BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033644
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
Length = 159
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 101/110 (91%)
Query: 1 MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
MDP+E+RYLE+ED P+MKTIKG+ G +GTI+GT++ATW+DVPRVER VALPGLIRTLK
Sbjct: 1 MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60
Query: 61 MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
MMG +G+TFAAIGGVYIGVEQLVQ++R KRDF NGA+GGFVAGA+VLGY+
Sbjct: 61 MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYR 110
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKM---------M 62
E P+ TI G GL G F + AT+ + R R M M
Sbjct: 50 ESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNM 108
Query: 63 GNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATV 106
+ G FA +G VY GVE ++ YR K D NG GF+ GA +
Sbjct: 109 WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAIL 152
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKM---------M 62
E P+ TI G GL G F + AT+ + R R M M
Sbjct: 50 ESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNM 108
Query: 63 GNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATV 106
+ G FA +G VY GVE ++ YR K D NG GF+ GA +
Sbjct: 109 WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAIL 152
>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum
GN=OEP16 PE=1 SV=1
Length = 146
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 57 RTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATV 106
++LK M G + AI GVY+G+E V+ R RD+ N GG V GA V
Sbjct: 65 KSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGALV 114
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1
OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1
Length = 173
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 58 TLKMMG----NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKG 111
T K MG N TFA +G V+ E +V+ R K D VN A+ G V G ++ G
Sbjct: 90 TAKQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGG 147
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4
OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3
Length = 142
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 55 LIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAG 103
+ T K MG N TFA +G V+ E +V+ R K D VN A+ G V G
Sbjct: 56 FVFTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTG 108
>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis
thaliana GN=OEP161 PE=1 SV=1
Length = 148
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 55 LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGA--TVLGYKG 111
L LK + G+ + A GGVYIG E ++ R RD+ N + G GA + +G KG
Sbjct: 63 LEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKG 121
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
F IG +Y GVE +++ R K D NG GF GA L YK
Sbjct: 128 NFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAG-LAYK 169
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=3 SV=1
Length = 181
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 25 FGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNY-GMTFAAIGGVYIGVEQLV 83
GLV G+IF +++ + ++ V G++R ++M G+ FAA GG++ ++ +
Sbjct: 23 MGLVGGSIF-QAFGGYKNAAKGKKLV---GMMREVRMRSTLTGVQFAAWGGMFSTIDCCL 78
Query: 84 QHYRMKRDFVNGAVGGFVAGA 104
R K D +N V G + GA
Sbjct: 79 VAIRKKEDPINSIVSGGLTGA 99
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1
Length = 222
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 3 PSELRYLEDEDTP-MMKTIKGATFGLVSGTIFGTVVATWQDVPR-VERRVALPGLIRTLK 60
P +R +ED MM TI G+ F + G +++ P ++RR L G I +K
Sbjct: 7 PCPIRIVEDCGCAFMMGTIGGSLFEFLKG---------FRNAPTGLQRR--LYGGIDLVK 55
Query: 61 MMG-NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGI 112
M + +FA G + V+ + HYR + D N + G G + GI
Sbjct: 56 MRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGI 108
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 14 TPMMKTIKGATFGLVSGTIFGTVVATWQ-DVP-RVERRVALPGLIRTLKMMGNYGM---- 67
P I G T G G +FG +A+ D P PGL +K + + +
Sbjct: 42 CPGKAAISGVT-GFALGGVFGLFMASMAYDTPLHTPAPTNAPGLPNKVKELADLPLKQQI 100
Query: 68 ----------------TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
F IG +Y GVE +V+ R K D NG G + G L YK
Sbjct: 101 KIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGG-LAYK 158
>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis
thaliana GN=OEP164 PE=2 SV=1
Length = 136
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 44 PRVERRVALPGLIRT---LKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVN 94
PR R++ L G+ + K +G +G + GV+ +Q YR K D+VN
Sbjct: 35 PRDARKIGLSGVSQASFVAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVN 88
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAG 103
F IGGV+ G E ++ R K D NG G + G
Sbjct: 106 NFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTG 141
>sp|Q9NAQ9|TIM22_CAEEL Mitochondrial import inner membrane translocase subunit tim-22
OS=Caenorhabditis elegans GN=tim-22 PE=3 SV=1
Length = 213
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 62 MGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGILP 114
M +YG F +IG ++ G E ++ R K D+ NG G + G + GI+P
Sbjct: 140 MKSYGKNFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAGIMP 192
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 57 RTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAG 103
RT N+G IG VY GVE ++ R K D NG G + G
Sbjct: 96 RTYSSAKNFGY----IGMVYSGVECAIESLRAKHDIYNGVSAGCITG 138
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 2 DPSELRYLEDEDTPM-MKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
DP L D M TI GA + + G W++ P E+R++ +T
Sbjct: 9 DPCPYVILNDFGAAFSMGTIGGAIWHSIKG---------WRNSPPGEKRISAIAAAKTRA 59
Query: 61 --MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAG 103
+ GN+G+ GG++ + V+ R K D N + GF G
Sbjct: 60 PVLGGNFGV----WGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTG 100
>sp|Q9X0H9|Y1094_THEMA Uncharacterized RNA methyltransferase TM_1094 OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=TM_1094 PE=3 SV=1
Length = 439
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 56 IRTLKMM-GNYGMTFAAIG------GVYIGVEQLVQHYRMKRDFVNGAV 97
+R KM+ G YG+ + G G Y G E L++ YR KRDF G V
Sbjct: 5 VRIQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKV 53
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
F IG +Y GVE V+ R K D NG G + G L YK
Sbjct: 114 NFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGG-LAYK 155
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
F IG +Y GVE ++ R K D NG G + G L YK
Sbjct: 122 NFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGG-LAYK 163
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAG 103
F +G +Y G E V+ R K D N + G + G
Sbjct: 113 NFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGA 104
FA +G ++ G+E ++ R K D NG G + GA
Sbjct: 122 NFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGA 158
>sp|O07898|VIBC_VIBCH Vibriobactin-specific isochorismate synthase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=vibC PE=3 SV=1
Length = 395
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 47 ERRVALPGLIRTLKMMGNYGMTFAA 71
E+ +ALP L+R+L + ++G TFAA
Sbjct: 155 EQEIALPTLLRSLLAINHHGYTFAA 179
>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=3 SV=1
Length = 224
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 2 DPSELRYLEDEDTP-MMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
P +R +ED MM T+ G+ F + G +++ P RR L G I +++
Sbjct: 6 QPCPIRIVEDCGCAFMMGTMGGSLFQYLKG---------FRNAPSGLRR-GLHGGIESVR 55
Query: 61 MMG-NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGI 112
+ +FA G + V+ ++ YR + D N V G G + GI
Sbjct: 56 LRTPAIAGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSGAATGGILAARNGI 108
>sp|P25710|NUJM_NEUCR NADH-ubiquinone oxidoreductase 21.3 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=B13D24.010 PE=4 SV=1
Length = 200
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 67 MTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGI 112
++F GG+Y +Q + R K D N A+G F+ G +V+G + +
Sbjct: 59 ISFTLAGGIYRFAQQASANLREKEDGWNHAIGAFL-GGSVMGLRSL 103
>sp|Q0MQB8|NDUAB_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
OS=Pongo pygmaeus GN=NDUFA11 PE=2 SV=3
Length = 141
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 35 TVVATWQDVPRVERRVAL--PG-LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91
T +A+ + RV L PG + + +G Y T AA+G V+ + H R K D
Sbjct: 26 TSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPD 85
Query: 92 -----FVNGAVGGFVAGATVLGY 109
F+ G GG GA Y
Sbjct: 86 DPLNYFLGGCAGGLTLGARTHNY 108
>sp|Q0MQB9|NDUAB_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
OS=Gorilla gorilla gorilla GN=NDUFA11 PE=2 SV=3
Length = 141
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 35 TVVATWQDVPRVERRVAL--PG-LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91
T +A+ + RV L PG + + +G Y T AA+G V+ + H R K D
Sbjct: 26 TSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPD 85
Query: 92 -----FVNGAVGGFVAGATVLGY 109
F+ G GG GA Y
Sbjct: 86 DPLNYFLGGCAGGLTLGARTHNY 108
>sp|A0LNW5|HCP_SYNFM Hydroxylamine reductase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=hcp PE=3 SV=1
Length = 542
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 29 SGTIFGTVVATWQDVPRV---------ERRVALPGLIRTL 59
+G IF T + W DVP V ER +ALPG T+
Sbjct: 320 TGNIFTTGLVGWPDVPHVTNRDFSPVIERALALPGFPETV 359
>sp|Q0MQC0|NDUAB_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
OS=Pan troglodytes GN=NDUFA11 PE=2 SV=3
Length = 141
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 35 TVVATWQDVPRVERRVAL--PG-LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91
T +A+ + RV L PG + + +G Y T AA+G V+ + H R K D
Sbjct: 26 TSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPD 85
Query: 92 -----FVNGAVGGFVAGATVLGY 109
F+ G GG GA Y
Sbjct: 86 DPLNYFLGGCAGGLTLGARTHNY 108
>sp|Q86Y39|NDUAB_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
OS=Homo sapiens GN=NDUFA11 PE=1 SV=3
Length = 141
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 35 TVVATWQDVPRVERRVAL--PG-LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91
T +A+ + RV L PG + + +G Y T AA+G V+ + H R K D
Sbjct: 26 TSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPD 85
Query: 92 -----FVNGAVGGFVAGATVLGY 109
F+ G GG GA Y
Sbjct: 86 DPLNYFLGGCAGGLTLGARTHNY 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,831,072
Number of Sequences: 539616
Number of extensions: 1561216
Number of successful extensions: 3736
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3714
Number of HSP's gapped (non-prelim): 34
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)