Query 033644
Match_columns 114
No_of_seqs 101 out of 619
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033644.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033644hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 32.7 7.4 0.00054 25.0 1.2 16 80-95 13-28 (155)
2 d2e9xb2 d.344.1.2 (B:1-61) DNA 25.5 8.3 0.00061 21.0 0.3 11 1-11 1-11 (61)
3 d1vpua_ g.34.1.1 (A:) HIV-1 VP 17.7 37 0.0027 17.1 1.9 16 79-94 3-19 (45)
4 d1q90r_ f.23.12.1 (R:) ISP sub 14.4 62 0.0045 15.7 2.2 21 88-109 8-28 (39)
5 d2o35a1 a.293.1.1 (A:2-80) Hyp 12.5 53 0.0039 18.4 1.8 18 78-95 15-32 (79)
6 d1v54a_ f.24.1.1 (A:) Mitochon 11.0 2.4E+02 0.018 20.7 5.8 41 55-95 449-489 (514)
7 d1mcvi_ g.3.2.1 (I:) Trypsin i 10.9 0.31 2.3E-05 22.5 -6.9 21 81-103 2-22 (28)
8 d1t5ja_ a.209.1.1 (A:) Hypothe 9.4 1.5E+02 0.011 19.3 3.7 32 78-110 240-272 (301)
9 d2oo2a1 a.8.11.1 (A:1-75) Hypo 8.1 99 0.0072 17.0 1.9 14 85-98 42-55 (75)
10 d2oara1 f.16.1.1 (A:10-118) Ga 8.1 2E+02 0.015 16.6 3.5 20 21-40 6-25 (109)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=32.72 E-value=7.4 Score=24.99 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcchHHH
Q 033644 80 EQLVQHYRMKRDFVNG 95 (114)
Q Consensus 80 ec~~e~~Rgk~D~~N~ 95 (114)
|.+.+++|.-+|.||+
T Consensus 13 etA~~KVr~AEdaWNs 28 (155)
T d2imja1 13 ESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 6678999999999997
No 2
>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.46 E-value=8.3 Score=20.96 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=6.9
Q ss_pred CChhhhhcccC
Q 033644 1 MDPSELRYLED 11 (114)
Q Consensus 1 ~~~~~~~~~~~ 11 (114)
|||+|+..+.+
T Consensus 1 m~P~E~eFlae 11 (61)
T d2e9xb2 1 MDAAEVEFLAE 11 (61)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHhhhhhc
Confidence 67777666543
No 3
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=17.68 E-value=37 Score=17.10 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=11.7
Q ss_pred HHHHHHHHHhh-cchHH
Q 033644 79 VEQLVQHYRMK-RDFVN 94 (114)
Q Consensus 79 ~ec~~e~~Rgk-~D~~N 94 (114)
+++.++++|.+ +|.-|
T Consensus 3 IdrLi~RIrERAEDSGN 19 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGN 19 (45)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcccCCC
Confidence 46788889987 66655
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.43 E-value=62 Score=15.71 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=15.0
Q ss_pred hhcchHHHHHHHHHHhHHHhhh
Q 033644 88 MKRDFVNGAVGGFVAGATVLGY 109 (114)
Q Consensus 88 gk~D~~N~~~aG~~tGa~vlG~ 109 (114)
+|+...|-+.-|.+++. +.|+
T Consensus 8 grR~~MNLll~G~~~~~-~~g~ 28 (39)
T d1q90r_ 8 NKRNIMNLILAGGAGLP-ITTL 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHhccchh-hhhh
Confidence 45567888888888875 5654
No 5
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=12.48 E-value=53 Score=18.44 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhcchHHH
Q 033644 78 GVEQLVQHYRMKRDFVNG 95 (114)
Q Consensus 78 ~~ec~~e~~Rgk~D~~N~ 95 (114)
.++-.++++|.+.|..|=
T Consensus 15 aFrrL~~HL~~r~dVQNI 32 (79)
T d2o35a1 15 VFRRLLEHLRERSDVQNI 32 (79)
T ss_dssp HHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHhCccchhh
Confidence 346678899999998884
No 6
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.98 E-value=2.4e+02 Score=20.70 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 033644 55 LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNG 95 (114)
Q Consensus 55 ~~~~~~~~~~~~~~fa~~g~~f~~~ec~~e~~Rgk~D~~N~ 95 (114)
..+.+..+|.....++.+-.+|...++...+-+..+|+||+
T Consensus 449 ~~n~~~siG~~i~~~~~~~f~~~~~~s~~~~~~~~~~pw~~ 489 (514)
T d1v54a_ 449 MWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTT 489 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBBCCCTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 34566777777777788888888888877765556788874
No 7
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=10.91 E-value=0.31 Score=22.53 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=11.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHh
Q 033644 81 QLVQHYRMKRDFVNGAVGGFVAG 103 (114)
Q Consensus 81 c~~e~~Rgk~D~~N~~~aG~~tG 103 (114)
|.+|++|-|.|.- -++||+.|
T Consensus 2 ctleym~c~~dsd--clagcvcg 22 (28)
T d1mcvi_ 2 CTLEYMRCKQDSD--CLAGCVCG 22 (28)
T ss_dssp EECCCCBCSSGGG--SCTTCCBC
T ss_pred ccchhhhcccccc--ccccceec
Confidence 4456666666654 34555544
No 8
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.45 E-value=1.5e+02 Score=19.26 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcch-HHHHHHHHHHhHHHhhhh
Q 033644 78 GVEQLVQHYRMKRDF-VNGAVGGFVAGATVLGYK 110 (114)
Q Consensus 78 ~~ec~~e~~Rgk~D~-~N~~~aG~~tGa~vlG~r 110 (114)
..++....++.-.|. .|+.+.|++.|| ..|..
T Consensus 240 f~~ai~~av~~GgDtdt~aai~Gal~GA-~~G~~ 272 (301)
T d1t5ja_ 240 FKEGMLKCINAGGDTDSLASMYGAMAGA-YYGFK 272 (301)
T ss_dssp HHHHHHHHHTSCBSHHHHHHHHHHHHHH-HHCGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHH-HhChh
Confidence 355666666665444 478888888897 67875
No 9
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.11 E-value=99 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=10.7
Q ss_pred HHHhhcchHHHHHH
Q 033644 85 HYRMKRDFVNGAVG 98 (114)
Q Consensus 85 ~~Rgk~D~~N~~~a 98 (114)
+...|.|..|++.+
T Consensus 42 ~fl~~gD~v~A~~~ 55 (75)
T d2oo2a1 42 YFLEKGDLVRAFEC 55 (75)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
Confidence 34578999999864
No 10
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.10 E-value=2e+02 Score=16.56 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033644 21 KGATFGLVSGTIFGTVVATW 40 (114)
Q Consensus 21 ~~~~~G~~~G~~~G~~~~~~ 40 (114)
.+...|.++|+.|+.+..++
T Consensus 6 idLAVgvIiG~AF~~iV~sl 25 (109)
T d2oara1 6 VDLAVAVVIGTAFTALVTKF 25 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888876
Done!