 0.00076 23.3 2.0 30 69-99 129-158 (192)
184 2z5b_A Protein YPL144W, DMP1; 33.4 94 0.0032 19.8 6.5 27 16-43 95-121 (151)
185 1t6a_A Rbstp2229 gene product; 33.3 73 0.0025 19.6 4.1 37 53-90 74-110 (126)
186 2ojr_A Ubiquitin; lanthide-bin 33.3 54 0.0018 19.1 3.6 23 79-101 59-81 (111)
187 2ogg_A Trehalose operon transc 33.2 79 0.0027 18.9 5.9 74 26-103 23-97 (152)
188 3cyp_B Chemotaxis protein MOTB 32.7 48 0.0016 20.2 3.4 28 71-99 59-86 (138)
189 1v6e_A Cytoskeleton-associated 32.5 33 0.0011 19.4 2.4 24 79-102 32-55 (95)
190 1ffv_B CUTL, molybdoprotein of 32.3 40 0.0014 27.2 3.6 26 79-104 528-553 (803)
191 1x3o_A Acyl carrier protein; s 32.2 35 0.0012 18.1 2.4 22 75-96 4-25 (80)
192 1wjn_A Tubulin-folding protein 32.1 52 0.0018 18.6 3.3 23 80-102 37-59 (97)
193 1v5o_A 1700011N24RIK protein; 32.1 34 0.0012 19.7 2.5 23 79-101 35-57 (102)
194 2kzr_A Ubiquitin thioesterase 32.0 31 0.001 19.2 2.2 23 79-101 24-46 (86)
195 1iv3_A 2-C-methyl-D-erythritol 32.0 1E+02 0.0034 19.7 5.8 33 18-50 106-138 (152)
196 2ikk_A Hypothetical transcript 31.8 92 0.0031 19.2 6.2 74 26-103 44-119 (173)
197 3gzm_A Acyl carrier protein; h 31.2 37 0.0013 18.3 2.4 22 75-96 4-25 (81)
198 2qnw_A Acyl carrier protein; m 31.1 32 0.0011 18.6 2.2 22 75-96 6-27 (82)
199 1qd1_A Formiminotransferase-cy 30.7 1.1E+02 0.0036 22.1 5.2 28 65-92 94-121 (325)
200 1wx8_A Riken cDNA 4931431F19; 30.6 34 0.0012 19.2 2.3 22 80-101 41-62 (96)
201 1oi2_A Hypothetical protein YC 30.4 1.5E+02 0.0051 21.7 6.0 41 56-98 286-326 (366)
202 1w55_A ISPD/ISPF bifunctional 30.2 40 0.0014 24.4 3.0 48 61-112 303-350 (371)
203 3ne8_A N-acetylmuramoyl-L-alan 30.1 1.2E+02 0.0041 20.4 5.3 42 49-90 177-225 (234)
204 2kdi_A Ubiquitin, vacuolar pro 30.1 52 0.0018 19.4 3.1 23 79-101 33-55 (114)
205 3h90_A Ferrous-iron efflux pum 30.1 1.3E+02 0.0045 20.4 10.0 75 18-104 205-281 (283)
206 2kwl_A ACP, acyl carrier prote 29.9 40 0.0014 18.2 2.5 22 75-96 8-29 (84)
207 1twf_K B13.6, DNA-directed RNA 29.6 61 0.0021 19.7 3.4 26 2-29 71-96 (120)
208 3vdz_A Ubiquitin-40S ribosomal 29.5 54 0.0019 19.1 3.1 23 79-101 59-81 (111)
209 1f80_D Acyl carrier protein; t 29.4 31 0.0011 18.5 1.9 22 75-96 6-27 (81)
210 3f8l_A HTH-type transcriptiona 29.4 1.1E+02 0.0039 19.5 7.0 75 26-105 67-143 (201)
211 1j8c_A Ubiquitin-like protein 29.4 64 0.0022 19.4 3.5 23 79-101 55-77 (125)
212 2aiz_P Outer membrane protein 29.4 60 0.002 19.7 3.4 27 72-99 77-107 (134)
213 2dnw_A Acyl carrier protein; A 29.3 45 0.0016 18.9 2.7 25 72-96 11-35 (99)
214 2lxb_A Small glutamine-rich te 28.7 37 0.0012 19.0 2.0 19 71-89 4-22 (74)
215 2eke_C Ubiquitin-like protein 28.5 54 0.0018 19.4 2.9 21 81-101 56-76 (106)
216 1we7_A SF3A1 protein; structur 28.4 69 0.0024 18.7 3.5 21 81-101 61-81 (115)
217 2l76_A Nfatc2-interacting prot 28.2 56 0.0019 19.2 2.9 22 81-102 46-67 (95)
218 1e5p_A Aphrodisin; lipocalin, 28.2 89 0.003 18.8 4.1 29 69-98 114-142 (151)
219 1wh9_A 40S ribosomal protein S 28.1 90 0.0031 17.9 4.6 78 20-107 8-86 (92)
220 1ttn_A DC-UBP, dendritic cell- 28.0 64 0.0022 18.6 3.2 23 79-101 47-69 (106)
221 1yb0_A Prophage lambdaba02, N- 27.9 60 0.0021 20.3 3.3 22 76-97 106-127 (159)
222 1wgd_A Homocysteine-responsive 27.5 73 0.0025 17.7 3.4 23 79-101 33-57 (93)
223 1ooh_A Odorant binding protein 27.5 21 0.0007 21.0 0.9 28 68-95 2-29 (126)
224 2gpj_A Siderophore-interacting 27.5 79 0.0027 21.1 4.0 27 75-101 200-226 (252)
225 1of8_A Phospho-2-dehydro-3-deo 27.4 1.5E+02 0.0052 21.7 5.6 41 70-114 80-123 (370)
226 3m62_B UV excision repair prot 27.3 52 0.0018 19.0 2.7 23 79-101 25-47 (106)
227 1tke_A Threonyl-tRNA synthetas 27.2 93 0.0032 20.5 4.3 36 56-91 99-134 (224)
228 1vq8_X 50S ribosomal protein L 27.0 75 0.0026 18.5 3.3 23 76-98 29-51 (92)
229 2es9_A Putative cytoplasmic pr 26.8 82 0.0028 18.6 3.4 24 70-94 30-53 (115)
230 3m63_B Ubiquitin domain-contai 26.6 50 0.0017 19.0 2.6 24 78-101 50-73 (101)
231 3lno_A Putative uncharacterize 26.5 1E+02 0.0034 17.9 4.4 40 5-45 49-89 (108)
232 1bkr_A Spectrin beta chain; fi 26.3 58 0.002 19.2 2.8 25 69-93 54-78 (109)
233 2l3v_A ACP, acyl carrier prote 26.2 60 0.002 17.1 2.7 20 77-96 5-24 (79)
234 4gof_A Small glutamine-rich te 26.1 44 0.0015 17.3 2.0 16 74-89 2-17 (52)
235 2d88_A Protein mical-3; all al 25.9 65 0.0022 19.4 3.0 73 17-93 11-84 (121)
236 3goe_A DNA repair protein RAD6 25.9 76 0.0026 18.1 3.0 20 82-101 36-56 (82)
237 1wgg_A Ubiquitin carboxyl-term 25.8 42 0.0014 19.2 2.1 23 79-101 31-53 (96)
238 3h90_A Ferrous-iron efflux pum 25.8 1.1E+02 0.0036 20.9 4.5 28 17-46 253-280 (283)
239 2uzh_A 2C-methyl-D-erythritol 25.6 1.4E+02 0.0048 19.3 5.3 45 18-65 111-156 (165)
240 2ibf_B Invasin IPAA, 70 kDa an 25.5 43 0.0015 14.3 1.5 15 20-34 7-21 (26)
241 3v2l_A AGAP005208-PA; odorant 25.3 37 0.0013 19.7 1.8 27 70-96 2-28 (120)
242 2ve7_A Kinetochore protein HEC 25.2 26 0.00089 24.9 1.2 27 83-109 227-258 (315)
243 1dgj_A Aldehyde oxidoreductase 25.2 78 0.0027 25.9 4.1 33 80-112 662-699 (907)
244 2l9f_A CALE8, meacp; transfera 25.1 55 0.0019 19.4 2.5 20 77-96 15-34 (102)
245 2jxx_A Nfatc2-interacting prot 25.0 76 0.0026 18.4 3.1 21 81-101 52-72 (97)
246 1w55_A ISPD/ISPF bifunctional 24.7 1.6E+02 0.0053 21.3 5.4 40 18-57 315-354 (371)
247 1f6y_A 5-methyltetrahydrofolat 24.6 1.2E+02 0.0042 20.7 4.6 40 58-98 117-159 (262)
248 2kgw_A Outer membrane protein 24.4 89 0.003 18.6 3.5 27 72-99 71-101 (129)
249 2k8h_A Small ubiquitin protein 24.2 49 0.0017 19.7 2.2 21 81-101 52-72 (110)
250 1ais_A TBP, protein (tata-bind 23.9 1.5E+02 0.0052 19.2 5.5 45 56-101 52-103 (182)
251 1we6_A Splicing factor, putati 23.9 62 0.0021 18.8 2.6 21 81-101 57-77 (111)
252 2day_A Ring finger protein 25; 23.9 1.2E+02 0.0041 17.9 4.9 33 60-92 77-109 (128)
253 1wyl_A NEDD9 interacting prote 23.5 51 0.0017 19.7 2.2 73 17-93 9-82 (116)
254 3kyd_D Small ubiquitin-related 23.5 93 0.0032 18.7 3.4 21 81-101 66-86 (115)
255 1klp_A ACP, ACPM, meromycolate 23.5 78 0.0027 18.4 3.0 22 75-96 6-27 (115)
256 2ava_A ACP I, acyl carrier pro 23.4 68 0.0023 17.1 2.6 20 75-94 3-22 (82)
257 3kff_A MUP 4, major urinary pr 23.4 1.2E+02 0.0041 18.5 4.1 29 69-98 122-150 (162)
258 1t3q_B Quinoline 2-oxidoreduct 23.3 60 0.0021 26.0 3.1 26 79-104 512-537 (788)
259 2nlv_A XISI protein-like; XISI 23.3 12 0.00039 22.8 -0.8 22 81-103 80-101 (112)
260 4fhz_A Phospholipase/carboxyle 23.3 92 0.0031 21.3 3.8 20 80-99 143-162 (285)
261 3b08_A Polyubiquitin-C, ubiqui 23.3 78 0.0027 19.0 3.1 23 79-101 24-46 (152)
262 3cnv_A Putative GNTR-family tr 23.2 1.3E+02 0.0044 18.0 8.2 74 26-103 33-110 (162)
263 3l4r_A Allergen DOG 2, minor a 23.2 1E+02 0.0035 19.2 3.7 29 69-98 122-150 (170)
264 1wz0_A Ubiquitin-like protein 23.2 37 0.0013 20.0 1.5 21 81-101 50-70 (104)
265 1n62_B Carbon monoxide dehydro 23.1 67 0.0023 25.9 3.4 26 79-104 534-559 (809)
266 1uwd_A Hypothetical protein TM 23.1 1.1E+02 0.0039 17.4 3.9 37 5-42 47-83 (103)
267 1ukx_A GCN2, GCN2 EIF2alpha ki 23.0 83 0.0028 18.8 3.2 34 2-35 80-113 (137)
268 3j0l_J Ribosomal protein L10; 22.9 1.7E+02 0.0057 19.8 4.8 89 15-110 61-171 (219)
269 3hfi_A Putative regulator; str 22.8 1.4E+02 0.0047 18.3 5.6 74 26-103 38-113 (170)
270 1yqe_A Hypothetical UPF0204 pr 22.8 2E+02 0.0069 20.1 10.1 65 19-87 115-183 (282)
271 1wi3_A DNA-binding protein SAT 22.8 5.3 0.00018 22.3 -2.2 34 69-102 14-58 (71)
272 2cx6_A Hypothetical protein YH 22.7 75 0.0026 18.0 2.7 31 1-38 1-31 (90)
273 2eix_A NADH-cytochrome B5 redu 22.5 72 0.0025 20.8 3.0 23 75-98 220-242 (243)
274 3tuf_A Stage III sporulation p 22.4 27 0.00092 23.4 0.8 38 59-102 158-195 (197)
275 1v86_A DNA segment, CHR 7, way 22.1 27 0.00091 19.9 0.7 23 79-101 40-62 (95)
276 2bk9_A CG9734-PA; oxygen trans 22.1 67 0.0023 19.7 2.6 24 68-91 100-123 (153)
277 3d7q_A XISI protein-like; stru 22.0 12 0.00042 22.7 -0.8 22 81-103 80-101 (112)
278 2nwv_A XISI protein-like; YP_3 22.0 13 0.00043 22.7 -0.8 22 81-103 82-103 (114)
279 1bj7_A D 2; allergen, lipocali 21.9 89 0.0031 18.9 3.2 29 69-98 119-147 (156)
280 2cs4_A Protein C12ORF2; GTP bi 21.9 1.3E+02 0.0044 17.6 4.9 36 17-52 26-61 (95)
281 2lxa_A Ubiquitin-like protein 21.8 1.1E+02 0.0037 17.1 3.3 23 79-101 27-50 (87)
282 3hcn_A Ferrochelatase, mitocho 21.8 2.3E+02 0.0079 20.4 10.2 73 18-108 167-246 (359)
283 3r9j_C MINE, cell division top 21.8 25 0.00085 19.8 0.5 36 68-103 22-57 (77)
284 2fa1_A Probable transcriptiona 21.7 1.2E+02 0.0043 18.1 3.9 74 26-103 34-108 (160)
285 1qfj_A Protein (flavin reducta 21.6 79 0.0027 20.4 3.1 24 75-98 203-226 (232)
286 4dh9_Y YAEJ; ribosome, YAEJ, r 21.4 1.2E+02 0.0043 18.8 3.8 37 60-96 69-106 (140)
287 3rt3_B Ubiquitin-like protein 21.3 1.5E+02 0.0051 18.1 5.8 24 78-101 104-127 (159)
288 1x1m_A Ubiquitin-like protein 21.3 1.3E+02 0.0044 17.3 3.7 24 78-101 47-73 (107)
289 2ju1_A Erythronolide synthase; 21.2 94 0.0032 17.0 3.0 26 71-96 15-41 (95)
290 2dzm_A FAS-associated factor 1 21.2 58 0.002 19.0 2.1 22 79-100 32-53 (100)
291 2k1s_A Inner membrane lipoprot 21.1 1.1E+02 0.0037 18.8 3.5 28 71-99 80-111 (149)
292 3j1z_P YIIP, cation efflux fam 21.1 2.1E+02 0.0072 19.8 5.7 76 18-105 214-291 (306)
293 1wh5_A ZF-HD homeobox family p 21.0 7.6 0.00026 21.8 -1.9 34 69-102 24-71 (80)
294 3b1l_X E3 ubiquitin-protein li 26.3 21 0.00071 19.0 0.0 23 79-101 24-46 (76)
295 1j3g_A AMPD protein, AMPD; mix 20.9 95 0.0032 20.0 3.3 28 69-97 125-152 (187)
296 2okg_A Central glycolytic gene 20.8 1.8E+02 0.0062 19.5 4.8 75 18-98 40-121 (255)
297 1xpp_A TA1416, DNA-directed RN 20.5 1.4E+02 0.0046 18.0 3.7 25 2-29 63-87 (115)
298 1xkr_A Chemotaxis protein CHEC 20.5 1.8E+02 0.006 18.6 6.6 67 19-85 18-92 (206)
299 3ip4_B Aspartyl/glutamyl-tRNA( 20.5 2.2E+02 0.0076 21.6 5.6 63 1-70 146-218 (483)
300 2nrq_A Hypothetical protein OR 20.4 1.7E+02 0.006 18.5 5.5 89 1-102 3-103 (159)
301 3hjz_A Transaldolase B; parach 20.3 1.8E+02 0.0062 20.9 4.8 42 59-101 97-138 (334)
302 3p7i_A PHND, subunit of alkylp 20.2 1.4E+02 0.0047 20.7 4.2 40 53-92 8-47 (321)
303 4a17_H RPL10, 60S ribosomal pr 20.1 2.1E+02 0.0071 19.3 6.0 90 15-111 63-174 (215)
304 3m16_A Transaldolase; dimer, m 20.0 1.8E+02 0.0063 20.8 4.8 42 59-101 101-142 (329)
305 3tkf_A Transaldolase; structur 20.0 1.8E+02 0.0063 21.0 4.8 42 59-101 120-161 (345)
No 1
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=100.00 E-value=3.5e-42 Score=217.86 Aligned_cols=111 Identities=30% Similarity=0.533 Sum_probs=108.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
|+++++||++.+++ +++|++++++++|+++|||++||||+++++++|+|||+++||+|++|+++|++++++|++++++|
T Consensus 1 P~i~~~TNv~~~~~-~~~~~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i 79 (114)
T 3djh_A 1 PMFIVNTNVPRASV-PDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLL 79 (114)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHH
T ss_pred CEEEEEecCCcccc-cHHHHHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCCEEEEEEEEccCCCHHHHHHHHHHH
Confidence 99999999999886 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++++|||+++|+||.|+|++++||||||-
T Consensus 80 ~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~ 111 (114)
T 3djh_A 80 CGLLAERLRISPDRVYINYYDMNAANVGWNNS 111 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred HHHHHHHhCcCcceEEEEEEECCHHHeeECCE
Confidence 99999999999999999999999999999994
No 2
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=100.00 E-value=6.6e-42 Score=216.49 Aligned_cols=112 Identities=34% Similarity=0.544 Sum_probs=109.7
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
|+++|+||++.+++++++|++++++++|+++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++|
T Consensus 1 P~i~~~TNv~~~~~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i 80 (114)
T 4dh4_A 1 PKCMIFCPVAATPAQQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPCAFIRVASIGGITSSTNCKIAAAL 80 (114)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCCEEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCeEEEEEEEEcCCCHHHHHHHHHHH
Confidence 99999999999777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++++++|||+++|+||.|+|++++||||||-
T Consensus 81 ~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~ 112 (114)
T 4dh4_A 81 SAACERHLGVPKNRIYTTFTNKSPSEWAMGDR 112 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEEECGGGCEETTE
T ss_pred HHHHHHHhCcCcccEEEEEEeCCHHHeEECCE
Confidence 99999999999999999999999999999994
No 3
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=100.00 E-value=1.4e-41 Score=216.00 Aligned_cols=111 Identities=24% Similarity=0.436 Sum_probs=107.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCCh-HHhHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNP-DVNKKLSAA 80 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~-~~~~~~~~~ 80 (114)
|+++|+||++.+++ +++|++++++++|+++|||++||||+++++++|+|||+++||+|++|+++|++++ ++|++++++
T Consensus 1 P~i~l~TNv~~~~~-~~~l~~~ls~~~a~~lgKpe~~vmV~v~~~~~m~fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~ 79 (117)
T 3kan_A 1 PFLELDTNLPANRV-PAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAH 79 (117)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEecCccccc-hHHHHHHHHHHHHHHHCCChHHEEEEEeCCCeEEECCCCCceEEEEEEEecCCCcHHHHHHHHHH
Confidence 99999999999877 4789999999999999999999999999999999999999999999999999976 789999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|+++++++|||+++|+||.|+|++++||||||-
T Consensus 80 i~~~l~~~Lgi~~~RiyI~f~d~~~~~~G~nG~ 112 (117)
T 3kan_A 80 FFEFLTKELALGQDRILIRFFPLESWQIGKIGT 112 (117)
T ss_dssp HHHHHHHHHTCCGGGEEEEEEEECGGGCEETTE
T ss_pred HHHHHHHHhCcCcCeEEEEEEEcCHHHeeeCCE
Confidence 999999999999999999999999999999994
No 4
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=100.00 E-value=9.7e-42 Score=221.51 Aligned_cols=112 Identities=27% Similarity=0.477 Sum_probs=94.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||++.+++++++|++++++++++++|||++|+||+++ ++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 22 MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~~~s~~ 100 (135)
T 3t5s_A 22 MPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNPSISAA 100 (135)
T ss_dssp CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCHHHHHH
T ss_pred cceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCchHHHH
Confidence 99999999999988778999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|+++++++|||+++|+||.|.|++++||||||-
T Consensus 101 i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~ 133 (135)
T 3t5s_A 101 ITGCLTQHFKVKPERVYISFNEAKGHNWGFNGS 133 (135)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEC-----------
T ss_pred HHHHHHHhcccCccEEEEEeccccCcccccCCC
Confidence 999999999999999999999999999999994
No 5
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=100.00 E-value=3e-41 Score=218.73 Aligned_cols=111 Identities=24% Similarity=0.490 Sum_probs=108.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||++.+++++++|++++++++++++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 21 MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~ 100 (133)
T 3fwu_A 21 MPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSI 100 (133)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCEEEEEEEEcCCCCHHHHHHHHHH
Confidence 99999999999998866789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|+++++++|||+++|+||.|+|+ +||||||-
T Consensus 101 i~~~l~~~LgI~~~riyI~f~d~--~~wG~nG~ 131 (133)
T 3fwu_A 101 VTAAITKECGIVADRIFVLYFSP--LHCGWNGT 131 (133)
T ss_dssp HHHHHHHHHCCCGGGEEEEEECC--SCCEETTE
T ss_pred HHHHHHHHhCcChhhEEEEEEEH--HHEeeCcE
Confidence 99999999999999999999999 99999994
No 6
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=100.00 E-value=7.3e-41 Score=216.91 Aligned_cols=111 Identities=30% Similarity=0.527 Sum_probs=108.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||++.++++.++|++++++++++++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 21 MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~ 100 (133)
T 3fwt_A 21 MPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKPKMMTPR 100 (133)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCeEEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999987778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|+++++++|||+++|+||.|+|++ ||||||.
T Consensus 101 i~~~l~~~LgI~~~rvyI~f~d~~--~wg~nG~ 131 (133)
T 3fwt_A 101 IAAAITKECGIPAERIYVFYYSTK--HCGWNGT 131 (133)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEES--CCEETTE
T ss_pred HHHHHHHHhCcChhhEEEEEEEhh--hEeECCE
Confidence 999999999999999999999998 9999994
No 7
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=100.00 E-value=1.8e-38 Score=200.74 Aligned_cols=112 Identities=36% Similarity=0.588 Sum_probs=110.2
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||+..+++ +++|++++++++++++|||+++++|.++++..|+|||+++|++|++|++++++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~~~eqk~~l~~~ 79 (115)
T 1uiz_A 1 MPVFTIRTNVCRDSV-PDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKL 79 (115)
T ss_dssp CCEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHH
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCcChhHEEEEEECCcceEECCCCCCeEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.+++.||++++|+||.|+|++++||||||.
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 112 (115)
T 1uiz_A 80 LCDILTKQLNIPANRVYINYYDLNAANVGWNGS 112 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred HHHHHHHHhCcCcceEEEEEEECCHHHeeeCCE
Confidence 999999999999999999999999999999995
No 8
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=100.00 E-value=4.1e-38 Score=199.11 Aligned_cols=112 Identities=35% Similarity=0.618 Sum_probs=109.2
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|++|...+++ +++|++++++++++++|||+++++|+++++..|+|||+++|++|++|++++++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~ 79 (115)
T 2xcz_A 1 MPLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSEL 79 (115)
T ss_dssp -CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHH
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCCCCcEEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.+++.||++++|+||.|+|++++||||||.
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 112 (115)
T 2xcz_A 80 VCGHIEQNLGIPADRIYIGFEDVPARLWGWNGS 112 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGCEETTE
T ss_pred HHHHHHHHhCcCcccEEEEEEECCHHHeeeCCE
Confidence 999999999999999999999999999999995
No 9
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=100.00 E-value=4.6e-38 Score=200.10 Aligned_cols=112 Identities=24% Similarity=0.421 Sum_probs=109.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+++|+||+..+++ +++|++++++++++++|||+++++|.++++..|+|||+.+|++|++|++++++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~ 79 (119)
T 2os5_A 1 MPMVRVATNLPDKDV-PANFEERLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPVAVIKVESIGALSADDNIRHTQK 79 (119)
T ss_dssp -CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCchh-HHHHHHHHHHHHHHHHCcChHHEEEEEECCccEEEcCCCCCeEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.++++||++++|+||.|+|++++||||||-
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 112 (119)
T 2os5_A 80 ITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGT 112 (119)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGCEETTE
T ss_pred HHHHHHHHhCcCcccEEEEEEECCHHHeeECCE
Confidence 999999999999999999999999999999995
No 10
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=100.00 E-value=1.8e-37 Score=195.61 Aligned_cols=111 Identities=36% Similarity=0.669 Sum_probs=109.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
|+++|+||++.+++ +++|++++++++++++|||++++||+++++..|+|||+++|++|++|++++++++++|++++++|
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~~~~~~~i~i~~~~g~~~eqk~~l~~~i 79 (113)
T 1hfo_A 1 PIFTLNTNIKATDV-PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKL 79 (113)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSSCSHHHHHHHHHHH
T ss_pred CEEEEEecCCCccc-HHHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCCCCCeEEEEEEEecCCCHHHHHHHHHHH
Confidence 99999999999988 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
++.++++||++++|+||.|+|++++||||||.
T Consensus 80 ~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 111 (113)
T 1hfo_A 80 FDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGT 111 (113)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred HHHHHHHhCcCcCeEEEEEEECCHHHeeeCCE
Confidence 99999999999999999999999999999995
No 11
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=100.00 E-value=2.6e-37 Score=198.20 Aligned_cols=112 Identities=34% Similarity=0.571 Sum_probs=101.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i 81 (114)
|+++|+||++.+++++++|++++++++++++|||++|+||+++++..|+|||+++|++|++|+++|++++++|++++++|
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i 80 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSLLADKI 80 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCEEEEEECC-----CTHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCCCCCcEEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
++.+++.||++++|+||.|.|++++||||||.
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 112 (125)
T 2wkb_A 81 TKILSNHLSVKPRRVYIEFRDCSAQNFAFSGS 112 (125)
T ss_dssp HHHHHHHHCCCGGGEEEEEEC----CEEEEGG
T ss_pred HHHHHHHhCcCcceEEEEEEECCHHHeEECCE
Confidence 99999999999999999999999999999995
No 12
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=100.00 E-value=1.6e-36 Score=191.10 Aligned_cols=109 Identities=26% Similarity=0.508 Sum_probs=107.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH-HHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA-NIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a-~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
|+++|+||++.+++ +++|+++++++++ +++|||++++||+++++..|+|||+++|++|++|+++|++++++|++++++
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~~~~v~~~~~~~~~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~ 79 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSI 79 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHH
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHHHEEEEEeCCceEEECCCCCCEEEEEEEEcCCCCHHHHHHHHHH
Confidence 99999999999998 9999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.++++||++++|+||.|+|++ ||||||.
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~--~wg~~G~ 110 (112)
T 3b64_A 80 VTAAITKECGIVADRIFVLYFSPL--HCGWNGT 110 (112)
T ss_dssp HHHHHHHHHCCCGGGEEEEEECCS--CCEETTE
T ss_pred HHHHHHHHhCcCcceEEEEEEEhh--HeeECCE
Confidence 999999999999999999999998 9999995
No 13
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=99.98 E-value=1.7e-31 Score=172.17 Aligned_cols=112 Identities=11% Similarity=0.175 Sum_probs=106.1
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCcc--EEEEEEeCCceeeecC------CCCCeeEEEEEeeeCCChH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEA--YVMIVLKGSVPMSFGG------TEDPAAYGELVSIGGLNPD 72 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~--~i~v~~~~~~~m~~gg------~~~p~~~v~l~~~~~~~~~ 72 (114)
||+++|++|...+++++++|++++++++++.+|||++ ++++...+..+|.+|| +++|+++++|+ ..+++++
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~~~~~I~i~-~~grt~e 79 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVI-SRPRSEE 79 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEE-ESCCCHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCCccCCcCCCCCeEEEEEE-eCCCCHH
Confidence 9999999999999988999999999999999999999 7788888889999998 77999999999 6679999
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 73 VNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 73 ~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+|++++++|++.+++.||++++|+||.|+|++++||||||.
T Consensus 80 qK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~~~wg~gG~ 120 (131)
T 2aal_A 80 QKVCFYKLLTGALERDCGISPDDVIVALVENSDADWSFGRG 120 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEECBTT
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCE
Confidence 99999999999999999999999999999999999999995
No 14
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=99.96 E-value=7.2e-29 Score=159.27 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=104.1
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCcc--EEEEEEeCCceeeecC-CCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 4 LNISTNVKLDGVDTSSILSEATSTVANIIGKPEA--YVMIVLKGSVPMSFGG-TEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~--~i~v~~~~~~~m~~gg-~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
++|+.....+++++++|++++++++++.+|+|++ +++++..+..+|.+|| +++|+++++|++.+++++++|++++++
T Consensus 2 v~I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~grt~eqK~~l~~~ 81 (128)
T 1mww_A 2 ITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKM 81 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETTCCHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEECCCCCHHHHHHHHHH
Confidence 5777777778888999999999999999999999 8999999999999997 889999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.+.+.||++++++||.|+|++++||||||-
T Consensus 82 l~~~l~~~lg~~~~~v~V~i~e~~~~~wg~gG~ 114 (128)
T 1mww_A 82 LFSELEYKLGIRAHDVEITIKEQPAHCWGFRGM 114 (128)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEECGGGEEETTE
T ss_pred HHHHHHHHhCcChhhEEEEEEECCHHHeeECCE
Confidence 999999999999999999999999999999994
No 15
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=99.92 E-value=7.2e-25 Score=143.78 Aligned_cols=112 Identities=9% Similarity=0.101 Sum_probs=102.4
Q ss_pred eEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCccEEEEEEeC--CceeeecCCCCCe--eEEEEEeeeCCChHHhHHH
Q 033640 3 CLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTEDPA--AYGELVSIGGLNPDVNKKL 77 (114)
Q Consensus 3 ~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~m~~gg~~~p~--~~v~l~~~~~~~~~~~~~~ 77 (114)
+++|+..... +++++++|.+.+++++++.+|+|+++++|.+++ ..+|.+||...+. +++++++++++++++|+++
T Consensus 2 ~~~I~~~~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~~s~~~~~I~i~~~~Grt~eqk~~l 81 (148)
T 3n4h_A 2 TYTCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQSASENHIWVQATIRSGRTEKQKEEL 81 (148)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEECCTTCEEEEEEEESCCCHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEEccCcEEEEEEEEECCCCHHHHHHH
Confidence 5778887776 888899999999999999999999999888874 6889999976554 8999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccccC
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL 114 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~~ 114 (114)
+++|++.+.+.||++++++||.|++++++|||+||.+
T Consensus 82 ~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~ 118 (148)
T 3n4h_A 82 LLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRL 118 (148)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC
T ss_pred HHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEE
Confidence 9999999999999999999999999999999999964
No 16
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=99.90 E-value=3.8e-23 Score=134.05 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=100.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEE--eCCceeeec------CCCCCeeEEEEEeeeCCChHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFG------GTEDPAAYGELVSIGGLNPDV 73 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~--~~~~~m~~g------g~~~p~~~v~l~~~~~~~~~~ 73 (114)
|+++|+.....++++++++.+.+++++++.+|.|++++.+.+ .+..+|.++ +.+++.++++|+...++|.|+
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gRt~Eq 80 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGRTIET 80 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTCCHHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCCCHHH
Confidence 899999999999999999999999999999999999766655 455677555 345889999999998899999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++++++|++.+ +.||+++++++|.+.|++++||||+|-
T Consensus 81 K~~L~~~it~~l-~~lg~~~~~v~V~i~E~~~~~W~~ggG 119 (136)
T 3mlc_A 81 KQRVFAAITESL-APIGVAGSDVFIAITENAPHDWSFGFG 119 (136)
T ss_dssp HHHHHHHHHHHH-TTTTCCGGGEEEEEEEECGGGEECBTT
T ss_pred HHHHHHHHHHHH-HHcCCCcccEEEEEEEcCHHHeeecCc
Confidence 999999999999 999999999999999999999999983
No 17
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=99.87 E-value=7.3e-22 Score=131.17 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=98.6
Q ss_pred CCeEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC-CCeeEEEEEe--eeCCChHHh
Q 033640 1 MPCLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE-DPAAYGELVS--IGGLNPDVN 74 (114)
Q Consensus 1 MP~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~-~p~~~v~l~~--~~~~~~~~~ 74 (114)
||+++|+..... ++++++++.+.+++++++. |+|..++.|.+. +..++..||.. +..++++|.. ..+++.++|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~~~~~v~I~I~~~a~~gRt~eqK 100 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQHPNFVALTIYHLARTMTSDEQR 100 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEECSSEEEEEEEEETTSCCSHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcccCCEEEEEEEeccCCCCCHHHH
Confidence 999999987774 8888999999999999999 999998777664 45788888854 5666666633 577999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
++++++|++.+++.+|+++++++|.+.+.+++||||+|.
T Consensus 101 ~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~e~Wsf~G~ 139 (161)
T 3c6v_A 101 QGFLKRIDAFLTPMFEPKGIDWEYFVTEAPRDLWKINGL 139 (161)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEEEECGGGCEETTB
T ss_pred HHHHHHHHHHHHHHcCCChhhEEEEEEEcCccceEECCC
Confidence 999999999999999999999999999999999999996
No 18
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=99.76 E-value=4.4e-18 Score=111.65 Aligned_cols=111 Identities=10% Similarity=0.147 Sum_probs=97.6
Q ss_pred EEEEeC-CCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC--CCeeEEEEEeeeCCChHHhHHHH
Q 033640 4 LNISTN-VKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE--DPAAYGELVSIGGLNPDVNKKLS 78 (114)
Q Consensus 4 i~i~tn-~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~--~p~~~v~l~~~~~~~~~~~~~~~ 78 (114)
-+|+.. -..+++++++|.+++++++++.+|.|++++.|.+. +..+++.||.. +...|++++...|++.++|++++
T Consensus 3 ~~i~~~~~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L~ 82 (149)
T 3mf7_A 3 YMVYVSQDRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQLA 82 (149)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHHH
Confidence 345444 35777889999999999999999999998888775 45778888743 67789999988899999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccccC
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL 114 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~~ 114 (114)
++|++.+.+.+|+++++++|.+.++++.+|+.+|.+
T Consensus 83 ~~I~~~l~~~~g~~~edV~V~i~e~~~~~~~~~G~~ 118 (149)
T 3mf7_A 83 QRIVDDVSVAAEIDRKHIWVYFGEMPAQQMVEYGRF 118 (149)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEEECGGGCCCSSCC
T ss_pred HHHHHHHHHHcCCChhhEEEEEEEcCHHHHHhcCee
Confidence 999999999999999999999999999999999964
No 19
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=99.74 E-value=2.4e-17 Score=104.44 Aligned_cols=105 Identities=10% Similarity=0.150 Sum_probs=93.6
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~ 80 (114)
||+|++ ...+.++.+.+.+.|.+-++++++-|.+++++.+.+. ..++.| +..-+|+|... ++++|++++++++
T Consensus 16 MPhlr~---rgi~~e~v~~lS~~Lid~La~i~~~~~e~fTle~i~s-~~i~~G--~~MP~VeV~~f-gRt~EqK~~la~~ 88 (122)
T 1u9d_A 16 MPHLRF---RAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINT-QYFAEG--GVYPMVEVLWF-GREQQTQDQIAQV 88 (122)
T ss_dssp CCEEEE---ESSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCC-CCCCTT--CCCCEEEEEES-CCCHHHHHHHHHH
T ss_pred CceEEE---CCCCHHHHHHHhHHHHHHHHHHHCCCcccEEEEEeee-EEEecC--CCCCEEEEEEc-CCCHHHHHHHHHH
Confidence 999999 4555566789999999999999999999999999874 566777 54558999999 5999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++.+.+. |.++++|.|.|+++++++|+.||-
T Consensus 89 IT~av~~~-~~~~e~V~Vif~el~~~~y~~gG~ 120 (122)
T 1u9d_A 89 ITDQIRQL-LGADSHLAVVFIPLQRTAYYLDGQ 120 (122)
T ss_dssp HHHHHHHH-HCTTCCCEEEEEECCGGGCEETTE
T ss_pred HHHHHHHh-CCCCceEEEEEEecCHHHeeeCCE
Confidence 99999999 899999999999999999999995
No 20
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=99.65 E-value=2.5e-16 Score=88.22 Aligned_cols=54 Identities=7% Similarity=0.230 Sum_probs=52.1
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++|+..+++++++|++++++|++.+.+.||++++++||.|++++++|||++|-
T Consensus 2 ~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~ 55 (61)
T 2opa_A 2 YVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGK 55 (61)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCE
Confidence 688999999999999999999999999999999999999999999999999994
No 21
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=99.63 E-value=5.3e-16 Score=87.11 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=52.0
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++|+..+++++++|++++++|++.+.+.||+|++++||.|++++++|||++|-
T Consensus 2 ~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~ 55 (62)
T 1otf_A 2 IAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGE 55 (62)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCE
Confidence 688998899999999999999999999999999999999999999999999984
No 22
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=99.60 E-value=1.8e-15 Score=85.49 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=52.5
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
-+++|++.+++++++|++++++|++.+.+.||+|+++++|.|+|++++||||+|-
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~ 56 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGV 56 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCE
Confidence 3789998889999999999999999999999999999999999999999999994
No 23
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=99.58 E-value=4.6e-15 Score=84.83 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=51.8
Q ss_pred EEEEEeee---CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIG---GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~---~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
|++|+..+ ++++++|+++++++++.+.+.||+|+++++|.|++++++|||++|-
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~ 58 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGE 58 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTE
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCE
Confidence 68898887 8999999999999999999999999999999999999999999995
No 24
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=99.58 E-value=3.8e-15 Score=84.04 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=50.7
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++|+. +++++++|+++++++++.+.+.||+++++++|.|++++++|||++|-
T Consensus 2 ~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~ 54 (62)
T 3m20_A 2 VLIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGK 54 (62)
T ss_dssp EEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTE
T ss_pred EEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCE
Confidence 678888 88999999999999999999999999999999999999999999995
No 25
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=99.55 E-value=9.5e-15 Score=83.02 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=51.8
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++|+...|+++++|++++++|++.+.+.||+|+++++|.|++++++|||++|-
T Consensus 2 ~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~ 55 (65)
T 3ry0_A 2 LIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGR 55 (65)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCE
Confidence 688888888999999999999999999999999999999999999999999995
No 26
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=99.53 E-value=1.7e-14 Score=83.56 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=51.8
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++|+...+++.++|++++++|++.+.+.||+|++++||.|++++++||||+|-
T Consensus 3 ~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~ 56 (72)
T 3mb2_A 3 LLRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGI 56 (72)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCE
Confidence 688888888999999999999999999999999999999999999999999994
No 27
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=99.52 E-value=2.4e-14 Score=80.23 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=52.7
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
-+++|+..+++++++++++++++++.+.+.||+|+++++|.|+++++++||++|-
T Consensus 4 P~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~ 58 (63)
T 2x4k_A 4 PIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGV 58 (63)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCE
Confidence 4789999999999999999999999999999999999999999999999999994
No 28
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=99.51 E-value=2.3e-14 Score=84.00 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=51.9
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+++|+...|+|++++++++++|++.+.+.||+|+++++|.|++++++|||++|-
T Consensus 3 ~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~ 56 (76)
T 3ej9_A 3 MISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGE 56 (76)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCE
Confidence 688888888999999999999999999999999999999999999999999994
No 29
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=99.46 E-value=1.2e-12 Score=85.47 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=96.0
Q ss_pred CCeEEEEeCCCCC-CcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC--CCeeEEEEEeeeCCChHHhHHH
Q 033640 1 MPCLNISTNVKLD-GVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE--DPAAYGELVSIGGLNPDVNKKL 77 (114)
Q Consensus 1 MP~i~i~tn~~~~-~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~--~p~~~v~l~~~~~~~~~~~~~~ 77 (114)
||.+.|.-+.... ..+.++|++.+.+++.+...-|+..|-+...+...+..|+.. +..++|+|+...|+|.|+|+++
T Consensus 22 MPHi~IEYS~nl~~~~d~~~l~~~vh~al~~~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L 101 (146)
T 3e6q_A 22 MPHLVIEATANLRLETSPGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQAL 101 (146)
T ss_dssp CCEEEEEEETTCEESSCHHHHHHHHHHHHHHTTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHH
T ss_pred CCeEEEEECCCcccccCHHHHHHHHHHHHHhcCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHH
Confidence 9999998777765 567889999999999998777888888888777788888543 5677777788899999999999
Q ss_pred HHHHHHHHHhhcCCCC---CcEEEEEEeCCCCCcccc
Q 033640 78 SAAISAILEKKLSVPK---SRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~---~ri~I~f~~~~~~~~g~~ 111 (114)
+++|++.+.+.|+-++ ..+.|.+.|+++++|..+
T Consensus 102 ~e~v~~al~~~l~~~~~~~~~lsVeI~E~~~~~y~k~ 138 (146)
T 3e6q_A 102 GESLCEVLAGAVAGGGEEGVQVSVEVREMERASYAKR 138 (146)
T ss_dssp HHHHHHHHHHHEEECSSSCEEEEEEEEEECGGGCEEE
T ss_pred HHHHHHHHHHHhCCccCCceEEEEEEEECCcccccee
Confidence 9999999999999876 599999999999999865
No 30
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=99.37 E-value=4.8e-12 Score=80.57 Aligned_cols=110 Identities=9% Similarity=0.069 Sum_probs=93.3
Q ss_pred CeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC-C-CeeEEEEEeeeCCChHHhHHHH
Q 033640 2 PCLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE-D-PAAYGELVSIGGLNPDVNKKLS 78 (114)
Q Consensus 2 P~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~-~-p~~~v~l~~~~~~~~~~~~~~~ 78 (114)
|.+.|.-+....+ .+..+|++.+.+++.+...-|+..+-+...+...+..|+.. + ...+++|+...|+|.|+|++++
T Consensus 1 PH~~ieyS~nl~~~~~~~~L~~~lh~~l~~~~~fp~~~ik~Ra~~~~~~~vg~~~~~~~fvhi~i~i~~GRs~eqK~~L~ 80 (125)
T 1otg_A 1 PHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAG 80 (125)
T ss_dssp CEEEEEEEGGGHHHHTHHHHHHHHHHHHHTTSSSCGGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHH
T ss_pred CeEEEEeCCCcccccCHHHHHHHHHHHHHHcCCCCCcCceEeeEEcccEEEcCCCCCcceEEEEEEECCCCCHHHHHHHH
Confidence 6777766666643 56899999999999999989999888888776778878433 3 4677788888899999999999
Q ss_pred HHHHHHHHhhc----CCCCCcEEEEEEeCCCC-Ccccc
Q 033640 79 AAISAILEKKL----SVPKSRFFIKFYDTKAS-HFNFL 111 (114)
Q Consensus 79 ~~i~~~l~~~L----gi~~~ri~I~f~~~~~~-~~g~~ 111 (114)
+++++.+.+.| |.++..+.|.+.|++++ +|+.+
T Consensus 81 ~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~~~~~~~ 118 (125)
T 1otg_A 81 EMLFELIKTHFAALMESRLLALSFEIEELHPTLNFKQN 118 (125)
T ss_dssp HHHHHHHHHHTHHHHTTSEEEEEEEEEECCSSSEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCceEEEEEEEEcCCccCHHHh
Confidence 99999999998 66999999999999999 99875
No 31
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=99.36 E-value=1.1e-12 Score=76.59 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=48.3
Q ss_pred EEEEEeeeCC-ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccc
Q 033640 60 YGELVSIGGL-NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110 (114)
Q Consensus 60 ~v~l~~~~~~-~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~ 110 (114)
+++|+...|+ ++++|+++++++++.+.+.||++++++||.|++++++|||+
T Consensus 2 ~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~ 53 (76)
T 1gyx_A 2 HIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA 53 (76)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE
Confidence 6788877777 99999999999999999999999999999999999999997
No 32
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=99.30 E-value=2.6e-12 Score=72.24 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
||+|+|+++...+++++++|.+++++++++.+|+|+++++|.+.+. .++.|||..
T Consensus 1 MP~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 57 (64)
T 3abf_A 1 MVVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVL 57 (64)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 9999999999999988999999999999999999999999999865 459999864
No 33
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=99.30 E-value=6.3e-12 Score=70.93 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=52.5
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccccC
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL 114 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~~ 114 (114)
++++..+-|++.|+|+++.+++++...+.||.|++.|.|.++|++.+|||.+|.+
T Consensus 2 i~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~~ 56 (70)
T 3ej9_B 2 FIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGRI 56 (70)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTCC
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeeeE
Confidence 5788999999999999999999999999999999999999999999999999963
No 34
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=99.17 E-value=3.7e-11 Score=66.96 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeC--CceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~m~~gg~~ 55 (114)
||+++|+++...+++++++|.+.+++++++.+|+|+++++|.+++ ..++.+||..
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~ 59 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVR 59 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 999999999999888899999999999999999999999998864 4688888854
No 35
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=99.09 E-value=1.6e-10 Score=66.65 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeC--CceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~m~~gg~~ 55 (114)
||+|+|++....+++++++|.+.+++++++.+|+|++.++|.+++ ..++.+||..
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 57 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGIS 57 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 999999999999999999999999999999999999998888874 5789999864
No 36
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=98.93 E-value=1.5e-09 Score=63.27 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
||+|+|+.....+.+++++|.+.+++++++.+|+|++.+.|.++ +..++.+||..
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~~ 57 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGEH 57 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 99999999888899999999999999999999999997777775 55789999854
No 37
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=98.73 E-value=1.8e-08 Score=65.38 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=49.6
Q ss_pred EEEEEeeeCC-ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 60 YGELVSIGGL-NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 60 ~v~l~~~~~~-~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
..+|+...|+ +++++++++++|++.+.+.+|+|+++++|.|+++++++|+++|-
T Consensus 2 ~~~I~~~~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~ 56 (148)
T 3n4h_A 2 TYTCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQ 56 (148)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTE
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCE
Confidence 4677777665 99999999999999999999999999999999999999999983
No 38
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=98.73 E-value=4e-08 Score=62.47 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=50.1
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
++.|....++++++++++.+++++.+.+.+|.|++++|+.|+++++++|+++|
T Consensus 3 ~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g 55 (131)
T 2aal_A 3 LLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLED 55 (131)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCC
Confidence 57777777899999999999999999999999999999999999999999998
No 39
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=98.72 E-value=2.2e-08 Score=55.93 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=48.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
|+|+|+. ...+.+++++|.+.+++++++.+|+|.+.++|.+++. .++.+||..
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~ 55 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKL 55 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEE
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEE
Confidence 8999999 8899999999999999999999999999999988754 689999854
No 40
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=98.65 E-value=5.2e-08 Score=55.08 Aligned_cols=54 Identities=15% Similarity=0.348 Sum_probs=48.1
Q ss_pred CeEEEEeCC---CCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 2 PCLNISTNV---KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~---~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
|+++|+... ..+.+++++|.+.+++++++.+|+|.+.++|.++ +..++.+||..
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 59 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES 59 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 999999998 8999999999999999999999999998888886 44789999853
No 41
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=98.65 E-value=4.6e-08 Score=62.84 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=48.7
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~ 111 (114)
+++|....|+|+++++++++++++.+.+.+|+|++++++.|+++++++|.++
T Consensus 2 ~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~ 53 (136)
T 3mlc_A 2 LIRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAE 53 (136)
T ss_dssp EEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEEC
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHcccc
Confidence 5788888889999999999999999999999999999999999999999655
No 42
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=98.64 E-value=1e-07 Score=53.87 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=42.2
Q ss_pred EEEEEeee--CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCC
Q 033640 60 YGELVSIG--GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASH 107 (114)
Q Consensus 60 ~v~l~~~~--~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~ 107 (114)
++++...| .+++|+|+++++++++.+.+.||-+|++++|.|++++++|
T Consensus 2 ~lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV~~en 51 (72)
T 3mb2_B 2 MLEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIVSPEN 51 (72)
T ss_dssp EEEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEECCGGG
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCccc
Confidence 34555444 4899999999999999999999999999999999999876
No 43
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=98.63 E-value=5.1e-08 Score=54.78 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=48.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
|+++|+.....+.+++++|.+.+++++++.+|+|++.+.|.+. +..++.+||..
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 56 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRS 56 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 8999999988999999999999999999999999998777775 45789999854
No 44
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=98.58 E-value=8.5e-08 Score=52.89 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=47.4
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
|+++|+.....+.+++++|.+.+++++++.+|+|.+.+.|.+. +..++.+||..
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 56 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGKR 56 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEE
Confidence 8999998888888889999999999999999999998888886 44688888853
No 45
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=98.56 E-value=1.7e-07 Score=61.90 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=51.4
Q ss_pred CeeEEEEEeeeCC-ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 57 PAAYGELVSIGGL-NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 57 p~~~v~l~~~~~~-~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
..-+++|....++ +++++++++++|++.+.+. |+|++.+.|.|+++++++|+.+|-
T Consensus 21 ~MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~ 77 (161)
T 3c6v_A 21 GMPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGE 77 (161)
T ss_dssp SCCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCc
Confidence 4668899887775 9999999999999999999 999999999999999999999883
No 46
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=98.55 E-value=1.2e-07 Score=61.80 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=46.8
Q ss_pred EEEe-eeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 62 ELVS-IGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 62 ~l~~-~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
+|.. -|.++++++++++++|++.+.+.+|+|+++++|.|+++++.+|+.+|-
T Consensus 4 ~i~~~~~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~ 56 (149)
T 3mf7_A 4 MVYVSQDRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGV 56 (149)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCE
Confidence 4433 367999999999999999999999999999999999999999998773
No 47
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=98.53 E-value=1.5e-07 Score=51.92 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=47.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~~ 55 (114)
|+++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+. +..++.+||..
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~ 56 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEP 56 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEE
Confidence 8999998778888889999999999999999999998888775 44688888854
No 48
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=98.45 E-value=8.4e-08 Score=60.71 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=48.8
Q ss_pred EEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 61 v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+.|....++++++++++.+++++.+.+.+|.|++++|+.++++++++|.++|
T Consensus 2 v~I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg 53 (128)
T 1mww_A 2 ITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPF 53 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCC
Confidence 5677777799999999999999999999999999999999999999999997
No 49
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=98.11 E-value=5.5e-06 Score=52.12 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=43.2
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
||+++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. .++.+||..
T Consensus 57 ~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (125)
T 2wkb_A 57 YCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSAQNFAFSGSL 113 (125)
T ss_dssp CEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC----CEEEEGGG
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeEECCEE
Confidence 6889999776678888999999999999999999999999999764 478888754
No 50
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=98.08 E-value=1.3e-05 Score=45.16 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=47.9
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEE--eCCceeeecCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFGGTE 55 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~--~~~~~m~~gg~~ 55 (114)
|+++++.--..+++++++|.+++++++++.+|-|.+.|.|.+ .+..+|..||.-
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~~ 56 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGRI 56 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTCC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeeeE
Confidence 899999999999999999999999999999999999655555 567889888865
No 51
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=98.02 E-value=1.1e-05 Score=49.74 Aligned_cols=54 Identities=11% Similarity=0.248 Sum_probs=46.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~ 54 (114)
|.+++|+.....+.++++++.+.+++++++.+|.|.+.+.|.+.+..++.+||+
T Consensus 57 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~wg~~G~ 110 (112)
T 3b64_A 57 VACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 110 (112)
T ss_dssp CEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEhhHeeECCE
Confidence 467888876667888899999999999999999999999999987667777774
No 52
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=98.02 E-value=7e-06 Score=47.31 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=40.9
Q ss_pred CeEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC
Q 033640 2 PCLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS 46 (114)
Q Consensus 2 P~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~ 46 (114)
|+|+|+..... +.+++++|.+.+++++++.+|+|.+.+.|.+.+.
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~ 46 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQI 46 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEe
Confidence 89999988776 8888999999999999999999999988888754
No 53
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=97.97 E-value=1e-05 Score=49.83 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGT 54 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~ 54 (114)
|++++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. .++.+||.
T Consensus 56 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 111 (113)
T 1hfo_A 56 AAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGT 111 (113)
T ss_dssp CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeeeCCE
Confidence 5688888877778888999999999999999999999999998754 48888885
No 54
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=97.91 E-value=2e-05 Score=48.65 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=46.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
+.+++|+..-..+.+++++|.+.+++++++.+|.|.+.+.|.+.+. .++.+||.+
T Consensus 57 ~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t 113 (115)
T 2xcz_A 57 TCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGFEDVPARLWGWNGST 113 (115)
T ss_dssp CEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEE
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHeeeCCEE
Confidence 4578888766678888999999999999999999999999988754 488888753
No 55
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=97.88 E-value=1.8e-05 Score=48.84 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
+.+++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. .++.+||.+
T Consensus 57 ~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t 113 (115)
T 1uiz_A 57 CAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGST 113 (115)
T ss_dssp CEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeeCCEE
Confidence 4578888777678888999999999999999999999999998754 488888853
No 56
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=97.86 E-value=1.9e-05 Score=49.76 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe--CCceeeecCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGT 54 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~m~~gg~ 54 (114)
||+++|.-- ..++++++++.+.+++++++. +.|.+.|.|.+. +..++..||.
T Consensus 67 MP~VeV~~f-gRt~EqK~~la~~IT~av~~~-~~~~e~V~Vif~el~~~~y~~gG~ 120 (122)
T 1u9d_A 67 YPMVEVLWF-GREQQTQDQIAQVITDQIRQL-LGADSHLAVVFIPLQRTAYYLDGQ 120 (122)
T ss_dssp CCEEEEEES-CCCHHHHHHHHHHHHHHHHHH-HCTTCCCEEEEEECCGGGCEETTE
T ss_pred CCEEEEEEc-CCCHHHHHHHHHHHHHHHHHh-CCCCceEEEEEEecCHHHeeeCCE
Confidence 999999999 789999999999999999999 788787777775 4467777763
No 57
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=97.80 E-value=3.8e-05 Score=47.75 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=46.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
+++++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. .++.+||..
T Consensus 57 ~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (119)
T 2os5_A 57 VAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTT 113 (119)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHeeECCEE
Confidence 4578888777788888999999999999999999999999998754 488888753
No 58
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=97.40 E-value=0.00034 Score=44.57 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=33.9
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~~ 55 (114)
+++|+..-..+.++++++.+.+++.+.+.+|.|.+++.|.+.+- ..+-++|++
T Consensus 80 ~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~T 134 (135)
T 3t5s_A 80 FVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYISFNEAKGHNWGFNGST 134 (135)
T ss_dssp EEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC------------
T ss_pred EEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEEeccccCcccccCCCc
Confidence 45677666677788899999999999999999999999999865 677777753
No 59
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=97.33 E-value=0.00048 Score=43.76 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=44.5
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~ 54 (114)
+++|+..-..+.++.+++.+.+++.+.+.+|.|.+++.|.+.+-..+-++|+
T Consensus 80 ~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d~~~wG~nG~ 131 (133)
T 3fwu_A 80 CVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 131 (133)
T ss_dssp EEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEHHHEeeCcE
Confidence 4567766667777789999999999999999999999999998778877775
No 60
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=97.20 E-value=0.00035 Score=43.00 Aligned_cols=52 Identities=8% Similarity=0.218 Sum_probs=43.1
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGT 54 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~ 54 (114)
+++|+.--..+.++++++.+.+++++.+.+|+|.+++.|.+.+- .++-++|+
T Consensus 59 ~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~ 112 (114)
T 4dh4_A 59 FIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTTFTNKSPSEWAMGDR 112 (114)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGCEETTE
T ss_pred EEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEeCCHHHeEECCE
Confidence 56676666677777899999999999999999999999998754 67777775
No 61
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=96.98 E-value=0.0033 Score=39.78 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=49.2
Q ss_pred CCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640 55 EDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC 113 (114)
Q Consensus 55 ~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~ 113 (114)
..|.-+++|+...+.+.++++++.+.+++.+.+.+|.|.+.+.|.+++ ...|-|+|.
T Consensus 18 ~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~--~~~m~fgGs 74 (133)
T 3fwt_A 18 GSHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSD--KTPISFQGS 74 (133)
T ss_dssp CEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEEC--SCCCCBTTB
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEEC--CceEEECCC
Confidence 356778999887789988889999999999999999999999998886 467888773
No 62
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=96.91 E-value=0.0015 Score=40.14 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=42.5
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGT 54 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~ 54 (114)
+++|+.--..+.++.+++.+.+++++.+.+|.|.+++.|.+.+- .++-++|+
T Consensus 58 ~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~ 111 (114)
T 3djh_A 58 LCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNS 111 (114)
T ss_dssp EEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeECCE
Confidence 45666655566667889999999999999999999999999865 67777775
No 63
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=96.68 E-value=0.0035 Score=35.35 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=34.9
Q ss_pred CeEEEEeCC--CCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEe
Q 033640 2 PCLNISTNV--KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK 44 (114)
Q Consensus 2 P~i~i~tn~--~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~ 44 (114)
|++++-... +.+.+++.+|.+++++.+++++|.|..++-|.+.
T Consensus 1 p~lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~ 45 (72)
T 3mb2_B 1 PMLEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQ 45 (72)
T ss_dssp CEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEE
T ss_pred CceEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 677776644 4666889999999999999999999997766664
No 64
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=95.84 E-value=0.0054 Score=38.37 Aligned_cols=45 Identities=0% Similarity=-0.133 Sum_probs=40.1
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHh----CCCccEEEEEEeC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANII----GKPEAYVMIVLKG 45 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~----~kp~~~i~v~~~~ 45 (114)
||.++|+.....+.++++++.+.+.+++++.+ +.+...+.|.+.+
T Consensus 60 fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E 108 (125)
T 1otg_A 60 FVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEE 108 (125)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEE
Confidence 78999999999999999999999999999987 5588888888874
No 65
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=95.52 E-value=0.024 Score=34.86 Aligned_cols=52 Identities=15% Similarity=0.023 Sum_probs=37.9
Q ss_pred eEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCccEEEEEEeCC--ceeeecCC
Q 033640 3 CLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGT 54 (114)
Q Consensus 3 ~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~m~~gg~ 54 (114)
+++|+.--..+. ++.+++.+.+++++.+.+|.|.+++.|.+.+- ..+-++|+
T Consensus 58 ~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~~~~~~G~nG~ 112 (117)
T 3kan_A 58 QLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGT 112 (117)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCEETTE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeeCCE
Confidence 345555444434 34789999999999999999999999999754 44455564
No 66
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=91.25 E-value=0.95 Score=29.63 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCC-ChHHhHHHHHHHHHHHHhhc-CCCCCcEEEE
Q 033640 22 SEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGL-NPDVNKKLSAAISAILEKKL-SVPKSRFFIK 99 (114)
Q Consensus 22 ~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~-~~~~~~~~~~~i~~~l~~~L-gi~~~ri~I~ 99 (114)
.+|.+.+..+-|.-..++.+.+-.....+......|.|-|-|+..++. +++ ...+|..++..-. |+++++|.|.
T Consensus 91 ~ELartI~~i~gV~~ArVhl~lP~~~~~f~~~~~~~sASV~l~~~~g~l~~~----qv~~I~~LVa~SV~gL~~e~VtVv 166 (170)
T 2y9j_Y 91 QRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPLAH----QISDIKRFLKNSFADVDYDNISVV 166 (170)
T ss_dssp HHHHHHHTTSTTEEEEEEEEEECCCCCBTTBCCCCEEEEEEEEECTTCCCGG----GHHHHHHHHHHHSTTCCGGGEEEE
T ss_pred HHHHHHHHcCCCeeEEEEEEEcCCCcCcccccCCCCcEEEEEEECCCCCCHH----HHHHHHHHHHHhcCCCCccceEEE
Confidence 344444444545555566666654323333334578888888876653 333 4556666666665 8999999998
Q ss_pred EEe
Q 033640 100 FYD 102 (114)
Q Consensus 100 f~~ 102 (114)
+.+
T Consensus 167 ~~~ 169 (170)
T 2y9j_Y 167 LSE 169 (170)
T ss_dssp EEE
T ss_pred Eec
Confidence 865
No 67
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=88.28 E-value=1.7 Score=26.44 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=34.5
Q ss_pred EEEEEEeCCce-eeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 38 YVMIVLKGSVP-MSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 38 ~i~v~~~~~~~-m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+.|.+.|+.. -.+.|..+...-+.|+.. -..-+-.++++++|.+.|||++.+|.|.
T Consensus 16 ~l~v~V~P~A~r~~I~g~~~~~LkV~v~Ap-----P~dGkAN~ali~~LAk~l~V~ks~V~Iv 73 (108)
T 1n91_A 16 VLRLYIQPKASRDSIVGLHGDEVKVAITAP-----PVDGQANSHLVKFLGKQFRVAKSQVVIE 73 (108)
T ss_dssp EEEEEEECSSSSCEEEEECSSCEEEECCCC-----SSHHHHHHHHHHHHHHHTCCCTTTEEES
T ss_pred EEEEEEeeCCCcceeecccCCEEEEEEecC-----CCCChHHHHHHHHHHHHhCCccceEEEE
Confidence 45666667632 233344444433444332 2234455678889999999999999874
No 68
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=86.44 E-value=0.78 Score=29.32 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=35.2
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCc---cEEEEEEeC
Q 033640 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPE---AYVMIVLKG 45 (114)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~---~~i~v~~~~ 45 (114)
.++|+.-...+.++++++.+.+.+++++.++.+. ..+.|.+.+
T Consensus 84 hV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~E 129 (146)
T 3e6q_A 84 HACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVRE 129 (146)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEEE
Confidence 3566778889999999999999999999999765 367777764
No 69
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=82.00 E-value=8.3 Score=25.07 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHHHhhc
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l~~~L 89 (114)
...|++.+.+.+.+.+|.+.+-+- .......-.+.-|++++|+-.+.. .+++..++++++|.+-+.+-+
T Consensus 101 s~~lA~~i~~~l~~~~g~~~rgvk----~~~~~vLr~t~~PavLvE~gFisN~~d~~~l~~~~~~~~~A~ai~~gI~~y~ 176 (179)
T 1jwq_A 101 SKAFANVMHKYFAPATGLTDRGIR----YGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYL 176 (179)
T ss_dssp GHHHHHHHHHHHHHHHCSCEEEEE----ECCCHHHHSCSSCEEEEEEEETTSHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcc----cCcchhccCCCCCEEEEEecCCCCHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999988886655432 222223335778999999976643 245666889999999988877
Q ss_pred CC
Q 033640 90 SV 91 (114)
Q Consensus 90 gi 91 (114)
+.
T Consensus 177 ~~ 178 (179)
T 1jwq_A 177 DV 178 (179)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 70
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=79.87 E-value=2.9 Score=24.45 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=31.6
Q ss_pred CCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 54 TEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 54 ~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
...+.+++.+......+.+..+++.+.+.+.+.+.+|+++.
T Consensus 43 ~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~ 83 (109)
T 3lax_A 43 NDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR 83 (109)
T ss_dssp EEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred ceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccc
Confidence 34566777776544456777788999999999999999873
No 71
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=75.52 E-value=2.9 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++-.+---+++.+.||+|++|+||++.+-
T Consensus 104 K~eAI~~AwE~LT~~lgl~~~rL~vTv~~~ 133 (465)
T 1yfs_A 104 KKEAIEYAWEFVTEVLKLPKEKLYVSVYKD 133 (465)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGEEEEEETT
T ss_pred HHHHHHHHHHHHHhhcCCCHHHeEEEEeCC
Confidence 445555567788888999999999999864
No 72
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=73.24 E-value=6.3 Score=22.70 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=29.7
Q ss_pred EEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCc
Q 033640 62 ELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHF 108 (114)
Q Consensus 62 ~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~ 108 (114)
.|+...+++-.+ +.+.+.+.|+++++.+-++|.+-+...|
T Consensus 17 airvp~~~~y~~-------L~~~l~~kL~l~~~~~~LsYk~~~s~~~ 56 (83)
T 1oey_A 17 VMKTQPGLPYSQ-------VRDMVSKKLELRLEHTKLSYRPRDSNEL 56 (83)
T ss_dssp EEEECTTCCHHH-------HHHHHHHHTTCCGGGCCEEECCTTCSSC
T ss_pred EEECCCCCCHHH-------HHHHHHHHhCCCcceeEEEeeCCCCCCe
Confidence 344444555444 7888999999999999999999765554
No 73
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=67.42 E-value=12 Score=26.71 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCC--------hHHhHHHHHHHHHHHHhh
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLN--------PDVNKKLSAAISAILEKK 88 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~--------~~~~~~~~~~i~~~l~~~ 88 (114)
-......+.+.+|+.||.|.+.|.|..-+-.. .|... -+.++++ ....+++-+.|.+.-.+.
T Consensus 46 GQG~~T~laQIaAe~Lgi~~e~V~v~~~DT~~-------~p~~~---~T~gSrst~~~g~Av~~Aa~~lr~~L~~~AA~~ 115 (330)
T 3hrd_B 46 GQGSGTAMAQIAAEELGLDYEKIHVTWGDTMV-------TPDGG---ATSASRQTLITGNAVILACRQAKETLAKTAAEK 115 (330)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEEESBTTT-------SCCCC---CSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEEecCCCC-------CCCCC---CCcchHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999987754221 12110 1123332 233444555555666667
Q ss_pred cCCCCCcE
Q 033640 89 LSVPKSRF 96 (114)
Q Consensus 89 Lgi~~~ri 96 (114)
|+++++++
T Consensus 116 ~~~~~~~l 123 (330)
T 3hrd_B 116 LDCAPEEL 123 (330)
T ss_dssp SCCSSSCC
T ss_pred hCCCHHHE
Confidence 88888765
No 74
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=67.06 E-value=6.7 Score=28.41 Aligned_cols=33 Identities=9% Similarity=0.311 Sum_probs=28.4
Q ss_pred eCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..+++++-.+..+.+.+.+++.+||+.-||-|.
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~ 210 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVC 210 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 457899999999999999999999988887765
No 75
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=64.43 E-value=19 Score=20.95 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCC--ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGL--NPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 23 ~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~--~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
++-+.+.+..+..+.++.. +... ++.+...+++++ -+.. ..+...++.+.+.+.+.+.+|+++ .|.|
T Consensus 18 eIE~~l~~~p~v~~~~~v~-v~~~-----~~~e~l~~~ve~--~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~---~v~~ 86 (109)
T 3gxs_A 18 QIETILLQFKELGSDYLIT-LETA-----ESNDEMTVEVEL--SQLFTDDYGRLQALTREITRQLKDEILVTP---RVKL 86 (109)
T ss_dssp HHHHHHHTCTTEEEEEEEE-EEEE-----TTEEEEEEEEEE--CTTCCCCHHHHHHHHHHHHHHHHHHHSSCC---EEEE
T ss_pred HHHHHHHhCCCcCCcEEEE-EEcC-----CCceEEEEEEEE--cCccccchhHHHHHHHHHHHHHHHhhCCce---EEEE
Confidence 4555566655554444332 2211 234567777777 2322 134567888999999999999987 4555
Q ss_pred Ee
Q 033640 101 YD 102 (114)
Q Consensus 101 ~~ 102 (114)
.+
T Consensus 87 v~ 88 (109)
T 3gxs_A 87 VP 88 (109)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 76
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=63.12 E-value=8.6 Score=27.55 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCC--CCCccccc
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYDTK--ASHFNFLV 112 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~~~--~~~~g~~g 112 (114)
...++....++||++.++|.|..-|-+ |..+|..|
T Consensus 50 ~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~~T~g 86 (330)
T 3hrd_B 50 GTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSA 86 (330)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCT
T ss_pred HHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcc
Confidence 345778888999999999999998765 33444443
No 77
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=62.77 E-value=7.4 Score=25.21 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 77 LSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+..++.+.+.+.||++.++|.|.-+-. +..||-|
T Consensus 110 ~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 143 (159)
T 1t0a_A 110 HIEDMRQVLAADLNADVADINVKATTT--EKLGFTG 143 (159)
T ss_dssp GHHHHHHHHHHHTTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEecC--CCCCccc
Confidence 446688888899999999999998876 5666654
No 78
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=62.52 E-value=29 Score=22.49 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhc-CCCCCcEEEEEE
Q 033640 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRFFIKFY 101 (114)
Q Consensus 23 ~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~L-gi~~~ri~I~f~ 101 (114)
+|.+.+..+-|.-..++.+.+-. .....|.|-|-|+...+.+.+.. + . +|..++.... |+++++|.|..+
T Consensus 94 ELartI~~i~~V~~ARVhl~lP~------~~~~~~sASV~l~~~~g~~l~~~-q-~-~I~~LVa~SV~gL~~enVtVvdq 164 (171)
T 1yj7_A 94 DIERLLSKIPGVIDCSVSLNVNN------NESQPSSAAVLVISSPEVNLAPS-V-I-QIKNLVKNSVDDLKLENISVVIK 164 (171)
T ss_dssp HHHHHHTTSTTEEEEEEEEEC-------------CEEEEEEEECTTCCCGGG-H-H-HHHHHHHHHSTTCCGGGEEEEEE
T ss_pred HHHHHHHcCCCeeEEEEEEECCC------CCCCCceEEEEEEeCCCCCCcHh-H-H-HHHHHHHHhcCCCCcccEEEEeC
Confidence 34444444445444455554433 12446888888877666544433 2 2 4888887776 899999999888
Q ss_pred eCCCC
Q 033640 102 DTKAS 106 (114)
Q Consensus 102 ~~~~~ 106 (114)
+-.+.
T Consensus 165 ~~~~~ 169 (171)
T 1yj7_A 165 SSSGQ 169 (171)
T ss_dssp ECC--
T ss_pred CCCCC
Confidence 76543
No 79
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=62.48 E-value=9.5 Score=23.90 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=24.3
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+..++..| ++++.+.+.-+.+.++. +.+|++.++|..
T Consensus 112 ~~~~~Lyg-R~~~~s~e~~e~F~~~~-~~~Gl~~enI~~ 148 (157)
T 3fiq_A 112 TNVILVAG-KREDLNKAQKQELRKLA-EEYNIPNENTQH 148 (157)
T ss_dssp EEEEEEEE-SSSCCCHHHHHHHHHHH-HHTTCCGGGCEE
T ss_pred EEEEEEEc-CCCCCCHHHHHHHHHHH-HHcCCCHHHEEe
Confidence 44445455 66666666655555555 788999999875
No 80
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=62.42 E-value=11 Score=21.92 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC------CChHHhHHHHHHHHHHHHhhc
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG------LNPDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~------~~~~~~~~~~~~i~~~l~~~L 89 (114)
.++|+.+|++++...-++....|.++...-..-.-.+.+.| ++|..+.-.. .++++-.+|.++.++.+....
T Consensus 5 nd~FL~~L~~lf~~~~~~~~gSV~lT~KR~~~~~~~~~~~p-cLiRAt~gkK~KiSTvV~~~~l~~F~~~Y~~v~K~~M 82 (91)
T 2w9j_A 5 NEEFLKKLTDLLQTHQSKGTGSVYLSQKXNPVDEGEGSSAS-VLIRAKSGAAEKISTVVELDYFTDFFQSYAEVXKGQI 82 (91)
T ss_dssp HHHHHHHHHHHHHCC-------CCCEEEEEEECC-----CE-EEEEEECTTSCEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEEecCCCccCCCCCC-EEEEEecCCCCEEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 68999999999988765555566666542100000234456 5666654221 247888999999999988776
No 81
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=61.47 E-value=8 Score=25.06 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=33.0
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
-+.++.+..... -..+..++.+.+.+.|+++.++|.|.-+-. +..||-|
T Consensus 94 NvD~tii~q~PK--i~p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 142 (160)
T 1gx1_A 94 NVDVTIIAQAPK--MLPHIPQMRVFIAEDLGCHMDDVNVKATTT--EKLGFTG 142 (160)
T ss_dssp EEEEEEECSSSC--CGGGHHHHHHHHHHHTTCCGGGEEEEEECC--TTCHHHH
T ss_pred EEEEEEEcCCCc--chHHHHHHHHHHHHHhCCCCceEEEEEccC--CCCCccc
Confidence 344555553221 122446688888899999999999998876 5666655
No 82
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=60.93 E-value=7.7 Score=25.14 Aligned_cols=48 Identities=17% Similarity=-0.029 Sum_probs=32.2
Q ss_pred EEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 61 v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+.++.+..+.. -..+..++.+.+.+.||++.++|.|.-+-. +..||-|
T Consensus 97 vD~tii~q~PK--i~p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 144 (160)
T 2pmp_A 97 LDATLILQRPK--ISPHKETIRSNLSKLLGADPSVVNLKAKTH--EKVDSLG 144 (160)
T ss_dssp EEEEEECSSSC--CGGGHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred EEEEEEecCCc--CHHHHHHHHHHHHHHHCCCcceEEEEEecC--CCCCccc
Confidence 44455553221 123455678888888999999999998876 5666654
No 83
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=59.47 E-value=10 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHH--hhcCCCCCcEEEEEEe
Q 033640 75 KKLSAAISAILE--KKLSVPKSRFFIKFYD 102 (114)
Q Consensus 75 ~~~~~~i~~~l~--~~Lgi~~~ri~I~f~~ 102 (114)
++-.+---+++. +.||+|++|+||++..
T Consensus 104 ~eAI~~Awe~LT~~~~lgl~~erL~vTvf~ 133 (441)
T 3hy0_A 104 LDAILFAWLLLTSEKWFALPKERLWVTVYE 133 (441)
T ss_dssp HHHHHHHHHHHHCTTTTCCCGGGEEEEEET
T ss_pred HHHHHHHHHHhCCCCccCCCHHHeEEEEeC
Confidence 334444556777 4599999999999654
No 84
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=59.39 E-value=8.1 Score=25.10 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=32.9
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
-+.++.+..... -..+..++.+.+.+.|+++.++|.|.-+-. +..||-|
T Consensus 99 NvD~tii~q~PK--l~p~~~~m~~~la~~L~~~~~~V~vKAtT~--E~LGf~G 147 (162)
T 3re3_A 99 NIDCTIIAQAPK--MLPHIEKMRACLANILEIQISQINIKATTT--ERLGFIG 147 (162)
T ss_dssp EEEEEEECSSSC--CGGGHHHHHHHHHHHHTSCGGGEEEEEECC--SSCHHHH
T ss_pred EEEEEEEcCCCc--chhHHHHHHHHHHHHHCCCCceEEEEEecC--CCcCCCc
Confidence 455555554321 122455677888888899999999998876 5666644
No 85
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=59.35 E-value=16 Score=25.93 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=30.7
Q ss_pred eeEEEEEe--ee-CCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 58 AAYGELVS--IG-GLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 58 ~~~v~l~~--~~-~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+.+|-.+. -| ..+.+.+..+++.+.+.+.++.||+++||++
T Consensus 134 a~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~Iil 177 (300)
T 3k13_A 134 AATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIF 177 (300)
T ss_dssp CEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEE
T ss_pred CeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 34555554 22 2567788889999988887889999999986
No 86
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=59.22 E-value=20 Score=21.00 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.3
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+|+.-+++-+.|.+.+++...|+++++-|.+..-
T Consensus 34 ~~~pd~l~~lk~eIl~VIsKYv~Id~~~v~V~l~~~ 69 (95)
T 2kxo_A 34 GQTPDYLPTLRKALMEVLSKYVNVSLDNIRISQEKQ 69 (95)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHSCCCTTSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHheecchhheEEEEEeC
Confidence 467888899999999999999999999999999875
No 87
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=58.04 E-value=9.1 Score=25.34 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=32.7
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
-+.++.++.+.. -..+..++.+.+.+.||++.++|.|.-+-. +..||-|
T Consensus 116 NvD~tIiaq~PK--l~p~~~~mr~~la~~L~i~~~~VnVKATT~--E~LGf~G 164 (183)
T 3f0d_A 116 NVDSTIIAQAPK--LAPHIDAMRANIAADLDLPLDRVNVKAKTN--EKLGYLG 164 (183)
T ss_dssp EEEEEEECSSSC--CGGGHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred EEEEEEEcCCCc--chhHHHHHHHHHHHHHCCCcceEEEEEecC--CCCccCc
Confidence 344555554321 122455677888888899999999999876 5666654
No 88
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=57.33 E-value=38 Score=22.45 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC-eeEEEEE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP-AAYGELV 64 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p-~~~v~l~ 64 (114)
......++.+.+|++++.+++.|.|.-.....+-|-|..+- +|+..+.
T Consensus 133 i~p~~~~m~~nia~~L~i~~~~VnVKAtT~E~LGf~Gr~egIaa~Av~l 181 (187)
T 3b6n_A 133 ISPIREEIVRNISSALGISESQVSLKGKTHEQLGPVGQKKAIECFANAL 181 (187)
T ss_dssp SHHHHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcCcCCCcEEEEEEEE
Confidence 46788999999999999999999999998888887776643 3444443
No 89
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=56.06 E-value=33 Score=21.13 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCCcc--EEEEEEeCCceeeec-CC----CCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcC
Q 033640 18 SSILSEATSTVANIIGKPEA--YVMIVLKGSVPMSFG-GT----EDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~--~i~v~~~~~~~m~~g-g~----~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
..|.++-.+...+.-.+-|. |+.|.+-.+..|.-. |- .++..+..++... ..-...+.+.+.+.||
T Consensus 8 ~rl~eE~~~~e~rrKEr~EahlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k-------~~~~~~~~~~va~~lg 80 (130)
T 2kvr_A 8 ERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLK-------NSSLAEFVQSLSQTMG 80 (130)
T ss_dssp HHHHHHHTTHHHHTCCCCSSTTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCT-------TSBHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeEEEEecHHHHHhccCccCcCCccCCcceEEEec-------cCcHHHHHHHHHHHhC
Confidence 34444444444445555555 777777655444422 32 2333322232222 2223336677889999
Q ss_pred CCCCcEEEEEE
Q 033640 91 VPKSRFFIKFY 101 (114)
Q Consensus 91 i~~~ri~I~f~ 101 (114)
+|++++.+..-
T Consensus 81 ~~~~~~RlW~~ 91 (130)
T 2kvr_A 81 FPQDQIRLWPM 91 (130)
T ss_dssp CCGGGCEEEEC
T ss_pred CCcccEEEEEe
Confidence 99999988765
No 90
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=55.60 E-value=32 Score=22.21 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.-...++.+.+|++++.|.+.|.|.-.....+-|-|..+-
T Consensus 109 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eG 148 (160)
T 2pmp_A 109 SPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRS 148 (160)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHCCCcceEEEEEecCCCCCcccCCCc
Confidence 5677899999999999999999999998888888777653
No 91
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=54.89 E-value=32 Score=22.16 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.-...++.+.+|++++.|.+.|.|.-.....+-|-|..+-
T Consensus 108 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eG 147 (159)
T 1t0a_A 108 APHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKEG 147 (159)
T ss_dssp GGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTSE
T ss_pred hHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCcccCCCc
Confidence 5677899999999999999999999998888888777653
No 92
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=54.38 E-value=14 Score=20.21 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.+-+.+++..++|+++..+.|..
T Consensus 27 ~~lK~~i~~~~~ip~~~qrL~~~g 50 (85)
T 3n3k_B 27 ENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEETB
T ss_pred HHHHHHHHHHHCCCHHHEEEEECC
Confidence 346666777889999999998853
No 93
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=53.50 E-value=40 Score=21.74 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.-...++.+.+|++++.|.+.|.|.-.....+-|-|..+-
T Consensus 107 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eG 146 (160)
T 1gx1_A 107 LPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEG 146 (160)
T ss_dssp GGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTSE
T ss_pred hHHHHHHHHHHHHHhCCCCceEEEEEccCCCCCcccCCCc
Confidence 5677899999999999999999999998888888877654
No 94
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=53.20 E-value=29 Score=20.87 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=24.9
Q ss_pred EeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEE
Q 033640 7 STNVKLDGVDTSSILSEATSTVANIIGKPEAYVMI 41 (114)
Q Consensus 7 ~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v 41 (114)
+..+...++ .-+--+++.+++|+.+|.|.+.|.+
T Consensus 39 kV~v~ApP~-dGkAN~ali~~LAk~l~V~ks~V~I 72 (108)
T 1n91_A 39 KVAITAPPV-DGQANSHLVKFLGKQFRVAKSQVVI 72 (108)
T ss_dssp EEECCCCSS-HHHHHHHHHHHHHHHTCCCTTTEEE
T ss_pred EEEEecCCC-CChHHHHHHHHHHHHhCCccceEEE
Confidence 334444444 3466789999999999999987765
No 95
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=52.70 E-value=16 Score=19.34 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 25 ~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 25 NVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp HHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHCcCHHHeEEEEC
Confidence 3556666778999999999884
No 96
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=52.35 E-value=16 Score=24.29 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC-------------CCe--eEEEEEeeeCCChHHhHH
Q 033640 12 LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE-------------DPA--AYGELVSIGGLNPDVNKK 76 (114)
Q Consensus 12 ~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~-------------~p~--~~v~l~~~~~~~~~~~~~ 76 (114)
+|+. +-++..+++++-..++.+. |=.++-+...-+-|-++ .-+ .-+.++.+..+. +-..
T Consensus 62 HSDg--DVl~HAi~DAlLGA~~lGD--IG~~FPdtdp~~kga~S~~lL~~a~~l~~~~Gy~I~NvD~tiiaq~P--Ki~p 135 (187)
T 3b6n_A 62 HSDG--DVIFHALVDALLGGMSCSD--LGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVP--KISP 135 (187)
T ss_dssp SSCC--CHHHHHHHHHHHHHTTCC-----------------CCTHHHHHHHHHHHHHTTEEEEEEEEEEECSSS--CSHH
T ss_pred cCHH--HHHHHHHHHHHHHhccCCC--CcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCC--cchH
Confidence 4543 6678888888887777543 22223222222222111 112 234455555432 2234
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 77 LSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+..++.+.+.+.|+++.++|.|.-+-. +..||-|
T Consensus 136 ~~~~m~~nia~~L~i~~~~VnVKAtT~--E~LGf~G 169 (187)
T 3b6n_A 136 IREEIVRNISSALGISESQVSLKGKTH--EQLGPVG 169 (187)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcceEEEEEecC--CCCCcCc
Confidence 566788888899999999999998876 5666654
No 97
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=52.06 E-value=48 Score=23.86 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 24 ATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
=++.+++..|.+ +.+|....++-+..+--+.-|.. .....++++.-.+..+.+.+.+.+.+||..-||.|.
T Consensus 135 hTE~la~~~g~~-~~~Mml~~~~LrV~lvT~HipL~----~V~~~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~ 205 (328)
T 1yxo_A 135 HTEFLADLTHTA-QVVMMLATRGLRVALATTHLPLR----EVADAISDERLTRVARILHADLRDKFGIAHPRILVC 205 (328)
T ss_dssp HHHHHHHHTTCS-CCEEEEEETTEEEEESSCSCCHH----HHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred HHHHHHHHhCCC-CeEEEEecCCcEEEEeccCccHH----HHHHhcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 466777777743 34444444322222221112210 012347899999999999999999999998887663
No 98
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=51.92 E-value=41 Score=21.76 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.-...++.+.+|++++.|.+.|.|.-.....+-|=|..+-
T Consensus 112 ~p~~~~m~~~la~~L~~~~~~V~vKAtT~E~LGf~Gr~EG 151 (162)
T 3re3_A 112 LPHIEKMRACLANILEIQISQINIKATTTERLGFIGREEG 151 (162)
T ss_dssp GGGHHHHHHHHHHHHTSCGGGEEEEEECCSSCHHHHTTSE
T ss_pred hhHHHHHHHHHHHHHCCCCceEEEEEecCCCcCCCcccce
Confidence 5567899999999999999999999998888887776654
No 99
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=51.63 E-value=17 Score=19.22 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 24 ~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 24 ERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 34566667778999999999884
No 100
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG, structural genomics, protein structure initiative; 2.65A {Enterococcus faecalis} SCOP: d.190.1.2
Probab=51.57 E-value=37 Score=20.41 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=30.0
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHH-hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDV-NKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~-~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..+|+.|+.++..-.+.++ ++.+. ...|.++-+......+-+.. ...+...+.+++++++|+...+..-.+.-..
T Consensus 20 ~~ia~~L~l~~g~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~~ 95 (145)
T 3ddv_A 20 SSEMEKLQLGPEDSILRME---RIRFA-DDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQTISAVQ 95 (145)
T ss_dssp HHHHHHHTCCTTSCEEEEE---EEEEE-TTEEEEEEEEEEEGGGC----------------------CCCCEEEEEEEEE
T ss_pred HHHHHhCCcCCCCEEEEEE---EEEee-CCCcEEEEEEEeeHHHcCCcchhHhhhhHHHHHHHhhCCceEEEEEEEEEEe
Confidence 3477888877653333333 23333 35787665555433322211 1234457899999999998888776665543
No 101
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=51.54 E-value=39 Score=22.28 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.-...++.+.+|++++.|.+.|.|.-.....+-|=|..+-
T Consensus 129 ~p~~~~mr~~la~~L~i~~~~VnVKATT~E~LGf~Gr~EG 168 (183)
T 3f0d_A 129 APHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEG 168 (183)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSE
T ss_pred hhHHHHHHHHHHHHHCCCcceEEEEEecCCCCccCcCcce
Confidence 5567899999999999999999999998888888777654
No 102
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.83 E-value=23 Score=19.47 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 31 ~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 31 LGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp HHHHHHHHHHTCCCTTTEEEEET
T ss_pred HHHHHHHHHHhCCChHHEEEEEC
Confidence 34666677788999999999874
No 103
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=50.77 E-value=19 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
.+-+.++.++|.+.+||+++|+.+.-
T Consensus 68 ~~RA~aV~~~L~~~~Gi~~~ri~~~g 93 (123)
T 3td3_A 68 LARANSVKSALVNEYNVDASRLSTQG 93 (123)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHEEEEE
Confidence 33456788899888999999997753
No 104
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=50.17 E-value=33 Score=20.74 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=34.3
Q ss_pred CeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 57 PAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 57 p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
+-.++.++..|.++.+..+++...+-+.+++ .+.+.=|+++.+.+.+
T Consensus 18 ~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~-~~~~~i~lL~~~~~f~ 64 (127)
T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQ-VDQPKVSLFLDATELD 64 (127)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTT-CCCSSCCEEEEEEEEE
T ss_pred CCCEEEEEEeeeECHHHHHHHHHHHHHHHhh-ccCCCEEEEEEccCCC
Confidence 4467899999999999888777777766654 1245566888888763
No 105
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=50.17 E-value=11 Score=30.18 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+-...-.++.+-- --...+.|.--....+++-+++.+...+.|+++++++
T Consensus 482 GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 559 (769)
T 1rm6_A 482 GQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYS--SRVTFMVGNASISAAEELKGVLVKAAAKKLDAREEDI 559 (769)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHe
Confidence 45678899999999999999999998764322222211100 0000111222245566777777777788889988887
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 560 ~~ 561 (769)
T 1rm6_A 560 EV 561 (769)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 106
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=50.08 E-value=39 Score=20.25 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=35.1
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeee----CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIG----GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~----~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+++.|+.++..-.+.++ ++.+. ...|.++-+..... ++..+ .+...+.+++++++|+...+..-.+.
T Consensus 23 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~ylp~~~~~~l~~~---~~~~sly~~l~~~~g~~~~~~~~~i~ 95 (143)
T 3lhe_A 23 EIIAEKLGISVGDFVYKII---RLRII-HSIPTIMEHTWMPISVIPGVEVS---VLEESIYSHIQNKLGLQVGTSVVRVK 95 (143)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEEE-TTEEEEEEEEEEETTTSCCCC------------------CCCCEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEE---EEEEE-CCcEEEEEEEEeeHHHcCCCCHH---HhhhhHHHHHHHHcCCCeeEEEEEEE
Confidence 4578889987765444443 23333 35687665555432 23322 33467999999999999888877776
Q ss_pred eCCC
Q 033640 102 DTKA 105 (114)
Q Consensus 102 ~~~~ 105 (114)
-..+
T Consensus 96 a~~a 99 (143)
T 3lhe_A 96 GIRP 99 (143)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 107
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=49.23 E-value=15 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..++|+++..+.|.
T Consensus 27 ~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 27 ENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 34666677788999999998874
No 108
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=48.62 E-value=84 Score=23.66 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcc----EEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 17 TSSILSEATSTVANIIGKPEA----YVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~----~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
++++++++...++..+|.|+. ...-...+.. . -|. .+.++|.. |.++.+|+.
T Consensus 213 ~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd--------~--~~~----~~~~TP~~----------F~~~~v~~~ 268 (457)
T 2e01_A 213 REQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKD--------K--KIH----TIKSTPLE----------FASKYAKLD 268 (457)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTT--------S--CEE----EEEECHHH----------HHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCC--------C--Ccc----CCCcChHH----------HHHHHcCCC
Confidence 457888999999999999987 5555554422 1 111 33456654 344557888
Q ss_pred CCcEEEEEEeCCCCCc
Q 033640 93 KSRFFIKFYDTKASHF 108 (114)
Q Consensus 93 ~~ri~I~f~~~~~~~~ 108 (114)
.++ ||.+..-+.+-+
T Consensus 269 ~~d-yV~l~n~p~~py 283 (457)
T 2e01_A 269 PST-PVSLINDPRHPY 283 (457)
T ss_dssp TTS-EEEEECCTTSCT
T ss_pred chh-eEEEeecCCCcc
Confidence 877 787776665433
No 109
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=48.50 E-value=55 Score=23.59 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 24 ATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
=++.+++..|.+ +.+|....++-+..+--+.-|.. .....++++.-.+..+.+.+ +.+.+||..-||.|.
T Consensus 142 HTE~la~~~g~~-~~~Mml~~~~LrV~lvT~HipL~----~V~~~it~e~i~~~i~~~~~-L~~~fgi~~PrIaV~ 211 (330)
T 2hi1_A 142 HTELLATLTHSR-DYAMVLYTDKLKVIHVSTHIALR----KFLDTLSTARVETVIGIADT-FLKRVGYVKPRIAVA 211 (330)
T ss_dssp HHHHHHHHTTCC-CCEEEEECSSCEEEESCCSSCHH----HHHHHCCHHHHHHHHHHHHH-HHHHTTCSSCEEEEE
T ss_pred HHHHHHHHhCCC-CeEEEEecCCcEEEEeecCccHH----HHHHhcCHHHHHHHHHHHHH-HHHHcCCCCCCEEEE
Confidence 466777777743 34444343322222221111210 01234789998999998888 999999998887664
No 110
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=47.61 E-value=72 Score=22.81 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHHHhhc
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l~~~L 89 (114)
...|++.+.+.+.+.+|.+.+-+-- .. .-...-.+.-|+++||+-.+.. .+++..++++++|++-+ +-+
T Consensus 111 s~~LA~~I~~~l~~~~g~~~RGvk~--~~-~~~vLr~t~~PaVLVE~GFisN~~D~~~L~~~~~q~~iA~aIa~GI-~y~ 186 (326)
T 1xov_A 111 GRKLAVEISAKMAKALGLPNRGAKA--TK-DLRFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGL-TGK 186 (326)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEE--ES-CCHHHHHCSSCEEEEEEEETTCHHHHHHHTSTTHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccc--cC-CceeecCCCCCEEEEEecCCCCHHHHHHhcCHHHHHHHHHHHHHHH-HHh
Confidence 4678888888888888865443321 12 2223335678999999976643 24556789999999998 777
Q ss_pred CCCCC
Q 033640 90 SVPKS 94 (114)
Q Consensus 90 gi~~~ 94 (114)
+.+..
T Consensus 187 ~~~~~ 191 (326)
T 1xov_A 187 TVAAK 191 (326)
T ss_dssp CCSCC
T ss_pred ccCCC
Confidence 76543
No 111
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.38 E-value=27 Score=19.23 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 33 ~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 33 EELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp HHHHHHHHHHSCCCTTTEEEEET
T ss_pred HHHHHHHHHHHCcChhhEEEEEC
Confidence 34666677888999999999884
No 112
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.29 E-value=24 Score=18.96 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 32 ~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 32 TLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp HHHHHHHHHTCCCTTTCEEEET
T ss_pred HHHHHHHHHHCcCHHHEEEEEC
Confidence 4566677788999999999874
No 113
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.25 E-value=23 Score=19.88 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..|.+.+++..|||+++..+.|.
T Consensus 35 ~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 35 QDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEET
T ss_pred HHHHHHHHHHHCcCHHHEEEEEC
Confidence 44667777888999999999874
No 114
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=46.63 E-value=41 Score=21.54 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=23.4
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe---CCCCCccc
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD---TKASHFNF 110 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~---~~~~~~g~ 110 (114)
|+++...+.-+.+.+++ +.+|++.+++...-+. .+.++|.+
T Consensus 142 R~~~l~~e~~~~f~~~~-~~~G~~~~~ii~~~q~~~C~~~~~~~~ 185 (190)
T 3s26_A 142 RTKELSPELKERFTRFA-KSLGLKDDNIIFSVPTDQCIDNSAWSH 185 (190)
T ss_dssp SSSCCCHHHHHHHHHHH-HHTTCCGGGEEEEECCSSSTTCC----
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCCHHHEEECCCCCcccCcccccc
Confidence 55555555555555554 6799999998766543 33455543
No 115
>3hma_A N-acetylmuramoyl-L-alanine amidase XLYA; endolysin, cell WALL biogenesis/degradation, compet hydrolase, secreted, sporulation; 2.20A {Bacillus subtilis} PDB: 3rdr_A 3hmb_A
Probab=45.92 E-value=34 Score=21.57 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhcCCCCCcEE
Q 033640 76 KLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
+-...|++.|.+..||+++||.
T Consensus 110 ~a~~~L~~~l~~~y~i~~~~V~ 131 (157)
T 3hma_A 110 ANAQWLIKTLMAEHNISLANVV 131 (157)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEE
Confidence 4456677888888999999853
No 116
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=45.38 E-value=23 Score=19.13 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=16.7
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 27 l~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 27 LMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp HHHHHHHHHTCCTTTCEEEET
T ss_pred HHHHHHHHhCCCcceEEEEEC
Confidence 556666788999999988884
No 117
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=45.10 E-value=46 Score=19.67 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=20.0
Q ss_pred hHHhHHH----HHHHHHHHHhhcCCCCCcEEEE
Q 033640 71 PDVNKKL----SAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 71 ~~~~~~~----~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+.|.++ +.++.++|.+ .||+++|+.+.
T Consensus 52 ~~~N~~LS~~RA~aV~~~L~~-~Gi~~~ri~~~ 83 (118)
T 2hqs_H 52 PEYNISLGERRANAVKMYLQG-KGVSADQISIV 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHEEEE
Confidence 3445555 4578888876 49999999765
No 118
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=45.01 E-value=24 Score=18.89 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 29 ~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 29 ELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp HHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHCcChhhEEEEEC
Confidence 3555667778999999999884
No 119
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=44.95 E-value=24 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 35 ~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 35 KDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 34556667778999999999874
No 120
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=44.17 E-value=13 Score=29.94 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+-. .-.++-+-- --...+.|.--....+++-+++.+.-.+.|+++++++
T Consensus 507 GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~-~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 583 (788)
T 1t3q_B 507 GQGHETTLAQIAADVLGVPASDVVIQAGSTK-NTYGFGAYA--SRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDI 583 (788)
T ss_dssp SSCHHHHHHHHHHHHHTSCGGGEEEECSBTT-SCCBCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEecCCCC-CCCCCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHE
Confidence 4567889999999999999999999775432 222211100 0000111222245566677777777778889998887
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 584 ~~ 585 (788)
T 1t3q_B 584 VI 585 (788)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 121
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=43.98 E-value=26 Score=18.60 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=17.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 28 ~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 28 QFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp HHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHhCCCHHHEEEEEC
Confidence 3555666778999999999874
No 122
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=43.96 E-value=31 Score=19.63 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 38 ~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 38 SSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp HHHHHHHHHHSSSCTTTEEEEET
T ss_pred HHHHHHHHHHHCcCHHHEEEEEC
Confidence 34666777788999999999874
No 123
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=43.37 E-value=13 Score=30.02 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+-...-.++.+-- --...+.|.--....+++-+++.+.-.+.|+++++++
T Consensus 523 GqG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 600 (803)
T 1ffv_B 523 GQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYG--SRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDL 600 (803)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGE
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 46678899999999999999999997754321111110000 0000011222245566777777777778888888876
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 601 ~~ 602 (803)
T 1ffv_B 601 DW 602 (803)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 124
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=43.37 E-value=25 Score=28.16 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCC--CCCccccc
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTK--ASHFNFLV 112 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~--~~~~g~~g 112 (114)
..++....+.||||.++|.|...|-+ |..+|..|
T Consensus 487 T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~a 522 (769)
T 1rm6_A 487 TMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYS 522 (769)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCT
T ss_pred HHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCcc
Confidence 34777888999999999999998875 34444443
No 125
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=43.36 E-value=21 Score=19.93 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 33 ~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 33 ENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHCcChhhEEEEEC
Confidence 34556667778999999999874
No 126
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=42.89 E-value=25 Score=20.43 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 72 DVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 72 ~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-+++.....+.+.+.+.++++++.+
T Consensus 13 ~~~~~i~~~l~~ila~~l~v~~~~I 37 (100)
T 1vku_A 13 MERKKLIAKFVEIASEKMGKDLETV 37 (100)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHC
Confidence 3567788899999999999988754
No 127
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=42.57 E-value=28 Score=19.74 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 24 ~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 24 ENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp HHHHHHHHHHTCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChhhEEEEEC
Confidence 34666677788999999999884
No 128
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=42.30 E-value=27 Score=18.73 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 29 ~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 29 HLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp HHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHhhcCCCHHHEEEEEC
Confidence 3555667778999999998885
No 129
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=42.26 E-value=32 Score=19.66 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 31 l~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 31 LMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp HHHHHHHHTTCCSTTEEEEET
T ss_pred HHHHHHHHhCCCcccEEEEEC
Confidence 556667789999999998884
No 130
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=42.08 E-value=26 Score=19.32 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.|.+.+.+..|++++.+.+.|.
T Consensus 33 kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 33 VLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp HHHHHHHHHHTCTTCCCEEEET
T ss_pred HHHHHHHHHhCCCcccEEEEEC
Confidence 3666677888999999888884
No 131
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=42.08 E-value=13 Score=29.86 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+-...-.++.+--. -...+.|.--....+++-+++.+.-.+.|+++++++
T Consensus 529 GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aS--r~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 606 (809)
T 1n62_B 529 GQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGS--RSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDL 606 (809)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTT--CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 456788999999999999999999977542211112100000 000001111245566777777777778888888876
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 607 ~~ 608 (809)
T 1n62_B 607 EW 608 (809)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 132
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=41.75 E-value=9.2 Score=30.68 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-......+.+..|+.||.|.+.|.|..-+-...-.++-+- +--...+.|.--....+++-+++.++-.+.|+++++++
T Consensus 489 GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~--aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~~~~~~~~l 566 (777)
T 2w3s_B 489 GQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATA--ASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDV 566 (777)
T ss_dssp SSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGC
T ss_pred CCChhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 4667889999999999999999998765322111111000 00000011222244556666667777777788888776
Q ss_pred EE
Q 033640 97 FI 98 (114)
Q Consensus 97 ~I 98 (114)
.+
T Consensus 567 ~~ 568 (777)
T 2w3s_B 567 IF 568 (777)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 133
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=41.60 E-value=28 Score=19.53 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 25 ~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 25 ENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHhhhCCChhHEEEEEC
Confidence 34566667778999999999884
No 134
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=41.32 E-value=24 Score=17.30 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcCCCCC
Q 033640 79 AAISAILEKKLSVPKS 94 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ 94 (114)
..+.+.+++++||+..
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4577889999999864
No 135
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=40.94 E-value=29 Score=19.28 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 34 ~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 34 LVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 34666677778999999999884
No 136
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=40.65 E-value=44 Score=19.19 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+.+-+.+++..|||+++-.+.|.+
T Consensus 41 ~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 41 AQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp HHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred HHHHHHHHHHHCcCHHHeEEEEec
Confidence 346777888889999999999974
No 137
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=40.57 E-value=51 Score=25.89 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=32.5
Q ss_pred CCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcC--CCCCcEEEEEE
Q 033640 55 EDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS--VPKSRFFIKFY 101 (114)
Q Consensus 55 ~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg--i~~~ri~I~f~ 101 (114)
..+.+||.+...+ ++ ..+..++.+.|++.+| ++.++|.|+-+
T Consensus 53 ~~rvv~Vs~D~~~-~~----~~v~~~V~~~L~~~~g~~~~~~nV~isaT 96 (646)
T 2zws_A 53 GRRLVYVNTDLGM-IF----QAVHLKVLARLKAKYPGVYDENNVMLAAT 96 (646)
T ss_dssp CCEEEEEEESSSC-CC----HHHHHHHHHHHHHHSTTTCCTTTEEEEEC
T ss_pred CCEEEEEEECccc-CC----HHHHHHHHHHHHHHhCCCCChhHEEEEee
Confidence 6889999998754 54 3455667777778899 99999999875
No 138
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.39 E-value=32 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+-+.+++.+++|+++..+.|.
T Consensus 42 LKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 42 LKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp HHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHhhhCCChHHEEEEEC
Confidence 555666778999999998884
No 139
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=40.01 E-value=24 Score=21.36 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=30.8
Q ss_pred CeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 57 PAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 57 p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+-.++.++..|.++.+..+++...+-+.++++ +=|.=|+++.+.+.
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~-~~~~i~ll~~~~~f 63 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGI-KTPEIVALIDITEL 63 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTC-CSSCEEEEEEEEEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhC-CCceEEEEEEecCC
Confidence 44678999999999988777666555555321 22226777777665
No 140
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=39.67 E-value=29 Score=18.61 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+.+++..|+|+++..+.|.
T Consensus 29 lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 29 LKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHCCCcccEEEEEC
Confidence 445556678999999998873
No 141
>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} SCOP: d.147.1.1
Probab=39.38 E-value=25 Score=25.22 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+.+.+.+++||+|+++|+...+-
T Consensus 149 v~e~iA~~cgV~p~~v~~lvapT 171 (316)
T 1qlm_A 149 VAEHVADECGVDPENLYLLVAPT 171 (316)
T ss_dssp HHHHHHHHHTSCGGGEEEEEECS
T ss_pred HHHHHHHHcCCCHHHEEEEEecC
Confidence 78888999999999999988765
No 142
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.24 E-value=38 Score=19.57 Aligned_cols=22 Identities=5% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.|-+.+++..||++++..+.|.
T Consensus 41 ~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 41 QLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp HHHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHHHHHCcChhhEEEEEC
Confidence 3556667778999999999874
No 143
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=39.18 E-value=38 Score=19.53 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=17.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|..+.++ .+.+.+.+.++..
T Consensus 53 ~~lrIqT~~~~~p--~~al~~a~~~l~~ 78 (92)
T 2pa8_L 53 IIVKILTDGSITP--KDALLKAIENIRG 78 (92)
T ss_dssp EEEEEEECSSSCH--HHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 6789999876553 3666666665544
No 144
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.06 E-value=29 Score=19.96 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 33 l~~~y~~~~gi~~~~~rf~Fd 53 (94)
T 2io1_B 33 LMKAYCERQGLSMRQIRFRFD 53 (94)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHhCCCcccEEEEEC
Confidence 666677888999999998884
No 145
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* 2yep_A*
Probab=38.71 E-value=80 Score=20.56 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=28.7
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-++=.+-++++++.+.+.||+++++|.+.=+
T Consensus 72 ~TG~~G~~da~~~~~~~A~~lg~~~~~Vlv~ST 104 (173)
T 2v4i_A 72 ATGLEGEENAREVREAVARALGLPEGEMLIAST 104 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCchhEEEecC
Confidence 566777889999999999999999999998644
No 146
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=38.51 E-value=29 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|||+++..+.|.
T Consensus 29 ~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 29 HLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp HHHHHHHHHTCSCTTTEEEESS
T ss_pred HHHHHHHHHhCCChhHEEEEEC
Confidence 3556667778999999999875
No 147
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=38.31 E-value=33 Score=18.35 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
....+.+.+.+.+.+|++++.+
T Consensus 5 ~~i~~~l~~ii~~~l~~~~~~i 26 (81)
T 2lol_A 5 DKIEQKVIEMVAEKLNKDKAII 26 (81)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCChhhC
Confidence 4566778888889999877654
No 148
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=38.24 E-value=26 Score=28.09 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCC--CCCccccc
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTK--ASHFNFLV 112 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~--~~~~g~~g 112 (114)
..++....+.||||.++|.|...|-+ |..+|..|
T Consensus 494 T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~a 529 (777)
T 2w3s_B 494 AKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAA 529 (777)
T ss_dssp HHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCT
T ss_pred HHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCcc
Confidence 44778888999999999999998874 44455444
No 149
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=37.71 E-value=29 Score=19.64 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 41 ~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 41 AQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEET
T ss_pred HHHHHHHHHHhCcChhHEEEEEC
Confidence 34556667778999999999874
No 150
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=37.34 E-value=35 Score=18.72 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+-+.+++..|+|+++..+.|.
T Consensus 43 lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 43 FKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHhCCCHHHEEEEEC
Confidence 555566778999999999884
No 151
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.27 E-value=30 Score=20.41 Aligned_cols=24 Identities=4% Similarity=0.194 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
...+-+.+++..|+|++|..+.|.
T Consensus 51 V~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 51 IGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 345667777888999999999875
No 152
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=37.19 E-value=35 Score=19.66 Aligned_cols=23 Identities=4% Similarity=0.249 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 45 ~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 45 QQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChhhEEEEEC
Confidence 34566667778999999999874
No 153
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=37.16 E-value=49 Score=19.10 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEe
Q 033640 80 AISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+-+.|++..|||+++-.+.|..
T Consensus 41 ~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 41 AVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp HHHHHHHHHHCCCTTSEEEEEEC
T ss_pred HHHHHHHHHHCcCHHHeEEEEec
Confidence 46677888889999999999976
No 154
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=36.90 E-value=64 Score=18.95 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 16 DTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 16 ~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
+.+.....+.+.++..+|-|..|- +..|.- .-.|. +++++...++...+.+.+.+ +|++++
T Consensus 42 d~~~~~~~l~~fl~~~~gGp~~Y~------g~~m~~--~H~~~---------~I~~~~f~~wl~~~~~al~~-~~~~~~ 102 (121)
T 3aq9_A 42 DMDHQTKQETDFLTMLLGGPNHYK------GKNMTE--AHKGM---------NLQNLHFDAIIENLAATLKE-LGVTDA 102 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCCC------SCCHHH--HTTTS---------CBCHHHHHHHHHHHHHHHHH-TTCCHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCC------CccHHH--HhcCC---------CcCHHHHHHHHHHHHHHHHH-cCCCHH
Confidence 457788899999999999999881 222210 00111 58999999999999999965 677653
No 155
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=36.79 E-value=35 Score=19.63 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-+.+++..|+|+++..+.|.
T Consensus 49 ~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 49 QFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp HHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHCcChhhEEEEEC
Confidence 3555666778999999999873
No 156
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=36.75 E-value=95 Score=20.85 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=28.3
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+-++=.+-++++++.+.+.||+++++|.+.=+
T Consensus 103 ~TG~~G~~da~~~a~~~A~~lgi~~~~VlvaST 135 (208)
T 1vra_A 103 CTGKRGLDDAYTMRAVGAETFHIPEHYVAVTST 135 (208)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCChhHEEEeCC
Confidence 566777888999999999999999999988644
No 157
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.64 E-value=49 Score=20.28 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=16.9
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|..+.++ .+.|.+.+.+++.
T Consensus 70 ~~lrIqT~~~~~p--~eaL~~al~~L~~ 95 (123)
T 3h0g_K 70 FILRVQTVEDCSP--KQVIVDAAKSLIT 95 (123)
T ss_dssp EEEEEECCSSSCS--HHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 5789999866554 3666666655544
No 158
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=36.61 E-value=33 Score=19.58 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 43 l~~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 43 LMKAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHhCCCccceEEEEC
Confidence 666677888999999998884
No 159
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.51 E-value=40 Score=20.10 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=24.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKP 35 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (114)
.|.+.+..+...++.+...+.+.+.+...+.+|-|
T Consensus 71 ~P~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~ 105 (128)
T 2ebm_A 71 APLYEIFSQENLEDNDVSDILKLLALQAEENLGMV 105 (128)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 38888887666666656777777777776666654
No 160
>4gvq_A Methenyltetrahydromethanopterin cyclohydrolase; HET: N4M; 1.30A {Archaeoglobus fulgidus} PDB: 4gvr_A 4gvs_A*
Probab=36.28 E-value=30 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+.+.+.+.+||+|+++|+...+-
T Consensus 149 v~~~iA~~cgv~p~~l~llvapT 171 (316)
T 4gvq_A 149 VMEFIAKECDVDPENVYALVAPT 171 (316)
T ss_dssp HHHHHHHHHTSCGGGEEEEEECS
T ss_pred HHHHHHHHcCCCHHHEEEEEecC
Confidence 68888899999999999998765
No 161
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=36.20 E-value=45 Score=22.91 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=20.0
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
+++++.+.+.+.+.+++ +..+|++++|.
T Consensus 122 ~t~aQ~~al~~L~~~L~-~~y~i~~~~V~ 149 (261)
T 3d2y_A 122 FEPAQIQALIPLAKDII-ARYHIKPENVV 149 (261)
T ss_dssp CCHHHHHHHHHHHHHHH-HHHTCCGGGEE
T ss_pred CCHHHHHHHHHHHHHHH-HHcCCCcccEe
Confidence 67788777777555554 55699998865
No 162
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=36.13 E-value=38 Score=19.72 Aligned_cols=25 Identities=4% Similarity=0.146 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
...+-+.+++..|+|+++..+.|.-
T Consensus 44 I~~LK~~I~~k~Gip~~qQrLif~G 68 (93)
T 3plu_A 44 VGDFKKVLSLQIGTQPNKIVLQKGG 68 (93)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred HHHHHHHHHHHhCCCHHHEEEEeCC
Confidence 3446667788889999999998843
No 163
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=36.12 E-value=43 Score=18.71 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
..+-+.+++..|||++|..+.
T Consensus 31 ~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 31 LDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp HHHHHHHHHHTCCCTTTCEEE
T ss_pred HHHHHHHHHHHCcCHHHeEEE
Confidence 457777888899999999998
No 164
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=35.92 E-value=24 Score=19.30 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 36 ~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 36 ERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp HHHHHHHHHHHCCCGGGCCEEET
T ss_pred HHHHHHHHHHHCcCHHHEEEEEC
Confidence 34666667778999999988874
No 165
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=35.88 E-value=33 Score=19.10 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 24 ~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 24 ERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHCcChhHEEEEEC
Confidence 33556667778999999998884
No 166
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.76 E-value=42 Score=19.71 Aligned_cols=23 Identities=4% Similarity=0.132 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 43 ~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 43 RELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp HHHHHHHHHHTTCCSTTCEEEET
T ss_pred HHHHHHHHHHHCcCHHHeEEEeC
Confidence 34667788899999999888764
No 167
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=35.62 E-value=53 Score=20.21 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=21.5
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++++...+.-+.+.++. +.+|++.+++...
T Consensus 116 R~~~~~~e~~~~f~~~~-~~~G~~~~~i~~~ 145 (160)
T 3sao_A 116 RSREVSPTAMAIFRKLA-RERNYTDEMVAVL 145 (160)
T ss_dssp SSSSCCHHHHHHHHHHH-HTTTCCGGGEEEC
T ss_pred cCCCCCHHHHHHHHHHH-HHcCCCHHHEEEC
Confidence 66666666666666665 5689999998753
No 168
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=35.45 E-value=39 Score=18.01 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
......+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~~i~~~l~~~~~~i 27 (82)
T 2cnr_A 6 EEIVAGLAEIVNEIAGIPVEDV 27 (82)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHC
Confidence 4566778889999999887654
No 169
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=35.45 E-value=33 Score=19.09 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+++++..+.|.
T Consensus 41 ~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 41 ENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHhhhCCChhhEEEEEC
Confidence 34566667778999999998884
No 170
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=35.20 E-value=51 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEe
Q 033640 80 AISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+-+.|++..|||+++..+.|..
T Consensus 32 ~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 32 DLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEC
T ss_pred HHHHHHHHHhCCCHHHeEEEEec
Confidence 36677778889999999999975
No 171
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=34.99 E-value=47 Score=18.66 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+-+.+++..|||+++..+.|.+-
T Consensus 30 lK~ki~~~~Gip~~~QrLi~~~~ 52 (86)
T 4b6w_A 30 IKENVFTHFATPPEYMQLQLIDD 52 (86)
T ss_dssp HHHHHHTTSCCCGGGEEEEEECT
T ss_pred HHHHHHHHHCCCHHHEEEEEecC
Confidence 66778899999999999998754
No 172
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=34.98 E-value=69 Score=22.16 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=28.8
Q ss_pred eeEEEEEe--eeC-CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 58 AAYGELVS--IGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 58 ~~~v~l~~--~~~-~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+.+|-.+. .|. .+.+.+.++.+.+.+.+. +.||+++||++
T Consensus 126 ~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~-~~Gi~~~~Iil 168 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKDANDRSQLAMELVANAD-AHGIPMTELYI 168 (271)
T ss_dssp CEEEEESCBTTBCCCSHHHHHHHHHHHHHHHH-HTTCCGGGEEE
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCcccEEE
Confidence 44555554 232 456777888888888885 78999999986
No 173
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=34.92 E-value=41 Score=18.55 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+-+.+++..|+++++..+.|.
T Consensus 31 lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 31 FKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHhCCCHHHEEEEEC
Confidence 555666778999999988874
No 174
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.66 E-value=75 Score=19.31 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=22.2
Q ss_pred EEEEeeeCCChHHhHHHHHHHHHHHHhhcCC-CCC
Q 033640 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSV-PKS 94 (114)
Q Consensus 61 v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi-~~~ 94 (114)
+++...|.+-.|.-++-+++-|..+ +.||+ +++
T Consensus 63 mef~a~G~rK~eAE~kAAA~AC~kL-K~Lgll~p~ 96 (119)
T 2db2_A 63 VEVEGYGSKKIDAERQAAAAACQLF-KGWGLLGPR 96 (119)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH-HHHTSSCTT
T ss_pred EEEEeeccchHHHHHHHHHHHHHHH-HHcCccCCC
Confidence 5566678777777666677777777 67774 444
No 175
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=34.61 E-value=44 Score=26.89 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
|++-.+---++|.+.||+|++|++- .| .-|..+|
T Consensus 163 K~eaI~~awe~lT~~~gl~~~ri~~--~d---NfW~~GG 196 (752)
T 2zze_A 163 MDETVELAFEFFTKELXMXPEDITF--KE---NPWAGGG 196 (752)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGEEE--EE---CCEEETT
T ss_pred HHHHHHHHHHHHhhhhhcchhheee--cc---CcccCCC
Confidence 4445555677888889999999953 33 3676655
No 176
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=34.56 E-value=26 Score=28.06 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeC--CCCCccccc
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDT--KASHFNFLV 112 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~--~~~~~g~~g 112 (114)
..+++...+.||||.++|.|...|- .|..+|..|
T Consensus 474 T~~aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~a 509 (755)
T 3nvz_C 474 TKMVQVASKALKIPISKIYISETSTNTVPNSSPTAA 509 (755)
T ss_dssp HHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCT
T ss_pred HHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCch
Confidence 3467777889999999999998774 455555544
No 177
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=34.50 E-value=57 Score=20.80 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=36.2
Q ss_pred CCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC-CCeeEEEEEe
Q 033640 11 KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE-DPAAYGELVS 65 (114)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~-~p~~~v~l~~ 65 (114)
+.+.+.-..|.+.+.+.+-.-..| -+-+|+.++...++.-|=.+ +...|+++..
T Consensus 117 shpnetyskfreriaenilqntsk-gsvvmisieqathwiagfndgekimfldvqt 171 (220)
T 3b21_A 117 SHPNETYSKFRERIAENILQNTSK-GSVVMISIEQATHWIAGFNDGEKIMFLDVQT 171 (220)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHSCT-TCEEEEEETTTTEEEEEEECSSCEEEEBTTT
T ss_pred cCCchhHHHHHHHHHHHHHhccCC-CcEEEEEhhhhhhhhhccCCCceEEEEEeec
Confidence 344454667888888777776666 45789999988888877322 5555665543
No 178
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=34.42 E-value=74 Score=18.93 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=42.6
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHH-hHHHH-HHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDV-NKKLS-AAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~-~~~~~-~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+++.++.++..-.+.++ ++.+. ...|.++-+......+ +.. ...+. ..+.++++++ |+...+..-.+.-.
T Consensus 22 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~-~~l~~~~~~~~sly~~l~~~-g~~~~~~~~~i~a~ 95 (149)
T 2p19_A 22 SAIAEKLGVSAGDEVLLIR---RLRST-GDIPVAILENYLPPAF-NDVSLDELEKGGLYDALRSR-GVVLKIANQKIGAR 95 (149)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEEE-TTEEEEEEEEEECGGG-TTCCHHHHHHSCHHHHHHHT-TCCCCEEEEEEEEE
T ss_pred HHHHHHcCcCCCCEEEEEE---EEEeE-CCeeEEEEEEEecccc-CCcChhhccCCCHHHHHHhC-CceeEEEEEEEEEE
Confidence 4577788876654444343 23333 3578766665544334 433 33343 3588999998 99887766665544
No 179
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=34.34 E-value=35 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 46 ~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 46 DNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHhCCChhHEEEEEC
Confidence 34566677778999999998884
No 180
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=34.03 E-value=49 Score=20.02 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=25.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKP 35 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (114)
.|.+.+......++.+...+.+.+.+...+..|-+
T Consensus 78 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 112 (138)
T 2yz0_A 78 APEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQE 112 (138)
T ss_dssp CCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 38888877666766667777778877777766654
No 181
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=33.94 E-value=18 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCC-ccccc
Q 033640 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKASH-FNFLV 112 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~-~g~~g 112 (114)
|++...-.-++| +.||++++||.- .+| |..+|
T Consensus 163 K~eai~~~~e~l-~~~g~~~~~i~~------~dnfW~~gG 195 (739)
T 2ztg_A 163 KNETVAYCTELL-NELGVKKEDIVY------KEEPWAGGG 195 (739)
T ss_dssp HHHHHHHHHHHH-HHHTCCGGGCEE------EEEEEEETT
T ss_pred HHHHHHHHHHHH-HHhCCCHHHeee------ccCcccCCC
Confidence 344455555677 779999999853 245 76655
No 182
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=33.69 E-value=39 Score=19.20 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+.+++..|||+++..+.|.
T Consensus 47 lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 47 LKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHCCChhhEEEEEC
Confidence 555566778999999998884
No 183
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=33.57 E-value=22 Score=23.31 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=17.8
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++++.+.+.-+.+-++. +.+|++.++|++.
T Consensus 129 R~~e~~~e~le~F~~~~-~~~Gl~~e~Ii~~ 158 (192)
T 3bx6_A 129 DKPETTKEQLGEFYEAL-DCLRIPKSDVVYT 158 (192)
T ss_dssp SSSCCCTTTTHHHHHHH-HHHTCCGGGCEEC
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCCHHHEEEc
Confidence 44444433334344443 7789999998764
No 184
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=33.38 E-value=94 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHhCCCccEEEEEE
Q 033640 16 DTSSILSEATSTVANIIGKPEAYVMIVL 43 (114)
Q Consensus 16 ~~~~~~~~l~~~~a~~~~kp~~~i~v~~ 43 (114)
...+|...+++++|+.+++| .|+....
T Consensus 95 ~~~D~a~rlAkiLarR~~~P-~YVg~S~ 121 (151)
T 2z5b_A 95 RIRDMARHMATIISERFNRP-CYVTWSS 121 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTSC-EEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhCCC-eEEEeec
Confidence 36789999999999999986 3443333
No 185
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=33.29 E-value=73 Score=19.57 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcC
Q 033640 53 GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 53 g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
|+..--.||+|....+-+...+.+ +-++|++|.+.|+
T Consensus 74 ~~e~~~~fIQi~LP~~AThGDKgK-ANEfckfLAK~l~ 110 (126)
T 1t6a_A 74 RTAGEETFIDIALPPGATHGDKGK-ANEFSKWLAKTLG 110 (126)
T ss_dssp EEETTEEEEEEECCTTCCHHHHHH-HHHHHHHHHHHHC
T ss_pred cccCCcceEEEECCCCCCcCcchh-HHHHHHHHHHHhh
Confidence 444334688888777776555433 2336666665553
No 186
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=33.27 E-value=54 Score=19.12 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+++++..+.|.
T Consensus 59 ~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 59 ENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp HHHHHHHHHHHCCCTTTEEEEET
T ss_pred HHHHHHHHHHHCcCcccEEEEEC
Confidence 44666677788999999999884
No 187
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=33.21 E-value=79 Score=18.87 Aligned_cols=74 Identities=7% Similarity=-0.068 Sum_probs=40.3
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHh-HHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVN-KKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~-~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+++.|+.++..-.+.++ ++.+. ...|.++-+......+-+... ......+.+++++++|+...+..-.+.-.
T Consensus 23 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~ 97 (152)
T 2ogg_A 23 ELIQKQLRANLDDDIWEVI---RSRKI-DGEHVILDKDYFFRKHVPHLTKEICENSIYEYIEGELGLSISYAQKEIVAE 97 (152)
T ss_dssp HHHHHHHTCCTTCCEEEEE---EEEEE-TTEEEEEEEEEEETTTCCCCCHHHHTSCHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEE---EEEeE-CCcEEEEEeeeeEHHHCCCCCHHHhcCcHHHHHHhhcCccEEEEEEEEEEE
Confidence 4577788876653333332 22222 346766555443322222111 12234588999999999877766665543
No 188
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=32.72 E-value=48 Score=20.20 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=20.9
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCcEEEE
Q 033640 71 PDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+.-.+-+.++.++|.+. ||+++|+.+.
T Consensus 59 ~~LS~~RA~aV~~~L~~~-Gv~~~ri~~~ 86 (138)
T 3cyp_B 59 YELAANRAYRVMKVLIQY-GVNPNQLSFS 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHc-CCCHHHEEEE
Confidence 444455566788888877 9999999764
No 189
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.46 E-value=33 Score=19.45 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
..+-+.+++..|||+++..+.|..
T Consensus 32 ~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 32 AEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp HHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred HHHHHHHHHHHCCCHHHeEEEEeC
Confidence 346777888899999999998864
No 190
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=32.31 E-value=40 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..+++...+.||||.++|.|...|-+
T Consensus 528 T~~aQiaAe~LGi~~e~V~v~~~DT~ 553 (803)
T 1ffv_B 528 TTYAQIIATELGIPSEVIQVEEGDTS 553 (803)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCBTT
T ss_pred HHHHHHHHHHHCCCHHHEEEecCCCC
Confidence 44777888999999999999998764
No 191
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=32.25 E-value=35 Score=18.09 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
......+.+.+.+.+|++++.+
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i 25 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKV 25 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCHHHC
Confidence 4566778888888899876654
No 192
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.09 E-value=52 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEe
Q 033640 80 AISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
.+...+++.+|+|+.+..+.+.+
T Consensus 37 ~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 37 KVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp HHHHHHHTTTTCCTTTCEEEEEC
T ss_pred HHHHHHHHHHCCChhHeEEEEEc
Confidence 37788889999999999998874
No 193
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.09 E-value=34 Score=19.70 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..||++++..+.|.
T Consensus 35 ~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 35 SNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp HHHHHHHHHHTCCCGGGBCEEET
T ss_pred HHHHHHHHHHHCcChHHeEEEEC
Confidence 34667778889999999988774
No 194
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.02 E-value=31 Score=19.16 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+.+.|++..||+++|..+.|-
T Consensus 24 ~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 24 RELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp HHHHHHHHHHTCCCTTTCCCEES
T ss_pred HHHHHHHHHHhCCCccceEEEeC
Confidence 45777788889999888887763
No 195
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=32.00 E-value=1e+02 Score=19.69 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceee
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMS 50 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~ 50 (114)
.-...++.+.+|++++.|.+.|.|.-.....+-
T Consensus 106 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LG 138 (152)
T 1iv3_A 106 GPHRKALVDSLSRLMRLPQDRIGLTFKTSEGLA 138 (152)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTSS
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEecCCCCC
Confidence 556789999999999999999999888766664
No 196
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Probab=31.75 E-value=92 Score=19.19 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHh-HHH-HHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVN-KKL-SAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~-~~~-~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+|+.|+.++..-.+.++ ++.+. ...|.++-.......+-+... ..+ ...+.+++++.+|++..+..-.+.-.
T Consensus 44 ~~ia~~L~l~~g~~v~~i~---Rlr~~-dg~P~~~e~~ylp~~~~~~l~~~~~~~~sly~~l~~~~g~~i~~~~~~i~a~ 119 (173)
T 2ikk_A 44 KPIAEKLQIQPESPVVELK---RILYN-DDQPLTFEVTHYPLDLFPGIDTFIADGVSMHDILKQQYKVVPTHNTKLLNVV 119 (173)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEES-SSSEEEEEEEEEETTTSTTGGGGCCTTCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEE---EEEee-CCccEEEEEEeeeHhHCCCcchhhccCCcHHHHHHHHhCCCeEEEEEEEEEE
Confidence 4577888876654334343 23333 457877666554433322221 112 23588899999999888776666544
No 197
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=31.22 E-value=37 Score=18.32 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
....+.+.+.+.+.+|++++.+
T Consensus 4 ~~i~~~l~~ii~~~l~~~~~~i 25 (81)
T 3gzm_A 4 KSTFDDIKKIISKQLSVEEDKI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHhCcCHHHC
Confidence 4456778888888889887654
No 198
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=31.14 E-value=32 Score=18.60 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
....+.+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~ii~~~l~~~~~~i 27 (82)
T 2qnw_A 6 RPLLERVKDVVADQLGVDRARI 27 (82)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHCCCHhhC
Confidence 4566778888888888876654
No 199
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=30.66 E-value=1.1e+02 Score=22.10 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.2
Q ss_pred eeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 65 SIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
-+++.+.++.-++++.+.+.+.++|+||
T Consensus 94 Pl~~~tmeec~~lA~~~g~~i~~~l~VP 121 (325)
T 1qd1_A 94 PVRGVTMDECVRCAQAFGQRLAEELGVP 121 (325)
T ss_dssp EEESCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred eCCCCCHHHHHHHHHHHHHHHhhhcCCc
Confidence 3457899999999999999999999998
No 200
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.61 E-value=34 Score=19.24 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.|-+.+++..|+++++..+.|.
T Consensus 41 ~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 41 RFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp HHHHHHHHHTCSCTTTBCCEET
T ss_pred HHHHHHHHHhCCCHHHEEEEEC
Confidence 3566667788999999888774
No 201
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=30.38 E-value=1.5e+02 Score=21.73 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=34.5
Q ss_pred CCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 56 ~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
++ +.+-|...|+.+..+---++..+.+.| ++.||...|.|+
T Consensus 286 d~-v~vLVNgLG~T~~~El~iv~~~v~~~L-~~~gi~v~r~~v 326 (366)
T 1oi2_A 286 DR-VIALVNNLGATPLSELYGVYNRLTTRC-QQAGLTIERNLI 326 (366)
T ss_dssp CE-EEEEEEECBSCCHHHHHHHHHHHHHHH-HHHTCEEEEEEE
T ss_pred Ce-EEEEEECCCCccHHHHHHHHHHHHHHH-HHCCCeEEEEee
Confidence 44 557788899999888888999999999 678999999886
No 202
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=30.23 E-value=40 Score=24.43 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=31.6
Q ss_pred EEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccccc
Q 033640 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLV 112 (114)
Q Consensus 61 v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g 112 (114)
+.++.++....- .-+..++.+.+.+.||++.++|.|.-+-. +..||-|
T Consensus 303 ~d~~~~~~~pk~--~~~~~~~~~~~~~~~~~~~~~v~~ka~t~--e~lg~~g 350 (371)
T 1w55_A 303 IDICVMAQSPKL--KDFKQAMQSNIAHTLDLDEFRINVKATTT--EKLGFIG 350 (371)
T ss_dssp EEEEEECSSSCC--GGGHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred EeEEEEeCCCCc--hhHHHHHHHHHHHHhCCCcceEEEEEecC--CCCCcCC
Confidence 445555543211 22345677788888899999999998876 5666654
No 203
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=30.14 E-value=1.2e+02 Score=20.41 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=28.6
Q ss_pred eeecCCCCCeeEEEEEeeeC-------CChHHhHHHHHHHHHHHHhhcC
Q 033640 49 MSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 49 m~~gg~~~p~~~v~l~~~~~-------~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
...-.+.-|+++||+-.+-. .+++-.++++++|++-+.+-++
T Consensus 177 ~VLr~t~mPaVLVE~GFisN~~d~~~L~~~~~q~kiA~aIa~GI~~Yf~ 225 (234)
T 3ne8_A 177 QVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAE 225 (234)
T ss_dssp GGGCCSSSCEEEEESCCTTSHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeecCCCCEEEEEeccCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHh
Confidence 34446778999999865532 2566667788888877766553
No 204
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=30.09 E-value=52 Score=19.39 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+|+++..+.|.
T Consensus 33 ~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 33 DNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 34666677788999999999874
No 205
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=30.08 E-value=1.3e+02 Score=20.44 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEe--eeCCChHHhHHHHHHHHHHHHhhcCCCCCc
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVS--IGGLNPDVNKKLSAAISAILEKKLSVPKSR 95 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~--~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~r 95 (114)
++..+++.+.+.+..|.-. +++ .+...-| |..+++++. -+..+.++-.+..+++.+.++++++. .+
T Consensus 205 ~~~~~~i~~~i~~~~~V~~------v~~-l~~~~~G---~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~ 272 (283)
T 3h90_A 205 DEERQEIIDIVTSWPGVSG------AHD-LRTRQSG---PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SD 272 (283)
T ss_dssp HHHHHHHHHHHHHSSSCSE------EEE-EEEEEET---TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CE
T ss_pred HHHHHHHHHHHhcCCCccc------cee-eEEEEEC---CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--Ce
Confidence 4566777777766544311 111 1111123 234566654 34466677788889999999988876 67
Q ss_pred EEEEEEeCC
Q 033640 96 FFIKFYDTK 104 (114)
Q Consensus 96 i~I~f~~~~ 104 (114)
+.|.+++.+
T Consensus 273 v~ih~ep~~ 281 (283)
T 3h90_A 273 VIIHQDPCS 281 (283)
T ss_dssp EEEEEECSC
T ss_pred EEEEeccCC
Confidence 999888764
No 206
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=29.94 E-value=40 Score=18.22 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
......+.+.+.+.++++++.+
T Consensus 8 ~~i~~~l~~~i~~~l~~~~~~i 29 (84)
T 2kwl_A 8 DEIFSKVRSIISEQLDKKEDEI 29 (84)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCcccC
Confidence 4566778888888888876654
No 207
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=29.58 E-value=61 Score=19.69 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=16.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|..+.+. .+.+.+.+.+++.
T Consensus 71 ~~lrIqT~~~~~p--~eaL~~a~~~L~~ 96 (120)
T 1twf_K 71 FKLRIQTTEGYDP--KDALKNACNSIIN 96 (120)
T ss_dssp EEEEEEECTTCCH--HHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 5789999876553 3566666555543
No 208
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=29.50 E-value=54 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 59 ~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 59 ENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCChHHEEEEEC
Confidence 34556666778999999999885
No 209
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=29.41 E-value=31 Score=18.49 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
.+..+.+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~~l~~~l~~~~~~i 27 (81)
T 1f80_D 6 ADTLERVTKIIVDRLGVDEADV 27 (81)
T ss_dssp CHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCHHhC
Confidence 3456778888889999887654
No 210
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator, UTRA, DNA-bindin transcription regulation; 1.90A {Mycobacterium smegmatis}
Probab=29.41 E-value=1.1e+02 Score=19.54 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhH--HHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNK--KLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~--~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+|+.|+.++..-.+.++ ++.+. ...|.++-+......+-++..+ .+...+.+++++. |++..+..-.+.-.
T Consensus 67 ~~ia~~L~l~~g~~v~~i~---Rlr~~-dg~Pv~~e~~ylp~~~~p~l~~~~~~~~Sly~~L~~~-g~~i~~~~~~i~a~ 141 (201)
T 3f8l_A 67 EVLAGVLGVDVGAPVLQLE---RVLTT-DGVRVGLETTKLPAQRYPGLRETFDHEASLYAEIRSR-GIAFTRTVDTIDTA 141 (201)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEEE-TTEEEEEEEEEEEGGGSTTHHHHCCTTSCHHHHHHHT-TCCCCEEEEEEEEE
T ss_pred HHHHHhcCcCCCCeEEEEE---EEEEE-CCEEEEEEEEEEeHHHCCChhhcccccCcHHHHHHhC-CCceEEEEEEEEEE
Confidence 3567778876654333333 22332 4578766655544333232222 2345689999999 99988877777655
Q ss_pred CC
Q 033640 104 KA 105 (114)
Q Consensus 104 ~~ 105 (114)
.+
T Consensus 142 ~a 143 (201)
T 3f8l_A 142 LP 143 (201)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 211
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.39 E-value=64 Score=19.41 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..|-+.+++..||++++..+.|.
T Consensus 55 ~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 55 QQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp HHHHHHHHHHHCSCSSSEEEEET
T ss_pred HHHHHHHHHHHCcCcceEEEEEC
Confidence 34666677788999999999874
No 212
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=29.36 E-value=60 Score=19.73 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHhHHH----HHHHHHHHHhhcCCCCCcEEEE
Q 033640 72 DVNKKL----SAAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 72 ~~~~~~----~~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
+.|.++ +.++.++|.+. ||+++|+.+.
T Consensus 77 ~~N~~LS~~RA~aV~~~L~~~-Gi~~~ri~~~ 107 (134)
T 2aiz_P 77 EYNIALGQRRADAVKGYLAGK-GVDAGKLGTV 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHEEEE
Confidence 445555 55777888765 9999999765
No 213
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.28 E-value=45 Score=18.86 Aligned_cols=25 Identities=4% Similarity=0.014 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 72 DVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 72 ~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
-.+.++.+.+.+.+.+.++++++.+
T Consensus 11 m~~~~i~~~l~~~l~~~l~~~~~~i 35 (99)
T 2dnw_A 11 LTLEGIQDRVLYVLKLYDKIDPEKL 35 (99)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCTTTC
T ss_pred CCHHHHHHHHHHHHHHHhCCCHhhC
Confidence 3456677889999999999987765
No 214
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=28.66 E-value=37 Score=19.02 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=14.2
Q ss_pred hHHhHHHHHHHHHHHHhhc
Q 033640 71 PDVNKKLSAAISAILEKKL 89 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~L 89 (114)
...|++++.+|.++|++.+
T Consensus 4 ~~~~K~la~sIi~FL~~~~ 22 (74)
T 2lxb_A 4 SASKEEIAALIVNYFSSIV 22 (74)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhc
Confidence 3446778888888887765
No 215
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=28.50 E-value=54 Score=19.41 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 56 L~~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 56 LMEAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHhCCCcccEEEEEC
Confidence 556667788999999999884
No 216
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=28.36 E-value=69 Score=18.73 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=16.3
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+-+.+++..|+|+++..+.|.
T Consensus 61 LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 61 IKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp HHHHHHHHSSCCTTTEEEEET
T ss_pred HHHHHHHHHCCChHHEEEEEC
Confidence 445566778999999999883
No 217
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=28.24 E-value=56 Score=19.17 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHhhcCCCCCcEEEEEEe
Q 033640 81 ISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+++.+.+..|++++++...|..
T Consensus 46 L~~aYc~r~gv~~~sirFlfDG 67 (95)
T 2l76_A 46 VVDHMATHLGVSPSRILLLFGE 67 (95)
T ss_dssp HHHHHHHHHTSCGGGEEEEETT
T ss_pred HHHHHHhhcCCChhhEEEEECC
Confidence 6666778889999999999854
No 218
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=28.17 E-value=89 Score=18.76 Aligned_cols=29 Identities=3% Similarity=0.096 Sum_probs=19.0
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
++++...+.-+.+.+++ +.+|++.+++..
T Consensus 114 R~~~l~~e~~~~f~~~~-~~~G~~~~~ii~ 142 (151)
T 1e5p_A 114 KGNALTPEENEILVQFA-HEKKIPVENILN 142 (151)
T ss_dssp SSSCCCHHHHHHHHHHH-HHTTCCGGGEEE
T ss_pred cCCCCCHHHHHHHHHHH-HHcCCCHHHEEE
Confidence 45555555555555555 588999999864
No 219
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=28.12 E-value=90 Score=17.91 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 20 ILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 20 ~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~-~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
|...+.+.+.+.+.+ ..+--|.++- +.+ .+-+.|++... +=-..+-+-.+.|...+++.++.+..++.|
T Consensus 8 ~~~~IR~~i~k~l~~-aGis~IeIeR--------~~~-~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I 77 (92)
T 1wh9_A 8 FKAELNEFLTRELAE-DGYSGVEVRV--------TPT-RTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVEL 77 (92)
T ss_dssp HHHHHHHHHHHHTTT-TTEEEEEEEE--------CSS-CEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEE
T ss_pred HHHHHHHHHHHHHHH-CceeeEEEEE--------CCC-eEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEE
Confidence 556777888777765 3333333332 111 23444443211 000113344677888899999988889999
Q ss_pred EEEeCCCCC
Q 033640 99 KFYDTKASH 107 (114)
Q Consensus 99 ~f~~~~~~~ 107 (114)
...++...+
T Consensus 78 ~I~eV~~P~ 86 (92)
T 1wh9_A 78 YAEKVATRG 86 (92)
T ss_dssp EEEECCCSC
T ss_pred EEEEecCCC
Confidence 999987543
No 220
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.97 E-value=64 Score=18.59 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+++++..+.|.
T Consensus 47 ~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 47 FHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp HHHHHHHHHTTCCCSTTCEEEET
T ss_pred HHHHHHHHHHHCcCcccEEEEEC
Confidence 44666777889999999998874
No 221
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Probab=27.89 E-value=60 Score=20.30 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcEE
Q 033640 76 KLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
+-...|++.|.+..||+++||+
T Consensus 106 ~~~~~L~~~l~~~y~i~~~~I~ 127 (159)
T 1yb0_A 106 NNAVDVVRQLMSMYNIPIENVR 127 (159)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHHHHhCCChhhEE
Confidence 3356778888899999998854
No 222
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.50 E-value=73 Score=17.69 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=17.8
Q ss_pred HHHHHHHHhhc--CCCCCcEEEEEE
Q 033640 79 AAISAILEKKL--SVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~L--gi~~~ri~I~f~ 101 (114)
..+-+.+++.. |+++++..+.|.
T Consensus 33 ~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 33 GHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp HHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred HHHHHHHHHHhcCCCChHHeEEEEC
Confidence 34666777777 999999998873
No 223
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=27.49 E-value=21 Score=21.00 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=23.2
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCc
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSR 95 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~r 95 (114)
..++++.++..+.+.+...+++|++.+.
T Consensus 2 ~~t~~~~~~~~~~~~~~C~~e~~v~~~~ 29 (126)
T 1ooh_A 2 HMTMEQFLTSLDMIRSGCAPKFKLKTED 29 (126)
T ss_dssp CCCHHHHHHHHHHHHHTTGGGSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCHHH
Confidence 4678888888888999999999988654
No 224
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=27.47 E-value=79 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+.+++.+.+.+++|+++++|+..-.
T Consensus 200 ~~m~~av~~~l~~~~G~~~~~i~~e~f 226 (252)
T 2gpj_A 200 FNSMRALRRHFKQAHALPKSHFYTSSY 226 (252)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCHHHeEEEEE
Confidence 556777888887789999999987544
No 225
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=27.38 E-value=1.5e+02 Score=21.69 Aligned_cols=41 Identities=7% Similarity=0.185 Sum_probs=31.3
Q ss_pred ChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE---eCCCCCccccccC
Q 033640 70 NPDVNKKLSAAISAILEKKLSVPKSRFFIKFY---DTKASHFNFLVCL 114 (114)
Q Consensus 70 ~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~---~~~~~~~g~~g~~ 114 (114)
++++-.++++.+.+.-. ++ +++++|.|. +-++...||+|++
T Consensus 80 d~e~aleyA~~Lk~~~~-~~---~d~l~iVmR~yfeKPRTs~GwKGli 123 (370)
T 1of8_A 80 DLEAAQEYALRLKKLSD-EL---KGDLSIIMRAYLEKPRTTVGWKGLI 123 (370)
T ss_dssp CHHHHHHHHHHHHHHHH-HH---TTTEEEEEECCCCCCCSSSSCCCTT
T ss_pred CHHHHHHHHHHHHHHHH-hh---ccCeEEEEEeccccccCCccccccc
Confidence 68888888888877654 44 467777776 7888999999974
No 226
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.27 E-value=52 Score=19.04 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..|+++++..+.|.
T Consensus 25 ~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 25 LETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp HHHHHHHHHTTTSCGGGCEEEET
T ss_pred HHHHHHHHHHHCCChhhEEEEEC
Confidence 34666777788999999998875
No 227
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=27.24 E-value=93 Score=20.50 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=27.8
Q ss_pred CCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC
Q 033640 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 56 ~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
+...|+++..-..++++.-+++-+.+-+.+.+.+.|
T Consensus 99 ~~g~y~d~~~~~~~t~edl~~IE~~m~~iI~~~~pi 134 (224)
T 1tke_A 99 DNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDV 134 (224)
T ss_dssp TTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 445688887556689998888888888888877665
No 228
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=27.02 E-value=75 Score=18.46 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEE
Q 033640 76 KLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 76 ~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+-.+.|-+|..+++|.++++|.|
T Consensus 29 rAik~Irkfa~k~m~t~~~dVri 51 (92)
T 1vq8_X 29 KAMILIREHLAKHFSVDEDAVRL 51 (92)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHHHhCCCcccEEE
Confidence 34567899999999999877765
No 229
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=26.82 E-value=82 Score=18.56 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=19.8
Q ss_pred ChHHhHHHHHHHHHHHHhhcCCCCC
Q 033640 70 NPDVNKKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 70 ~~~~~~~~~~~i~~~l~~~Lgi~~~ 94 (114)
....++.-++.|+++| ++||+|..
T Consensus 30 P~sMdESTAKGifKyL-~elGvPas 53 (115)
T 2es9_A 30 PHSMDESTAKGILKYL-HDLGVPVS 53 (115)
T ss_dssp CCHHHHHHHHHHHHHH-HHTTCCCC
T ss_pred CCccchHHHHHHHHHH-HHcCCCCC
Confidence 4567888999999999 78999853
No 230
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=26.64 E-value=50 Score=19.00 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+-+.+++..|+|+++..+.|.
T Consensus 50 V~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 50 VLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp HHHHHHHHHHHHSCCSTTCCEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 344666677778999999988874
No 231
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=26.51 E-value=1e+02 Score=17.95 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=27.4
Q ss_pred EEEeCCCCCCcChHHHHHHHHHHH-HHHhCCCccEEEEEEeC
Q 033640 5 NISTNVKLDGVDTSSILSEATSTV-ANIIGKPEAYVMIVLKG 45 (114)
Q Consensus 5 ~i~tn~~~~~~~~~~~~~~l~~~~-a~~~~kp~~~i~v~~~~ 45 (114)
.++...+.++. .+.+...+.+++ ..+.|...-.+.+.+++
T Consensus 49 ~ltlt~p~cp~-~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p 89 (108)
T 3lno_A 49 TMTMTSIGCPM-AGQIVSDVKKVLSTNVPEVNEIEVNVVWNP 89 (108)
T ss_dssp EECCSCTTCTT-HHHHHHHHHHHHHHHCTTCCCEEEEECCSS
T ss_pred EEEECCCCCcH-HHHHHHHHHHHHHHhCCCCceEEEEEEecC
Confidence 34444444544 678888999998 88888876666666654
No 232
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=26.25 E-value=58 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=17.3
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
++++...+-.+..++..+++||||+
T Consensus 54 l~~~~~~~n~~~af~~Ae~~lgi~~ 78 (109)
T 1bkr_A 54 LKKSNAHYNLQNAFNLAEQHLGLTK 78 (109)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCCCC
T ss_pred cCcCCHHHHHHHHHHHHHHHcCCCc
Confidence 3444555566777788888999974
No 233
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=26.17 E-value=60 Score=17.11 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcCCCCCcE
Q 033640 77 LSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri 96 (114)
..+.+.+.+.+.||++++.+
T Consensus 5 i~~~l~~~~~~~l~~~~~~i 24 (79)
T 2l3v_A 5 TAERVKKIVVEHLGVDADKV 24 (79)
T ss_dssp HHHHHHHHHHHHTCCCSTTC
T ss_pred HHHHHHHHHHHHhCCCHhhC
Confidence 45668888889999887654
No 234
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=26.06 E-value=44 Score=17.31 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhhc
Q 033640 74 NKKLSAAISAILEKKL 89 (114)
Q Consensus 74 ~~~~~~~i~~~l~~~L 89 (114)
|++++..|.++|++.+
T Consensus 2 ~K~la~sIi~FL~~~~ 17 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQL 17 (52)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhc
Confidence 4678888999988775
No 235
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=25.87 E-value=65 Score=19.37 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeec-CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFG-GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g-g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
++.++..+.+.++.-.+++.......|.++.-++-= -...|-. + ....++++...+-.+..++..+++|||++
T Consensus 11 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~l-i---d~~~l~~~~~~~n~~~af~~Ae~~lgi~~ 84 (121)
T 2d88_A 11 SSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDL-I---DFDSLDEQNVEKNNQLAFDIAEKELGISP 84 (121)
T ss_dssp SCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTT-S---CTTTSCTTCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCc-C---CHHHcCccCHHHHHHHHHHHHHHHcCCCC
Confidence 466777777666553355444444445444111000 0012211 1 12234455566667778888888999974
No 236
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=25.85 E-value=76 Score=18.06 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHHHhhcCCCCC-cEEEEEE
Q 033640 82 SAILEKKLSVPKS-RFFIKFY 101 (114)
Q Consensus 82 ~~~l~~~Lgi~~~-ri~I~f~ 101 (114)
.+.+.+.-||+++ +|+..|.
T Consensus 36 i~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 36 IKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp HHHHHHHHTCCCCTTCEEEET
T ss_pred HHHHHHHcCCCcCceEEEEEc
Confidence 3334456699998 9999884
No 237
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.80 E-value=42 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+++..||+++|..+.|.
T Consensus 31 ~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 31 MVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp HHHHHHHHHHTCCCTTTSCCEET
T ss_pred HHHHHHHHHHHCcCHHHeEEEEC
Confidence 44667778888999999888773
No 238
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=25.78 E-value=1.1e+02 Score=20.90 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGS 46 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~ 46 (114)
..++.+++.+.+.+.++ ...++|+++|.
T Consensus 253 ~~~i~~~i~~~l~~~~~--~~~v~ih~ep~ 280 (283)
T 3h90_A 253 AHMVADQVEQAILRRFP--GSDVIIHQDPC 280 (283)
T ss_dssp HHHHHHHHHHHHHHHST--TCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHCC--CCeEEEEeccC
Confidence 45777888888877765 36799999874
No 239
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=25.55 E-value=1.4e+02 Score=19.29 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC-eeEEEEEe
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP-AAYGELVS 65 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p-~~~v~l~~ 65 (114)
.-...++.+.+|++++.| |.|.-.....+-|-|..+- +++..+..
T Consensus 111 ~p~~~~m~~~ia~~L~~~---V~vKAtT~E~LGf~Gr~EGIaa~Av~ll 156 (165)
T 2uzh_A 111 GPRREEAQQVLSELVGAP---VSVSATTTDGLGLTGRGEGLAAIATALV 156 (165)
T ss_dssp GGGHHHHHHHHHHHHTSC---EEEEEECCTTCHHHHTTSEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCC---EEEEEecCCCCCcccCCCceEEEEEEEE
Confidence 557778999999999986 7777777778887776643 44444443
No 240
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=25.49 E-value=43 Score=14.32 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhCC
Q 033640 20 ILSEATSTVANIIGK 34 (114)
Q Consensus 20 ~~~~l~~~~a~~~~k 34 (114)
-.++++.++++++.|
T Consensus 7 kakevssalskvlsk 21 (26)
T 2ibf_B 7 KAKEVSSALSKVLSK 21 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 346777777777765
No 241
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=25.35 E-value=37 Score=19.72 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=22.1
Q ss_pred ChHHhHHHHHHHHHHHHhhcCCCCCcE
Q 033640 70 NPDVNKKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 70 ~~~~~~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
|.++-++..+.+.+...+++||+.+.+
T Consensus 2 T~eq~~~~~~~~~~~C~~e~gv~~e~i 28 (120)
T 3v2l_A 2 TVEQMMKSGEMIRSVCLGKTKVAEELV 28 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhhhhhCcCHHHH
Confidence 567778888889999999999987654
No 242
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.23 E-value=26 Score=24.92 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=13.9
Q ss_pred HHHHhhcC--CC---CCcEEEEEEeCCCCCcc
Q 033640 83 AILEKKLS--VP---KSRFFIKFYDTKASHFN 109 (114)
Q Consensus 83 ~~l~~~Lg--i~---~~ri~I~f~~~~~~~~g 109 (114)
++.++.|| |. .+++-+.|+.+++.||.
T Consensus 227 ~~~~~~LGl~ie~~~~d~lkf~F~~id~~d~~ 258 (315)
T 2ve7_A 227 DLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPE 258 (315)
T ss_dssp HHHHHHSCCCCC----------CCCC---CCC
T ss_pred HHHHHHcceEEEeccCCeEEEEEEecCCCCCC
Confidence 78889999 33 58899999999998884
No 243
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=25.21 E-value=78 Score=25.89 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=23.7
Q ss_pred HHHHHHHhhc---CCCCCcEEEEEEeCC--CCCccccc
Q 033640 80 AISAILEKKL---SVPKSRFFIKFYDTK--ASHFNFLV 112 (114)
Q Consensus 80 ~i~~~l~~~L---gi~~~ri~I~f~~~~--~~~~g~~g 112 (114)
.++....+.| |||.++|.|...|-+ |..+|..|
T Consensus 662 ~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~g 699 (907)
T 1dgj_A 662 GSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGG 699 (907)
T ss_dssp HHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCT
T ss_pred HHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCcc
Confidence 3566666777 999999999998875 34444433
No 244
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=25.09 E-value=55 Score=19.42 Aligned_cols=20 Identities=5% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcCCCCCcE
Q 033640 77 LSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 77 ~~~~i~~~l~~~Lgi~~~ri 96 (114)
....+.+.+.+.+|+++++|
T Consensus 15 I~~~V~~ilaE~lev~~e~V 34 (102)
T 2l9f_A 15 ALELVRHLVAERAELPVEVL 34 (102)
T ss_dssp HHHHHHHHHHHHTTSCSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHc
Confidence 44568888999999998875
No 245
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=25.01 E-value=76 Score=18.43 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 52 Lm~aY~~~~g~~~~~vrF~FD 72 (97)
T 2jxx_A 52 LMSHYEEAMGLSGRKLSFFFD 72 (97)
T ss_dssp HHHHHHHHTTCSSSCCEEEET
T ss_pred HHHHHHHHHCCCcccEEEEEC
Confidence 566667788999999888884
No 246
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=24.67 E-value=1.6e+02 Score=21.26 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDP 57 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p 57 (114)
.-...++.+.+|+.++.|.+.|.|.-.....+-|-|..+-
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~v~~ka~t~e~lg~~g~~~~ 354 (371)
T 1w55_A 315 KDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEG 354 (371)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSE
T ss_pred hhHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcCCCCCc
Confidence 5567889999999999999999999998888888887753
No 247
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=24.57 E-value=1.2e+02 Score=20.69 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=26.8
Q ss_pred eeEEEEEe--ee-CCChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 58 AAYGELVS--IG-GLNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 58 ~~~v~l~~--~~-~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
+.+|-.+. -| ..+.+.+.++.+.+.+.+. +.||+++||++
T Consensus 117 ~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~-~~Gi~~~~Iil 159 (262)
T 1f6y_A 117 AALIGLTMNKTGIPKDSDTRLAFAMELVAAAD-EFGLPMEDLYI 159 (262)
T ss_dssp CEEEEESCCSSCSCSSHHHHHHHHHHHHHHHH-HHTCCGGGEEE
T ss_pred CcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCcccEEE
Confidence 34455554 22 2456677777777777774 78999999876
No 248
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=24.40 E-value=89 Score=18.61 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHhHHHH----HHHHHHHHhhcCCCCCcEEEE
Q 033640 72 DVNKKLS----AAISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 72 ~~~~~~~----~~i~~~l~~~Lgi~~~ri~I~ 99 (114)
+.|.+++ .++.++|.+ .||+++|+.+.
T Consensus 71 ~~N~~LS~~RA~aV~~~L~~-~Gi~~~ri~~~ 101 (129)
T 2kgw_A 71 GINIPLSAQRAKIVADYLVA-RGVAGDHIATV 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHHHEEEE
Confidence 4444444 467777766 49999998764
No 249
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=24.23 E-value=49 Score=19.71 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 52 L~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 52 LIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp HHHHHHHHHTCCSSSCEEESS
T ss_pred HHHHHHHHhCCCcccEEEEEC
Confidence 566667788999999888874
No 250
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=23.91 E-value=1.5e+02 Score=19.17 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCeeEEEEEe------eeCCChHHhHHHHHHHHHHHHhhcCCC-CCcEEEEEE
Q 033640 56 DPAAYGELVS------IGGLNPDVNKKLSAAISAILEKKLSVP-KSRFFIKFY 101 (114)
Q Consensus 56 ~p~~~v~l~~------~~~~~~~~~~~~~~~i~~~l~~~Lgi~-~~ri~I~f~ 101 (114)
+|.+-+.|.+ .|..+.++-+.-.+.+.+.+++ +|++ ....-+..+
T Consensus 52 ~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~~L~~-lG~~~~~~~~~~I~ 103 (182)
T 1ais_A 52 DPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKS-IGVKFKRAPQIDVQ 103 (182)
T ss_dssp SSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH-TTCCCSSSCEEEEE
T ss_pred CCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHH-cCCCcccccceEEE
Confidence 4555555543 3457888888888888998855 8987 333334434
No 251
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=23.89 E-value=62 Score=18.80 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+-+.+++..|||+++..+.|.
T Consensus 57 LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 57 LKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp HHHHHHHHTTCCTTTSEEECS
T ss_pred HHHHHHHHHCCCHHHeEEEEC
Confidence 555666778999999999884
No 252
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=23.87 E-value=1.2e+02 Score=17.88 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=26.2
Q ss_pred EEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
-+.+.+..+++..++..+.+.+.+..++.+|-+
T Consensus 77 ~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (128)
T 2day_A 77 QISIRNPRGLSDEQIHTILQVLGHVAKAGLGTA 109 (128)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 355666677999999999999999888887754
No 253
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=23.55 E-value=51 Score=19.67 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeec-CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCC
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFG-GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g-g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~ 93 (114)
++.++..+.+.+..--+++.......|.++.-++-= -...|- ++. ...++++...+-.+..++..+++|||++
T Consensus 9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~-lid---~~~l~~~~~~~n~~~af~~Ae~~lgi~~ 82 (116)
T 1wyl_A 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPG-LLE---PSELQGLGALEATAWALKVAENELGITP 82 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTT-SCC---CSSGGGCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcC-CCC---HHHhccCCHHHHHHHHHHHHHHHcCCcc
Confidence 578888888877765466555554455544211000 001222 112 2234445566667777888888999974
No 254
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=23.46 E-value=93 Score=18.74 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++.+.+.+.|.
T Consensus 66 Lm~aY~er~Gl~~~~irFlFD 86 (115)
T 3kyd_D 66 LKESYCQRQGVPMNSLRFLFE 86 (115)
T ss_dssp HHHHHHHHHTCCTTSEEEEET
T ss_pred HHHHHHHHhCCChhhEEEEEC
Confidence 556666777999999999885
No 255
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=23.46 E-value=78 Score=18.45 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcE
Q 033640 75 KKLSAAISAILEKKLSVPKSRF 96 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri 96 (114)
..+...+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~il~~~l~~~~~~i 27 (115)
T 1klp_A 6 EEIIAGIAEIIEEVTGIEPSEI 27 (115)
T ss_dssp HHHHHHHHHHHHHHTCCCTTTC
T ss_pred HHHHHHHHHHHHHHhCcCHHhC
Confidence 4567788899999999987664
No 256
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=23.42 E-value=68 Score=17.08 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 033640 75 KKLSAAISAILEKKLSVPKS 94 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ 94 (114)
....+.+.+.+.+.||++++
T Consensus 3 ~~i~~~l~~i~~~~l~~~~~ 22 (82)
T 2ava_A 3 KETIDKVSDIVKEKLALGAD 22 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 34566788888888888765
No 257
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=23.41 E-value=1.2e+02 Score=18.53 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=19.1
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
++++...+.-+.+.+++ +.+|++.+++..
T Consensus 122 R~~~~~~~~~~~f~~~~-~~~G~~~~~i~~ 150 (162)
T 3kff_A 122 RKADLNSDIKEKFVKLC-EEHGIIKENIID 150 (162)
T ss_dssp SSSCCCHHHHHHHHHHH-HHTTCCGGGEEE
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCCHHHEEE
Confidence 55555555555555554 678999999864
No 258
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=23.34 E-value=60 Score=26.03 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..++....+.||||.++|.|...|-+
T Consensus 512 T~~aQiaAe~LGip~~~V~v~~~DT~ 537 (788)
T 1t3q_B 512 TTLAQIAADVLGVPASDVVIQAGSTK 537 (788)
T ss_dssp HHHHHHHHHHHTSCGGGEEEECSBTT
T ss_pred HHHHHHHHHHHCCCHHHEEEecCCCC
Confidence 34777888999999999999988765
No 259
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=23.30 E-value=12 Score=22.85 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++.| =++|||+++|.+-|++.
T Consensus 80 Ia~eL-v~~GVpk~dIVLgF~~P 101 (112)
T 2nlv_A 80 PAEEL-VMMGVPREDIVLGLQAP 101 (112)
T ss_dssp HHHHH-HHTTCCGGGEEETTSCG
T ss_pred HHHHH-HHcCCCHHHEEEccCCc
Confidence 44444 24699999999998865
No 260
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=23.29 E-value=92 Score=21.26 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCCCCcEEEE
Q 033640 80 AISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 80 ~i~~~l~~~Lgi~~~ri~I~ 99 (114)
++.+.+.++.||+++||++.
T Consensus 143 ~~i~~~~~~~~id~~ri~l~ 162 (285)
T 4fhz_A 143 AFLDERLAEEGLPPEALALV 162 (285)
T ss_dssp HHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHhCCCccceEEE
Confidence 44455567789999999985
No 261
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.26 E-value=78 Score=18.98 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+.+.+++..|+|+++..+.|.
T Consensus 24 ~~lK~~i~~~~gip~~~q~L~~~ 46 (152)
T 3b08_A 24 ENVKAKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChHHeEEEEC
Confidence 34556677778999999998874
No 262
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, bordet bronchiseptica, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=23.19 E-value=1.3e+02 Score=18.02 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHH-hHHHH---HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDV-NKKLS---AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~-~~~~~---~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..+++.++.++..-.+.++ ++++. ...|.++-+......+-+.. ...+. ..+.+++++++|++..+..-.+.
T Consensus 33 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~~~~sly~~l~~~~g~~~~~~~~~i~ 108 (162)
T 3cnv_A 33 AEIARALELRAGETVVTIR---RQLSM-NHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLR 108 (162)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEES-SSSEEEEEEEEEEGGGCTTCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEE---EEEEe-CCceEEEEEEEEeHHHcCccchhhhhhccchHHHHHHHHcCCceEEEEEEEE
Confidence 4567888877664444443 23332 45787765554433222222 12333 35889999999998777665555
Q ss_pred eC
Q 033640 102 DT 103 (114)
Q Consensus 102 ~~ 103 (114)
-.
T Consensus 109 a~ 110 (162)
T 3cnv_A 109 AV 110 (162)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 263
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=23.17 E-value=1e+02 Score=19.21 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=20.8
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
|+++...+.-+.+.+++ +.+|++.+++..
T Consensus 122 R~~~~~~e~~~~f~~~~-~~~Gl~~~~i~~ 150 (170)
T 3l4r_A 122 RDLSRQQDFLPAFESVC-EDIGLHKDQIVV 150 (170)
T ss_dssp SCGGGTTTTHHHHHHHH-HHTTCCGGGEEE
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCCHHHEEE
Confidence 66666666666666665 678999999863
No 264
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.15 E-value=37 Score=19.97 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCCCcEEEEEE
Q 033640 81 ISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
|.+.+.+..|++++.+.+.|.
T Consensus 50 L~~~y~ek~gi~~~~~rf~Fd 70 (104)
T 1wz0_A 50 LMKAYCERQGLSMRQIRFRFD 70 (104)
T ss_dssp HHHHHHHHHTCCTTTSCEESS
T ss_pred HHHHHHHHhCCCcceEEEEEC
Confidence 666677888999999888874
No 265
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=23.12 E-value=67 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCC
Q 033640 79 AAISAILEKKLSVPKSRFFIKFYDTK 104 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~~~~ 104 (114)
..++....+.||||.++|.|...|-+
T Consensus 534 T~~aQiaAe~LGip~e~V~v~~~DT~ 559 (809)
T 1n62_B 534 TTYAQIIATELGIPADDIMIEEGNTD 559 (809)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCBTT
T ss_pred HHHHHHHHHHhCCCHHHEEEecCCCC
Confidence 34777888999999999999998764
No 266
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=23.10 E-value=1.1e+02 Score=17.40 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=23.6
Q ss_pred EEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEE
Q 033640 5 NISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIV 42 (114)
Q Consensus 5 ~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~ 42 (114)
.++...+.++. .+.+...+.+++..+.|...-.+.+.
T Consensus 47 ~l~lt~~~cp~-~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 47 LMTMTTPMCPL-AGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp EECCSSSCCSS-HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred EEEECCCCCcH-HHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 34444445554 68888889888887777655444433
No 267
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=23.00 E-value=83 Score=18.84 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKP 35 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (114)
|.+.+......++.+...+.+.+.+...+..|-+
T Consensus 80 P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 113 (137)
T 1ukx_A 80 PEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEV 113 (137)
T ss_dssp CCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSC
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 6777755445555656777778877777766654
No 268
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=22.92 E-value=1.7e+02 Score=19.83 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=55.1
Q ss_pred cChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeee--------------c---CCCCCeeEEEEEeeeC-----CChH
Q 033640 15 VDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSF--------------G---GTEDPAAYGELVSIGG-----LNPD 72 (114)
Q Consensus 15 ~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~--------------g---g~~~p~~~v~l~~~~~-----~~~~ 72 (114)
.+.++-...++.-+.+..||..-++.|.+.|+..+.- | |-..|-..+.....|. .+..
T Consensus 61 ~qIEAARia~nRyl~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArVk~Gqilfei~g~~ 140 (219)
T 3j0l_J 61 EALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKD 140 (219)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEECTTCEESCCCCCG
T ss_pred HHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecC
Confidence 3345555677777877788876678777776633332 1 2336666665555553 2345
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCccc
Q 033640 73 VNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110 (114)
Q Consensus 73 ~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~ 110 (114)
++++.+++....-...|.++. +|.++ ..|||
T Consensus 141 ~~~~~A~eALr~A~~KLP~~t-kiv~~------~kwgf 171 (219)
T 3j0l_J 141 SNKDVVVEGLRRARYKFPGQQ-KIILS------KKWGF 171 (219)
T ss_dssp GGHHHHHHHHHHHHHSSSCCC-CCEEC------CCSSS
T ss_pred cCHHHHHHHHHHHhhhCCCCe-EEEEe------cccCc
Confidence 677788877777777777654 44432 67887
No 269
>3hfi_A Putative regulator; structural geonomics, PSI, MCSG, structural genom protein structure initiative, midwest center for structural genomics; 2.20A {Escherichia coli O6}
Probab=22.82 E-value=1.4e+02 Score=18.26 Aligned_cols=74 Identities=11% Similarity=-0.009 Sum_probs=42.3
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhH-HHH-HHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNK-KLS-AAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~-~~~-~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+|+.++.++..-.+.++ ++.+. ...|.++.+......+-+...+ .+. .-+.+++++++|+...+..-.+.-.
T Consensus 38 ~~ia~~L~l~~g~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~~Sly~~l~~~~g~~i~~~~~~i~a~ 113 (170)
T 3hfi_A 38 RYVAEKLRITPGQDILYLE---RLRSI-GDEKAMLIENRINIELCPGIVEIDFNQHNLFPTIESLSKRKIRYSESRYAAR 113 (170)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEES-SSSEEEEEEEEECGGGSTTGGGCCTTTSCHHHHHHHHHTCCCCEEEEEEEEE
T ss_pred HHHHHhcCcCCCCEEEEEE---EEEEE-CCceEEEEEEEcCHHHCCCcchhhcccCcHHHHHHHHhCCCcceeEEEEEEE
Confidence 4577888877654333333 23332 4578776665543322222111 222 3588899999999888776666543
No 270
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=22.80 E-value=2e+02 Score=20.11 Aligned_cols=65 Identities=11% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCC--CCeeEEEEEeeeC--CChHHhHHHHHHHHHHHHh
Q 033640 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTE--DPAAYGELVSIGG--LNPDVNKKLSAAISAILEK 87 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~--~p~~~v~l~~~~~--~~~~~~~~~~~~i~~~l~~ 87 (114)
.+++.+-+.+.+....+.. .-|+++-- .+|.++ .|+.||||-|.-. .+++.-+.++++|.+.+..
T Consensus 115 ~~~~~~L~~l~~~~~~~~~-fev~~EAT---HHGPt~~~~Ps~FVEIGSte~eW~d~~a~~~vA~av~~~l~~ 183 (282)
T 1yqe_A 115 QTMKNYVLALRERLDRKPE-FEFTMEVT---HHGPSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIRA 183 (282)
T ss_dssp HHHHHHHHHHHTTGGGSTT-CEEEECCS---CSSCCCCCSCEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCC-cEEEEEcc---ccCCCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcc
Confidence 4556666777665433555 55556532 235443 6999999988753 6788878888888887763
No 271
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.76 E-value=5.3 Score=22.31 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=23.0
Q ss_pred CChHHhHHHHHHHHH-----------HHHhhcCCCCCcEEEEEEe
Q 033640 69 LNPDVNKKLSAAISA-----------ILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~-----------~l~~~Lgi~~~ri~I~f~~ 102 (114)
++.++-..+=.++.+ .|.+++|++...|-|.|++
T Consensus 14 ~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQN 58 (71)
T 1wi3_A 14 ISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQN 58 (71)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcc
Confidence 455555555444444 6889999999888777653
No 272
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=22.67 E-value=75 Score=18.03 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccE
Q 033640 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAY 38 (114)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~ 38 (114)
|..+.|+.+.-.+ ++ .+.+.+++.++-|..|
T Consensus 1 M~~~~iD~~~i~~---~~----~f~~~~~~~~~~p~~f 31 (90)
T 2cx6_A 1 MNIYTFDFDEIES---QE----DFYRDFSQTFGLAKDK 31 (90)
T ss_dssp CEEEEEETTSCCS---HH----HHHHHHHHHTTCCTTS
T ss_pred CeEEEEeCCCCCC---HH----HHHHHHHHHhCCchhh
Confidence 6666666655443 34 5566677778888766
No 273
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=22.48 E-value=72 Score=20.82 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
..+.+++.+.+. ++|++++||+.
T Consensus 220 ~~m~~~v~~~l~-~~G~~~~~i~~ 242 (243)
T 2eix_A 220 PMMNKAMQGHLE-TLGYTPEQWFI 242 (243)
T ss_dssp HHHHHHHHHHHH-HHTCCGGGEEE
T ss_pred HHHHHHHHHHHH-HcCCCHHHEEe
Confidence 457777888884 78999999985
No 274
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=22.43 E-value=27 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=28.3
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~ 102 (114)
+-|.|.+ ..++..+ +..|.+.+.+++||.++ |-|.|++
T Consensus 158 V~VVVka-~~Ls~~e----aaqI~DIV~r~tgv~~d-V~Vqf~p 195 (197)
T 3tuf_A 158 INITVKS-DKHSKSK----ATAIIDLVAKEIKTMKD-VAVTFEP 195 (197)
T ss_dssp EEEEEEC-SCCCHHH----HHHHHHTSCHHHHTTSE-EEEEEEC
T ss_pred EEEEEeC-CCCCHHH----HHHHHHHHHHhhCCCCc-eEEEeee
Confidence 4455543 4566555 56689999999999988 9999987
No 275
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.09 E-value=27 Score=19.94 Aligned_cols=23 Identities=4% Similarity=0.132 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
..|-+.|++..|||++|..+.|.
T Consensus 40 ~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 40 SELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp HHHHHHHHHHHCSCSTTCCCBSS
T ss_pred HHHHHHHHHHHCcCHHHeEEEEC
Confidence 44677777888999999888753
No 276
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=22.07 E-value=67 Score=19.65 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.6
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
+++++.-+.+...|...+.+.||.
T Consensus 100 gV~p~~f~~~~~~Ll~~l~~~lg~ 123 (153)
T 2bk9_A 100 TVSKESYNQLKGVILDVLTAASSL 123 (153)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCC
Confidence 688888888999999999888884
No 277
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=22.05 E-value=12 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++.| =++|||+++|.+-|++.
T Consensus 80 Ia~eL-v~~GVpk~dIVLgF~~P 101 (112)
T 3d7q_A 80 IALEL-MEMGIDKQDIVIGFHTP 101 (112)
T ss_dssp HHHHH-HTTTCCGGGEEETTSCH
T ss_pred HHHHH-HHcCCCHHHEEEccCCc
Confidence 44444 34699999999988754
No 278
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=21.99 E-value=13 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.384 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeC
Q 033640 81 ISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 81 i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
|++.| =++|||+++|.+-|++.
T Consensus 82 Ia~eL-v~~GVpk~dIVLgF~~P 103 (114)
T 2nwv_A 82 IATEL-MRLGVTNNDIVLAFHPP 103 (114)
T ss_dssp HHHHH-HHTTCCGGGEEETTSCG
T ss_pred HHHHH-HHcCCCHHHEEEccCCc
Confidence 44444 24699999999998865
No 279
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=21.94 E-value=89 Score=18.91 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=18.8
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
++++...+.-+++.+++ +.+|++.+++..
T Consensus 119 R~~~l~~e~~~~f~~~~-~~~G~~~~~i~~ 147 (156)
T 1bj7_A 119 KGTSFTPEELEKYQQLN-SERGVPNENIEN 147 (156)
T ss_dssp SSSCCCHHHHHHHHHHH-HHHTCCGGGEEE
T ss_pred cCCCCCHHHHHHHHHHH-HHcCCCHHHEEe
Confidence 45555555555555555 578999999864
No 280
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.89 E-value=1.3e+02 Score=17.57 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeec
Q 033640 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFG 52 (114)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~g 52 (114)
++.-..++-+++++..|+|-+|..+..-.+......
T Consensus 26 ~~TTC~DVV~aL~~~~G~~~~y~LvE~wRg~ER~L~ 61 (95)
T 2cs4_A 26 EVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLA 61 (95)
T ss_dssp SSSCHHHHHHHHHHHHSCCSEEEEEEEETTEEEECC
T ss_pred CCCcHHHHHHHHHhccCCCccEEEEEecCCCeecCC
Confidence 344566788888888998888877765444444444
No 281
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.83 E-value=1.1e+02 Score=17.15 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=17.4
Q ss_pred HHHHHHH-HhhcCCCCCcEEEEEE
Q 033640 79 AAISAIL-EKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l-~~~Lgi~~~ri~I~f~ 101 (114)
..+-+.+ ++..|+|+++..+.|.
T Consensus 27 ~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 27 LQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp HHHHHHHHHTTSCSSSTTEEEEET
T ss_pred HHHHHHHHHHhcCCChHHEEEEEC
Confidence 3455566 6777999999999884
No 282
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=21.78 E-value=2.3e+02 Score=20.43 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhCC-C-----ccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCC
Q 033640 18 SSILSEATSTVANIIGK-P-----EAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~k-p-----~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi 91 (114)
..|.+.+.+.+.+.+.+ | +..+..+.+. ..+..-...|| ...-..+.++.+.+.||+
T Consensus 167 p~yI~a~a~~I~~~l~~~~~~~~~~~~LlfSaHg-iP~~~~~~GDp----------------Y~~q~~~t~~lv~e~Lg~ 229 (359)
T 3hcn_A 167 HLLIQCFADHILKELDHFPLEKRSEVVILFSAHS-LPMSVVNRGDP----------------YPQEVSATVQKVMERLEY 229 (359)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTGGGCEEEEEEEC-CBHHHHTTTCS----------------HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCcEEEEEcCC-ChHhhcccCCC----------------HHHHHHHHHHHHHHHcCC
Confidence 45677777777666654 1 1134444442 22222112244 233445556777788898
Q ss_pred CCCcEEEEEEeC-CCCCc
Q 033640 92 PKSRFFIKFYDT-KASHF 108 (114)
Q Consensus 92 ~~~ri~I~f~~~-~~~~~ 108 (114)
+ ++..+.|+.- -+.-|
T Consensus 230 ~-~~~~l~~QSr~G~~~W 246 (359)
T 3hcn_A 230 C-NPYRLVWQSKVGPMPW 246 (359)
T ss_dssp C-SCEEEEEECCSCSSCB
T ss_pred C-CCEEEEEEcCCCCCCC
Confidence 6 5788999873 33444
No 283
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=21.76 E-value=25 Score=19.82 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=30.9
Q ss_pred CCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
+.+|+.-.++-+.|.+.+++...|+++.+-|.+..-
T Consensus 22 ~~~pd~l~~lk~eIl~VIsKYv~Id~~~v~v~l~~~ 57 (77)
T 3r9j_C 22 DAEPHYLPQLRKDILEVICKYVQIDPEMVTVQLEQK 57 (77)
T ss_dssp TTSCSSHHHHHHHHTTGGGTTSCCCCSCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhheecCcccEEEEEEEc
Confidence 356777888889999999999999999999998764
No 284
>2fa1_A Probable transcriptional regulator PHNF; PNHF, APC5558, effector binding DO PSI, protein structure initiative, MCSG; HET: BDF; 1.70A {Escherichia coli} SCOP: d.190.1.2
Probab=21.73 E-value=1.2e+02 Score=18.07 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=39.7
Q ss_pred HHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHH-HHHHHHHHHhhcCCCCCcEEEEEEeC
Q 033640 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKL-SAAISAILEKKLSVPKSRFFIKFYDT 103 (114)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~-~~~i~~~l~~~Lgi~~~ri~I~f~~~ 103 (114)
..+++.++.++..-.+.++ ++++. ...|.++-+.......-+.....+ ...+.+++++++|+...+..-.+.-.
T Consensus 34 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~~~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~ 108 (160)
T 2fa1_A 34 GHVADALGITEGENVIHLR---TLRRV-NGVALCLIDHYFADLTLWPTLQRFDSGSLHDFLREQTGIALRRSQTRISAR 108 (160)
T ss_dssp HHHHHHHTSCTTSEEEEEE---EEEEE-TTEEEEEEEEEESCGGGHHHHTTCCBSCHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred HHHHHhcCcCCCCeEEEEE---EEEee-CCeEEEEEEeeecHHHCCchhhhhccCcHHHHHHHHcCCCeEEEEEEEEEe
Confidence 4577888876654333333 23332 357766554443221211111111 23588899999999877766555544
No 285
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=21.63 E-value=79 Score=20.44 Aligned_cols=24 Identities=8% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEE
Q 033640 75 KKLSAAISAILEKKLSVPKSRFFI 98 (114)
Q Consensus 75 ~~~~~~i~~~l~~~Lgi~~~ri~I 98 (114)
..+.+++.+.+.+++|+++++|+.
T Consensus 203 ~~m~~~v~~~l~~~~g~~~~~i~~ 226 (232)
T 1qfj_A 203 FEMAKIARDLFCSERNAREDRLFG 226 (232)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGEEC
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEE
Confidence 457777888776778999999874
No 286
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=21.43 E-value=1.2e+02 Score=18.84 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=28.4
Q ss_pred EEEEEeeeCCChHHhHHHHH-HHHHHHHhhcCCCCCcE
Q 033640 60 YGELVSIGGLNPDVNKKLSA-AISAILEKKLSVPKSRF 96 (114)
Q Consensus 60 ~v~l~~~~~~~~~~~~~~~~-~i~~~l~~~Lgi~~~ri 96 (114)
.+.|.+-..+++.+|++.+- .|.+.|.+.+-.|+.|.
T Consensus 69 ~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~~pk~R~ 106 (140)
T 4dh9_Y 69 VIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARR 106 (140)
T ss_dssp CCCEEECCCSSHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred cEEEEEcCCcCHHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 46777778899999988876 67777877777776653
No 287
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=21.32 E-value=1.5e+02 Score=18.06 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 78 SAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
.+.+-+.+++..|+|+++..+.|.
T Consensus 104 V~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 104 VAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCCCHHHEEEEEC
Confidence 344666777788999999999884
No 288
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.26 E-value=1.3e+02 Score=17.28 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhc--CCCCCc-EEEEEE
Q 033640 78 SAAISAILEKKL--SVPKSR-FFIKFY 101 (114)
Q Consensus 78 ~~~i~~~l~~~L--gi~~~r-i~I~f~ 101 (114)
...+-+.+++.. |+++++ ..+.|.
T Consensus 47 V~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 47 ISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp HHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred HHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 345666777888 999999 888764
No 289
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=21.22 E-value=94 Score=16.96 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=19.4
Q ss_pred hHHhHHHHHHHHHHHHhhcC-CCCCcE
Q 033640 71 PDVNKKLSAAISAILEKKLS-VPKSRF 96 (114)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lg-i~~~ri 96 (114)
.+....+.+.+.+.+.+.|| ++++.+
T Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~i 41 (95)
T 2ju1_A 15 AERTAELVRLVRTSTATVLGHDDPKAV 41 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChhhC
Confidence 45566777889999999999 555543
No 290
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.19 E-value=58 Score=18.98 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKF 100 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f 100 (114)
..+-+.|++..|||++|-.+.|
T Consensus 32 ~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 32 GEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp HHHHHHHHHHHCCCTTTCCEEC
T ss_pred HHHHHHHHHHHCCChhHeEEEc
Confidence 4467778888999999988865
No 291
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=21.13 E-value=1.1e+02 Score=18.77 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred hHHhHHHHH----HHHHHHHhhcCCCCCcEEEE
Q 033640 71 PDVNKKLSA----AISAILEKKLSVPKSRFFIK 99 (114)
Q Consensus 71 ~~~~~~~~~----~i~~~l~~~Lgi~~~ri~I~ 99 (114)
.+.|.+++. ++.++|.+. ||+++|+.+.
T Consensus 80 ~~~N~~LS~~RA~aV~~~L~~~-Gv~~~ri~~~ 111 (149)
T 2k1s_A 80 HDLNMRLSQQRADSVASALITQ-GVDASRIRTQ 111 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCGGGEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHc-CCCHHHEEEE
Confidence 455565555 566777654 9999998764
No 292
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=21.10 E-value=2.1e+02 Score=19.75 Aligned_cols=76 Identities=7% Similarity=0.027 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEee--eCCChHHhHHHHHHHHHHHHhhcCCCCCc
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSI--GGLNPDVNKKLSAAISAILEKKLSVPKSR 95 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~--~~~~~~~~~~~~~~i~~~l~~~Lgi~~~r 95 (114)
++..+++.+.+.+..+.-. +++ -+.+.-| |..+++++.. +..+-++-.+.++++.+.+++.+++ .+
T Consensus 214 ~~~~~~I~~~i~~~~~V~~------vh~-l~~~~~G---~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~--~~ 281 (306)
T 3j1z_P 214 EDTRQRIKLIAKEDPRVLG------LHD-LRTRQAG---KTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED--AE 281 (306)
T ss_dssp HHHHHHHHHHHHHSTTBCC------CCC-BCCEEET---TEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT--CE
T ss_pred hhHHHHHHHHHhcCCCcce------eee-EEEEEEC---CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--Ce
Confidence 4556667666666554311 222 2222223 3456777643 4467677778888888888888875 58
Q ss_pred EEEEEEeCCC
Q 033640 96 FFIKFYDTKA 105 (114)
Q Consensus 96 i~I~f~~~~~ 105 (114)
++|..++...
T Consensus 282 v~IhveP~~~ 291 (306)
T 3j1z_P 282 VIIHQDPVQV 291 (306)
T ss_dssp EEECCEETTS
T ss_pred EEEEeCCCCC
Confidence 9998887654
No 293
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.02 E-value=7.6 Score=21.82 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=23.9
Q ss_pred CChHHhHHHHHHHHH--------------HHHhhcCCCCCcEEEEEEe
Q 033640 69 LNPDVNKKLSAAISA--------------ILEKKLSVPKSRFFIKFYD 102 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~--------------~l~~~Lgi~~~ri~I~f~~ 102 (114)
++.++...+-+.+.. .|.+.||++..+|-|.|++
T Consensus 24 ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqN 71 (80)
T 1wh5_A 24 FTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 71 (80)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccc
Confidence 567776666554443 5788899998888777754
No 294
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=26.34 E-value=21 Score=19.02 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEE
Q 033640 79 AAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 79 ~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+-+.+++..|+|+++..+.|.
T Consensus 24 ~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 24 LQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 44666677788999998888774
No 295
>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A 2y2d_A 2y2e_A
Probab=20.86 E-value=95 Score=20.01 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=19.5
Q ss_pred CChHHhHHHHHHHHHHHHhhcCCCCCcEE
Q 033640 69 LNPDVNKKLSAAISAILEKKLSVPKSRFF 97 (114)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~ 97 (114)
.++++.+.+.+ |++.+.+..++++++|+
T Consensus 125 ~t~aQ~~al~~-L~~~l~~~y~i~~~~I~ 152 (187)
T 1j3g_A 125 YTDAQYQQLAA-VTNALITRYPAIANNMT 152 (187)
T ss_dssp CCTHHHHHHHH-HHHHHHHHSTTGGGCEE
T ss_pred CCHHHHHHHHH-HHHHHHHHcCCChHHEE
Confidence 56777666666 55666688899886654
No 296
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=20.77 E-value=1.8e+02 Score=19.54 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhCCCccEEEEEEeCCc-------eeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcC
Q 033640 18 SSILSEATSTVANIIGKPEAYVMIVLKGSV-------PMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (114)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~-------~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (114)
+++.+...+.+.+.+. |.. .+-+-++. .+...-....+.++.+. |++++ ....+...+...+.++++
T Consensus 40 ~~l~~~aA~~l~~~l~-~~~--viGla~G~T~~~~~~~l~~~~~~~~v~~v~L~--ggl~~-~~~~~~~~~~~~la~~~~ 113 (255)
T 2okg_A 40 KEMGRAAVACMKKRFS-GKN--IVAVTGGTTIEAVAEMMTPDSKNRELLFVPAR--GGLGE-DVKNQANTICAHMAEKAS 113 (255)
T ss_dssp HHHHHHHHHHHHHHCC-SEE--EEEECCSHHHHHHHHHCCCCTTCCEEEEEESE--EECC----CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-CCC--EEEECCcHHHHHHHHhhccccCCCCCEEEECC--CCCCC-CcccCHHHHHHHHHHHHC
Confidence 4455566666777665 333 34444442 12110022344455554 66776 455566778888889999
Q ss_pred CCCCcEEE
Q 033640 91 VPKSRFFI 98 (114)
Q Consensus 91 i~~~ri~I 98 (114)
+++..+++
T Consensus 114 ~~~~~l~~ 121 (255)
T 2okg_A 114 GTYRLLFV 121 (255)
T ss_dssp CEECCCCC
T ss_pred CeeEEEec
Confidence 88776654
No 297
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=20.55 E-value=1.4e+02 Score=18.01 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=15.8
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033640 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (114)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (114)
|.++|+|.-+. + .+.|.+.+.+++.
T Consensus 63 ~~lrIqT~~~~-p--~eaL~~al~~L~~ 87 (115)
T 1xpp_A 63 PQIYVRVKSGK-P--QSAIKRAVRKLSK 87 (115)
T ss_dssp CEEEEEESSSC-H--HHHHHHHHHHHHH
T ss_pred cEEEEEeCCCC-h--HHHHHHHHHHHHH
Confidence 68899997654 2 3566666555443
No 298
>1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase, attractant; 1.75A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 2f9z_A
Probab=20.50 E-value=1.8e+02 Score=18.59 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCCccE----EEEEEeCCceeeecCCCCCeeEEEEEeeeCCC----hHHhHHHHHHHHHHH
Q 033640 19 SILSEATSTVANIIGKPEAY----VMIVLKGSVPMSFGGTEDPAAYGELVSIGGLN----PDVNKKLSAAISAIL 85 (114)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~----i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~----~~~~~~~~~~i~~~l 85 (114)
.+....+..++..+++..+- +-+.-...-...+++.++|.+.+.+...|+++ -.-..+.+..+.+.+
T Consensus 18 i~~~~aa~~Ls~~l~~~v~i~vp~v~~~~~~e~~~~l~~~~~~~~~v~i~~~G~l~G~~ll~~~~~~a~~i~~~m 92 (206)
T 1xkr_A 18 IGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVGVKMPVTGDIEGSVLLIMGTTVVKKILEIL 92 (206)
T ss_dssp HHHHHHHHHHHHHHTSCEEEECCCEEEEEGGGGGGGSSCTTCEEEEEEEEEEESSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEEEECCeEEEEcHHHHHHHhcCCCCcEEEEEEEeecCCCeEEEEEECHHHHHHHHHHH
Confidence 34556778888999986552 22211122334556656788888887776554 233455555555544
No 299
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=20.48 E-value=2.2e+02 Score=21.57 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=40.6
Q ss_pred CCeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCcc---------EEEEEEeCCceeeecCCCCCeeEEEEEeeeCCC
Q 033640 1 MPCLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEA---------YVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLN 70 (114)
Q Consensus 1 MP~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~---------~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~ 70 (114)
+|+++|-|-....+ ++..+|+++|...+- .+|.... .+.|.+++ -|+..-..-++|+.++++.
T Consensus 146 vPLiEIVTePd~~s~eeA~a~~~~L~~ilr-~lgvsd~~meeGslR~DvNVSvr~------~g~~~~GtRvEiKNlnS~~ 218 (483)
T 3ip4_B 146 TPLIEIVSEPDIRSPKEAYAYLEKLRSIIQ-YTGVSDVKMEEGSLRCDANISLRP------YGQEKFGTKAELKNLNSFN 218 (483)
T ss_dssp CEEEEEEECSCBCSHHHHHHHHHHHHHHHH-HHTSCCCCGGGTSEEEEEEEEEEE------TTSCCCCCEEEEECCCSHH
T ss_pred CceEEEecCCCCCCHHHHHHHHHHHHHHHH-HhCCCCCCcccCceEeeeeEeecC------CCCCCCcceEEEecccCHH
Confidence 59999999887544 446788888877654 4553322 23344433 2444445689999998765
No 300
>2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=20.43 E-value=1.7e+02 Score=18.52 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=40.1
Q ss_pred CCeEEEEe--CCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHH
Q 033640 1 MPCLNIST--NVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLS 78 (114)
Q Consensus 1 MP~i~i~t--n~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~ 78 (114)
||+-.|.. -+-.+ ++.+...+++...+...+++. .+.+.... |--.+|-.+++...-+ .+.+++-
T Consensus 3 ~~i~~I~i~a~vh~T-ED~eKV~~Al~n~fp~~~~~~--~i~~~~~e------G~~Gn~I~il~~~i~~----~~~~~~l 69 (159)
T 2nrq_A 3 LKINQAIISVFIHET-EDYNKIVNTIESFFSPLISNS--KKNVTTAQ------GHYGNKIIILEYRFDR----KSGEQFF 69 (159)
T ss_dssp ---CEEEEEEEECTT-SCHHHHHHHHHHHTTTGGGGS--EEEEEEEE------CSSSCEEEEEEEEECH----HHHHHHH
T ss_pred ceEEEEEEEEEEecC-cCHHHHHHHHHHhcccccccC--ceEEEEee------eeecCcEEEEEEEEcc----hhHHHHH
Confidence 45544444 44443 557755555555553322221 33322211 3234676566655422 3334454
Q ss_pred HHHHHHHHh--------hc--CCCCCcEEEEEEe
Q 033640 79 AAISAILEK--------KL--SVPKSRFFIKFYD 102 (114)
Q Consensus 79 ~~i~~~l~~--------~L--gi~~~ri~I~f~~ 102 (114)
+.|.+.+.+ .+ ++..+++|+.|.=
T Consensus 70 ~~l~~ll~~~~~~~l~~~l~~r~~~~~l~lrldK 103 (159)
T 2nrq_A 70 KIILEKIETSELMLILTTIDSHIDGSKLYLRFDK 103 (159)
T ss_dssp HHHHTTSCHHHHHHHHTC--CCEETTEEEEEECH
T ss_pred HHHHHHhhHHHHHHHHHHHHhceeCCEEEEEEcC
Confidence 555554432 22 2345788887753
No 301
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=20.29 E-value=1.8e+02 Score=20.89 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=30.4
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+++...=..+.+.--+-++.|.+.+. +.||+++|++|.+-
T Consensus 97 VS~EV~~~ls~d~e~~i~eA~~l~~l~~-~~gi~~~nv~IKIP 138 (334)
T 3hjz_A 97 VSTEVDARLSFDTEATVKKARKLINLYK-NFGIEKERILIKIA 138 (334)
T ss_dssp EEEECCGGGTTCHHHHHHHHHHHHHHHH-HTTCCGGGEEEEEE
T ss_pred EEEEEcCCccCCHHHHHHHHHHHHHHhh-hhCCCCCcEEEEeC
Confidence 4555554334677777777788888774 55999999999874
No 302
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=20.22 E-value=1.4e+02 Score=20.74 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=26.9
Q ss_pred CCCCCeeEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCC
Q 033640 53 GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (114)
Q Consensus 53 g~~~p~~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~ 92 (114)
|+.+.---+.+-.....++..-.+....+.+.+.+++|++
T Consensus 8 ~~~~~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~ 47 (321)
T 3p7i_A 8 GSEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVK 47 (321)
T ss_dssp ------CCEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhcCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 4543323356666666788887788888999999999985
No 303
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=20.13 E-value=2.1e+02 Score=19.30 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=54.2
Q ss_pred cChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeee--------------c---CCCCCeeEEEEEeeeCC-----ChH
Q 033640 15 VDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSF--------------G---GTEDPAAYGELVSIGGL-----NPD 72 (114)
Q Consensus 15 ~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~--------------g---g~~~p~~~v~l~~~~~~-----~~~ 72 (114)
.+.++-...++.-+.+..||..-++.|.+.|+..+.- | |-..|-..+.....|.+ +..
T Consensus 63 ~qIEAARia~nRyl~r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~ 142 (215)
T 4a17_H 63 EALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKE 142 (215)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECG
T ss_pred HHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecC
Confidence 3345556677778887788877788888887743332 1 23356555555444431 234
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCCCcccc
Q 033640 73 VNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFL 111 (114)
Q Consensus 73 ~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~ 111 (114)
++++.+++....-...|.++. +|.+. ..|||-
T Consensus 143 ~~~~~A~eALr~A~~KlP~~t-kiv~~------~kwgft 174 (215)
T 4a17_H 143 PHVKYAIDALTRAKAKFPGRQ-KVVTS------QKWGFT 174 (215)
T ss_dssp GGHHHHHHHHHHHGGGSSSCE-EEEEE------SBCTTS
T ss_pred CCHHHHHHHHHHHhhhCCCce-EEEEc------cccCCC
Confidence 667777776666666766543 34432 578873
No 304
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1
Probab=20.03 E-value=1.8e+02 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=30.2
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+++...=..+.+.--+-++.|.+.+ ++.||+++|++|.+-
T Consensus 101 VS~EV~~~ls~d~e~~i~eA~~l~~l~-~~~gi~~~nv~IKIP 142 (329)
T 3m16_A 101 ISTEVDARLSFDTQATVAKARKLIRLY-QDAGIDSDRILIKIA 142 (329)
T ss_dssp EEEECCGGGTTCHHHHHHHHHHHHHHH-HHTTCCGGGEEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhh-hhhCCCCCcEEEEeC
Confidence 455555433467777777778888877 456999999999874
No 305
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Probab=20.01 E-value=1.8e+02 Score=20.97 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=30.0
Q ss_pred eEEEEEeeeCCChHHhHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 033640 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (114)
Q Consensus 59 ~~v~l~~~~~~~~~~~~~~~~~i~~~l~~~Lgi~~~ri~I~f~ 101 (114)
+.+++...=..+.+.--+-++.|.+.+ ++.||+++|++|.+-
T Consensus 120 VS~EV~~~ls~d~e~~i~eA~~l~~l~-~~~gi~~~nv~IKIP 161 (345)
T 3tkf_A 120 VSSEVDARVSFNSATTIDYAKRIIARY-ESNGIPKDRVLIMIA 161 (345)
T ss_dssp EEEECCGGGTTCHHHHHHHHHHHHHHH-HHTTCCGGGEEEEEE
T ss_pred EEEEEcCCccCCHHHHHHHHHHHHHHh-hhcCCCCCcEEEEeC
Confidence 455555433467777777778888777 456999999999874
Done!