BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033647
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 181 bits (459), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
MFVSIPKA+A+FMKWICH+WS+E C+K LKNCYEALP++GKVIV +CILPV PD+SLA+K
Sbjct: 252 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATK 311
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLK 112
V+ +D MLA+ GG+E T+++F+ LAK AGFQGFKV C+AFNTYIMEFLK
Sbjct: 312 GVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 158 bits (400), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 88/112 (78%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
MF +PK +AIF+KWICH+WS+E C+K+LKNCY ALP+ GKVIV + ILP PD S+A+K
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATK 314
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLK 112
VI D MLAY GG+E TE++F+ LA A+GF+GFKV AFNTY+MEFLK
Sbjct: 315 VVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 122 bits (307), Expect = 4e-29, Method: Composition-based stats.
Identities = 53/112 (47%), Positives = 74/112 (66%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
MF +P + I MKWI H+WS++ C +LKNCY+ALP GKV++V CILPV P+ + +S+
Sbjct: 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQ 312
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLK 112
V +D MLA+ GGRE E++F+ LA+ AGF G K N + +EF K
Sbjct: 313 GVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
MF S+P+ +A+ +K +CHNWS+E C++ L NC++AL +GKVI+V+ ILP P+TS SK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTY-IMEFLK 112
V LD M T+GGRE TE+ ++ L+K +GF F+V C AFN+ +MEF K
Sbjct: 321 LVSTLDNLMF-ITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 113 bits (282), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 2 FVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQ 61
F S+P+ +A +K +CHNWS+E C++ L NC++AL +GKVI+V+ ILP P+TS SK
Sbjct: 262 FASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKL 321
Query: 62 VIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTY-IMEFLK 112
V LD T+GGRE TE+ ++ L+K +GF F+V C AFN+ + EF K
Sbjct: 322 VSTLDNLXF-ITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 9/103 (8%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPED---GKVIVVDCILPVLPDTSL 57
MF+S+PKA+A+ +K + H+W+++ C+KILK C EA+ D GKVIV+D ++ D +
Sbjct: 245 MFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDEN- 303
Query: 58 ASKQVIQLDCFMLAYT--IGGREMTEQDFKTLAKAAGFQGFKV 98
Q+ Q+ M + G+E E+++K L AGFQ +K+
Sbjct: 304 ---QLTQIKLLMNVTISCVNGKERNEEEWKKLFIEAGFQDYKI 343
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPED---GKVIVVDCILPVLPDTSL 57
MF SIP A+A+ +K+I HNW+++ C++ILK C EA+ D GKV ++D ++ D +
Sbjct: 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299
Query: 58 ASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKV 98
++ + +D M + G+E E+++K L AGFQ +K+
Sbjct: 300 VTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKI 338
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALP---EDGKVIVVDCILPVLPDTSL 57
MF SIP A+A+ +KW+ H+W++E +KILKN EA+ +DGKVI++D + D
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 58 ASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV-CSAFNTYI 107
++ + D ML + G+E T+Q+++ L AGF +K+ S F + I
Sbjct: 305 LTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 354
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALP---EDGKVIVVDCILPVLPDTSL 57
MF SIP A+A+ +KW+ H+W++E +KILKN EA+ +DGKVI++D + D
Sbjct: 244 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 303
Query: 58 ASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV-CSAFNTYI 107
++ + D ML + G+E T+Q+++ L AGF +K+ S F + I
Sbjct: 304 LTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 353
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALP---EDGKVIVVDCILPVLPDTSL 57
MF SIP A+A+ +KW+ H+W++E +KILKN EA+ +DGKVI++D + D
Sbjct: 241 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 300
Query: 58 ASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV-CSAFNTYI 107
++ + D ML + G+E T+Q+++ L AGF +K+ S F + I
Sbjct: 301 LTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 350
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 2 FVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPED---GKVIVVDCILPVLPDTSLA 58
F SIP A+A+ +K+I HNW+++ C++ILK C EA+ D GKV ++D ++ D
Sbjct: 241 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVI----DKKKD 296
Query: 59 SKQVIQLDCF--MLAYTIGGREMTEQDFKTLAKAAGFQGFKV 98
QV Q+ + + G+E E+++K L AGFQ +K+
Sbjct: 297 ENQVTQIKLLXDVNXACLNGKERNEEEWKKLFIEAGFQHYKI 338
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 5 IPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQ 64
+P A+ +K I HNW +E V+IL NC P G+V+V+D ++P D + Q +
Sbjct: 245 VPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGND----AHQSKE 300
Query: 65 LDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV 99
D LA G+E T + + L AAG + +VV
Sbjct: 301 XDFXXLAART-GQERTAAELEPLFTAAGLRLDRVV 334
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 2 FVSIP-KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
F +P KA+AI + ++ NW + V+IL C EAL G++++ + L + S ++
Sbjct: 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE--RDDLHENSF-NE 299
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGF 93
Q +LD ML + +GG T + + LA +AG
Sbjct: 300 QFTELDLRMLVF-LGGALRTREKWDGLAASAGL 331
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 5 IPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQ 64
+P+A+ + + H+W++ C +L+ Y G ++V++ +L D + Q
Sbjct: 242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL----DEDRRGPLLTQ 297
Query: 65 LDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFK 97
L + G+E T + L +AGF+ F+
Sbjct: 298 LYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDC 67
A + + H+W + + V IL+ C EA G V+V++ V D + +D
Sbjct: 236 AGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA---VAGDEHAGTG----MDL 288
Query: 68 FMLAYTIGGREMTEQDFKTLAKAAGF 93
ML Y GG+E + + LA AG
Sbjct: 289 RMLTY-FGGKERSLAELGELAAQAGL 313
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 2 FVSIPK-AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
F +IP A+ +K + H+W ++ V+IL+ A D +++V+D ++ P S
Sbjct: 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFV 321
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQ 94
++ +GG E +E +F L + +G +
Sbjct: 322 DLLL------LVLVGGAERSESEFAALLEKSGLR 349
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 2 FVSIP-KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK 60
F +P A+ + + ++ NWS+E + IL+ C AL G+++V+D V D +
Sbjct: 242 FKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD-RADVEGDGADRFF 300
Query: 61 QVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGF 93
+ LD ML + +GGR T + LA +AG
Sbjct: 301 STL-LDLRMLTF-MGGRVRTRDEVVDLAGSAGL 331
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 2 FVSIP-KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46
F +P A+ + + ++ NWS+E + IL+ C AL G+++V+D
Sbjct: 242 FKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 1 MFVSIPKAEAIFM-KWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLAS 59
M +P I++ I + E A +++L NC EA+ DG+V+V++ + + ++
Sbjct: 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSV 285
Query: 60 KQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV 99
+ L FM GR T ++ L GF ++V
Sbjct: 286 LWDVHL--FM---ACAGRHRTTEEVVDLLGRGGFAVERIV 320
>pdb|3BWH|A Chain A, Atomic Resolution Structure Of Cucurmosin, A Novel Type
1 Rip From The Sarcocarp Of Cucurbita Moschata
Length = 245
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 29 LKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDC 67
+KN EALP+DGKV + PVL T + S++ I +D
Sbjct: 18 IKNLREALPKDGKVYDI----PVLLSTVMDSRRFILIDL 52
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 12 FMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLA 71
KW+ NW +E + + Y L G ++V++ P +S ++ + +
Sbjct: 186 LTKWVHLNWGDEGLKRXFRRIYRHL-RPGGILVLE----PQPWSSYGKRKTLTETIYKNY 240
Query: 72 YTIGGREMTEQDFKTL--AKAAGFQGFKVVCSAFNT 105
Y I ++ + F + + GF +++V + NT
Sbjct: 241 YRI---QLKPEQFSSYLTSPDVGFSSYELVATPHNT 273
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 11 IFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS-LASKQVIQLDCFM 69
+ + H++ C ++L+ AL +GKVIV D I P++ +
Sbjct: 236 VLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI----PNSDRITPPDAAAFSLVX 291
Query: 70 LAYTIGGREMTEQDFKTLAKAAGF 93
LA T G T ++++ AGF
Sbjct: 292 LATTPNGDAYTFAEYESXFSNAGF 315
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 71 AYTIGGREM-TEQDFKTLAKAAGFQGFKVVCSA 102
+Y IG R + TEQ+FK + AA G KV+ A
Sbjct: 63 SYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDA 95
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 71 AYTIGGREM-TEQDFKTLAKAAGFQGFKVVCSA 102
+Y IG R + TEQ+FK + AA G KV+ A
Sbjct: 66 SYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDA 98
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 18 HNWSEEACV-KILKNCYEALPEDGKVIVVDC 47
H + EEA + + +KN YEA+ D +V+D
Sbjct: 192 HGYGEEAALLEEMKNIYEAIKPDEVTLVIDA 222
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 18 HNWSEEACV-KILKNCYEALPEDGKVIVVDC 47
H + EEA + + +KN YEA+ D +V+D
Sbjct: 192 HGYGEEAALLEEMKNIYEAIKPDEVTLVIDA 222
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 26 VKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFK 85
+K L+N A P DG+ V L V+PD + V YT+ T DF
Sbjct: 241 IKQLQNAIGAAPVDGEYAVECANLNVMPDVTFTINGV--------PYTLSPTAYTLLDFV 292
Query: 86 TLAK--AAGFQGFKV 98
+ ++GFQG +
Sbjct: 293 DGMQFCSSGFQGLDI 307
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 WSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS 56
WS A IL+N YEA G ++D + +L + S
Sbjct: 503 WSPAAVPWILQNVYEAYEYSGDPALLDRVYALLKEES 539
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 WSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS 56
WS A IL+N YEA G ++D + +L + S
Sbjct: 502 WSPAAVPWILQNVYEAYEYSGDPALLDRVYALLKEES 538
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 WSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS 56
WS A IL+N YEA G ++D + +L + S
Sbjct: 503 WSPAAVPWILQNVYEAYEYSGDPALLDRVYALLKEES 539
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCF 68
+A++M +SEE + IL +++ +D KV +++ + AS + Q+ +
Sbjct: 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD-RQRYETASYCLTQISLY 308
Query: 69 MLAYTIGGREMTEQD 83
A G +M D
Sbjct: 309 FTAMANGNSKMFHSD 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,372,269
Number of Sequences: 62578
Number of extensions: 116847
Number of successful extensions: 433
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 33
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)