Query 033644
Match_columns 114
No_of_seqs 101 out of 619
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 1.1E-30 2.4E-35 183.7 3.4 112 1-113 28-143 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 8.5E-24 1.8E-28 151.8 10.1 99 12-113 6-107 (170)
3 PTZ00236 mitochondrial import 99.9 3.2E-23 7E-28 147.9 10.5 98 12-113 8-109 (164)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 5E-22 1.1E-26 135.7 10.2 99 14-113 1-104 (128)
5 TIGR00983 3a0801s02tim23 mitoc 99.8 1.5E-20 3.3E-25 132.7 11.1 98 12-113 31-132 (149)
6 KOG1652 Mitochondrial import i 99.8 1.5E-20 3.3E-25 134.8 -2.9 98 12-112 6-106 (183)
7 KOG3324 Mitochondrial import i 99.4 1.1E-13 2.3E-18 100.9 5.1 91 12-105 74-168 (206)
8 COG5596 TIM22 Mitochondrial im 99.1 8.3E-12 1.8E-16 90.3 -1.3 99 12-111 43-164 (191)
9 COG5596 TIM22 Mitochondrial im 97.1 2.5E-05 5.4E-10 56.9 -3.4 98 11-112 26-128 (191)
10 KOG4608 Uncharacterized conser 96.2 0.00096 2.1E-08 50.6 -0.5 41 68-109 137-177 (270)
11 PF10247 Romo1: Reactive mitoc 95.7 0.034 7.3E-07 34.4 4.8 64 13-78 1-64 (67)
12 KOG1398 Uncharacterized conser 95.2 0.021 4.5E-07 46.3 3.5 93 9-104 245-341 (460)
13 KOG4096 Uncharacterized conser 94.9 0.047 1E-06 34.2 3.7 69 12-82 4-72 (75)
14 KOG1398 Uncharacterized conser 83.9 3.6 7.7E-05 33.7 5.8 51 55-105 71-121 (460)
15 PF11998 DUF3493: Protein of u 81.8 6.2 0.00013 24.8 5.2 69 1-76 1-70 (75)
16 PF02466 Tim17: Tim17/Tim22/Ti 77.8 17 0.00038 24.0 8.6 28 12-39 3-30 (128)
17 PF12732 YtxH: YtxH-like prote 76.6 5.6 0.00012 24.3 3.8 24 24-48 2-25 (74)
18 PF08560 DUF1757: Protein of u 74.4 28 0.00061 24.7 8.1 34 2-37 12-45 (155)
19 PF09877 DUF2104: Predicted me 70.5 28 0.00061 23.0 6.8 70 23-112 8-78 (99)
20 PF04418 DUF543: Domain of unk 66.9 3.3 7.2E-05 26.0 1.2 26 12-37 22-47 (75)
21 PLN02720 complex II 60.4 23 0.0005 24.7 4.4 57 50-109 54-110 (140)
22 PF03672 UPF0154: Uncharacteri 59.0 32 0.0007 21.0 4.5 17 24-40 4-20 (64)
23 COG4980 GvpP Gas vesicle prote 55.8 33 0.00073 23.3 4.6 26 21-47 5-30 (115)
24 PLN02806 complex I subunit 55.0 25 0.00055 22.4 3.6 25 21-45 4-28 (81)
25 KOG4455 Uncharacterized conser 48.1 13 0.00028 25.0 1.6 16 94-111 33-48 (110)
26 PRK04032 hypothetical protein; 47.5 94 0.002 22.2 6.0 65 16-91 35-99 (159)
27 PF14689 SPOB_a: Sensor_kinase 43.9 30 0.00065 20.4 2.6 19 78-96 8-27 (62)
28 PF06916 DUF1279: Protein of u 41.5 64 0.0014 20.5 4.1 33 55-88 3-41 (91)
29 PF10439 Bacteriocin_IIc: Bact 38.5 35 0.00076 20.4 2.4 29 1-29 8-39 (65)
30 PF07080 DUF1348: Protein of u 38.2 18 0.00039 25.4 1.2 17 79-95 9-25 (143)
31 PF13373 DUF2407_C: DUF2407 C- 38.2 43 0.00093 23.3 3.1 26 15-40 84-109 (140)
32 COG3558 Uncharacterized protei 36.3 21 0.00045 24.8 1.2 17 79-95 11-27 (154)
33 PLN02453 complex I subunit 31.3 39 0.00084 22.6 1.8 23 87-109 56-78 (105)
34 PRK11677 hypothetical protein; 29.2 73 0.0016 22.1 3.0 21 20-40 3-23 (134)
35 PF15178 TOM_sub5: Mitochondri 28.5 25 0.00055 20.2 0.5 10 1-10 11-20 (51)
36 PRK00523 hypothetical protein; 28.5 1.5E+02 0.0033 18.4 5.1 16 24-39 12-27 (72)
37 PRK01844 hypothetical protein; 28.3 1.5E+02 0.0034 18.4 5.1 16 24-39 11-26 (72)
38 KOG1519 Predicted mitochondria 27.9 2.6E+02 0.0056 21.2 5.9 27 14-40 206-232 (297)
39 COG4575 ElaB Uncharacterized c 27.4 71 0.0015 21.3 2.6 18 20-37 84-101 (104)
40 PF05433 Rick_17kDa_Anti: Glyc 26.7 79 0.0017 17.4 2.3 21 87-108 18-38 (42)
41 PF05957 DUF883: Bacterial pro 26.0 97 0.0021 19.5 3.0 18 20-37 74-91 (94)
42 PF07019 Rab5ip: Rab5-interact 25.3 43 0.00093 20.7 1.2 15 95-111 11-25 (81)
43 PF13084 DUF3943: Domain of un 25.2 84 0.0018 21.0 2.6 37 66-104 38-77 (107)
44 PRK10132 hypothetical protein; 24.1 1.1E+02 0.0024 20.4 3.1 18 20-37 87-104 (108)
45 PRK11624 cdsA CDP-diglyceride 23.5 1.8E+02 0.004 22.4 4.6 71 12-94 182-252 (285)
46 COG3768 Predicted membrane pro 23.3 2.9E+02 0.0063 22.2 5.7 37 69-107 68-109 (350)
47 PHA00438 hypothetical protein 22.5 1.9E+02 0.0041 18.4 3.7 22 82-104 40-61 (81)
48 COG3105 Uncharacterized protei 21.6 2E+02 0.0044 20.1 4.0 25 16-40 4-28 (138)
49 COG2035 Predicted membrane pro 21.0 2.1E+02 0.0046 22.3 4.5 35 71-105 121-159 (276)
50 PF12989 DUF3873: Domain of un 20.5 49 0.0011 20.5 0.7 22 73-94 44-66 (69)
51 PF13940 Ldr_toxin: Toxin Ldr, 20.5 1.2E+02 0.0027 16.1 2.2 19 90-109 12-30 (35)
52 TIGR02662 dinitro_DRAG ADP-rib 20.3 2.5E+02 0.0053 21.2 4.7 16 93-109 241-256 (287)
53 cd01031 EriC ClC chloride chan 20.1 3.8E+02 0.0082 21.3 5.9 41 64-104 212-256 (402)
54 COG5336 Uncharacterized protei 20.0 1.7E+02 0.0037 19.8 3.3 26 15-40 44-69 (116)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-30 Score=183.69 Aligned_cols=112 Identities=37% Similarity=0.601 Sum_probs=99.3
Q ss_pred CChhhhhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh---cCcchhhccchhhH-HHHHHHhhhhhHHHHHHHHHH
Q 033644 1 MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQ---DVPRVERRVALPGL-IRTLKMMGNYGMTFAAIGGVY 76 (114)
Q Consensus 1 ~~~~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~---~~p~~~~~~~~p~~-~~~~~~~~~~~~~fa~~g~~f 76 (114)
|||.|+|+++.+++|..|++.+.+.|+++|.++|+|.++|. +.|+..+...+||+ +++.+++++++++|+++|.+|
T Consensus 28 ~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvf 107 (168)
T KOG3225|consen 28 GDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVF 107 (168)
T ss_pred CChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhe
Confidence 68999999999999999999999999999999999999995 45654444445555 667778889999999999999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHhHHHhhhhcCC
Q 033644 77 IGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGIL 113 (114)
Q Consensus 77 ~~~ec~~e~~Rgk~D~~N~~~aG~~tGa~vlG~r~~~ 113 (114)
+++||.+|++|.|+||.|++++||+||+ -++.|+++
T Consensus 108 sg~Ec~iE~~RAK~D~~NgaiaG~vtGg-~l~~raGp 143 (168)
T KOG3225|consen 108 SGVECLIESFRAKSDWYNGAIAGCVTGG-SLGYRAGP 143 (168)
T ss_pred hhHHHHHHHHHhhhchhcceeeeeeecc-chhhcccc
Confidence 9999999999999999999999999999 58888753
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.91 E-value=8.5e-24 Score=151.77 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=82.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHh---hcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRM 88 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rg 88 (114)
+|+|++|.+++...++.+|.+.|.+...+ ++.|..++. ...++.+.++..+.+++||++|++|+++||+++++|+
T Consensus 6 r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl--~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~ 83 (170)
T TIGR00980 6 REPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL--VGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK 83 (170)
T ss_pred cCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh--hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999988888877777776 345543221 1234456666679999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHHHhhhhcCC
Q 033644 89 KRDFVNGAVGGFVAGATVLGYKGIL 113 (114)
Q Consensus 89 k~D~~N~~~aG~~tGa~vlG~r~~~ 113 (114)
|||+||+++|||+||+ ++++|++.
T Consensus 84 KeD~~NsiiAG~~TGa-~l~~r~G~ 107 (170)
T TIGR00980 84 KEDPWNSIISGFLTGA-ALAVRGGP 107 (170)
T ss_pred ccchHHHHHHHHHHHH-HHHhccCh
Confidence 9999999999999998 79999775
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.90 E-value=3.2e-23 Score=147.91 Aligned_cols=98 Identities=26% Similarity=0.317 Sum_probs=78.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHh---hcCcchhhccchh-hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALP-GLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYR 87 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~p-~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~R 87 (114)
+|+|+.|.+++...++.+|.+.|.+...+ ++.|...+ +. .+...-++..+.+++||++|++|+++||+++++|
T Consensus 8 r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~r---l~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R 84 (164)
T PTZ00236 8 REPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGER---FSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR 84 (164)
T ss_pred cCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcch---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988888766555544443 56775432 22 2333334667999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHHHhhhhcCC
Q 033644 88 MKRDFVNGAVGGFVAGATVLGYKGIL 113 (114)
Q Consensus 88 gk~D~~N~~~aG~~tGa~vlG~r~~~ 113 (114)
+|||+||+++|||+||+ ++++|.+.
T Consensus 85 ~K~D~~Nsi~AG~~TGa-~l~~r~G~ 109 (164)
T PTZ00236 85 GKEDHWNAIASGFFTGG-VLAIRGGW 109 (164)
T ss_pred ccCchHHHHHHHHHHHH-HHHHhcCh
Confidence 99999999999999998 79998763
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.88 E-value=5e-22 Score=135.70 Aligned_cols=99 Identities=30% Similarity=0.479 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhc-cchhhHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHh
Q 033644 14 TPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERR-VALPGLIRTLKMMGN----YGMTFAAIGGVYIGVEQLVQHYRM 88 (114)
Q Consensus 14 ~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~----~~~~fa~~g~~f~~~ec~~e~~Rg 88 (114)
||+.|+..+.+.|+.+|+++|.+..+++..+...++ ...++++..++.+++ .+..||.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999987421111111 122356777887777 999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHHHhhhhcCC
Q 033644 89 KRDFVNGAVGGFVAGATVLGYKGIL 113 (114)
Q Consensus 89 k~D~~N~~~aG~~tGa~vlG~r~~~ 113 (114)
|||+||+++||++||+ ++++|.++
T Consensus 81 k~D~~N~~~aG~~aGa-~~~~~~g~ 104 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGA-VLGLRSGP 104 (128)
T ss_pred ccccchhHHHHHHHHH-HHHhccCh
Confidence 9999999999999998 79998653
No 5
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.85 E-value=1.5e-20 Score=132.67 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=79.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYR 87 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~----~~~~~fa~~g~~f~~~ec~~e~~R 87 (114)
.|+-.+++..+++.|.++|.++|++.+.. +.|.... . ..+++..+++++ +.+++||+++.+|+++||.++++|
T Consensus 31 ~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~-~~~~~~~-~-k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R 107 (149)
T TIGR00983 31 FEDLCFGTGTCYLTGLAIGALNGLRLGLK-ETQSMPW-T-KLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATR 107 (149)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHh-hCCCCCc-H-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778899999999999999999999996 3443211 1 124555555544 778999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHHHhhhhcCC
Q 033644 88 MKRDFVNGAVGGFVAGATVLGYKGIL 113 (114)
Q Consensus 88 gk~D~~N~~~aG~~tGa~vlG~r~~~ 113 (114)
+|||+||+++|||+||+ ++..|+++
T Consensus 108 ~k~D~~Nsv~AGa~TGa-l~~~~~G~ 132 (149)
T TIGR00983 108 GKHDDFNSVAAGALTGA-LYKSTRGL 132 (149)
T ss_pred ccchhhHhHHHHHHHHH-HHHhccCh
Confidence 99999999999999998 68887653
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-20 Score=134.81 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHh---hcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRM 88 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rg 88 (114)
.|+|..+.+++....+.+|.+=|.+...+ ++.|...+. ...+..+..+.+..+++||+||++||.+||++.++|+
T Consensus 6 r~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~--~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~ 83 (183)
T KOG1652|consen 6 REPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARL--VGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRK 83 (183)
T ss_pred CCCCCceeeccccchhhhcccccceeeeeeeeecCCccccc--ccchhhhhccCcccccceeeeechhhHHHHHHHHHhc
Confidence 67888888888888888777766666655 367764432 2256667788889999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHHHhhhhcC
Q 033644 89 KRDFVNGAVGGFVAGATVLGYKGI 112 (114)
Q Consensus 89 k~D~~N~~~aG~~tGa~vlG~r~~ 112 (114)
|+|+||++++||+||+ +|..|.+
T Consensus 84 KeDpwNsivsGa~TGg-~La~r~g 106 (183)
T KOG1652|consen 84 KEDPWNSIVSGAATGG-LLAARGG 106 (183)
T ss_pred ccchHHHHHHHhhccc-eeecccc
Confidence 9999999999999998 6888854
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.1e-13 Score=100.90 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYR 87 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~----~~~~~fa~~g~~f~~~ec~~e~~R 87 (114)
.|+..+.+...++.|+++|++.|+..+.. +.+. .. ...|++.+.+++.. ..+.+.++++.+|+.+|..+++.|
T Consensus 74 ~E~l~f~tG~~yl~G~~iGa~~G~~~Glk-~~e~-~~-~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R 150 (206)
T KOG3324|consen 74 FENLTFGTGWAYLTGSAIGAFNGLILGLK-NTEN-GA-SGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATR 150 (206)
T ss_pred hhhhheeccchhccchhhhhHHHHHHhhh-cCCC-CC-ccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhh
Confidence 67888889999999999999999998884 2322 22 23456666666555 557788899999999999999999
Q ss_pred hhcchHHHHHHHHHHhHH
Q 033644 88 MKRDFVNGAVGGFVAGAT 105 (114)
Q Consensus 88 gk~D~~N~~~aG~~tGa~ 105 (114)
+|||+||++.||++||++
T Consensus 151 ~~dd~lnsv~AGalTGal 168 (206)
T KOG3324|consen 151 GKDDDLNSVAAGALTGAL 168 (206)
T ss_pred ccccchhhhhhhhhhhhh
Confidence 999999999999999985
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.3e-12 Score=90.34 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=78.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHh-hcC---cchhhc---------------cchhhHHHHHHHhh----hhhHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATW-QDV---PRVERR---------------VALPGLIRTLKMMG----NYGMT 68 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~-~~~---p~~~~~---------------~~~p~~~~~~~~~~----~~~~~ 68 (114)
.+.|+.+++.+.+.|+.+|...+.+.+++ |.. |..+.+ ...-|.+.+++.++ ..+++
T Consensus 43 ~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n 122 (191)
T COG5596 43 SYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKN 122 (191)
T ss_pred hhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccccccc
Confidence 45799999999999999999999999998 321 111100 01114555666665 77999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHhhhhc
Q 033644 69 FAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKG 111 (114)
Q Consensus 69 fa~~g~~f~~~ec~~e~~Rgk~D~~N~~~aG~~tGa~vlG~r~ 111 (114)
|++.|..|.+.||.++.+|+|||+.|++-+|+.||+ .+..+.
T Consensus 123 ~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa-~~~~~~ 164 (191)
T COG5596 123 LGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGA-ALASSA 164 (191)
T ss_pred cceeeeecccchhhhhhhhhccccchhhhhhhhhhH-HHHhhc
Confidence 999999999999999999999999999999999998 476653
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=2.5e-05 Score=56.91 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=73.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhh----cCcchhhccchhhHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHH
Q 033644 11 DEDTPMMKTIKGATFGLVSGTIFGTVVATWQ----DVPRVERRVALPGLIRTLKMMGNYGMTFA-AIGGVYIGVEQLVQH 85 (114)
Q Consensus 11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~----~~p~~~~~~~~p~~~~~~~~~~~~~~~fa-~~g~~f~~~ec~~e~ 85 (114)
+.+.|...-+.++..++-++.+.......+. ..|...- . ..+.....+....+.+|+ ++|++|+.++|..++
T Consensus 26 e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f-~--ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r 102 (191)
T COG5596 26 ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGF-S--SSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFR 102 (191)
T ss_pred hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccc-h--hhcccccccccccCccccccccceeeccccchHH
Confidence 4678999999998888888887777766652 1222111 0 012222335557788888 899999999999999
Q ss_pred HHhhcchHHHHHHHHHHhHHHhhhhcC
Q 033644 86 YRMKRDFVNGAVGGFVAGATVLGYKGI 112 (114)
Q Consensus 86 ~Rgk~D~~N~~~aG~~tGa~vlG~r~~ 112 (114)
+|.|.|.||....|+.+|. .+|.++.
T Consensus 103 ~q~~~~~~n~~~rg~ftG~-n~GvlGl 128 (191)
T COG5596 103 LQLKEQLNNAGKRGFFTGK-NLGVLGL 128 (191)
T ss_pred HHHhhcccccccccccccc-ccceeee
Confidence 9999999999999999998 6888753
No 10
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00096 Score=50.59 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHhhh
Q 033644 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGY 109 (114)
Q Consensus 68 ~fa~~g~~f~~~ec~~e~~Rgk~D~~N~~~aG~~tGa~vlG~ 109 (114)
-.|++.+.|-+..-.+.-+|+|+|.||.+.+|.+||+ +.++
T Consensus 137 R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgs-vF~~ 177 (270)
T KOG4608|consen 137 RTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGS-VFRI 177 (270)
T ss_pred EEeeehhhHHHHHHHHHHHcCchhhhhhhccccceee-eEEe
Confidence 3456667777777778888999999999999999998 5543
No 11
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=95.70 E-value=0.034 Score=34.38 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 033644 13 DTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIG 78 (114)
Q Consensus 13 ~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~ 78 (114)
++|+.|.-.....|..+|..+|++.+.+.-.....++.. -++..-+.+-..+.+|+.+=++=+.
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~--~~~~lg~~~l~sg~tFG~Fm~iGs~ 64 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRG--LMRTLGKYMLGSGATFGFFMSIGSV 64 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcc--hHhHHhHHHhcchhHHHHHHhhhcc
Confidence 489999999999999998888888887521111111111 1333344455666677665444333
No 12
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.021 Score=46.28 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=58.5
Q ss_pred ccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhh-HHHHH--HHhhhhhHHHHHHHHHHHHHHHHHH
Q 033644 9 LEDEDT-PMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPG-LIRTL--KMMGNYGMTFAAIGGVYIGVEQLVQ 84 (114)
Q Consensus 9 ~~~~~~-c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~-~~~~~--~~~~~~~~~fa~~g~~f~~~ec~~e 84 (114)
+.+.+| |+...+.++..=+..|...- .++.-.|.+..-...|. +...+ |.-=+.+...+.+-++|..+.|...
T Consensus 245 C~h~hsnCisys~~gfik~f~~g~~lq---~~Lt~v~nvr~i~~~pm~l~sll~nrenlqlg~FlgsfvfIfkatsC~lr 321 (460)
T KOG1398|consen 245 CAHIHSNCISYSANGFIKTFKKGFPLQ---FSLTFVPNVRLILQKPMALTSLLANRENLQLGSFLGSFVFIFKATSCALR 321 (460)
T ss_pred ccCCCchHHHHHHHHhHhhcccceeeE---EEEEecHHHHHHhcCchhhhhHhhccccchhhHHHHHHHHHHHhHHHHHH
Confidence 555454 99999888877666554311 11111222211111111 11111 1112567778889999999999999
Q ss_pred HHHhhcchHHHHHHHHHHhH
Q 033644 85 HYRMKRDFVNGAVGGFVAGA 104 (114)
Q Consensus 85 ~~Rgk~D~~N~~~aG~~tGa 104 (114)
+++-+||-.|+++||.+++-
T Consensus 322 ~v~n~dd~l~aifAgglAs~ 341 (460)
T KOG1398|consen 322 KVANKDDKLVAIFAGGLASL 341 (460)
T ss_pred HhccCcHHHHHHHHhhhhhh
Confidence 99999999999999999884
No 13
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.047 Score=34.17 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQL 82 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~ 82 (114)
..+|+.|.-....+|..+|...|++.+.+.-..+..+ ...-++..-+.+-.++.+|+++=++=+++.|.
T Consensus 4 qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~--g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 4 QPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPR--GRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCC--hhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 5699999999888888887777776666421111111 11124445566667788888877777777664
No 14
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.89 E-value=3.6 Score=33.73 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHH
Q 033644 55 LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGAT 105 (114)
Q Consensus 55 ~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rgk~D~~N~~~aG~~tGa~ 105 (114)
.+++...+.+++..+..-.+.|-...|.+.++++|..+||+.++|++.+.-
T Consensus 71 ~~k~~~~~cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~ 121 (460)
T KOG1398|consen 71 DLKVREEACQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASS 121 (460)
T ss_pred HHHHHHHHHhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhh
Confidence 345555566788888888889999999999999999999999999988753
No 15
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=81.83 E-value=6.2 Score=24.83 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=43.7
Q ss_pred CChhhhhcccCCCChHHHHHHHHHHH-HHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHH
Q 033644 1 MDPSELRYLEDEDTPMMKTIKGATFG-LVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVY 76 (114)
Q Consensus 1 ~~~~~~~~~~~~~~c~~k~~~~~~~G-~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f 76 (114)
|||+...-+..+-.-++|.+.-+..+ +..++..|++....+-.. .|.+.+++...+-.....++++.+|
T Consensus 1 ~~~~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a-------~~~l~~~l~nlaI~igava~~~~L~ 70 (75)
T PF11998_consen 1 MDPEQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA-------GPDLNEALPNLAIQIGAVALFAFLF 70 (75)
T ss_pred CCHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CccHHHHhhhHhHHHHHHHHHHHHH
Confidence 88988887777778889999888754 556677777776642000 1234455555554445555666555
No 16
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=77.81 E-value=17 Score=24.00 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVAT 39 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~ 39 (114)
.+.+...+...++.|+++|.+.++..+.
T Consensus 3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~~ 30 (128)
T PF02466_consen 3 PERILDSTGKGFVAGAVFGGFIGAISAF 30 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999653
No 17
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=76.65 E-value=5.6 Score=24.35 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCcchhh
Q 033644 24 TFGLVSGTIFGTVVATWQDVPRVER 48 (114)
Q Consensus 24 ~~G~~~G~~~G~~~~~~~~~p~~~~ 48 (114)
+.|+++|++.|...+.+. .|+.+.
T Consensus 2 ~~g~l~Ga~~Ga~~glL~-aP~sG~ 25 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLF-APKSGK 25 (74)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCcH
Confidence 456677777777777664 566543
No 18
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=74.44 E-value=28 Score=24.71 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred ChhhhhcccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 033644 2 DPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVV 37 (114)
Q Consensus 2 ~~~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~ 37 (114)
+++|+..++ .+...-++-....+.=+|.++|.+.
T Consensus 12 ~~~~l~~iP--~P~~el~iHvt~k~~q~gs~lGsl~ 45 (155)
T PF08560_consen 12 SDEELQDIP--NPKTELTIHVTFKGAQAGSFLGSLI 45 (155)
T ss_pred CHHHHhcCC--CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777655 5555555555666666666666555
No 19
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=70.51 E-value=28 Score=23.03 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 033644 23 ATFGLVSGTIFGTVVATW-QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFV 101 (114)
Q Consensus 23 ~~~G~~~G~~~G~~~~~~-~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rgk~D~~N~~~aG~~ 101 (114)
+...+.+|.+.|+.-+.. |+.|... |+.-..+...|++|+++-.+++- +-..|..++-+.
T Consensus 8 ~~i~fiiGs~~GL~ySYkKy~~P~v~------------k~iD~~ALv~aiiG~~~~~vn~~-------~~~~~~~ig~~l 68 (99)
T PF09877_consen 8 YIILFIIGSFLGLEYSYKKYREPFVE------------KKIDKLALVLAIIGGLILAVNSP-------SSPILYTIGAFL 68 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhh------------hcccHHHHHHHHHHHHHHHhcCc-------chhHHHHHHHHH
Confidence 345566777777755543 2344322 33334567788999997777776 456777788888
Q ss_pred HhHHHhhhhcC
Q 033644 102 AGATVLGYKGI 112 (114)
Q Consensus 102 tGa~vlG~r~~ 112 (114)
.| .++|+|.+
T Consensus 69 i~-~~~GmRPG 78 (99)
T PF09877_consen 69 IG-FPLGMRPG 78 (99)
T ss_pred Hh-hhccCCCC
Confidence 88 48999854
No 20
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=66.87 E-value=3.3 Score=26.00 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVV 37 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~ 37 (114)
.+-|+..++.-...|+.+|.+++++.
T Consensus 22 wD~cl~~~l~k~~~G~~~G~~~s~l~ 47 (75)
T PF04418_consen 22 WDRCLSDTLVKTGLGFGIGVVFSLLF 47 (75)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 55677666666666666666665543
No 21
>PLN02720 complex II
Probab=60.41 E-value=23 Score=24.72 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHhhh
Q 033644 50 VALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGY 109 (114)
Q Consensus 50 ~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rgk~D~~N~~~aG~~tGa~vlG~ 109 (114)
+..||++.+ +....++..-+++|++..+.-+ ..+=|.-|...-++.+|.+.|. ++|-
T Consensus 54 VyGPqLk~~-rea~~fa~~Ga~vGa~~tag~a-~kysk~phga~lsfl~G~~~G~-~~G~ 110 (140)
T PLN02720 54 VYGPQLKTM-REAATFAVTGAAVGAVSTAGVA-WKYSKSPHGAALAFLGGGVFGW-AFGQ 110 (140)
T ss_pred CcchHHHHH-HHHHHHHhhhhhhhhhhhhHHH-HHhhcCCchHHHHHhccchhhh-hHhH
Confidence 445555443 4445555555666666544432 3444556888888888888886 5653
No 22
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.97 E-value=32 Score=20.96 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033644 24 TFGLVSGTIFGTVVATW 40 (114)
Q Consensus 24 ~~G~~~G~~~G~~~~~~ 40 (114)
+.++++|++.|+|.+-.
T Consensus 4 ilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666666554
No 23
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=55.81 E-value=33 Score=23.27 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchh
Q 033644 21 KGATFGLVSGTIFGTVVATWQDVPRVE 47 (114)
Q Consensus 21 ~~~~~G~~~G~~~G~~~~~~~~~p~~~ 47 (114)
.+++.|.++|++.|+..+.+. +|..+
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~-AP~sG 30 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLF-APKSG 30 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHh-CCccc
Confidence 356778888888888777764 56543
No 24
>PLN02806 complex I subunit
Probab=54.98 E-value=25 Score=22.36 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc
Q 033644 21 KGATFGLVSGTIFGTVVATWQDVPR 45 (114)
Q Consensus 21 ~~~~~G~~~G~~~G~~~~~~~~~p~ 45 (114)
..++.|+++|+..-++..++...|.
T Consensus 4 ~~t~~GA~lGlg~qlysNalRKLP~ 28 (81)
T PLN02806 4 TATVVGALLGLGTQLYSNALRKLPL 28 (81)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhCcc
Confidence 3456666666666666666543443
No 25
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.10 E-value=13 Score=25.05 Aligned_cols=16 Identities=44% Similarity=0.887 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHhhhhc
Q 033644 94 NGAVGGFVAGATVLGYKG 111 (114)
Q Consensus 94 N~~~aG~~tGa~vlG~r~ 111 (114)
-+.++||++| ++|+.+
T Consensus 33 ~s~i~G~aAG--ILGltg 48 (110)
T KOG4455|consen 33 SSAIAGCAAG--ILGLTG 48 (110)
T ss_pred HHHHHHHHHH--Hhhhhh
Confidence 3688999999 488764
No 26
>PRK04032 hypothetical protein; Provisional
Probab=47.49 E-value=94 Score=22.24 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033644 16 MMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91 (114)
Q Consensus 16 ~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rgk~D 91 (114)
+.||++..+.|.+.+.+.+.+...+. |.... .+-..--.+...++++-+=-.+|+.+.|-.+-+|
T Consensus 35 P~KTwEG~iGGv~~~~l~~~~~~~~~--~~~~~---------~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD 99 (159)
T PRK04032 35 DGKTWRGLIGGILFGTLVGLIQNLLV--PAYIG---------ALGVAIILAFLLSFGALLGDMLGSFIKRRLGLER 99 (159)
T ss_pred CCCcHHHhHHHHHHHHHHHHHHHHHH--ccchh---------HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC
Confidence 57999999999888888877776542 11000 0111122344555666666779999999999888
No 27
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.90 E-value=30 Score=20.43 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=14.2
Q ss_pred HHHHHHHHHHh-hcchHHHH
Q 033644 78 GVEQLVQHYRM-KRDFVNGA 96 (114)
Q Consensus 78 ~~ec~~e~~Rg-k~D~~N~~ 96 (114)
-++-.++.+|. +||+.|-+
T Consensus 8 ~~~~~~~~lR~~RHD~~NhL 27 (62)
T PF14689_consen 8 ELEELIDSLRAQRHDFLNHL 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 35566777887 69999975
No 28
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=41.49 E-value=64 Score=20.46 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=22.2
Q ss_pred HHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHh
Q 033644 55 LIRTLKMMG------NYGMTFAAIGGVYIGVEQLVQHYRM 88 (114)
Q Consensus 55 ~~~~~~~~~------~~~~~fa~~g~~f~~~ec~~e~~Rg 88 (114)
+++.+++.| ..+.++..+|..|..++..++ ++.
T Consensus 3 ~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~GvD-v~~ 41 (91)
T PF06916_consen 3 LKQLFKKYGYVALGVYLGLSFISLGSCYLAVSSGVD-VIA 41 (91)
T ss_pred HHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhhhh-HHH
Confidence 456666666 456677778888887777655 444
No 29
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=38.49 E-value=35 Score=20.39 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=14.3
Q ss_pred CChhhhhcccCC---CChHHHHHHHHHHHHHH
Q 033644 1 MDPSELRYLEDE---DTPMMKTIKGATFGLVS 29 (114)
Q Consensus 1 ~~~~~~~~~~~~---~~c~~k~~~~~~~G~~~ 29 (114)
||-+|+..++-. .+|....+.....|...
T Consensus 8 L~~eeL~~I~GG~~~~~~~~~~~~~~~~G~~~ 39 (65)
T PF10439_consen 8 LDEEELSSIEGGNSWGNCVGGVGGGAAGGAAA 39 (65)
T ss_pred cCHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 456677666644 34444444444433333
No 30
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=38.24 E-value=18 Score=25.41 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcchHHH
Q 033644 79 VEQLVQHYRMKRDFVNG 95 (114)
Q Consensus 79 ~ec~~e~~Rgk~D~~N~ 95 (114)
.|.+++++|.-+|.||+
T Consensus 9 ~etA~~KVr~AEdaWNs 25 (143)
T PF07080_consen 9 RETAIQKVRAAEDAWNS 25 (143)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 47789999999999996
No 31
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=38.15 E-value=43 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033644 15 PMMKTIKGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 15 c~~k~~~~~~~G~~~G~~~G~~~~~~ 40 (114)
-..+...+.+.|.++|++||++...|
T Consensus 84 ~~~~~~~dlL~G~liGff~g~~~~~~ 109 (140)
T PF13373_consen 84 SNSGHNDDLLWGLLIGFFFGLFSLFW 109 (140)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHH
Confidence 35677888999999999999998665
No 32
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.25 E-value=21 Score=24.81 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcchHHH
Q 033644 79 VEQLVQHYRMKRDFVNG 95 (114)
Q Consensus 79 ~ec~~e~~Rgk~D~~N~ 95 (114)
.|-+++++|--+|.||+
T Consensus 11 ~eta~~kvr~aed~wns 27 (154)
T COG3558 11 AETAIQKVRMAEDAWNS 27 (154)
T ss_pred HHHHHHHHHHhHhcccc
Confidence 36678999999999997
No 33
>PLN02453 complex I subunit
Probab=31.35 E-value=39 Score=22.57 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=17.8
Q ss_pred HhhcchHHHHHHHHHHhHHHhhh
Q 033644 87 RMKRDFVNGAVGGFVAGATVLGY 109 (114)
Q Consensus 87 Rgk~D~~N~~~aG~~tGa~vlG~ 109 (114)
|.++||-|..+-++....+++++
T Consensus 56 rkwEdWE~p~Y~~~~~t~vil~V 78 (105)
T PLN02453 56 RKWEDWELPCYITSFLTIVILGV 78 (105)
T ss_pred cccccchhhHHHHHHHHHHHHhe
Confidence 78999999999777765556654
No 34
>PRK11677 hypothetical protein; Provisional
Probab=29.19 E-value=73 Score=22.10 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033644 20 IKGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 20 ~~~~~~G~~~G~~~G~~~~~~ 40 (114)
|...+.|+++|++.|++..-+
T Consensus 3 W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445667777788877777764
No 35
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=28.54 E-value=25 Score=20.22 Aligned_cols=10 Identities=40% Similarity=0.667 Sum_probs=5.9
Q ss_pred CChhhhhccc
Q 033644 1 MDPSELRYLE 10 (114)
Q Consensus 1 ~~~~~~~~~~ 10 (114)
|||+|++..-
T Consensus 11 ~DPeE~k~km 20 (51)
T PF15178_consen 11 MDPEEMKRKM 20 (51)
T ss_pred CCHHHHHHHH
Confidence 5666666533
No 36
>PRK00523 hypothetical protein; Provisional
Probab=28.46 E-value=1.5e+02 Score=18.43 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 033644 24 TFGLVSGTIFGTVVAT 39 (114)
Q Consensus 24 ~~G~~~G~~~G~~~~~ 39 (114)
+.++.+|++.|+|.+-
T Consensus 12 i~~li~G~~~Gffiar 27 (72)
T PRK00523 12 IPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556666665554
No 37
>PRK01844 hypothetical protein; Provisional
Probab=28.32 E-value=1.5e+02 Score=18.42 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 033644 24 TFGLVSGTIFGTVVAT 39 (114)
Q Consensus 24 ~~G~~~G~~~G~~~~~ 39 (114)
+.++.+|++.|+|.+-
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666554
No 38
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only]
Probab=27.90 E-value=2.6e+02 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033644 14 TPMMKTIKGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 14 ~c~~k~~~~~~~G~~~G~~~G~~~~~~ 40 (114)
.-...-+.+++.|..+|+..|..+-.+
T Consensus 206 t~~ahLv~DFiAG~LLGA~l~~~FFPi 232 (297)
T KOG1519|consen 206 THSAHLVNDFIAGGLLGAMLGFLFFPI 232 (297)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhhccH
Confidence 445566778888888888888776554
No 39
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=27.36 E-value=71 Score=21.34 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033644 20 IKGATFGLVSGTIFGTVV 37 (114)
Q Consensus 20 ~~~~~~G~~~G~~~G~~~ 37 (114)
|.+...++++|++.|++.
T Consensus 84 Wq~VGvaAaVGlllGlLl 101 (104)
T COG4575 84 WQGVGVAAAVGLLLGLLL 101 (104)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344556666677766654
No 40
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=26.69 E-value=79 Score=17.43 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=14.7
Q ss_pred HhhcchHHHHHHHHHHhHHHhh
Q 033644 87 RMKRDFVNGAVGGFVAGATVLG 108 (114)
Q Consensus 87 Rgk~D~~N~~~aG~~tGa~vlG 108 (114)
..+++-+...+.|.+.|+ ++|
T Consensus 18 g~~~g~~~g~~~Ga~~Ga-~~G 38 (42)
T PF05433_consen 18 GGGNGRTLGAVAGAVAGA-LIG 38 (42)
T ss_pred cCCCCcHHHHHHHHHHHH-HHH
Confidence 345667777788888887 465
No 41
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=26.01 E-value=97 Score=19.51 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033644 20 IKGATFGLVSGTIFGTVV 37 (114)
Q Consensus 20 ~~~~~~G~~~G~~~G~~~ 37 (114)
+.+.+.++++|++.|++.
T Consensus 74 ~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 74 WQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666677766654
No 42
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=25.34 E-value=43 Score=20.66 Aligned_cols=15 Identities=40% Similarity=0.860 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHhhhhc
Q 033644 95 GAVGGFVAGATVLGYKG 111 (114)
Q Consensus 95 ~~~aG~~tGa~vlG~r~ 111 (114)
++++|+++| ++|+++
T Consensus 11 a~~~Gi~aG--ILgLtg 25 (81)
T PF07019_consen 11 ALLAGIAAG--ILGLTG 25 (81)
T ss_pred HHHHHHHhh--hccccc
Confidence 788999999 488764
No 43
>PF13084 DUF3943: Domain of unknown function (DUF3943)
Probab=25.23 E-value=84 Score=21.03 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHhH
Q 033644 66 GMTFAAIGGVYIGVEQLVQHYRMK---RDFVNGAVGGFVAGA 104 (114)
Q Consensus 66 ~~~fa~~g~~f~~~ec~~e~~Rgk---~D~~N~~~aG~~tGa 104 (114)
...++..+.++ -|..+|..+.+ +|..++-++|.+-|=
T Consensus 38 S~~~t~~~S~~--WE~~~E~f~e~PSinDli~Tp~~G~~lGE 77 (107)
T PF13084_consen 38 SFLYTFAGSTF--WEYGGEAFAEPPSINDLIVTPIGGSVLGE 77 (107)
T ss_pred HHHHHHHHHHH--HHHHHhhcCCCCCHHHhhccchhHHHHHH
Confidence 45566677776 89999986665 889988888888774
No 44
>PRK10132 hypothetical protein; Provisional
Probab=24.06 E-value=1.1e+02 Score=20.36 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033644 20 IKGATFGLVSGTIFGTVV 37 (114)
Q Consensus 20 ~~~~~~G~~~G~~~G~~~ 37 (114)
+.+.+.++++|++.|++.
T Consensus 87 w~svgiaagvG~llG~Ll 104 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566677777777764
No 45
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=23.49 E-value=1.8e+02 Score=22.39 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033644 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91 (114)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rgk~D 91 (114)
+.--+.||++..+.|.+.+.+.+.+.+.+...+. + .. ..--.+...++++-+=-.+|+.++|-.+-+|
T Consensus 182 P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~--~-----~~-----~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKD 249 (285)
T PRK11624 182 PKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDV--A-----PV-----TLLICSIVAALASVLGDLTESMFKREAGIKD 249 (285)
T ss_pred CcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccc--c-----HH-----HHHHHHHHHHHHHHHhHHHHHHHhhccCCCC
Confidence 3445678888888888777777766655321100 0 00 0011112222333333458999999888888
Q ss_pred hHH
Q 033644 92 FVN 94 (114)
Q Consensus 92 ~~N 94 (114)
.=|
T Consensus 250 SG~ 252 (285)
T PRK11624 250 SGH 252 (285)
T ss_pred CcC
Confidence 654
No 46
>COG3768 Predicted membrane protein [Function unknown]
Probab=23.29 E-value=2.9e+02 Score=22.23 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHHHHHHHHH-----HHHHHHHHHhhcchHHHHHHHHHHhHHHh
Q 033644 69 FAAIGGVYIG-----VEQLVQHYRMKRDFVNGAVGGFVAGATVL 107 (114)
Q Consensus 69 fa~~g~~f~~-----~ec~~e~~Rgk~D~~N~~~aG~~tGa~vl 107 (114)
++..|.+|+. ++..+.++=+++||. .+++++.+++++
T Consensus 68 ~~a~~vLf~~Av~~q~~qwi~d~~qr~dWl--~~~a~~v~~l~v 109 (350)
T COG3768 68 LGAGGVLFSLAVGLQSVQWIRDLFQRADWL--GLGAAAVGALIV 109 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHH
Confidence 3444444444 455667777799999 556666665433
No 47
>PHA00438 hypothetical protein
Probab=22.51 E-value=1.9e+02 Score=18.40 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=16.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHhH
Q 033644 82 LVQHYRMKRDFVNGAVGGFVAGA 104 (114)
Q Consensus 82 ~~e~~Rgk~D~~N~~~aG~~tGa 104 (114)
.+..+|+ +-+--++|+||+.|.
T Consensus 40 ~i~~lR~-~G~SE~~IaGfl~Gl 61 (81)
T PHA00438 40 EIRLLRQ-AGYSEAFIAGFLAGL 61 (81)
T ss_pred hHHHHHH-cCCcHHHHHHHHHHH
Confidence 4566777 668888888888885
No 48
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=2e+02 Score=20.08 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 033644 16 MMKTIKGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 16 ~~k~~~~~~~G~~~G~~~G~~~~~~ 40 (114)
..-+|...+.|+++|.++|++..-+
T Consensus 4 t~~~W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 4 TFMTWEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788889999988888775
No 49
>COG2035 Predicted membrane protein [Function unknown]
Probab=20.98 E-value=2.1e+02 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc----chHHHHHHHHHHhHH
Q 033644 71 AIGGVYIGVEQLVQHYRMKR----DFVNGAVGGFVAGAT 105 (114)
Q Consensus 71 ~~g~~f~~~ec~~e~~Rgk~----D~~N~~~aG~~tGa~ 105 (114)
..|.+..+.--..++.+... +..|-+++|+++...
T Consensus 121 i~gfii~~~~~~~~~~~~~~~~~~~~i~~~~aGavAa~A 159 (276)
T COG2035 121 ILGFIILGLILYLNNIQTASITTGYLILLFIAGAVAACA 159 (276)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 34455555555555555554 899999999887653
No 50
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=20.51 E-value=49 Score=20.47 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhh-cchHH
Q 033644 73 GGVYIGVEQLVQHYRMK-RDFVN 94 (114)
Q Consensus 73 g~~f~~~ec~~e~~Rgk-~D~~N 94 (114)
|-+|+++--.++.-|.+ |||++
T Consensus 44 GeLFscV~~tLeEcRr~rd~WL~ 66 (69)
T PF12989_consen 44 GELFSCVAPTLEECRRLRDEWLS 66 (69)
T ss_pred ccchhhhhccHHHHHHHHHHHHh
Confidence 56788888888888876 55554
No 51
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=20.49 E-value=1.2e+02 Score=16.11 Aligned_cols=19 Identities=21% Similarity=0.635 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHhHHHhhh
Q 033644 90 RDFVNGAVGGFVAGATVLGY 109 (114)
Q Consensus 90 ~D~~N~~~aG~~tGa~vlG~ 109 (114)
||.--++++|.+++. +++.
T Consensus 12 hDLAAP~iagIi~s~-iv~w 30 (35)
T PF13940_consen 12 HDLAAPIIAGIIASL-IVGW 30 (35)
T ss_pred HHhHhHHHHHHHHHH-HHHH
Confidence 788889999999996 5664
No 52
>TIGR02662 dinitro_DRAG ADP-ribosyl-[dinitrogen reductase] hydrolase. Members of this family are the enzyme ADP-ribosyl-[dinitrogen reductase] hydrolase (EC 3.2.2.24), better known as Dinitrogenase Reductase Activating Glycohydrolase, DRAG. This enzyme reverses a regulatory inactivation of dinitrogen reductase caused by the action of NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase (EC 2.4.2.37) (DRAT). This enzyme is restricted to nitrogen-fixing bacteria and belongs to the larger family of ADP-ribosylglycohydrolases described by Pfam model pfam03747.
Probab=20.26 E-value=2.5e+02 Score=21.22 Aligned_cols=16 Identities=44% Similarity=0.833 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHHhhh
Q 033644 93 VNGAVGGFVAGATVLGY 109 (114)
Q Consensus 93 ~N~~~aG~~tGa~vlG~ 109 (114)
.|+.++|.+.|+ ..|+
T Consensus 241 T~aai~GaL~Ga-~~G~ 256 (287)
T TIGR02662 241 TTGAIAGMLAGA-TYGV 256 (287)
T ss_pred HHHHHHHHHHHH-HhCc
Confidence 344555555554 3554
No 53
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=20.10 E-value=3.8e+02 Score=21.34 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHhH
Q 033644 64 NYGMTFAAIGGVYIGVEQLVQHYRMK----RDFVNGAVGGFVAGA 104 (114)
Q Consensus 64 ~~~~~fa~~g~~f~~~ec~~e~~Rgk----~D~~N~~~aG~~tGa 104 (114)
-.+...+++|.+|.-....++++|.| +.++-.+++|.++|.
T Consensus 212 llGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~~~ 256 (402)
T cd01031 212 LLGIIAGLLGYLFNRSLLKSQDLYRKLKKLPRELRVLLPGLLIGP 256 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence 44666777888887776666777655 467888899998885
No 54
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.00 E-value=1.7e+02 Score=19.82 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033644 15 PMMKTIKGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 15 c~~k~~~~~~~G~~~G~~~G~~~~~~ 40 (114)
-.+|....++.|.++|.++|.+..-+
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778888899999999999988875
Done!