Query 033644
Match_columns 114
No_of_seqs 101 out of 619
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imj_A Hypothetical protein DU 36.3 13 0.00044 25.7 1.2 16 80-95 17-32 (166)
2 2jm6_A NOXA; apoptosis, BCL-2, 26.3 36 0.0012 16.3 1.5 15 79-95 6-20 (27)
3 2keg_A PLNK; protein, peptide, 22.5 80 0.0027 15.4 2.5 16 25-40 8-23 (32)
4 1ixm_A SPO0B, protein (sporula 19.9 66 0.0022 22.2 2.5 24 77-100 16-42 (192)
5 2elu_A Zinc finger protein 406 17.6 30 0.001 17.7 0.2 15 78-92 21-35 (37)
6 1pfi_A Major coat protein of P 13.8 1.7E+02 0.006 15.5 3.4 17 88-106 15-31 (46)
7 2kqs_B Death domain-associated 13.8 42 0.0014 16.1 0.1 13 2-14 11-23 (26)
8 1ots_A Voltage-gated CLC-type 13.3 4.6E+02 0.016 20.3 6.1 41 64-104 257-304 (465)
9 4fc4_A Nitrite transporter NIR 13.0 2.6E+02 0.0087 20.3 4.3 16 68-83 29-44 (261)
10 2oar_A Large-conductance mecha 12.7 2.1E+02 0.0072 19.8 3.5 21 20-40 37-57 (174)
No 1
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=36.26 E-value=13 Score=25.70 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcchHHH
Q 033644 80 EQLVQHYRMKRDFVNG 95 (114)
Q Consensus 80 ec~~e~~Rgk~D~~N~ 95 (114)
|.+++++|.-+|.||+
T Consensus 17 EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 17 ESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcc
Confidence 6678899999999997
No 2
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=26.28 E-value=36 Score=16.29 Aligned_cols=15 Identities=33% Similarity=0.056 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhcchHHH
Q 033644 79 VEQLVQHYRMKRDFVNG 95 (114)
Q Consensus 79 ~ec~~e~~Rgk~D~~N~ 95 (114)
+||+ ++|.--|-+|-
T Consensus 6 veca--qlr~~gdkln~ 20 (27)
T 2jm6_A 6 DECA--QLRRIGDKVNL 20 (27)
T ss_dssp HHHH--HHHHHHHHHHH
T ss_pred HHHH--HHHHHhHHHHH
Confidence 5787 77877777763
No 3
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=22.51 E-value=80 Score=15.40 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 033644 25 FGLVSGTIFGTVVATW 40 (114)
Q Consensus 25 ~G~~~G~~~G~~~~~~ 40 (114)
.|..+|..||.++-+.
T Consensus 8 igyaigyafgaverav 23 (32)
T 2keg_A 8 IGYAIGYAFGAVERAV 23 (32)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cceeehhhhhHHHHHH
Confidence 3677888888877664
No 4
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=19.88 E-value=66 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHh-hcchHHHH--HHHH
Q 033644 77 IGVEQLVQHYRM-KRDFVNGA--VGGF 100 (114)
Q Consensus 77 ~~~ec~~e~~Rg-k~D~~N~~--~aG~ 100 (114)
++++-.++.+|. +||+.|-+ +.|.
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GL 42 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGN 42 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455667788888 59999954 4554
No 5
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=17.61 E-value=30 Score=17.67 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhcch
Q 033644 78 GVEQLVQHYRMKRDF 92 (114)
Q Consensus 78 ~~ec~~e~~Rgk~D~ 92 (114)
-+.-.+..+|..+|+
T Consensus 21 dvknlikhire~hd~ 35 (37)
T 2elu_A 21 DVKNLIKHIRDAHDP 35 (37)
T ss_dssp SHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 344556677887775
No 6
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=13.83 E-value=1.7e+02 Score=15.55 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=11.6
Q ss_pred hhcchHHHHHHHHHHhHHH
Q 033644 88 MKRDFVNGAVGGFVAGATV 106 (114)
Q Consensus 88 gk~D~~N~~~aG~~tGa~v 106 (114)
+|.|.. -++|.+.|+++
T Consensus 15 G~~Dm~--si~~~IVGaLv 31 (46)
T 1pfi_A 15 GQGDMK--AIGGYIVGALV 31 (46)
T ss_dssp HTHHHH--HHHHHHHHHHH
T ss_pred CCccHH--HHHHHHHHHHH
Confidence 677776 46777777644
No 7
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=13.76 E-value=42 Score=16.08 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=9.5
Q ss_pred ChhhhhcccCCCC
Q 033644 2 DPSELRYLEDEDT 14 (114)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (114)
+|.|++.+.+.+.
T Consensus 11 dP~evivlsds~~ 23 (26)
T 2kqs_B 11 DPEEIIVLSDSDX 23 (26)
T ss_pred CcceEEEcccccc
Confidence 6888888887553
No 8
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=13.29 E-value=4.6e+02 Score=20.28 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh----cch---HHHHHHHHHHhH
Q 033644 64 NYGMTFAAIGGVYIGVEQLVQHYRMK----RDF---VNGAVGGFVAGA 104 (114)
Q Consensus 64 ~~~~~fa~~g~~f~~~ec~~e~~Rgk----~D~---~N~~~aG~~tGa 104 (114)
-.+..++++|.+|.-.--.+++.+.| ..+ +-.+++|.++|.
T Consensus 257 llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~ 304 (465)
T 1ots_A 257 ILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGL 304 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHH
Confidence 34556677778887666666666654 223 556788888885
No 9
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=12.97 E-value=2.6e+02 Score=20.30 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033644 68 TFAAIGGVYIGVEQLV 83 (114)
Q Consensus 68 ~fa~~g~~f~~~ec~~ 83 (114)
.-++.+++|-+.-...
T Consensus 29 ~~~~~AG~~I~~g~~~ 44 (261)
T 4fc4_A 29 VSSAMAGAYVGLGIIL 44 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666555443
No 10
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=12.74 E-value=2.1e+02 Score=19.81 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033644 20 IKGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 20 ~~~~~~G~~~G~~~G~~~~~~ 40 (114)
+.+...|.++|+.|+.+..++
T Consensus 37 ViDLAVgVIIGaAF~~IVtSl 57 (174)
T 2oar_A 37 IVDLAVAVVIGTAFTALVTKF 57 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888886
Done!