Query 033647
Match_columns 114
No_of_seqs 110 out of 1048
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 2.6E-25 5.7E-30 158.7 8.5 112 1-112 230-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 1.6E-23 3.4E-28 145.1 6.5 88 1-89 152-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.7 7.9E-16 1.7E-20 110.0 10.1 96 1-99 208-305 (306)
4 PF05891 Methyltransf_PK: AdoM 99.5 1.1E-13 2.5E-18 94.1 6.3 83 3-99 117-200 (218)
5 TIGR00740 methyltransferase, p 99.3 2E-12 4.3E-17 89.5 2.0 105 5-111 120-238 (239)
6 PRK15451 tRNA cmo(5)U34 methyl 99.0 6.2E-11 1.3E-15 82.6 1.4 107 5-111 123-241 (247)
7 PTZ00098 phosphoethanolamine N 99.0 3E-09 6.5E-14 74.9 9.5 91 4-102 112-204 (263)
8 PLN02233 ubiquinone biosynthes 99.0 5.1E-09 1.1E-13 73.6 9.8 99 8-110 146-259 (261)
9 PLN02232 ubiquinone biosynthes 99.0 3E-09 6.5E-14 69.7 7.5 99 8-110 45-158 (160)
10 PF13489 Methyltransf_23: Meth 98.9 6.6E-09 1.4E-13 67.0 7.1 82 8-97 79-160 (161)
11 PF01209 Ubie_methyltran: ubiE 98.9 5.7E-10 1.2E-14 77.3 2.1 104 5-112 112-233 (233)
12 PRK00216 ubiE ubiquinone/menaq 98.9 3.1E-08 6.6E-13 67.8 10.0 100 8-112 122-238 (239)
13 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.8E-08 3.9E-13 68.3 8.7 100 8-112 107-223 (223)
14 PF06080 DUF938: Protein of un 98.9 2.7E-08 5.9E-13 67.5 8.7 101 8-111 103-203 (204)
15 PLN02490 MPBQ/MSBQ methyltrans 98.8 3.6E-08 7.7E-13 71.8 9.8 81 8-103 179-259 (340)
16 TIGR02752 MenG_heptapren 2-hep 98.8 3.2E-08 7E-13 67.9 8.4 99 8-112 115-231 (231)
17 PRK11873 arsM arsenite S-adeno 98.8 6.2E-08 1.3E-12 68.2 9.1 84 8-100 147-230 (272)
18 TIGR00452 methyltransferase, p 98.8 1.1E-07 2.4E-12 68.6 10.0 86 8-101 189-274 (314)
19 COG2226 UbiE Methylase involve 98.8 1.1E-07 2.4E-12 66.1 9.6 104 4-112 114-237 (238)
20 PRK15068 tRNA mo(5)U34 methylt 98.7 1.3E-07 2.8E-12 68.4 9.4 87 8-102 190-276 (322)
21 PLN02244 tocopherol O-methyltr 98.6 3.2E-07 7E-12 66.8 9.5 91 8-101 187-279 (340)
22 PLN02336 phosphoethanolamine N 98.6 3.4E-07 7.4E-12 69.1 9.6 83 8-101 333-415 (475)
23 smart00828 PKS_MT Methyltransf 98.6 3.6E-07 7.7E-12 62.5 8.5 79 8-102 68-146 (224)
24 PLN02396 hexaprenyldihydroxybe 98.5 3.8E-07 8.1E-12 66.1 6.5 92 8-101 199-290 (322)
25 PRK14103 trans-aconitate 2-met 98.5 1.1E-06 2.3E-11 61.5 7.9 89 7-97 89-181 (255)
26 PRK08317 hypothetical protein; 98.5 9.8E-07 2.1E-11 60.1 7.6 88 8-100 88-176 (241)
27 PLN02336 phosphoethanolamine N 98.4 9.1E-07 2E-11 66.8 7.4 75 8-96 104-178 (475)
28 PRK11036 putative S-adenosyl-L 98.4 1.1E-06 2.4E-11 61.4 5.9 94 8-103 113-210 (255)
29 PRK11207 tellurite resistance 98.3 4.6E-06 9.9E-11 56.3 8.4 73 8-98 96-168 (197)
30 KOG4300 Predicted methyltransf 98.3 3.8E-06 8.3E-11 57.3 7.4 91 8-104 146-236 (252)
31 KOG1540 Ubiquinone biosynthesi 98.3 4.4E-06 9.6E-11 58.5 7.3 89 4-97 172-278 (296)
32 TIGR00477 tehB tellurite resis 98.3 1.2E-05 2.6E-10 54.2 9.1 74 8-99 95-168 (195)
33 KOG2361 Predicted methyltransf 98.2 4.3E-06 9.2E-11 58.1 6.4 87 9-98 146-235 (264)
34 PRK05134 bifunctional 3-demeth 98.2 9.9E-06 2.1E-10 55.7 7.1 89 8-100 115-205 (233)
35 PRK04266 fibrillarin; Provisio 98.2 1.9E-05 4.1E-10 54.6 8.4 80 8-113 142-226 (226)
36 PF08241 Methyltransf_11: Meth 98.2 1.7E-06 3.6E-11 50.8 2.7 39 4-44 55-95 (95)
37 TIGR01983 UbiG ubiquinone bios 98.1 9.3E-06 2E-10 55.3 6.5 89 8-100 113-203 (224)
38 TIGR03438 probable methyltrans 98.1 3.2E-05 7E-10 55.5 9.3 36 9-44 140-175 (301)
39 PF04672 Methyltransf_19: S-ad 98.1 1.8E-06 3.8E-11 60.9 2.3 80 10-97 153-233 (267)
40 PF02353 CMAS: Mycolic acid cy 98.0 8.4E-06 1.8E-10 57.9 4.7 92 7-101 127-218 (273)
41 PRK12335 tellurite resistance 98.0 6E-05 1.3E-09 53.7 9.0 74 8-99 185-258 (287)
42 smart00138 MeTrc Methyltransfe 98.0 1.3E-05 2.9E-10 56.5 4.6 39 8-46 204-242 (264)
43 TIGR02021 BchM-ChlM magnesium 97.9 7.3E-05 1.6E-09 51.0 7.9 90 7-102 119-208 (219)
44 PF08242 Methyltransf_12: Meth 97.9 7.5E-06 1.6E-10 49.0 2.7 34 7-42 66-99 (99)
45 PRK07580 Mg-protoporphyrin IX 97.9 8.2E-05 1.8E-09 50.8 7.9 89 8-103 128-217 (230)
46 PF08003 Methyltransf_9: Prote 97.9 0.0001 2.2E-09 53.0 8.5 87 8-102 183-269 (315)
47 PRK11705 cyclopropane fatty ac 97.9 9.1E-05 2E-09 54.9 8.4 86 8-102 229-314 (383)
48 PLN02585 magnesium protoporphy 97.9 7.1E-05 1.5E-09 54.2 7.4 89 8-102 213-301 (315)
49 PF11968 DUF3321: Putative met 97.9 0.00034 7.4E-09 48.0 9.9 79 1-101 92-182 (219)
50 PRK06202 hypothetical protein; 97.8 4.3E-05 9.4E-10 52.6 5.4 89 8-101 130-223 (232)
51 PTZ00146 fibrillarin; Provisio 97.8 0.00065 1.4E-08 48.7 11.4 83 7-113 202-287 (293)
52 PRK10611 chemotaxis methyltran 97.8 4.2E-05 9.2E-10 54.7 4.3 38 8-45 224-261 (287)
53 PF12847 Methyltransf_18: Meth 97.7 6.6E-05 1.4E-09 45.6 4.5 41 6-46 69-111 (112)
54 TIGR02072 BioC biotin biosynth 97.7 0.00013 2.7E-09 49.8 6.0 77 8-99 99-175 (240)
55 PRK06922 hypothetical protein; 97.7 7.2E-05 1.6E-09 58.7 4.8 45 8-52 488-543 (677)
56 TIGR00537 hemK_rel_arch HemK-r 97.7 0.0013 2.8E-08 43.5 10.1 77 7-112 82-177 (179)
57 PF01739 CheR: CheR methyltran 97.6 5.8E-05 1.3E-09 51.2 2.9 38 8-45 137-174 (196)
58 COG2230 Cfa Cyclopropane fatty 97.6 0.00027 5.8E-09 50.4 6.3 89 8-103 138-226 (283)
59 PF13847 Methyltransf_31: Meth 97.6 2E-05 4.3E-10 50.8 0.5 80 7-92 73-152 (152)
60 PF12147 Methyltransf_20: Puta 97.6 0.0011 2.3E-08 47.6 9.0 100 6-112 208-311 (311)
61 PRK05785 hypothetical protein; 97.5 0.0008 1.7E-08 46.4 8.1 100 8-112 111-224 (226)
62 PLN03075 nicotianamine synthas 97.5 0.00016 3.5E-09 51.9 4.3 37 7-44 195-231 (296)
63 PRK01683 trans-aconitate 2-met 97.5 0.0011 2.3E-08 46.3 8.3 37 7-45 93-129 (258)
64 PF05401 NodS: Nodulation prot 97.5 0.00017 3.7E-09 48.9 3.7 73 8-101 107-180 (201)
65 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00041 8.8E-09 48.9 5.7 82 5-100 155-239 (256)
66 PRK10258 biotin biosynthesis p 97.4 0.0008 1.7E-08 46.8 7.1 79 8-95 104-182 (251)
67 PF13649 Methyltransf_25: Meth 97.4 0.00016 3.5E-09 43.4 2.5 33 8-40 68-101 (101)
68 COG2227 UbiG 2-polyprenyl-3-me 97.3 0.00026 5.6E-09 49.3 3.6 89 7-101 124-216 (243)
69 PF03848 TehB: Tellurite resis 97.3 0.00065 1.4E-08 46.0 4.8 73 8-98 95-167 (192)
70 KOG1270 Methyltransferases [Co 97.2 0.00043 9.4E-09 48.8 3.4 88 7-101 158-250 (282)
71 PF05148 Methyltransf_8: Hypot 97.1 0.004 8.7E-08 42.7 7.6 80 4-113 117-198 (219)
72 COG1352 CheR Methylase of chem 97.1 0.0014 3.1E-08 46.5 5.1 38 8-45 203-240 (268)
73 TIGR03840 TMPT_Se_Te thiopurin 97.0 0.0033 7.2E-08 43.1 6.3 43 7-49 113-155 (213)
74 COG4798 Predicted methyltransf 97.0 0.0037 8E-08 42.6 6.3 79 8-101 123-206 (238)
75 KOG3045 Predicted RNA methylas 96.9 0.0093 2E-07 42.4 8.1 77 8-114 229-305 (325)
76 TIGR03587 Pse_Me-ase pseudamin 96.9 0.0035 7.6E-08 42.6 6.0 47 3-51 99-147 (204)
77 PF05219 DREV: DREV methyltran 96.7 0.0081 1.8E-07 42.5 6.6 82 8-101 152-241 (265)
78 PRK13255 thiopurine S-methyltr 96.7 0.0062 1.4E-07 41.9 5.9 74 7-100 116-190 (218)
79 cd02440 AdoMet_MTases S-adenos 96.7 0.006 1.3E-07 35.1 5.0 38 7-45 66-103 (107)
80 TIGR02081 metW methionine bios 96.6 0.01 2.2E-07 39.8 6.5 85 8-101 76-168 (194)
81 PRK00517 prmA ribosomal protei 96.6 0.038 8.1E-07 38.6 9.4 67 8-108 180-246 (250)
82 PRK14968 putative methyltransf 96.5 0.06 1.3E-06 35.3 9.5 48 25-101 127-174 (188)
83 PRK08287 cobalt-precorrin-6Y C 96.3 0.027 5.8E-07 37.4 6.8 57 8-98 98-154 (187)
84 TIGR03534 RF_mod_PrmC protein- 96.2 0.03 6.4E-07 38.6 7.0 47 26-102 197-243 (251)
85 COG4627 Uncharacterized protei 96.2 0.0016 3.5E-08 42.8 0.4 38 8-45 48-85 (185)
86 PRK13256 thiopurine S-methyltr 96.2 0.025 5.5E-07 39.2 6.4 44 7-50 124-167 (226)
87 PRK09489 rsmC 16S ribosomal RN 96.0 0.022 4.8E-07 41.8 5.6 40 8-47 262-304 (342)
88 KOG1975 mRNA cap methyltransfe 95.8 0.018 3.9E-07 42.1 4.3 39 6-44 195-235 (389)
89 KOG2899 Predicted methyltransf 95.7 0.1 2.2E-06 36.8 7.8 85 5-97 164-254 (288)
90 PRK15001 SAM-dependent 23S rib 95.6 0.037 8.1E-07 41.2 5.6 39 8-46 299-340 (378)
91 PRK09328 N5-glutamine S-adenos 95.4 0.22 4.9E-06 34.8 8.9 57 25-111 217-274 (275)
92 TIGR03439 methyl_EasF probable 95.3 0.039 8.5E-07 40.2 4.9 40 9-48 159-200 (319)
93 TIGR02469 CbiT precorrin-6Y C5 95.3 0.025 5.4E-07 34.5 3.3 33 8-45 89-121 (124)
94 PF03291 Pox_MCEL: mRNA cappin 95.1 0.028 6E-07 41.2 3.4 39 8-46 146-186 (331)
95 PF05724 TPMT: Thiopurine S-me 94.9 0.087 1.9E-06 36.3 5.3 72 8-99 117-189 (218)
96 PF06859 Bin3: Bicoid-interact 94.7 0.01 2.2E-07 36.7 0.3 87 8-102 2-94 (110)
97 PF07942 N2227: N2227-like pro 94.5 0.34 7.5E-06 34.6 7.6 77 8-100 166-242 (270)
98 TIGR00027 mthyl_TIGR00027 meth 94.5 0.35 7.5E-06 34.2 7.7 84 9-98 160-248 (260)
99 COG4106 Tam Trans-aconitate me 94.4 0.2 4.4E-06 34.9 6.1 100 7-112 92-203 (257)
100 PF05175 MTS: Methyltransferas 94.1 0.1 2.2E-06 34.2 4.2 45 2-46 91-140 (170)
101 PRK11188 rrmJ 23S rRNA methylt 93.8 0.2 4.3E-06 34.2 5.3 40 8-47 118-166 (209)
102 TIGR00138 gidB 16S rRNA methyl 93.7 0.085 1.8E-06 35.2 3.2 33 7-45 109-141 (181)
103 PRK00107 gidB 16S rRNA methylt 93.3 0.17 3.8E-06 34.0 4.2 34 7-46 112-145 (187)
104 KOG1331 Predicted methyltransf 93.0 0.11 2.4E-06 37.3 2.9 39 8-46 104-143 (293)
105 PF09243 Rsm22: Mitochondrial 92.8 0.24 5.3E-06 35.2 4.5 47 4-52 99-145 (274)
106 PRK00121 trmB tRNA (guanine-N( 92.7 0.17 3.7E-06 34.2 3.6 39 8-46 112-156 (202)
107 PF11899 DUF3419: Protein of u 92.5 0.2 4.4E-06 37.4 4.0 41 8-48 296-336 (380)
108 COG3315 O-Methyltransferase in 91.7 1.1 2.3E-05 32.5 6.7 89 9-99 172-263 (297)
109 PRK00377 cbiT cobalt-precorrin 91.5 0.39 8.6E-06 32.2 4.2 33 7-44 111-143 (198)
110 COG5459 Predicted rRNA methyla 91.5 0.17 3.7E-06 37.7 2.5 47 4-50 179-229 (484)
111 PRK13944 protein-L-isoaspartat 90.8 0.31 6.8E-06 33.0 3.2 30 8-45 143-172 (205)
112 TIGR00438 rrmJ cell division p 90.3 0.37 8E-06 32.0 3.1 38 8-45 99-145 (188)
113 COG4123 Predicted O-methyltran 90.1 1.9 4.2E-05 30.4 6.7 59 25-113 149-213 (248)
114 TIGR00417 speE spermidine synt 90.1 0.56 1.2E-05 33.2 4.1 38 8-45 146-185 (270)
115 COG4976 Predicted methyltransf 90.1 2.3 5.1E-05 30.1 6.9 91 8-114 189-287 (287)
116 cd01842 SGNH_hydrolase_like_5 90.0 0.72 1.6E-05 31.0 4.3 41 9-50 52-102 (183)
117 COG4301 Uncharacterized conser 89.9 0.81 1.8E-05 32.6 4.6 41 9-49 156-197 (321)
118 PF03141 Methyltransf_29: Puta 89.6 0.33 7.2E-06 37.4 2.7 45 2-46 421-467 (506)
119 TIGR00406 prmA ribosomal prote 89.4 0.51 1.1E-05 33.7 3.5 35 8-47 226-260 (288)
120 PRK14967 putative methyltransf 89.3 1.2 2.6E-05 30.4 5.1 25 25-49 138-162 (223)
121 COG2242 CobL Precorrin-6B meth 89.1 1.1 2.4E-05 30.3 4.7 36 4-45 99-134 (187)
122 TIGR00563 rsmB ribosomal RNA s 88.8 1.1 2.4E-05 33.8 5.0 27 26-52 348-374 (426)
123 PRK13942 protein-L-isoaspartat 88.6 0.62 1.3E-05 31.7 3.3 30 8-45 146-175 (212)
124 PF13659 Methyltransf_26: Meth 88.6 0.57 1.2E-05 28.2 2.9 38 8-45 71-114 (117)
125 KOG2798 Putative trehalase [Ca 88.5 4.6 9.9E-05 29.8 7.7 79 8-101 260-338 (369)
126 PF07021 MetW: Methionine bios 88.3 5.9 0.00013 27.0 7.8 94 5-104 71-171 (193)
127 COG2813 RsmC 16S RNA G1207 met 88.3 1.4 3.1E-05 31.9 5.0 46 2-47 218-267 (300)
128 PF03059 NAS: Nicotianamine sy 88.2 0.77 1.7E-05 32.9 3.7 38 6-44 191-228 (276)
129 PRK00811 spermidine synthase; 87.5 1.4 3E-05 31.5 4.6 37 8-44 151-189 (283)
130 PRK00312 pcm protein-L-isoaspa 86.7 1.4 3.1E-05 29.7 4.2 31 8-46 145-175 (212)
131 COG2521 Predicted archaeal met 86.6 4.9 0.00011 28.5 6.7 55 25-101 224-278 (287)
132 PF10017 Methyltransf_33: Hist 86.4 2 4.2E-05 27.0 4.4 35 73-107 90-125 (127)
133 PRK11088 rrmA 23S rRNA methylt 86.4 0.82 1.8E-05 32.2 3.0 30 8-46 152-181 (272)
134 KOG3010 Methyltransferase [Gen 86.0 0.79 1.7E-05 32.4 2.6 38 8-48 101-139 (261)
135 PF07109 Mg-por_mtran_C: Magne 85.8 5.8 0.00013 24.0 6.1 78 16-106 4-88 (97)
136 PRK04457 spermidine synthase; 85.8 1.3 2.9E-05 31.2 3.8 37 8-45 137-176 (262)
137 COG0500 SmtA SAM-dependent met 85.5 2.4 5.1E-05 25.3 4.5 41 8-51 120-160 (257)
138 TIGR00006 S-adenosyl-methyltra 84.9 1.4 3E-05 32.1 3.5 29 24-52 218-246 (305)
139 TIGR00080 pimt protein-L-isoas 84.5 1.5 3.2E-05 29.8 3.4 30 8-45 147-176 (215)
140 COG0275 Predicted S-adenosylme 84.0 2 4.4E-05 31.3 4.0 29 24-52 222-250 (314)
141 COG2264 PrmA Ribosomal protein 83.8 14 0.00029 27.0 8.1 66 8-107 230-295 (300)
142 PRK07402 precorrin-6B methylas 83.4 1.8 3.9E-05 28.8 3.4 24 24-47 120-143 (196)
143 TIGR00091 tRNA (guanine-N(7)-) 83.2 1.6 3.4E-05 29.2 3.1 21 26-46 112-132 (194)
144 PF08123 DOT1: Histone methyla 83.2 2.2 4.7E-05 29.2 3.8 45 6-53 121-165 (205)
145 PRK00050 16S rRNA m(4)C1402 me 82.9 1.9 4.1E-05 31.3 3.5 29 24-52 214-242 (296)
146 PF03269 DUF268: Caenorhabditi 82.4 9.9 0.00021 25.4 6.4 25 26-50 91-115 (177)
147 TIGR01177 conserved hypothetic 82.4 3.5 7.6E-05 29.9 4.8 38 8-45 249-293 (329)
148 PLN02366 spermidine synthase 81.9 3.5 7.6E-05 30.0 4.6 38 8-45 166-205 (308)
149 PF06325 PrmA: Ribosomal prote 81.1 7.5 0.00016 28.1 6.1 70 8-113 226-295 (295)
150 COG3963 Phospholipid N-methylt 80.4 7.6 0.00016 26.2 5.4 43 6-48 116-158 (194)
151 KOG3987 Uncharacterized conser 80.4 2 4.4E-05 29.9 2.8 78 8-96 170-256 (288)
152 PHA03411 putative methyltransf 79.6 11 0.00024 27.1 6.4 65 8-95 127-209 (279)
153 KOG1269 SAM-dependent methyltr 79.4 2.2 4.8E-05 31.8 2.9 43 8-52 179-221 (364)
154 PF03141 Methyltransf_29: Puta 79.1 0.74 1.6E-05 35.6 0.4 44 4-48 176-221 (506)
155 PRK01581 speE spermidine synth 79.0 4.6 9.9E-05 30.3 4.5 38 8-45 227-267 (374)
156 PLN02781 Probable caffeoyl-CoA 78.8 6.6 0.00014 27.2 5.0 36 8-49 145-180 (234)
157 PF01795 Methyltransf_5: MraW 77.7 1.7 3.7E-05 31.7 1.9 29 23-51 218-246 (310)
158 KOG2539 Mitochondrial/chloropl 77.3 4.4 9.6E-05 31.3 4.0 43 8-50 275-319 (491)
159 PF06557 DUF1122: Protein of u 76.5 5.3 0.00012 26.5 3.8 60 25-101 65-124 (170)
160 TIGR02764 spore_ybaN_pdaB poly 75.4 7.7 0.00017 25.7 4.5 58 17-98 130-187 (191)
161 PRK14901 16S rRNA methyltransf 73.7 4.1 8.9E-05 30.9 3.1 26 26-51 364-389 (434)
162 PF01269 Fibrillarin: Fibrilla 73.3 15 0.00034 25.6 5.6 70 22-113 154-228 (229)
163 PF10294 Methyltransf_16: Puta 73.2 7.3 0.00016 25.6 3.9 40 8-49 120-159 (173)
164 PRK14121 tRNA (guanine-N(7)-)- 73.0 8.2 0.00018 29.1 4.5 41 4-45 187-234 (390)
165 PRK03612 spermidine synthase; 72.6 7.5 0.00016 30.3 4.4 38 8-45 374-414 (521)
166 COG2518 Pcm Protein-L-isoaspar 71.7 9.5 0.00021 26.3 4.2 32 8-47 139-170 (209)
167 PF05430 Methyltransf_30: S-ad 71.2 9.4 0.0002 24.0 3.9 32 82-113 93-124 (124)
168 PRK01544 bifunctional N5-gluta 71.1 46 0.00099 26.0 8.3 20 25-44 248-267 (506)
169 PRK10901 16S rRNA methyltransf 70.6 7 0.00015 29.6 3.8 26 26-51 352-377 (427)
170 COG4353 Uncharacterized conser 70.5 16 0.00035 24.3 4.9 60 25-101 72-131 (192)
171 PRK14966 unknown domain/N5-glu 69.5 49 0.0011 25.4 8.5 57 26-112 361-418 (423)
172 TIGR03533 L3_gln_methyl protei 68.9 7.2 0.00016 27.8 3.4 20 25-44 230-249 (284)
173 PRK11805 N5-glutamine S-adenos 68.5 7.4 0.00016 28.2 3.4 20 25-44 242-261 (307)
174 COG2519 GCD14 tRNA(1-methylade 68.5 7.8 0.00017 27.5 3.4 32 17-50 168-199 (256)
175 PRK15001 SAM-dependent 23S rib 68.4 21 0.00045 26.8 5.8 45 3-50 101-146 (378)
176 TIGR00446 nop2p NOL1/NOP2/sun 68.0 7.5 0.00016 27.4 3.3 25 26-50 179-203 (264)
177 PRK14904 16S rRNA methyltransf 68.0 6.4 0.00014 29.9 3.1 26 26-51 357-382 (445)
178 TIGR03439 methyl_EasF probable 67.5 7.1 0.00015 28.6 3.1 36 72-107 281-317 (319)
179 PF13578 Methyltransf_24: Meth 67.2 4.7 0.0001 23.9 1.9 35 9-46 71-105 (106)
180 PF09822 ABC_transp_aux: ABC-t 66.9 12 0.00026 26.3 4.2 39 3-45 192-231 (271)
181 COG0503 Apt Adenine/guanine ph 66.8 21 0.00046 23.8 5.1 43 32-100 109-151 (179)
182 PF08845 SymE_toxin: Toxin Sym 66.6 9 0.00019 20.7 2.7 11 85-95 30-40 (57)
183 PRK11524 putative methyltransf 66.1 8.4 0.00018 27.4 3.2 20 26-45 60-79 (284)
184 PF07927 YcfA: YcfA-like prote 65.9 7.4 0.00016 20.4 2.3 17 82-98 2-18 (56)
185 PF01555 N6_N4_Mtase: DNA meth 65.4 4.9 0.00011 26.7 1.9 21 25-45 35-55 (231)
186 PRK09489 rsmC 16S ribosomal RN 65.2 23 0.0005 26.1 5.4 40 8-50 77-116 (342)
187 KOG1661 Protein-L-isoaspartate 63.9 7.4 0.00016 27.1 2.5 29 8-44 163-191 (237)
188 PF06968 BATS: Biotin and Thia 63.5 14 0.00031 21.7 3.4 76 18-94 17-92 (93)
189 PRK11933 yebU rRNA (cytosine-C 63.3 7.5 0.00016 30.0 2.7 23 26-48 222-244 (470)
190 PF08002 DUF1697: Protein of u 63.2 14 0.00031 23.5 3.6 36 73-109 12-48 (137)
191 PRK14903 16S rRNA methyltransf 62.6 9.8 0.00021 28.9 3.2 26 26-51 346-371 (431)
192 PRK13699 putative methylase; P 62.4 11 0.00023 26.1 3.1 20 25-44 51-70 (227)
193 PRK14902 16S rRNA methyltransf 62.4 12 0.00026 28.4 3.6 24 26-49 359-382 (444)
194 PLN02476 O-methyltransferase 61.7 58 0.0013 23.5 7.8 81 8-108 195-275 (278)
195 PF03574 Peptidase_S48: Peptid 60.9 8.1 0.00018 24.5 2.1 27 16-42 13-39 (149)
196 TIGR00536 hemK_fam HemK family 60.9 13 0.00028 26.4 3.4 21 24-44 222-242 (284)
197 TIGR03704 PrmC_rel_meth putati 59.6 16 0.00035 25.6 3.7 19 26-44 196-214 (251)
198 COG2813 RsmC 16S RNA G1207 met 59.5 33 0.00071 25.1 5.2 37 8-47 38-74 (300)
199 COG1889 NOP1 Fibrillarin-like 58.4 61 0.0013 22.6 8.9 72 22-113 156-230 (231)
200 KOG2198 tRNA cytosine-5-methyl 58.1 10 0.00022 28.4 2.5 27 26-52 276-302 (375)
201 PF13592 HTH_33: Winged helix- 57.9 9.6 0.00021 20.5 1.8 27 75-101 18-44 (60)
202 PF11312 DUF3115: Protein of u 57.4 17 0.00037 26.7 3.5 26 22-47 218-243 (315)
203 cd01093 CRIB_PAK_like PAK (p21 57.4 6.4 0.00014 20.2 1.0 19 79-97 26-44 (46)
204 PRK08558 adenine phosphoribosy 56.5 36 0.00079 23.8 5.0 66 34-100 171-236 (238)
205 PRK13605 endoribonuclease SymE 56.4 16 0.00035 22.6 2.8 11 85-95 44-54 (113)
206 PF01206 TusA: Sulfurtransfera 56.3 30 0.00066 18.8 3.8 28 81-108 40-67 (70)
207 COG4122 Predicted O-methyltran 55.7 20 0.00043 24.9 3.5 39 8-52 133-171 (219)
208 PRK13943 protein-L-isoaspartat 55.4 13 0.00028 27.3 2.6 31 8-46 150-180 (322)
209 PF01870 Hjc: Archaeal hollida 55.2 11 0.00024 22.2 1.9 19 81-99 3-21 (88)
210 KOG2940 Predicted methyltransf 54.7 4.2 9.1E-05 28.9 0.1 82 8-98 138-225 (325)
211 PRK00536 speE spermidine synth 54.3 15 0.00032 26.2 2.8 31 8-45 140-170 (262)
212 PF06283 ThuA: Trehalose utili 53.5 25 0.00055 23.8 3.8 38 5-46 50-88 (217)
213 PF08468 MTS_N: Methyltransfer 52.9 26 0.00057 22.8 3.6 39 8-49 70-108 (155)
214 COG5379 BtaA S-adenosylmethion 52.9 34 0.00074 25.3 4.4 40 6-45 326-365 (414)
215 COG0144 Sun tRNA and rRNA cyto 52.7 15 0.00032 27.2 2.7 27 26-52 268-294 (355)
216 PF06962 rRNA_methylase: Putat 52.7 12 0.00026 24.2 1.9 25 24-48 70-94 (140)
217 PF14258 DUF4350: Domain of un 52.6 30 0.00066 18.8 3.4 11 35-45 59-69 (70)
218 PRK10556 hypothetical protein; 51.9 21 0.00045 21.7 2.7 22 80-101 4-25 (111)
219 PF02636 Methyltransf_28: Puta 50.8 27 0.00058 24.3 3.6 27 24-50 172-198 (252)
220 KOG2918 Carboxymethyl transfer 50.4 43 0.00093 24.8 4.6 85 10-101 191-278 (335)
221 PF14740 DUF4471: Domain of un 49.4 17 0.00036 26.4 2.4 62 9-97 224-286 (289)
222 PF05772 NinB: NinB protein; 49.1 23 0.00049 22.5 2.7 33 73-106 55-93 (127)
223 PRK13587 1-(5-phosphoribosyl)- 48.8 50 0.0011 22.9 4.7 24 73-97 196-219 (234)
224 COG4822 CbiK Cobalamin biosynt 47.9 28 0.00062 24.4 3.2 25 79-103 216-240 (265)
225 PF07090 DUF1355: Protein of u 47.6 19 0.00042 24.1 2.4 40 4-46 64-108 (177)
226 PF01135 PCMT: Protein-L-isoas 46.8 15 0.00032 25.2 1.8 31 8-46 142-172 (209)
227 PRK06852 aldolase; Validated 46.6 20 0.00044 26.2 2.5 28 18-45 9-36 (304)
228 PF03698 UPF0180: Uncharacteri 46.5 24 0.00051 20.6 2.3 25 77-101 6-30 (80)
229 PF02390 Methyltransf_4: Putat 45.7 13 0.00029 25.0 1.4 20 26-45 113-132 (195)
230 COG4301 Uncharacterized conser 45.6 47 0.001 24.0 4.1 39 73-111 281-320 (321)
231 cd04911 ACT_AKiii-YclM-BS_1 AC 45.5 40 0.00087 19.3 3.2 22 20-41 51-72 (76)
232 PF13319 DUF4090: Protein of u 45.4 27 0.00058 20.2 2.4 27 73-99 53-79 (84)
233 PF05763 DUF835: Protein of un 45.0 38 0.00083 21.6 3.4 40 9-48 42-84 (136)
234 PRK01033 imidazole glycerol ph 45.0 58 0.0013 22.9 4.6 25 73-97 200-224 (258)
235 PF09400 DUF2002: Protein of u 44.6 28 0.0006 21.4 2.5 22 80-101 4-25 (111)
236 TIGR00478 tly hemolysin TlyA f 44.2 1.1E+02 0.0023 21.3 5.9 70 7-102 143-219 (228)
237 PF14814 UB2H: Bifunctional tr 43.4 21 0.00045 20.7 1.8 29 75-103 3-31 (85)
238 COG0220 Predicted S-adenosylme 43.0 34 0.00073 23.8 3.1 68 26-99 144-221 (227)
239 PF15603 Imm45: Immunity prote 42.9 68 0.0015 18.7 4.5 39 8-46 35-82 (82)
240 cd00291 SirA_YedF_YeeD SirA, Y 42.9 55 0.0012 17.5 4.0 26 81-106 39-64 (69)
241 COG2240 PdxK Pyridoxal/pyridox 42.5 51 0.0011 23.9 3.9 91 6-101 72-181 (281)
242 cd03423 SirA SirA (also known 42.0 60 0.0013 17.8 4.0 28 81-108 39-66 (69)
243 PF09587 PGA_cap: Bacterial ca 41.9 98 0.0021 21.4 5.3 44 8-51 6-50 (250)
244 PRK09219 xanthine phosphoribos 41.6 59 0.0013 21.9 4.0 67 34-101 112-178 (189)
245 PRK10858 nitrogen regulatory p 41.1 62 0.0013 19.9 3.8 27 20-46 65-95 (112)
246 PF07685 GATase_3: CobB/CobQ-l 40.5 22 0.00047 23.0 1.7 38 6-43 6-46 (158)
247 cd02931 ER_like_FMN Enoate red 40.4 1.6E+02 0.0034 22.1 6.5 29 20-48 76-104 (382)
248 PRK03094 hypothetical protein; 40.1 38 0.00083 19.7 2.5 24 77-100 6-29 (80)
249 PF00919 UPF0004: Uncharacteri 39.9 82 0.0018 18.7 4.8 46 6-53 35-83 (98)
250 cd03413 CbiK_C Anaerobic cobal 39.5 37 0.00081 20.4 2.6 18 81-98 81-98 (103)
251 smart00874 B5 tRNA synthetase 39.4 43 0.00094 18.2 2.7 21 76-96 16-36 (71)
252 PRK09662 GspL-like protein; Pr 39.1 28 0.0006 25.2 2.2 20 81-100 7-26 (286)
253 cd03422 YedF YedF is a bacteri 38.9 69 0.0015 17.6 3.9 26 81-106 39-64 (69)
254 PF10006 DUF2249: Uncharacteri 38.7 68 0.0015 17.5 3.5 26 21-46 8-33 (69)
255 PRK13510 sulfur transfer compl 38.7 29 0.00064 20.6 2.0 31 17-47 2-32 (95)
256 COG0421 SpeE Spermidine syntha 38.3 43 0.00092 24.2 3.1 20 26-45 170-189 (282)
257 PLN02823 spermine synthase 38.2 37 0.00081 25.0 2.8 19 26-44 199-218 (336)
258 PF03484 B5: tRNA synthetase B 38.0 41 0.00089 18.6 2.4 23 76-98 16-38 (70)
259 PRK09213 pur operon repressor; 37.7 1.2E+02 0.0026 21.8 5.2 21 34-54 191-211 (271)
260 PRK02220 4-oxalocrotonate taut 37.4 65 0.0014 16.8 3.5 35 16-50 8-48 (61)
261 TIGR03709 PPK2_rel_1 polyphosp 37.4 48 0.001 23.7 3.2 68 25-99 99-166 (264)
262 PF01316 Arg_repressor: Argini 37.3 36 0.00078 19.2 2.1 21 76-96 17-37 (70)
263 PRK04280 arginine repressor; P 37.1 36 0.00079 22.0 2.4 23 75-97 15-37 (148)
264 PF00107 ADH_zinc_N: Zinc-bind 37.0 23 0.00049 21.4 1.4 24 26-49 69-92 (130)
265 cd03238 ABC_UvrA The excision 36.8 1.2E+02 0.0025 20.1 4.8 7 40-46 108-114 (176)
266 COG4004 Uncharacterized protei 36.8 96 0.0021 18.6 4.5 39 74-112 7-49 (96)
267 TIGR02873 spore_ylxY probable 36.7 34 0.00073 24.4 2.4 56 17-99 209-264 (268)
268 PF09382 RQC: RQC domain; Int 36.7 18 0.00038 21.5 0.8 61 24-90 5-65 (106)
269 PF01189 Nol1_Nop2_Fmu: NOL1/N 36.5 16 0.00035 26.1 0.7 25 26-50 195-223 (283)
270 PF01564 Spermine_synth: Sperm 36.4 22 0.00048 24.9 1.4 40 7-46 150-191 (246)
271 CHL00123 rps6 ribosomal protei 36.2 95 0.0021 18.4 5.0 42 4-47 4-46 (97)
272 PF10354 DUF2431: Domain of un 35.9 53 0.0012 21.6 3.1 20 26-45 105-124 (166)
273 COG1438 ArgR Arginine represso 35.4 38 0.00082 22.2 2.2 22 75-96 17-38 (150)
274 PRK11018 hypothetical protein; 35.3 87 0.0019 17.7 4.0 26 81-106 48-73 (78)
275 cd03142 GATase1_ThuA Type 1 gl 35.0 74 0.0016 22.0 3.7 39 5-47 56-96 (215)
276 TIGR03707 PPK2_P_aer polyphosp 34.8 43 0.00093 23.4 2.6 69 24-99 73-141 (230)
277 COG1245 Predicted ATPase, RNas 34.8 1.1E+02 0.0024 24.2 4.9 41 7-47 231-271 (591)
278 PRK05298 excinuclease ABC subu 34.5 1.6E+02 0.0035 23.8 6.0 33 74-106 162-194 (652)
279 TIGR01743 purR_Bsub pur operon 34.4 1.2E+02 0.0026 21.7 4.8 20 34-53 189-208 (268)
280 KOG3924 Putative protein methy 34.2 91 0.002 23.9 4.3 44 6-52 271-314 (419)
281 PRK06132 hypothetical protein; 34.2 44 0.00096 25.0 2.7 24 26-49 321-344 (359)
282 PRK10665 nitrogen regulatory p 34.1 92 0.002 19.1 3.7 27 20-46 65-95 (112)
283 cd04723 HisA_HisF Phosphoribos 34.1 1.4E+02 0.003 20.6 5.0 69 25-97 148-216 (233)
284 cd03420 SirA_RHOD_Pry_redox Si 34.1 84 0.0018 17.2 3.9 27 81-107 39-65 (69)
285 COG2326 Uncharacterized conser 33.7 63 0.0014 23.2 3.2 65 25-99 117-184 (270)
286 TIGR01744 XPRTase xanthine pho 33.7 1E+02 0.0022 20.8 4.2 67 34-101 112-178 (191)
287 COG3897 Predicted methyltransf 33.7 96 0.0021 21.5 4.0 42 6-50 141-183 (218)
288 PF07862 Nif11: Nitrogen fixat 33.2 55 0.0012 16.6 2.3 18 79-96 27-44 (49)
289 PF01887 SAM_adeno_trans: S-ad 33.1 1.6E+02 0.0034 21.0 5.2 47 6-52 27-74 (258)
290 PF10726 DUF2518: Protein of f 33.1 58 0.0013 21.2 2.7 33 9-42 81-113 (145)
291 PF00543 P-II: Nitrogen regula 32.9 47 0.001 19.7 2.3 27 20-46 62-92 (102)
292 PF01436 NHL: NHL repeat; Int 32.8 26 0.00057 15.6 0.9 12 36-47 9-20 (28)
293 KOG2352 Predicted spermine/spe 32.8 90 0.002 24.4 4.2 46 8-53 115-170 (482)
294 PLN02589 caffeoyl-CoA O-methyl 32.7 74 0.0016 22.4 3.5 37 8-50 157-193 (247)
295 PF12646 DUF3783: Domain of un 32.5 59 0.0013 17.4 2.4 20 16-35 5-24 (58)
296 COG1724 Predicted RNA binding 32.4 64 0.0014 18.0 2.5 21 79-99 7-27 (66)
297 COG4421 Capsular polysaccharid 32.3 47 0.001 24.8 2.5 22 80-101 242-263 (368)
298 PHA00457 inhibitor of host bac 32.2 62 0.0013 17.7 2.4 14 88-101 47-60 (63)
299 PRK13245 hetR heterocyst diffe 32.1 21 0.00047 25.1 0.7 30 13-42 63-92 (299)
300 PF05711 TylF: Macrocin-O-meth 32.1 31 0.00066 24.4 1.5 23 25-47 191-213 (248)
301 PF03492 Methyltransf_7: SAM d 31.9 70 0.0015 23.5 3.4 19 78-96 230-249 (334)
302 COG1064 AdhP Zn-dependent alco 31.8 1.1E+02 0.0024 22.8 4.4 23 27-49 240-262 (339)
303 cd01414 SAICAR_synt_Sc non-met 31.8 1.1E+02 0.0024 22.1 4.3 49 39-96 202-251 (279)
304 COG0541 Ffh Signal recognition 31.5 1.2E+02 0.0027 23.5 4.7 45 8-52 183-227 (451)
305 PTZ00311 phosphoenolpyruvate c 31.5 1.5E+02 0.0033 23.7 5.2 46 9-54 97-142 (561)
306 COG3019 Predicted metal-bindin 31.4 59 0.0013 21.1 2.6 19 82-100 40-58 (149)
307 COG0107 HisF Imidazoleglycerol 30.9 1.7E+02 0.0038 20.8 5.0 57 41-98 46-102 (256)
308 TIGR00631 uvrb excinuclease AB 30.7 1.2E+02 0.0026 24.6 4.7 34 73-106 158-191 (655)
309 COG1743 Adenine-specific DNA m 30.6 1.7E+02 0.0037 24.6 5.5 23 25-47 567-589 (875)
310 TIGR03675 arCOG00543 arCOG0054 30.4 1.4E+02 0.0029 24.2 5.0 44 5-48 362-411 (630)
311 PF11305 DUF3107: Protein of u 30.4 62 0.0013 18.5 2.3 25 22-46 19-44 (74)
312 cd08283 FDH_like_1 Glutathione 30.3 65 0.0014 23.7 3.1 22 26-47 286-307 (386)
313 KOG0902 Phosphatidylinositol 4 30.1 67 0.0015 28.8 3.3 32 83-114 1568-1603(1803)
314 COG3288 PntA NAD/NADP transhyd 29.9 78 0.0017 23.6 3.3 39 5-45 242-280 (356)
315 KOG1500 Protein arginine N-met 29.8 76 0.0017 24.1 3.2 40 4-43 239-279 (517)
316 COG1060 ThiH Thiamine biosynth 29.6 64 0.0014 24.2 2.9 27 76-102 334-360 (370)
317 cd08258 Zn_ADH4 Alcohol dehydr 29.4 1.8E+02 0.004 20.4 5.2 23 27-49 245-267 (306)
318 COG1236 YSH1 Predicted exonucl 29.2 1.3E+02 0.0028 23.0 4.5 42 9-50 182-227 (427)
319 PF06897 DUF1269: Protein of u 29.1 94 0.002 18.8 3.1 21 27-47 43-63 (102)
320 KOG3201 Uncharacterized conser 28.8 1.1E+02 0.0024 20.7 3.6 36 8-45 104-139 (201)
321 TIGR01033 DNA-binding regulato 28.6 1.1E+02 0.0023 21.5 3.8 19 80-98 148-166 (238)
322 PF00786 PBD: P21-Rho-binding 28.6 45 0.00097 17.9 1.5 18 79-96 25-42 (59)
323 PF00017 SH2: SH2 domain; Int 28.1 72 0.0016 17.4 2.4 27 18-48 4-30 (77)
324 cd03421 SirA_like_N SirA_like_ 28.1 1.1E+02 0.0023 16.5 4.4 22 81-103 38-59 (67)
325 PF05185 PRMT5: PRMT5 arginine 28.0 33 0.00071 26.4 1.2 37 5-42 255-293 (448)
326 PRK00453 rpsF 30S ribosomal pr 28.0 1.4E+02 0.0031 17.9 4.4 39 7-47 3-42 (108)
327 PF10087 DUF2325: Uncharacteri 27.9 89 0.0019 18.2 2.9 26 73-98 4-29 (97)
328 COG1902 NemA NADH:flavin oxido 27.9 2.6E+02 0.0057 21.0 6.5 87 15-103 72-173 (363)
329 PF14117 DUF4287: Domain of un 27.8 65 0.0014 17.7 2.0 14 79-92 15-28 (61)
330 PF12419 DUF3670: SNF2 Helicas 27.7 1.7E+02 0.0036 18.6 4.7 71 20-92 11-97 (141)
331 PF10281 Ish1: Putative stress 27.6 79 0.0017 15.2 2.2 17 79-95 4-20 (38)
332 PF09827 CRISPR_Cas2: CRISPR a 27.3 1.2E+02 0.0026 16.8 4.2 29 20-48 39-68 (78)
333 TIGR00007 phosphoribosylformim 27.3 2E+02 0.0044 19.4 5.0 24 73-97 193-216 (230)
334 PF06200 tify: tify domain; I 27.0 70 0.0015 15.6 1.9 17 15-31 17-33 (36)
335 cd04882 ACT_Bt0572_2 C-termina 27.0 63 0.0014 16.7 2.0 15 81-95 50-64 (65)
336 PRK02289 4-oxalocrotonate taut 26.9 1.1E+02 0.0023 16.2 2.8 34 15-48 7-46 (60)
337 PRK05066 arginine repressor; P 26.8 49 0.0011 21.7 1.7 21 74-94 19-39 (156)
338 PF08671 SinI: Anti-repressor 26.7 50 0.0011 15.4 1.3 14 82-95 3-19 (30)
339 PF08245 Mur_ligase_M: Mur lig 26.6 1.5E+02 0.0034 19.1 4.1 37 9-45 73-114 (188)
340 cd03067 PDI_b_PDIR_N PDIb fami 26.2 1.7E+02 0.0036 18.1 3.9 27 23-49 34-60 (112)
341 PF03793 PASTA: PASTA domain; 26.2 1.1E+02 0.0024 16.0 3.2 20 79-98 9-28 (63)
342 COG0217 Uncharacterized conser 25.8 1.3E+02 0.0028 21.3 3.7 22 78-99 146-167 (241)
343 COG0347 GlnK Nitrogen regulato 25.8 1.4E+02 0.0031 18.5 3.5 27 20-46 65-95 (112)
344 PF11590 DNAPolymera_Pol: DNA 25.7 63 0.0014 16.2 1.6 15 83-97 2-16 (41)
345 PRK13961 phosphoribosylaminoim 25.7 1.6E+02 0.0036 21.4 4.3 45 38-94 215-263 (296)
346 PF12780 AAA_8: P-loop contain 25.6 1E+02 0.0022 21.9 3.3 71 24-99 15-92 (268)
347 PRK13810 orotate phosphoribosy 25.5 2.1E+02 0.0046 19.1 4.7 66 33-100 116-181 (187)
348 PF10672 Methyltrans_SAM: S-ad 25.5 43 0.00093 24.2 1.4 24 24-47 216-239 (286)
349 PRK00301 aat leucyl/phenylalan 25.2 2.5E+02 0.0054 19.8 5.2 66 8-92 149-214 (233)
350 cd04276 ZnMc_MMP_like_2 Zinc-d 25.1 95 0.0021 21.1 2.9 19 80-98 29-47 (197)
351 PF07647 SAM_2: SAM domain (St 25.1 86 0.0019 16.6 2.3 17 79-95 4-20 (66)
352 cd03143 A4_beta-galactosidase_ 25.1 1.2E+02 0.0027 19.0 3.4 34 6-44 52-85 (154)
353 PF08704 GCD14: tRNA methyltra 25.0 36 0.00078 24.0 0.9 35 8-49 114-149 (247)
354 PF08373 RAP: RAP domain; Int 24.8 80 0.0017 16.3 2.1 15 85-99 24-38 (58)
355 PF00403 HMA: Heavy-metal-asso 24.8 81 0.0018 16.4 2.1 16 79-94 47-62 (62)
356 COG1795 Formaldehyde-activatin 24.7 57 0.0012 21.5 1.7 29 9-37 107-135 (170)
357 cd04908 ACT_Bt0572_1 N-termina 24.6 1.2E+02 0.0026 16.1 2.8 16 80-95 49-64 (66)
358 KOG3451 Uncharacterized conser 24.4 79 0.0017 17.8 2.0 25 22-46 13-37 (71)
359 TIGR03521 GldG gliding-associa 24.3 1.4E+02 0.0031 23.6 4.1 35 7-45 234-268 (552)
360 PF02492 cobW: CobW/HypB/UreG, 24.3 78 0.0017 20.6 2.4 35 8-43 143-177 (178)
361 PF04816 DUF633: Family of unk 24.2 2.1E+02 0.0046 19.5 4.5 34 80-113 104-140 (205)
362 PF04298 Zn_peptidase_2: Putat 24.1 1.5E+02 0.0032 20.8 3.7 26 78-103 36-62 (222)
363 cd01919 PEPCK Phosphoenolpyruv 24.1 2.1E+02 0.0046 22.6 4.9 39 16-54 67-105 (515)
364 PRK15128 23S rRNA m(5)C1962 me 24.1 99 0.0021 23.4 3.1 22 25-46 318-339 (396)
365 KOG1271 Methyltransferases [Ge 24.0 70 0.0015 22.1 2.0 65 8-102 137-207 (227)
366 PF15072 DUF4539: Domain of un 24.0 72 0.0016 18.7 1.9 22 26-47 38-59 (86)
367 PF01709 Transcrip_reg: Transc 23.9 17 0.00038 25.3 -0.9 20 78-97 142-161 (234)
368 PRK14339 (dimethylallyl)adenos 23.8 2.2E+02 0.0047 21.6 4.9 44 8-51 28-72 (420)
369 PRK02083 imidazole glycerol ph 23.8 1.5E+02 0.0033 20.5 3.8 24 73-96 201-224 (253)
370 PF08351 DUF1726: Domain of un 23.6 1.5E+02 0.0032 17.5 3.2 36 8-48 12-47 (92)
371 PRK00110 hypothetical protein; 23.4 1.7E+02 0.0036 20.8 3.9 19 80-98 146-164 (245)
372 COG1092 Predicted SAM-dependen 23.2 1.3E+02 0.0029 22.8 3.6 25 24-48 314-338 (393)
373 TIGR03798 ocin_TIGR03798 bacte 23.1 97 0.0021 16.7 2.2 17 79-95 25-41 (64)
374 COG1041 Predicted DNA modifica 23.1 1.3E+02 0.0028 22.5 3.4 26 22-47 286-311 (347)
375 PF13399 LytR_C: LytR cell env 23.1 92 0.002 17.7 2.3 27 74-100 11-37 (90)
376 cd04909 ACT_PDH-BS C-terminal 22.8 85 0.0018 16.6 2.0 16 80-95 54-69 (69)
377 COG3053 CitC Citrate lyase syn 22.5 1.1E+02 0.0024 22.6 2.9 34 74-109 91-124 (352)
378 PRK11611 enhanced serine sensi 22.5 1.6E+02 0.0035 20.9 3.7 35 74-108 99-133 (246)
379 cd05167 PI4Kc_III_alpha Phosph 22.5 2E+02 0.0043 21.1 4.3 31 83-113 76-110 (311)
380 PF09286 Pro-kuma_activ: Pro-k 22.3 1.1E+02 0.0024 19.2 2.7 20 80-99 63-82 (143)
381 KOG0063 RNAse L inhibitor, ABC 22.2 2.2E+02 0.0049 22.5 4.6 41 8-48 232-272 (592)
382 PRK14755 transcriptional regul 22.2 43 0.00093 14.6 0.5 13 30-42 10-22 (26)
383 TIGR00423 radical SAM domain p 22.1 1.1E+02 0.0023 22.1 2.8 25 78-102 282-306 (309)
384 KOG0182 20S proteasome, regula 22.0 1.7E+02 0.0036 20.6 3.5 48 65-114 9-56 (246)
385 PF05134 T2SL: Type II secreti 22.0 1.2E+02 0.0026 20.8 3.0 22 80-101 113-134 (230)
386 KOG1663 O-methyltransferase [S 21.9 1.7E+02 0.0036 20.7 3.6 29 19-49 157-185 (237)
387 PF13709 DUF4159: Domain of un 21.9 1.5E+02 0.0033 20.2 3.4 25 19-47 66-90 (207)
388 PF02153 PDH: Prephenate dehyd 21.8 2.9E+02 0.0062 19.3 6.0 33 6-43 44-76 (258)
389 PF13137 DUF3983: Protein of u 21.8 44 0.00096 16.0 0.6 17 77-93 18-34 (34)
390 TIGR01202 bchC 2-desacetyl-2-h 21.7 1.1E+02 0.0023 21.7 2.8 21 27-47 212-232 (308)
391 COG2738 Predicted Zn-dependent 21.6 1.4E+02 0.003 20.7 3.1 29 76-104 37-66 (226)
392 PF05924 SAMP: SAMP Motif; In 21.6 87 0.0019 13.2 1.6 12 27-38 4-15 (20)
393 TIGR00150 HI0065_YjeE ATPase, 21.6 2.2E+02 0.0047 18.0 3.9 26 21-46 4-29 (133)
394 TIGR03708 poly_P_AMP_trns poly 21.6 1E+02 0.0023 24.2 2.8 69 24-99 82-150 (493)
395 PF01250 Ribosomal_S6: Ribosom 21.5 1.3E+02 0.0029 17.3 2.7 29 19-47 12-41 (92)
396 COG4273 Uncharacterized conser 21.4 1.1E+02 0.0023 19.6 2.4 23 18-40 109-131 (135)
397 PF11455 DUF3018: Protein of 21.4 1.2E+02 0.0027 16.9 2.4 18 82-99 6-23 (65)
398 TIGR00959 ffh signal recogniti 21.3 2.4E+02 0.0053 21.6 4.7 42 8-49 183-224 (428)
399 PF13580 SIS_2: SIS domain; PD 21.3 94 0.002 19.4 2.2 25 23-47 19-43 (138)
400 smart00463 SMR Small MutS-rela 21.2 1.2E+02 0.0026 16.9 2.5 23 17-39 6-28 (80)
401 PF11253 DUF3052: Protein of u 21.2 2.3E+02 0.0051 18.0 8.7 69 8-103 46-114 (127)
402 PRK12378 hypothetical protein; 21.1 84 0.0018 22.1 2.1 17 36-52 87-103 (235)
403 PRK09902 hypothetical protein; 21.1 42 0.0009 23.3 0.6 36 17-52 122-164 (216)
404 PRK11783 rlmL 23S rRNA m(2)G24 21.1 1.4E+02 0.0031 24.3 3.6 21 25-45 635-655 (702)
405 PRK00299 sulfur transfer prote 21.0 1.8E+02 0.0038 16.5 7.6 26 81-106 49-74 (81)
406 cd04731 HisF The cyclase subun 20.9 2.8E+02 0.0061 18.9 4.7 24 73-96 197-220 (243)
407 PF05046 Img2: Mitochondrial l 20.9 91 0.002 18.2 1.9 14 80-93 74-87 (87)
408 COG0566 SpoU rRNA methylases [ 20.9 1.7E+02 0.0037 20.7 3.7 22 80-101 171-192 (260)
409 PRK14702 insertion element IS2 20.7 98 0.0021 21.8 2.4 25 72-96 157-181 (262)
410 TIGR00268 conserved hypothetic 20.6 2.6E+02 0.0057 19.4 4.5 31 81-112 187-217 (252)
411 cd05175 PI3Kc_IA_alpha Phospho 20.6 2.1E+02 0.0046 21.6 4.1 31 83-113 121-155 (366)
412 cd03319 L-Ala-DL-Glu_epimerase 20.5 3.3E+02 0.0072 19.5 5.1 28 74-101 233-260 (316)
413 PF03434 DUF276: DUF276 ; Int 20.5 1.1E+02 0.0024 21.8 2.5 23 21-43 53-75 (291)
414 TIGR01919 hisA-trpF 1-(5-phosp 20.4 2.6E+02 0.0057 19.5 4.5 57 40-96 164-222 (243)
415 PF00072 Response_reg: Respons 20.4 1.8E+02 0.0039 16.4 4.4 34 8-45 44-77 (112)
416 PF01596 Methyltransf_3: O-met 20.1 63 0.0014 22.0 1.3 36 8-49 122-157 (205)
417 KOG0805 Carbon-nitrogen hydrol 20.1 3.5E+02 0.0076 19.6 5.5 41 13-54 25-66 (337)
418 cd04883 ACT_AcuB C-terminal AC 20.1 1.3E+02 0.0028 15.9 2.4 18 79-96 52-69 (72)
419 PF13344 Hydrolase_6: Haloacid 20.1 1E+02 0.0022 18.2 2.1 21 74-94 37-57 (101)
420 cd00173 SH2 Src homology 2 dom 20.0 1.6E+02 0.0034 16.6 2.8 24 19-47 6-29 (94)
421 PF02913 FAD-oxidase_C: FAD li 20.0 80 0.0017 21.1 1.8 20 23-42 224-243 (248)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.92 E-value=2.6e-25 Score=158.72 Aligned_cols=112 Identities=42% Similarity=0.760 Sum_probs=97.4
Q ss_pred CCCCCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCC-chhhhhhhhcchhccccccCceec
Q 033647 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDT-SLASKQVIQLDCFMLAYTIGGREM 79 (114)
Q Consensus 1 ~f~~~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~r 79 (114)
||+.+|.+|+||++||||||+|++|+++|+||+++|+|||.|+++|.+.++.... +.........|+.|++++.+|++|
T Consensus 230 mfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker 309 (342)
T KOG3178|consen 230 MFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER 309 (342)
T ss_pred ccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence 6867999999999999999999999999999999999999999999999863222 111223456888888777889999
Q ss_pred CHHHHHHHHHHcCCceeEEEEcCCceeEEEEEe
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLK 112 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~~ 112 (114)
+.+||+.++.++||....+...+..+++||++|
T Consensus 310 t~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 310 TLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999988899999875
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.89 E-value=1.6e-23 Score=145.05 Aligned_cols=88 Identities=32% Similarity=0.628 Sum_probs=75.9
Q ss_pred CCCCCCcceEEEeccccccCChHHHHHHHHHHHHhCCCC--cEEEEEeeecCCCCCCchhhhhhhhcchhccccccCcee
Q 033647 1 MFVSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPED--GKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGRE 78 (114)
Q Consensus 1 ~f~~~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pg--g~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 78 (114)
||+++|.+|+|++++|||+|+|++|.+||++++++|+|| |+|+|+|.+.++....+........+|+.|+. +.+|++
T Consensus 152 ~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~-~~~G~~ 230 (241)
T PF00891_consen 152 FFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV-LTGGKE 230 (241)
T ss_dssp TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH-HHSSS-
T ss_pred HHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH-hcCCCC
Confidence 679999999999999999999999999999999999999 99999999999887765432233579999995 566999
Q ss_pred cCHHHHHHHHH
Q 033647 79 MTEQDFKTLAK 89 (114)
Q Consensus 79 rt~~e~~~ll~ 89 (114)
||.+||.+||+
T Consensus 231 rt~~e~~~ll~ 241 (241)
T PF00891_consen 231 RTEEEWEALLK 241 (241)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHhC
Confidence 99999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.66 E-value=7.9e-16 Score=109.99 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=70.0
Q ss_pred CC-CCCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh-hcchhccccccCcee
Q 033647 1 MF-VSIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVI-QLDCFMLAYTIGGRE 78 (114)
Q Consensus 1 ~f-~~~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 78 (114)
|| +++|.+|+|++++++|+|+++++.++|++++++|+|||+++|+|.+.++... +....+.. .....++. .. ...
T Consensus 208 ~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~ 284 (306)
T TIGR02716 208 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF-SV-LGF 284 (306)
T ss_pred ccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc-cc-ccC
Confidence 45 4677789999999999999999999999999999999999999998876532 21111111 12222221 11 123
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 033647 79 MTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (114)
++.+||.+||++|||+.++++
T Consensus 285 ~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 285 KEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CCHHHHHHHHHHcCCCeeEec
Confidence 458999999999999988754
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.47 E-value=1.1e-13 Score=94.05 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=65.7
Q ss_pred CCCC-cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCH
Q 033647 3 VSIP-KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTE 81 (114)
Q Consensus 3 ~~~p-~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
.|.+ .+|+||..|++-|++|++.+++|++|+++|+|+|.|+|.|++..... ..+|- ..++..|+.
T Consensus 117 ~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~ 182 (218)
T PF05891_consen 117 TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSD 182 (218)
T ss_dssp ---TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEH
T ss_pred cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCH
Confidence 3443 37999999999999999999999999999999999999999987541 12442 467788999
Q ss_pred HHHHHHHHHcCCceeEEE
Q 033647 82 QDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~ 99 (114)
+.|++++++||+++++-.
T Consensus 183 ~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 183 EHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp HHHHHHHHHCT-EEEEEE
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 999999999999998754
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.26 E-value=2e-12 Score=89.48 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=72.5
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhc--------------c
Q 033647 5 IPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFM--------------L 70 (114)
Q Consensus 5 ~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~--------------~ 70 (114)
++.+|++++..++|++++++...+++++++.|+|||++++.|.+.++++..... ....+.... -
T Consensus 120 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~ 197 (239)
T TIGR00740 120 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL--LIDLHHQFKRANGYSELEISQKRT 197 (239)
T ss_pred CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH--HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455799999999999999889999999999999999999999877654332110 000000000 0
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEE
Q 033647 71 AYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFL 111 (114)
Q Consensus 71 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~ 111 (114)
.....-+..|.+++.+++++|||+.+++....+++..+.++
T Consensus 198 ~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 198 ALENVMRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHhccCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 00011235689999999999999987766555566655554
No 6
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.04 E-value=6.2e-11 Score=82.59 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=69.7
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh--h---hhhhhcchhccc-------c
Q 033647 5 IPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLA--S---KQVIQLDCFMLA-------Y 72 (114)
Q Consensus 5 ~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~--~---~~~~~~~~~~~~-------~ 72 (114)
.+.+|++++..++|++++++...++++++++|+|||.+++.|.+..++...... . ......+..... .
T Consensus 123 ~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~ 202 (247)
T PRK15451 123 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML 202 (247)
T ss_pred CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345799999999999998888999999999999999999999876655432110 0 000011111000 0
Q ss_pred ccCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFL 111 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~ 111 (114)
...-...|.++..+||++|||+.+++..-..++..+.|+
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~ 241 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVAL 241 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhhe
Confidence 000113488999999999999987665443444444443
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.03 E-value=3e-09 Score=74.86 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCH
Q 033647 4 SIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTE 81 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
++|. +|+|+...++||++.++..++|+++++.|+|||++++.|............ ....... ..-...+.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~--~~~~~~~------~~~~~~~~ 183 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEE--FKAYIKK------RKYTLIPI 183 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHH--HHHHHHh------cCCCCCCH
Confidence 3454 599999999989987778999999999999999999999876543221110 1111000 01123578
Q ss_pred HHHHHHHHHcCCceeEEEEcC
Q 033647 82 QDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~ 102 (114)
+++.++|++|||+.++...+.
T Consensus 184 ~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 184 QEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHHHHCCCCeeeEEeCc
Confidence 999999999999999888764
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.00 E-value=5.1e-09 Score=73.61 Aligned_cols=99 Identities=20% Similarity=0.148 Sum_probs=66.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhc--c-ccccC---------
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFM--L-AYTIG--------- 75 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~--------- 75 (114)
.|+|++..++|+++| ..++|+++++.|+|||++++.|...++.+..... ....+...+ . .....
T Consensus 146 fD~V~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~ 221 (261)
T PLN02233 146 FDAITMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKS 221 (261)
T ss_pred EeEEEEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHH
Confidence 599999999999987 4689999999999999999999876554211110 000010000 0 00000
Q ss_pred --ceecCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEE
Q 033647 76 --GREMTEQDFKTLAKAAGFQGFKVVCSAFN-TYIMEF 110 (114)
Q Consensus 76 --g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~~ie~ 110 (114)
..-.+.+|+.++++++||+.++.....+. .+++.+
T Consensus 222 s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 222 SINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 22458999999999999999988887644 445444
No 9
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.98 E-value=3e-09 Score=69.73 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=65.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhcc--c-cccC---------
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFML--A-YTIG--------- 75 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--------- 75 (114)
.|++++..++|+++| ..+.|+++++.|+|||+++|.|...++..-..... ......... . ....
T Consensus 45 fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~yl~~ 120 (160)
T PLN02232 45 FDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQ--GWMIDNVVVPVATVYDLAKEYEYLKY 120 (160)
T ss_pred eeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHH--HHHccchHhhhhHHhCChHHHHhHHH
Confidence 599999999999976 47999999999999999999998765432110000 000000000 0 0000
Q ss_pred --ceecCHHHHHHHHHHcCCceeEEEEcCC-ceeEEEE
Q 033647 76 --GREMTEQDFKTLAKAAGFQGFKVVCSAF-NTYIMEF 110 (114)
Q Consensus 76 --g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~ie~ 110 (114)
..-.+.+|+.++|+++||+.++...... ..++..+
T Consensus 121 si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 121 SINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred HHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 1234788999999999999988877754 3444444
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.91 E-value=6.6e-09 Score=67.00 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=60.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++.++||+++| ...+|+++.+.|+|||.+++.+...... . . ..+.. +..... .......++.++|.++
T Consensus 79 fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~-~--~~~~~-~~~~~~-~~~~~~~~~~~~~~~l 150 (161)
T PF13489_consen 79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDP-S-P--RSFLK-WRYDRP-YGGHVHFFSPDELRQL 150 (161)
T ss_dssp EEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH-H-H--HHHHH-CCGTCH-HTTTTEEBBHHHHHHH
T ss_pred hhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcch-h-h--hHHHh-cCCcCc-cCceeccCCHHHHHHH
Confidence 699999999999996 6899999999999999999988776431 1 0 00111 111111 0134577899999999
Q ss_pred HHHcCCceeE
Q 033647 88 AKAAGFQGFK 97 (114)
Q Consensus 88 l~~aGf~~~~ 97 (114)
++++||++++
T Consensus 151 l~~~G~~iv~ 160 (161)
T PF13489_consen 151 LEQAGFEIVE 160 (161)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 9999999875
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.91 E-value=5.7e-10 Score=77.33 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=38.7
Q ss_pred CCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcc-hhcc-c--cccC---
Q 033647 5 IPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLD-CFML-A--YTIG--- 75 (114)
Q Consensus 5 ~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~--- 75 (114)
+|+ .|++.++..+|+++|. .+.|+++++.|+|||+++|+|...++.+..... ....+. .... . ...+
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~--~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLRAL--YKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHH--HHH-------------------
T ss_pred CCCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhhce--eeeeeccccccccccccccccc
Confidence 444 4999999999999984 679999999999999999999988765311100 000000 0000 0 0111
Q ss_pred --------ceecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 033647 76 --------GREMTEQDFKTLAKAAGFQGFKVVCSA-FNTYIMEFLK 112 (114)
Q Consensus 76 --------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie~~~ 112 (114)
-+-.+.+++.++++++||+.++..+.. |-.+++.+.|
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 112267899999999999999887775 4455665544
No 12
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.88 E-value=3.1e-08 Score=67.83 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=69.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhcc----ccccC--------
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFML----AYTIG-------- 75 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------- 75 (114)
+|+|++.+++|++++ ...+|+++.+.|+|||++++++...+..... ......+...++ ....+
T Consensus 122 ~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 122 FDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred ccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 699999999999987 4688999999999999999999876543210 000000000000 00000
Q ss_pred ----ceecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 033647 76 ----GREMTEQDFKTLAKAAGFQGFKVVCSA-FNTYIMEFLK 112 (114)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie~~~ 112 (114)
...++.++|.++|++|||+.+++.... +...++.++|
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999998864 6678888876
No 13
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.88 E-value=1.8e-08 Score=68.32 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=68.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccc-----c--ccC-----
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLA-----Y--TIG----- 75 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~----- 75 (114)
+|++++...+|+.++ ...+++++.+.|+|||++++.+...+.... ... ....+...++. . ..+
T Consensus 107 ~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKK-FYKFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHH-HHHHHHHHhhhhhhhhhcCCchhhHHH
Confidence 699999999998876 568999999999999999999876543321 100 00000000000 0 000
Q ss_pred ----ceecCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEEe
Q 033647 76 ----GREMTEQDFKTLAKAAGFQGFKVVCSAFN-TYIMEFLK 112 (114)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~~ie~~~ 112 (114)
....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347889999999999999999988655 56777764
No 14
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=2.7e-08 Score=67.50 Aligned_cols=101 Identities=17% Similarity=0.045 Sum_probs=79.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+..|++|-.+-+.+..+++.+.+.|+|||.+++.-++..+..-.++. ...||...-........|+.+++.++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S---N~~FD~sLr~rdp~~GiRD~e~v~~l 179 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES---NAAFDASLRSRDPEWGIRDIEDVEAL 179 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH---HHHHHHHHhcCCCCcCccCHHHHHHH
Confidence 699999999999999999999999999999999999998887664322211 23355544433445778999999999
Q ss_pred HHHcCCceeEEEEcCCceeEEEEE
Q 033647 88 AKAAGFQGFKVVCSAFNTYIMEFL 111 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~~ie~~ 111 (114)
.+++||+..+++.++.+.-++.-+
T Consensus 180 A~~~GL~l~~~~~MPANN~~Lvfr 203 (204)
T PF06080_consen 180 AAAHGLELEEDIDMPANNLLLVFR 203 (204)
T ss_pred HHHCCCccCcccccCCCCeEEEEe
Confidence 999999999999998664444433
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.85 E-value=3.6e-08 Score=71.79 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=60.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++.+++|++++. .++|+++++.|+|||++++.+...++.... ....+..+ ...+.+|+.++
T Consensus 179 FDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~------r~~~~~~~-------~~~t~eEl~~l 243 (340)
T PLN02490 179 ADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLS------RFFADVWM-------LFPKEEEYIEW 243 (340)
T ss_pred eeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHH------HHhhhhhc-------cCCCHHHHHHH
Confidence 5999999999999986 478999999999999999987655432110 00111111 12578999999
Q ss_pred HHHcCCceeEEEEcCC
Q 033647 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
|+++||+.+++..+.+
T Consensus 244 L~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 244 FTKAGFKDVKLKRIGP 259 (340)
T ss_pred HHHCCCeEEEEEEcCh
Confidence 9999999999887654
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.82 E-value=3.2e-08 Score=67.91 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=68.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh-hcchh----------------cc
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVI-QLDCF----------------ML 70 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~-~~~~~----------------~~ 70 (114)
.|+|++...+|++++. .++|+++.+.|+|||++++.+...++.+ ....... .+... .+
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 5999999999998875 5899999999999999999886554332 1110000 00000 00
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 033647 71 AYTIGGREMTEQDFKTLAKAAGFQGFKVVCSA-FNTYIMEFLK 112 (114)
Q Consensus 71 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie~~~ 112 (114)
. .......+.+++.++|++|||+.+++.... |..+++.++|
T Consensus 190 ~-~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 Q-ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred H-HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0 001123478899999999999999998886 5677877765
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.79 E-value=6.2e-08 Score=68.20 Aligned_cols=84 Identities=14% Similarity=0.257 Sum_probs=61.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++|++++. .++++++++.|+|||++++.+....... +.. . ..+..+.. ...+..++.++|.++
T Consensus 147 fD~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~--~~~--~--~~~~~~~~-~~~~~~~~~~e~~~~ 217 (272)
T PRK11873 147 VDVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL--PEE--I--RNDAELYA-GCVAGALQEEEYLAM 217 (272)
T ss_pred eeEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC--CHH--H--HHhHHHHh-ccccCCCCHHHHHHH
Confidence 5999999999988774 5899999999999999999998765421 110 1 11122221 223456789999999
Q ss_pred HHHcCCceeEEEE
Q 033647 88 AKAAGFQGFKVVC 100 (114)
Q Consensus 88 l~~aGf~~~~~~~ 100 (114)
|+++||..+++..
T Consensus 218 l~~aGf~~v~i~~ 230 (272)
T PRK11873 218 LAEAGFVDITIQP 230 (272)
T ss_pred HHHCCCCceEEEe
Confidence 9999999987654
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.77 E-value=1.1e-07 Score=68.64 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=60.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++||+++. ...|++++++|+|||.+++.+.+.+......... ... +. .|. ..-...+.+++..|
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p-~~r-y~-k~~---nv~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP-KDR-YA-KMK---NVYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc-hHH-HH-hcc---ccccCCCHHHHHHH
Confidence 6999999999999874 6899999999999999999877665432211000 000 00 010 00123578999999
Q ss_pred HHHcCCceeEEEEc
Q 033647 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
|++|||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999988765
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.77 E-value=1.1e-07 Score=66.11 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=70.1
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh-cc----c-cccC
Q 033647 4 SIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCF-ML----A-YTIG 75 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~ 75 (114)
|+|. .|+|.++..||+++| ..+.|++++|.|+|||++++.|...+..+..... ...+... .+ . ...+
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g~~~~~~ 188 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIGKLVAKD 188 (238)
T ss_pred CCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhceeeecC
Confidence 4566 499999999999997 5799999999999999999999888766432111 1111111 00 0 0111
Q ss_pred ce-----------ecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 033647 76 GR-----------EMTEQDFKTLAKAAGFQGFKVVCSA-FNTYIMEFLK 112 (114)
Q Consensus 76 g~-----------~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie~~~ 112 (114)
.. .-+.+++.++++++||+.++-.... |...+..+.|
T Consensus 189 ~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 189 AEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 11 2277899999999999998855554 4444554443
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.73 E-value=1.3e-07 Score=68.44 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=60.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|++..++||..|. ..+|+++++.|+|||.+++-..+.+......... ...... +- ..-..+|.+++.+|
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-~~~y~~--~~---~~~~lps~~~l~~~ 261 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-GDRYAK--MR---NVYFIPSVPALKNW 261 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-hhHHhc--Cc---cceeCCCHHHHHHH
Confidence 5999999999998774 6899999999999999988666555443211000 000000 10 00124689999999
Q ss_pred HHHcCCceeEEEEcC
Q 033647 88 AKAAGFQGFKVVCSA 102 (114)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (114)
|++|||+.+++....
T Consensus 262 L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 262 LERAGFKDVRIVDVS 276 (322)
T ss_pred HHHcCCceEEEEeCC
Confidence 999999999988653
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=98.65 E-value=3.2e-07 Score=66.81 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCC-chh-hhhhhhcchhccccccCceecCHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDT-SLA-SKQVIQLDCFMLAYTIGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
.|+|+...++||++|. .++++++++.|+|||+++|.+......... ... ......++..... ...-...+.++|.
T Consensus 187 FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~p~~~s~~~~~ 263 (340)
T PLN02244 187 FDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA-YYLPAWCSTSDYV 263 (340)
T ss_pred ccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh-ccCCCCCCHHHHH
Confidence 5999999999999874 689999999999999999988754322111 000 0000111100000 0001124789999
Q ss_pred HHHHHcCCceeEEEEc
Q 033647 86 TLAKAAGFQGFKVVCS 101 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~~ 101 (114)
++++++||..+++...
T Consensus 264 ~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 264 KLAESLGLQDIKTEDW 279 (340)
T ss_pred HHHHHCCCCeeEeeeC
Confidence 9999999999987765
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.63 E-value=3.4e-07 Score=69.11 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+...+++|+++. .++|+++++.|+|||++++.+....+...... ....+. ..+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~------~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---FAEYIK------QRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---HHHHHH------hcCCCCCCHHHHHHH
Confidence 5999999999999874 68999999999999999999987654322211 111110 123356789999999
Q ss_pred HHHcCCceeEEEEc
Q 033647 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
++++||+.+++...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999877654
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.61 E-value=3.6e-07 Score=62.45 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=59.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++|++++ ...+++++++.|+|||++++.+...+...... . + ....-..+.++|.++
T Consensus 68 fD~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~--~------~~~~~~~s~~~~~~~ 131 (224)
T smart00828 68 YDLVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE------H--E------ETTSYLVTREEWAEL 131 (224)
T ss_pred CCEeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc------c--c------ccccccCCHHHHHHH
Confidence 699999999999987 46999999999999999999987543211000 0 0 001113578999999
Q ss_pred HHHcCCceeEEEEcC
Q 033647 88 AKAAGFQGFKVVCSA 102 (114)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (114)
++++||+.++.....
T Consensus 132 l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 132 LARNNLRVVEGVDAS 146 (224)
T ss_pred HHHCCCeEEEeEECc
Confidence 999999999888764
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.50 E-value=3.8e-07 Score=66.08 Aligned_cols=92 Identities=8% Similarity=-0.027 Sum_probs=58.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++||++|. ..+|+++++.|+|||.+++.........-........+......-..-...+.++.+|+.++
T Consensus 199 FD~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l 276 (322)
T PLN02396 199 FDAVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI 276 (322)
T ss_pred CCEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence 6999999999999986 58999999999999999987643211000000000000111000000001235799999999
Q ss_pred HHHcCCceeEEEEc
Q 033647 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
|+++||+.+++..+
T Consensus 277 L~~aGf~i~~~~G~ 290 (322)
T PLN02396 277 LQRASVDVKEMAGF 290 (322)
T ss_pred HHHcCCeEEEEeee
Confidence 99999999887543
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.47 E-value=1.1e-06 Score=61.48 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=54.4
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhh--hhcchhc--cccccCceecCHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQV--IQLDCFM--LAYTIGGREMTEQ 82 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~g~~rt~~ 82 (114)
.+|+|++..++|+++|. .++++++++.|+|||++++........+......... ..+.... .....+....+.+
T Consensus 89 ~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 89 DTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 36999999999999874 6899999999999999988632111111100000000 0011100 0001122346899
Q ss_pred HHHHHHHHcCCceeE
Q 033647 83 DFKTLAKAAGFQGFK 97 (114)
Q Consensus 83 e~~~ll~~aGf~~~~ 97 (114)
++.++|++|||+...
T Consensus 167 ~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 167 GYAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999998543
No 26
>PRK08317 hypothetical protein; Provisional
Probab=98.47 E-value=9.8e-07 Score=60.15 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=57.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc-hhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS-LASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
+|+|++.+++|++++. ..+++++.+.|+|||.+++.+...+.....+ ............ . ......++..+|.+
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 162 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW-S--DHFADPWLGRRLPG 162 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH-H--hcCCCCcHHHHHHH
Confidence 6999999999999874 6889999999999999999885432211110 000011111110 0 01122345678999
Q ss_pred HHHHcCCceeEEEE
Q 033647 87 LAKAAGFQGFKVVC 100 (114)
Q Consensus 87 ll~~aGf~~~~~~~ 100 (114)
+++++||+.+++..
T Consensus 163 ~l~~aGf~~~~~~~ 176 (241)
T PRK08317 163 LFREAGLTDIEVEP 176 (241)
T ss_pred HHHHcCCCceeEEE
Confidence 99999999876544
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.44 E-value=9.1e-07 Score=66.82 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=59.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++|++++++..++++++++.|+|||++++.|......... ... ......|+..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~~--------~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KRK--------NNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------ccc--------CCCCeecChHHHHHH
Confidence 599999999999999988999999999999999999999775443211 000 123345678899999
Q ss_pred HHHcCCcee
Q 033647 88 AKAAGFQGF 96 (114)
Q Consensus 88 l~~aGf~~~ 96 (114)
+.++||...
T Consensus 170 f~~~~~~~~ 178 (475)
T PLN02336 170 FKECHTRDE 178 (475)
T ss_pred HHHheeccC
Confidence 999999865
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.36 E-value=1.1e-06 Score=61.39 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=58.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch----hhhhhhhcchhccccccCceecCHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSL----ASKQVIQLDCFMLAYTIGGREMTEQD 83 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (114)
+|+|++.+++|++++. ..+|+++.+.|+|||.+++............. .......+..............+.++
T Consensus 113 fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255)
T PRK11036 113 VDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255)
T ss_pred CCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence 6999999999999875 58999999999999999987654321100000 00000000000000000112357899
Q ss_pred HHHHHHHcCCceeEEEEcCC
Q 033647 84 FKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 84 ~~~ll~~aGf~~~~~~~~~~ 103 (114)
+.++|+++||++++...+.+
T Consensus 191 l~~~l~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 191 VYQWLEEAGWQIMGKTGVRV 210 (255)
T ss_pred HHHHHHHCCCeEeeeeeEEE
Confidence 99999999999987766543
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.35 E-value=4.6e-06 Score=56.34 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=54.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++|++++++...++++++++|+|||.+++++.+..++...+ -.. -...+.+|+.++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~el~~~ 159 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VGF--------PFAFKEGELRRY 159 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CCC--------CCccCHHHHHHH
Confidence 6999999999999988899999999999999999888776654331100 000 112567888888
Q ss_pred HHHcCCceeEE
Q 033647 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
++ ||+.+..
T Consensus 160 ~~--~~~~~~~ 168 (197)
T PRK11207 160 YE--GWEMVKY 168 (197)
T ss_pred hC--CCeEEEe
Confidence 86 8887765
No 30
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=3.8e-06 Score=57.29 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=65.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...+|+...| .++.|+++++.|+|||+++++|++..+...-. ...+...+...- ....|...+.+.| +.
T Consensus 146 ~DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n--~i~q~v~ep~~~-~~~dGC~ltrd~~-e~ 219 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWN--RILQQVAEPLWH-LESDGCVLTRDTG-EL 219 (252)
T ss_pred eeeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHH--HHHHHHhchhhh-eeccceEEehhHH-HH
Confidence 599999999996655 79999999999999999999999988764211 112223333222 2456777777555 56
Q ss_pred HHHcCCceeEEEEcCCc
Q 033647 88 AKAAGFQGFKVVCSAFN 104 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~ 104 (114)
|++|.|+..+.......
T Consensus 220 Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 220 LEDAEFSIDSCKRFNFG 236 (252)
T ss_pred hhhcccccchhhcccCC
Confidence 67799998877666443
No 31
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.28 E-value=4.4e-06 Score=58.54 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh--hcchhc--ccccc---
Q 033647 4 SIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVI--QLDCFM--LAYTI--- 74 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~--- 74 (114)
|+|. .|.|.+..-+-.|+|- .+.|+++++.|+|||++.+.|+-.-+.+. ..++.. .++... ..+..
T Consensus 172 pFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDR 246 (296)
T ss_pred CCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhH
Confidence 3555 5999999999999994 69999999999999999999976554311 111111 111110 00000
Q ss_pred -------Cc--eecCHHHHHHHHHHcCCceeE
Q 033647 75 -------GG--REMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 75 -------~g--~~rt~~e~~~ll~~aGf~~~~ 97 (114)
.+ +.-+.+++..+.++|||..+.
T Consensus 247 ~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11 122788999999999999886
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.27 E-value=1.2e-05 Score=54.24 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=54.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++|++++++...+++++++.|+|||.+++++....+..... .. .....+.+|+.++
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~ 158 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--------MP--------FSFTFKEDELRQY 158 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--------CC--------cCccCCHHHHHHH
Confidence 7999999999999988889999999999999999888776543321100 00 0113568888888
Q ss_pred HHHcCCceeEEE
Q 033647 88 AKAAGFQGFKVV 99 (114)
Q Consensus 88 l~~aGf~~~~~~ 99 (114)
++ +|+.....
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 84 67776655
No 33
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=4.3e-06 Score=58.08 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=65.2
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCce---ecCHHHHH
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGR---EMTEQDFK 85 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~rt~~e~~ 85 (114)
|.+.+-.+|...+.+.-.+.+.++++.|+|||.|++-|+-..+--.... .....++-+..+ .+.|. -.+.+++.
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF--~~~~~i~~nfYV-RgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF--KKGQCISENFYV-RGDGTRAYFFTEEELD 222 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc--cCCceeecceEE-ccCCceeeeccHHHHH
Confidence 9999999999999999999999999999999999999987765421100 012234444442 34443 23999999
Q ss_pred HHHHHcCCceeEE
Q 033647 86 TLAKAAGFQGFKV 98 (114)
Q Consensus 86 ~ll~~aGf~~~~~ 98 (114)
+|+.+|||..++.
T Consensus 223 ~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 223 ELFTKAGFEEVQL 235 (264)
T ss_pred HHHHhcccchhcc
Confidence 9999999997753
No 34
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.17 E-value=9.9e-06 Score=55.67 Aligned_cols=89 Identities=8% Similarity=0.045 Sum_probs=56.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhh--hhhcchhccccccCceecCHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQ--VIQLDCFMLAYTIGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
+|+|++.+++++.++. ..+|+++.+.|+|||++++.... . .......... ...+..........++..+.++|.
T Consensus 115 fD~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T PRK05134 115 FDVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLN-R-NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA 190 (233)
T ss_pred ccEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecC-C-ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence 6999999999998874 57899999999999999876432 1 1110000000 001110000000113345889999
Q ss_pred HHHHHcCCceeEEEE
Q 033647 86 TLAKAAGFQGFKVVC 100 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~ 100 (114)
++++++||+.++...
T Consensus 191 ~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 191 AWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHCCCeEeeeee
Confidence 999999999987764
No 35
>PRK04266 fibrillarin; Provisional
Probab=98.16 E-value=1.9e-05 Score=54.62 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=52.2
Q ss_pred ceEEEeccccccCChH-HHHHHHHHHHHhCCCCcEEEEE-eeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHH
Q 033647 8 AEAIFMKWICHNWSEE-ACVKILKNCYEALPEDGKVIVV-DCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~-~~~~lL~~~~~aL~pgg~l~i~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
.|+++ |+.++. +...+|+++++.|+|||+++|. .. .+-+... ... +..++..
T Consensus 142 ~D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~d~~~-------------------~~~-~~~~~~~ 195 (226)
T PRK04266 142 VDVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSIDVTK-------------------DPK-EIFKEEI 195 (226)
T ss_pred CCEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccccCcC-------------------CHH-HHHHHHH
Confidence 57776 555543 3456789999999999999994 22 1000000 001 1124556
Q ss_pred HHHHHcCCceeEEEEcCCc---eeEEEEEeC
Q 033647 86 TLAKAAGFQGFKVVCSAFN---TYIMEFLKN 113 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~~~~~---~~~ie~~~~ 113 (114)
++++++||+.++.....+. +..+.+++|
T Consensus 196 ~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 196 RKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred HHHHHcCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 9999999999999887654 777777764
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.16 E-value=1.7e-06 Score=50.77 Aligned_cols=39 Identities=21% Similarity=0.484 Sum_probs=33.3
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 4 SIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
++|. .|+|++.+++|++ ++..++++++++.|+|||+++|
T Consensus 55 ~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 3444 4999999999999 4568999999999999999986
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.14 E-value=9.3e-06 Score=55.33 Aligned_cols=89 Identities=8% Similarity=0.035 Sum_probs=56.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccc-c-ccCceecCHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLA-Y-TIGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~rt~~e~~ 85 (114)
+|++++.+++|+..+. ..+|+++++.|+|||.+++....... ...........+...... . .......+.++|.
T Consensus 113 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 188 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTP--KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELT 188 (224)
T ss_pred ccEEEehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCc--hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHH
Confidence 6999999999999875 58999999999999999886542111 000000000000000000 0 0112344788999
Q ss_pred HHHHHcCCceeEEEE
Q 033647 86 TLAKAAGFQGFKVVC 100 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~ 100 (114)
++++++||+.+++..
T Consensus 189 ~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 189 SWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHcCCeeeeeee
Confidence 999999999987763
No 38
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.13 E-value=3.2e-05 Score=55.47 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=32.6
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
.++++.+.+|+++++++.++|++++++|+|||.++|
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 467777899999999999999999999999999986
No 39
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.10 E-value=1.8e-06 Score=60.89 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=50.3
Q ss_pred EEEeccccccCCh-HHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHH
Q 033647 10 AIFMKWICHNWSE-EACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLA 88 (114)
Q Consensus 10 ~vl~~~vlh~~~d-~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (114)
++++..+||+.+| ++...+++.++++|.|||.|+|.....+..+.. .......+.. ....+..||.+|+.++|
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~--~~~~~~~~~~----~~~~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER--AEALEAVYAQ----AGSPGRPRSREEIAAFF 226 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH--HHHHHHHHHH----CCS----B-HHHHHHCC
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH--HHHHHHHHHc----CCCCceecCHHHHHHHc
Confidence 6889999999998 679999999999999999999988766543211 1112222221 13457889999999999
Q ss_pred HHcCCceeE
Q 033647 89 KAAGFQGFK 97 (114)
Q Consensus 89 ~~aGf~~~~ 97 (114)
.||+.++
T Consensus 227 --~g~elve 233 (267)
T PF04672_consen 227 --DGLELVE 233 (267)
T ss_dssp --TTSEE-T
T ss_pred --CCCccCC
Confidence 5998763
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.03 E-value=8.4e-06 Score=57.86 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=61.8
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|.|+.-.++.|+..+....+++++.+.|+|||++++......+.+..........++.-. ...+|...+.+++..
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILR 203 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHH
Confidence 37999999999999988889999999999999999999877765432110000000111111 246777788999999
Q ss_pred HHHHcCCceeEEEEc
Q 033647 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
.++++||++.++...
T Consensus 204 ~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 204 AAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHTT-EEEEEEE-
T ss_pred HHhcCCEEEEEEEEc
Confidence 999999999888765
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.03 E-value=6e-05 Score=53.69 Aligned_cols=74 Identities=15% Similarity=0.046 Sum_probs=55.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++|++++++...+++++.+.|+|||.++++.....+....+ . ..-...+..|+.++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~~~~~~el~~~ 248 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSFTFKEGELKDY 248 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCcccCHHHHHHH
Confidence 6999999999999988899999999999999999888765543331110 0 00122568899999
Q ss_pred HHHcCCceeEEE
Q 033647 88 AKAAGFQGFKVV 99 (114)
Q Consensus 88 l~~aGf~~~~~~ 99 (114)
+ .+|++++..
T Consensus 249 ~--~~~~i~~~~ 258 (287)
T PRK12335 249 Y--QDWEIVKYN 258 (287)
T ss_pred h--CCCEEEEEe
Confidence 9 468887764
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.96 E-value=1.3e-05 Score=56.50 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=36.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.|+|++++++|++++++..++++++++.|+|||.+++-.
T Consensus 204 fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 204 FDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 599999999999999989999999999999999998853
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.95 E-value=7.3e-05 Score=51.01 Aligned_cols=90 Identities=7% Similarity=-0.076 Sum_probs=56.2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
..|++++..+++++++++..++++++.+.+++++.+.+ .+..............+.-... ..+-..++.+++.+
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 192 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKTAWLAFLKMIGELFPGSSR--ATSAYLHPMTDLER 192 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCchHHHHHHHHHhhCcCccc--ccceEEecHHHHHH
Confidence 36999999999999988888999999988876544332 1211110000000111110000 11234568999999
Q ss_pred HHHHcCCceeEEEEcC
Q 033647 87 LAKAAGFQGFKVVCSA 102 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~ 102 (114)
+++++||+++......
T Consensus 193 ~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 193 ALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHcCceeeeeeccc
Confidence 9999999999887654
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.94 E-value=7.5e-06 Score=48.99 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=24.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKV 42 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l 42 (114)
.+|+|++.+++|++++ ...+++++++.|+|||++
T Consensus 66 ~fD~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 66 SFDLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred ccceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 4799999999999944 679999999999999986
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.93 E-value=8.2e-05 Score=50.81 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=55.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhc-cccccCceecCHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFM-LAYTIGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~ 86 (114)
.|+++...++|++++++...+++++.+.++ ||.++.. .+..+... .......... ..........+.++|.+
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~---~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 200 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTF---APYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRR 200 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEE---CCccHHHH---HHHHhccccCCccCCCCccccCHHHHHH
Confidence 699999999999999999999999998664 3333332 12111100 0000100000 00012234568899999
Q ss_pred HHHHcCCceeEEEEcCC
Q 033647 87 LAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~~ 103 (114)
+++++||+..++.+...
T Consensus 201 ~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 201 ALAAAGFKVVRTERISS 217 (230)
T ss_pred HHHHCCCceEeeeeccc
Confidence 99999999998877653
No 46
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.92 E-value=0.0001 Score=52.96 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=59.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|++--||-|..+. ...|++++++|+|||.+++=-.+++.+........-. +. . | ..--..-|.+.+..|
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~r--Ya-~-m--~nv~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDR--YA-K-M--RNVWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCc--cc-C-C--CceEEeCCHHHHHHH
Confidence 4999999999988874 7999999999999999987444444332210000000 00 0 1 011134489999999
Q ss_pred HHHcCCceeEEEEcC
Q 033647 88 AKAAGFQGFKVVCSA 102 (114)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (114)
|+.+||+.++++.+.
T Consensus 255 l~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 255 LERAGFKDVRCVDVS 269 (315)
T ss_pred HHHcCCceEEEecCc
Confidence 999999999998763
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.91 E-value=9.1e-05 Score=54.93 Aligned_cols=86 Identities=7% Similarity=-0.074 Sum_probs=61.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+...++++.+++....+++++++.|+|||++++.+...+...... ..+.+.. ...+|...+.+++.+.
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~ 300 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQA 300 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHH
Confidence 6999999999999888788999999999999999999876554332111 1112111 1245666788888887
Q ss_pred HHHcCCceeEEEEcC
Q 033647 88 AKAAGFQGFKVVCSA 102 (114)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (114)
++ .||.+.++...+
T Consensus 301 ~~-~~~~v~d~~~~~ 314 (383)
T PRK11705 301 SE-GLFVMEDWHNFG 314 (383)
T ss_pred HH-CCcEEEEEecCh
Confidence 66 689888776553
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.89 E-value=7.1e-05 Score=54.20 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=51.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++||+++++...+++++.+ +.+| +++|. ..+..............+. ... .....-.++.+++.++
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs--~~p~~~~~~~l~~~g~~~~-g~~-~~~r~y~~s~eel~~l 286 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIIS--FAPKTLYYDILKRIGELFP-GPS-KATRAYLHAEADVERA 286 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEE--eCCcchHHHHHHHHHhhcC-CCC-cCceeeeCCHHHHHHH
Confidence 699999999999999887888888875 4554 44442 2222211000000000110 000 0001123489999999
Q ss_pred HHHcCCceeEEEEcC
Q 033647 88 AKAAGFQGFKVVCSA 102 (114)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (114)
|+++||++.+..-..
T Consensus 287 L~~AGf~v~~~~~~~ 301 (315)
T PLN02585 287 LKKAGWKVARREMTA 301 (315)
T ss_pred HHHCCCEEEEEEEee
Confidence 999999987655443
No 49
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.86 E-value=0.00034 Score=48.01 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=63.1
Q ss_pred CCC-CCCc-----ceEEEeccccccCChH-HHHHHHHHHHHhCCCCcE-----EEEEeeecCCCCCCchhhhhhhhcchh
Q 033647 1 MFV-SIPK-----AEAIFMKWICHNWSEE-ACVKILKNCYEALPEDGK-----VIVVDCILPVLPDTSLASKQVIQLDCF 68 (114)
Q Consensus 1 ~f~-~~p~-----~D~vl~~~vlh~~~d~-~~~~lL~~~~~aL~pgg~-----l~i~e~~~~~~~~~~~~~~~~~~~~~~ 68 (114)
||+ |+|. .|+|.++-||-..|+. +.-++|+++++-|+|+|. ++| ++|..
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl---VlP~~---------------- 152 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFL---VLPLP---------------- 152 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEE---EeCch----------------
Confidence 453 5663 5999999999999964 578899999999999998 655 33322
Q ss_pred ccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 69 MLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 69 ~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
+..|++-.+.+.|.++++.-||..++-...
T Consensus 153 ---Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 153 ---CVTNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred ---HhhcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 345777788999999999999999887655
No 50
>PRK06202 hypothetical protein; Provisional
Probab=97.84 E-value=4.3e-05 Score=52.62 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=55.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccC-----ceecCHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIG-----GREMTEQ 82 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~rt~~ 82 (114)
+|+|++..++||++|++..++|+++++.++ |.+++.|...+...- ............... ...+ -+-++.+
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~-~~~~~~~~~~~~~~~-~~~d~~~s~~~~~~~~ 205 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAY-ALFWAGTRLLSRSSF-VHTDGLLSVRRSYTPA 205 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHH-HHHHHHHHHhccCce-eeccchHHHHhhcCHH
Confidence 699999999999999888899999999987 566665544432100 000000000000000 0011 2356899
Q ss_pred HHHHHHHHcCCceeEEEEc
Q 033647 83 DFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~ 101 (114)
|+.+++++ ||++....+.
T Consensus 206 el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 206 ELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHHhhC-CCeEEeccce
Confidence 99999999 9998777654
No 51
>PTZ00146 fibrillarin; Provisional
Probab=97.83 E-value=0.00065 Score=48.73 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=52.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
..|+|++... ..++...++.++++.|+|||.++|.- -....... ..-.++=.+|. +
T Consensus 202 ~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id~g------------------~~pe~~f~~ev-~ 257 (293)
T PTZ00146 202 MVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIISI-KANCIDST------------------AKPEVVFASEV-Q 257 (293)
T ss_pred CCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEEE-eccccccC------------------CCHHHHHHHHH-H
Confidence 3698877663 12355677788999999999999931 11111110 00011102344 8
Q ss_pred HHHHcCCceeEEEEcCC---ceeEEEEEeC
Q 033647 87 LAKAAGFQGFKVVCSAF---NTYIMEFLKN 113 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~~---~~~~ie~~~~ 113 (114)
+|+++||+.++.+.+.+ .++++.++.+
T Consensus 258 ~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 258 KLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred HHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 89999999998888754 4777776654
No 52
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.75 E-value=4.2e-05 Score=54.68 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=35.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|+|+.+|++.+++++...+++++++++|+|||.|++-
T Consensus 224 fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 224 FDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred cceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 59999999999999999999999999999999988764
No 53
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.73 E-value=6.6e-05 Score=45.58 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=34.4
Q ss_pred CcceEEEecc-ccccCCh-HHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 6 PKAEAIFMKW-ICHNWSE-EACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 6 p~~D~vl~~~-vlh~~~d-~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+.+|+|++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 69 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 69 EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3479999999 6775554 578999999999999999999865
No 54
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.70 E-value=0.00013 Score=49.79 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=53.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+..+++|+.++ ..++|+++++.|+|||.+++.+...+... . ....+. .......+.++|.++
T Consensus 99 fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~---~---~~~~~~------~~~~~~~~~~~~~~~ 164 (240)
T TIGR02072 99 FDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLH---E---LRQSFG------QHGLRYLSLDELKAL 164 (240)
T ss_pred eeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHH---H---HHHHHH------HhccCCCCHHHHHHH
Confidence 699999999998866 46899999999999999998754332110 0 001111 012344678899999
Q ss_pred HHHcCCceeEEE
Q 033647 88 AKAAGFQGFKVV 99 (114)
Q Consensus 88 l~~aGf~~~~~~ 99 (114)
++++ |+...+.
T Consensus 165 l~~~-f~~~~~~ 175 (240)
T TIGR02072 165 LKNS-FELLTLE 175 (240)
T ss_pred HHHh-cCCcEEE
Confidence 9988 8866543
No 55
>PRK06922 hypothetical protein; Provisional
Probab=97.67 E-value=7.2e-05 Score=58.67 Aligned_cols=45 Identities=29% Similarity=0.418 Sum_probs=39.3
Q ss_pred ceEEEeccccccC-----------ChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 8 AEAIFMKWICHNW-----------SEEACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 8 ~D~vl~~~vlh~~-----------~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
+|+|+++.++|+| ++++..++|++++++|+|||++++.|.+.++.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~ 543 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED 543 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence 5999999999986 35678999999999999999999999876644
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.65 E-value=0.0013 Score=43.50 Aligned_cols=77 Identities=19% Similarity=0.137 Sum_probs=56.1
Q ss_pred cceEEEeccccccCChHH-------------------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcch
Q 033647 7 KAEAIFMKWICHNWSEEA-------------------CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDC 67 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~-------------------~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~ 67 (114)
.+|++++...+|+.+++. ..++++++.+.|+|||++++++....
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------- 144 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------- 144 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------
Confidence 369999998887665421 35789999999999999998762221
Q ss_pred hccccccCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEEe
Q 033647 68 FMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLK 112 (114)
Q Consensus 68 ~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~~ 112 (114)
...++.++++++||+...+...+-.+--+++.|
T Consensus 145 ------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 ------------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ------------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 145778899999999988877765555444443
No 57
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.58 E-value=5.8e-05 Score=51.17 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=33.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|+|+++|||-.++++...+++++++++|+|||.|++-
T Consensus 137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 59999999999999999999999999999999999884
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00027 Score=50.43 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=70.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|-|+.--+++|+..+.-...++++++.|+|||+++++....++.+... ...+..-. ...+|...+.+++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~~~i~~y---iFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FPDFIDKY---IFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----chHHHHHh---CCCCCcCCCHHHHHHH
Confidence 6999999999999998889999999999999999999887777654311 11111111 2468888899999999
Q ss_pred HHHcCCceeEEEEcCC
Q 033647 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
.+++||.+.+....+.
T Consensus 211 ~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 211 ASEAGFVVLDVESLRP 226 (283)
T ss_pred HHhcCcEEehHhhhcH
Confidence 9999999988776543
No 59
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.58 E-value=2e-05 Score=50.84 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=51.7
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|+...++|++++. ..+++++.+.|++||.+++.+....+.-.. ....... +..........+ . +.++|..
T Consensus 73 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~ 146 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPE-QLEELMN-LYSEVWSMIYIG-N-DKEEWKY 146 (152)
T ss_dssp TEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHH-HHHHHHH-HHHHHHHHCC-----CCCGHHH
T ss_pred CeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHH-HHHHHHH-HHHHHhhhhhcc-c-CHHHHHH
Confidence 47999999999999885 589999999999999999998873221100 0100001 000111001112 2 7889999
Q ss_pred HHHHcC
Q 033647 87 LAKAAG 92 (114)
Q Consensus 87 ll~~aG 92 (114)
+|++||
T Consensus 147 ~~~~ag 152 (152)
T PF13847_consen 147 ILEEAG 152 (152)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 999998
No 60
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.56 E-value=0.0011 Score=47.59 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=65.3
Q ss_pred CcceEEEeccccccCChHH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh-c-cccccCceecCHH
Q 033647 6 PKAEAIFMKWICHNWSEEA-CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCF-M-LAYTIGGREMTEQ 82 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~-~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~rt~~ 82 (114)
|.-++++++-++--++|.+ ....|+.+.+++.|||.++-.- +|..|..+..+..+... - ..|. -+-||..
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg-----QPwHPQle~IAr~LtsHr~g~~Wv--MRrRsq~ 280 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG-----QPWHPQLEMIARVLTSHRDGKAWV--MRRRSQA 280 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC-----CCCCcchHHHHHHHhcccCCCceE--EEecCHH
Confidence 3348999999998899976 5557999999999999997643 33333211111111110 0 0000 2578999
Q ss_pred HHHHHHHHcCCceeE-EEEcCCceeEEEEEe
Q 033647 83 DFKTLAKAAGFQGFK-VVCSAFNTYIMEFLK 112 (114)
Q Consensus 83 e~~~ll~~aGf~~~~-~~~~~~~~~~ie~~~ 112 (114)
|..+|+++|||+-.+ .+.--|-|++-.|++
T Consensus 281 EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 281 EMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999999654 344446677777653
No 61
>PRK05785 hypothetical protein; Provisional
Probab=97.54 E-value=0.0008 Score=46.44 Aligned_cols=100 Identities=8% Similarity=-0.098 Sum_probs=59.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhh-hhhhcchhccccccCce--------
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSL-ASK-QVIQLDCFMLAYTIGGR-------- 77 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~-------- 77 (114)
.|+|++...+|+++|. .+.|+++++.|+| .+.++|...++...... ... ..............+..
T Consensus 111 fD~v~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~s 186 (226)
T PRK05785 111 FDVVMSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYI 186 (226)
T ss_pred EEEEEecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5999999999998874 6899999999999 34466765443321100 000 00000000000011111
Q ss_pred ---ecCHHHHHHHHHHcCCceeEEEEcCC-ceeEEEEEe
Q 033647 78 ---EMTEQDFKTLAKAAGFQGFKVVCSAF-NTYIMEFLK 112 (114)
Q Consensus 78 ---~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~ie~~~ 112 (114)
-.+.+++.++++++| ..++.....+ ..+++.++|
T Consensus 187 i~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 187 YERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 227789999999974 6677777754 456777765
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=97.50 E-value=0.00016 Score=51.90 Aligned_cols=37 Identities=11% Similarity=0.262 Sum_probs=34.4
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
.+|+|++. ++|+|..++..++|+++++.|+|||.+++
T Consensus 195 ~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 195 EYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred CcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 46999999 99999888889999999999999999987
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.48 E-value=0.0011 Score=46.29 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=32.8
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
..|+++...++|+.+|. .+++++++++|+|||.+++.
T Consensus 93 ~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 93 ALDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 36999999999988774 68999999999999999884
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.45 E-value=0.00017 Score=48.86 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=50.0
Q ss_pred ceEEEeccccccCCh-HHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 8 AEAIFMKWICHNWSE-EACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d-~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
+|+++++-+++.+++ ++...+++++.++|+|||.+++...... . ...+. -....+.+.+
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----~-----c~~wg----------h~~ga~tv~~ 166 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----N-----CRRWG----------HAAGAETVLE 166 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----H-----HHHTT-----------S--HHHHHH
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----c-----ccccC----------cccchHHHHH
Confidence 599999999999986 6788999999999999999999765211 0 11111 1224677888
Q ss_pred HHHHcCCceeEEEEc
Q 033647 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
+|++. |..++.+.+
T Consensus 167 ~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 167 MLQEH-LTEVERVEC 180 (201)
T ss_dssp HHHHH-SEEEEEEEE
T ss_pred HHHHH-hhheeEEEE
Confidence 88754 455555544
No 65
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.45 E-value=0.00041 Score=48.92 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCc-ceEEEeccccccCC--hHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCH
Q 033647 5 IPK-AEAIFMKWICHNWS--EEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTE 81 (114)
Q Consensus 5 ~p~-~D~vl~~~vlh~~~--d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
+|. +|+++...+|-.-+ .++-.+.++++.+.|+|||.|+++...-. .. +..+- .....-.-++
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~-t~---------Y~vG~----~~F~~l~l~e 220 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS-TY---------YMVGG----HKFPCLPLNE 220 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS--SE---------EEETT----EEEE---B-H
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc-ee---------EEECC----EecccccCCH
Confidence 465 89999999887644 35688999999999999999999775322 10 00000 0011123478
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 033647 82 QDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~ 100 (114)
+.+++-|++|||.+.+...
T Consensus 221 e~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 221 EFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHcCCEEEeccc
Confidence 8999999999999988774
No 66
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.44 E-value=0.0008 Score=46.76 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=52.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+....+|..+| ...+|+++++.|+|||.+++.....+..+ .. ...+...-. ......-.+.++|.++
T Consensus 104 fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---el---~~~~~~~~~-~~~~~~~~~~~~l~~~ 174 (251)
T PRK10258 104 FDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP---EL---HQAWQAVDE-RPHANRFLPPDAIEQA 174 (251)
T ss_pred EEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH---HH---HHHHHHhcc-CCccccCCCHHHHHHH
Confidence 599999999986665 46899999999999999998765433221 11 111110000 0112234588999999
Q ss_pred HHHcCCce
Q 033647 88 AKAAGFQG 95 (114)
Q Consensus 88 l~~aGf~~ 95 (114)
++.+|++.
T Consensus 175 l~~~~~~~ 182 (251)
T PRK10258 175 LNGWRYQH 182 (251)
T ss_pred HHhCCcee
Confidence 99888874
No 67
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.36 E-value=0.00016 Score=43.40 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=29.8
Q ss_pred ceEEEec-cccccCChHHHHHHHHHHHHhCCCCc
Q 033647 8 AEAIFMK-WICHNWSEEACVKILKNCYEALPEDG 40 (114)
Q Consensus 8 ~D~vl~~-~vlh~~~d~~~~~lL~~~~~aL~pgg 40 (114)
+|+|+.. .++|++++++..++++++.+.|+|||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 6999995 55999999999999999999999997
No 68
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.33 E-value=0.00026 Score=49.27 Aligned_cols=89 Identities=6% Similarity=-0.023 Sum_probs=58.2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh-hhh--hhhcchhcc-ccccCceecCHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLA-SKQ--VIQLDCFML-AYTIGGREMTEQ 82 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~-~~~--~~~~~~~~~-~~~~~g~~rt~~ 82 (114)
.+|+|+.-.|++|.+|.+ .++++|.+-++|||.+++...... .. +.. ... ...+....- ++ .-.+...++
T Consensus 124 ~FDvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt--~k-a~~~~i~~ae~vl~~vP~gTH-~~~k~irp~ 197 (243)
T COG2227 124 QFDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRT--LK-AYLLAIIGAEYVLRIVPKGTH-DYRKFIKPA 197 (243)
T ss_pred CccEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccC--HH-HHHHHHHHHHHHHHhcCCcch-hHHHhcCHH
Confidence 479999999999999974 699999999999999988654421 11 100 000 011111110 00 113455788
Q ss_pred HHHHHHHHcCCceeEEEEc
Q 033647 83 DFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~ 101 (114)
|...++.++|+...+...+
T Consensus 198 El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 198 ELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHHHhcccCCceEEeecce
Confidence 9999999999998776544
No 69
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.25 E-value=0.00065 Score=45.96 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=49.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++++++.+...++++++.++++|||.+++...+..++...+ .. ....+...|+...
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f~~~~~EL~~~ 158 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPFLLKPGELREY 158 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHH
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCcccCHHHHHHH
Confidence 6999998999999999999999999999999999988665433221100 01 1122445678888
Q ss_pred HHHcCCceeEE
Q 033647 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
+ +||++++.
T Consensus 159 y--~dW~il~y 167 (192)
T PF03848_consen 159 Y--ADWEILKY 167 (192)
T ss_dssp T--TTSEEEEE
T ss_pred h--CCCeEEEE
Confidence 8 58887653
No 70
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.19 E-value=0.00043 Score=48.83 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=58.8
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccC-----ceecCH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIG-----GREMTE 81 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~rt~ 81 (114)
.+|+|+.+.+++|..| ...+++.+.+.|+|||+++|......-..-.. ..+++-..+..... .+--+.
T Consensus 158 ~fDaVvcsevleHV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~-----~i~~~E~vl~ivp~Gth~~ekfi~p 230 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAG-----TIFLAEIVLRIVPKGTHTWEKFINP 230 (282)
T ss_pred ccceeeeHHHHHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhc-----cccHHHHHHHhcCCCCcCHHHcCCH
Confidence 3799999999999977 47999999999999999999764432111100 00111111111122 234478
Q ss_pred HHHHHHHHHcCCceeEEEEc
Q 033647 82 QDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~ 101 (114)
+|...+++++|++...+...
T Consensus 231 ~e~~~~l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 231 EELTSILNANGAQVNDVVGE 250 (282)
T ss_pred HHHHHHHHhcCcchhhhhcc
Confidence 89999999999988776543
No 71
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.13 E-value=0.004 Score=42.73 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=55.6
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCH
Q 033647 4 SIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTE 81 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
|++. .|+++++-.|-.-+ ....++++.+.|+|||.|.|.|.... + -+.
T Consensus 117 PL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SR-------------f--------------~~~ 166 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSR-------------F--------------ENV 166 (219)
T ss_dssp S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S-H
T ss_pred cCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEeccc-------------C--------------cCH
Confidence 4555 49999888774433 47899999999999999999984321 0 035
Q ss_pred HHHHHHHHHcCCceeEEEEcCCceeEEEEEeC
Q 033647 82 QDFKTLAKAAGFQGFKVVCSAFNTYIMEFLKN 113 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~~~ 113 (114)
+++.+.++..||+...-......+.+++.+|+
T Consensus 167 ~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 167 KQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp HHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred HHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 67888899999999886666677899998875
No 72
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.06 E-value=0.0014 Score=46.49 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=36.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|+|+++|||-.++.+...+++++.+++|+|||.|++-
T Consensus 203 fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 203 FDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred CCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 59999999999999999999999999999999999883
No 73
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.00 E-value=0.0033 Score=43.11 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=37.7
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
..|.++-+.++|+++.++..+.++++.++|+|||+++++-...
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 3599999999999999999999999999999999987765544
No 74
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0037 Score=42.58 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=52.9
Q ss_pred ceEEEeccccccCC-----hHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHH
Q 033647 8 AEAIFMKWICHNWS-----EEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQ 82 (114)
Q Consensus 8 ~D~vl~~~vlh~~~-----d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~ 82 (114)
.|+++.....|++. ..-+.++-+.++++|||||.++|.|+......... .... -.-++..
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~------dt~~---------~~ri~~a 187 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS------DTIT---------LHRIDPA 187 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh------hhhh---------hcccChH
Confidence 47777755555433 34478899999999999999999999887643211 0000 0113566
Q ss_pred HHHHHHHHcCCceeEEEEc
Q 033647 83 DFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~ 101 (114)
-..+..+++||+..--..+
T Consensus 188 ~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 188 VVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHHhhcceeeeeehh
Confidence 7788889999997644433
No 75
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.94 E-value=0.0093 Score=42.37 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=56.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+++++-.|-.- +....+.++++.|++||.+.|.|.-.- +. +...+..-
T Consensus 229 vDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~SR-------------f~--------------dv~~f~r~ 278 (325)
T KOG3045|consen 229 VDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIAEVKSR-------------FS--------------DVKGFVRA 278 (325)
T ss_pred ccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEEehhhh-------------cc--------------cHHHHHHH
Confidence 5887777666332 246789999999999999999883221 11 12336777
Q ss_pred HHHcCCceeEEEEcCCceeEEEEEeCC
Q 033647 88 AKAAGFQGFKVVCSAFNTYIMEFLKNP 114 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~~ie~~~~~ 114 (114)
|...||......-....+.+++.+|.|
T Consensus 279 l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 279 LTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHcCCeeeehhhhcceEEEEEEecCC
Confidence 888999998777777789999998875
No 76
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.93 E-value=0.0035 Score=42.65 Aligned_cols=47 Identities=6% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 3 VSIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 3 ~~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
++.+. .|+|++..++||+++++..++++++++.+ ++.++|.|...+.
T Consensus 99 ~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 99 DPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred CCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 34444 59999999999999888899999999986 6788888876543
No 77
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.74 E-value=0.0081 Score=42.46 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=52.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCC--------CCchhhhhhhhcchhccccccCceec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLP--------DTSLASKQVIQLDCFMLAYTIGGREM 79 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~r 79 (114)
+|+|-+-|+|..-.+ ...+|+.++++|+|+|++++.= ++|=.+ ..++. ..+++ .+..-+-
T Consensus 152 fDvIscLNvLDRc~~--P~~LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~~~~P~----e~l~~-----~g~~~E~ 219 (265)
T PF05219_consen 152 FDVISCLNVLDRCDR--PLTLLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGKSNRPS----ELLPV-----KGATFEE 219 (265)
T ss_pred eEEEeehhhhhccCC--HHHHHHHHHHHhCCCCEEEEEE-EecccccEEcCCCCCCCch----hhcCC-----CCCcHHH
Confidence 699999999976554 5899999999999999998753 333211 10110 01111 1111122
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
..+.+.+.|+.+||++.+....
T Consensus 220 ~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 220 QVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred HHHHHHHHHHhcCCEEEEEecc
Confidence 2334558899999999887655
No 78
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.71 E-value=0.0062 Score=41.89 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=51.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCC-CCchhhhhhhhcchhccccccCceecCHHHHH
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLP-DTSLASKQVIQLDCFMLAYTIGGREMTEQDFK 85 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
..|.++-+.++|+++.+...+.++++.++|+|||+++++-...++.. .+++ ...+.+|+.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~ 176 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVE 176 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHH
Confidence 35999999999999999999999999999999998665444333221 1110 135688888
Q ss_pred HHHHHcCCceeEEEE
Q 033647 86 TLAKAAGFQGFKVVC 100 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~ 100 (114)
++++. +|.+..+..
T Consensus 177 ~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 177 ALYAG-CFEIELLER 190 (218)
T ss_pred HHhcC-CceEEEeee
Confidence 88852 266554443
No 79
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.68 E-value=0.006 Score=35.15 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=33.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.+|+++....++++ .+....+++++.+.|+|||.+++.
T Consensus 66 ~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 66 SFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 37999999999875 556789999999999999999875
No 80
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.64 E-value=0.01 Score=39.76 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=49.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh-h-----hh--hhhcchhccccccCceec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLA-S-----KQ--VIQLDCFMLAYTIGGREM 79 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~-~-----~~--~~~~~~~~~~~~~~g~~r 79 (114)
+|+|++.+++|++++ ..++|+++.+.++ .+++. . +........ . .. ...+..... ...+.+..
T Consensus 76 fD~Vi~~~~l~~~~d--~~~~l~e~~r~~~---~~ii~-~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 146 (194)
T TIGR02081 76 FDYVILSQTLQATRN--PEEILDEMLRVGR---HAIVS-F--PNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFC 146 (194)
T ss_pred cCEEEEhhHhHcCcC--HHHHHHHHHHhCC---eEEEE-c--CChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccC
Confidence 699999999999987 4578888877644 44332 1 111000000 0 00 000000000 01234567
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
+.+++.++++++||++++....
T Consensus 147 s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 147 TIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred cHHHHHHHHHHCCCEEEEEEEe
Confidence 8999999999999999887654
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.60 E-value=0.038 Score=38.61 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=47.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+++.. +. .+....+++++.+.|+|||.+++.+.... ..+++.+.
T Consensus 180 fD~Vvan-i~----~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~ 225 (250)
T PRK00517 180 ADVIVAN-IL----ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEA 225 (250)
T ss_pred cCEEEEc-Cc----HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHH
Confidence 5877754 22 23356789999999999999998532210 24577888
Q ss_pred HHHcCCceeEEEEcCCceeEE
Q 033647 88 AKAAGFQGFKVVCSAFNTYIM 108 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~~i 108 (114)
+++.||+..+........+++
T Consensus 226 l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 226 YEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred HHHCCCEEEEEEEeCCEEEEE
Confidence 999999998887776555543
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=96.51 E-value=0.06 Score=35.32 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
...+++++.+.|+|||.+++... .. ...+++.++++++||+...+...
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~---~~--------------------------~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS---SL--------------------------TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc---cc--------------------------CCHHHHHHHHHHCCCeeeeeeec
Confidence 46789999999999999877531 00 12356788999999998776543
No 83
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.29 E-value=0.027 Score=37.44 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=39.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|++++....+++ ..+++.+.+.|+|||++++..... -+.+++.++
T Consensus 98 ~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~ 143 (187)
T PRK08287 98 ADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAH 143 (187)
T ss_pred CCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHH
Confidence 6999987765432 468899999999999997743211 013456678
Q ss_pred HHHcCCceeEE
Q 033647 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
++++||+.+++
T Consensus 144 l~~~g~~~~~~ 154 (187)
T PRK08287 144 LEKCGVSELDC 154 (187)
T ss_pred HHHCCCCcceE
Confidence 88888876554
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.21 E-value=0.03 Score=38.60 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEcC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
..+++++.+.|+|||.+++.- . ....+++.++++++||+.+++..-.
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~-----~-------------------------~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI-----G-------------------------YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE-----C-------------------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 478899999999999987721 0 0124678899999999988876543
No 85
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.0016 Score=42.77 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=36.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+++..|++-|++-++-...++.|++-|+|||.|-|.
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 69999999999999999999999999999999999875
No 86
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.18 E-value=0.025 Score=39.23 Aligned_cols=44 Identities=5% Similarity=-0.009 Sum_probs=39.4
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
..|+|+=+.++|+++++...+-.+++.+.|+|||+++++-.-.+
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 36999999999999999999999999999999999998865443
No 87
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.96 E-value=0.022 Score=41.79 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred ceEEEeccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 8 AEAIFMKWICHNW---SEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 8 ~D~vl~~~vlh~~---~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+|+|++.-.+|+. +.+...++++++.+.|+|||.++|+-+
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 6999999889863 345578999999999999999988643
No 88
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.78 E-value=0.018 Score=42.09 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=33.1
Q ss_pred CcceEEEecccccc-CCh-HHHHHHHHHHHHhCCCCcEEEE
Q 033647 6 PKAEAIFMKWICHN-WSE-EACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 6 p~~D~vl~~~vlh~-~~d-~~~~~lL~~~~~aL~pgg~l~i 44 (114)
|..|++=...++|. |.. ++++.+|+|+.+.|+|||.++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 44799999999997 554 5688899999999999999864
No 89
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=95.75 E-value=0.1 Score=36.84 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=53.9
Q ss_pred CCcceEEEecc----ccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecC
Q 033647 5 IPKAEAIFMKW----ICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMT 80 (114)
Q Consensus 5 ~p~~D~vl~~~----vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 80 (114)
.|++|+++.-. |==.|.|+-..++++++++-|.|||.+++ ++++...+. +.+.... .+..+..--...
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-----EPQpWksY~-kaar~~e--~~~~ny~~i~lk 235 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-----EPQPWKSYK-KAARRSE--KLAANYFKIFLK 235 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-----cCCchHHHH-HHHHHHH--HhhcCccceecC
Confidence 46688887644 43358999999999999999999999965 334444321 1111110 111123334557
Q ss_pred HHHHHHHHHHc--CCceeE
Q 033647 81 EQDFKTLAKAA--GFQGFK 97 (114)
Q Consensus 81 ~~e~~~ll~~a--Gf~~~~ 97 (114)
.+.+..|+.++ ||+.+.
T Consensus 236 p~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 236 PEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHHhhhhhhhhheeeec
Confidence 88999999987 566543
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.60 E-value=0.037 Score=41.20 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=32.3
Q ss_pred ceEEEecccc---ccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWIC---HNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vl---h~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+|+|++.--+ |.++++.+.++++++++.|+|||.++++-
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6999996444 44677778899999999999999999873
No 91
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.44 E-value=0.22 Score=34.79 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEE-EcCC
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV-CSAF 103 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~-~~~~ 103 (114)
..++++++.+.|+|||.+++ +. . . ...+++.+++++.||+.+++. ...+
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~-e~----g-~------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~ 266 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLL-EI----G-Y------------------------DQGEAVRALLAAAGFADVETRKDLAG 266 (275)
T ss_pred HHHHHHHHHHhcccCCEEEE-EE----C-c------------------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence 46788999999999999987 21 0 0 113458889999999877664 3445
Q ss_pred ceeEEEEE
Q 033647 104 NTYIMEFL 111 (114)
Q Consensus 104 ~~~~ie~~ 111 (114)
.-.++.++
T Consensus 267 ~~r~~~~~ 274 (275)
T PRK09328 267 RDRVVLGR 274 (275)
T ss_pred CceEEEEE
Confidence 55555554
No 92
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.35 E-value=0.039 Score=40.19 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=34.3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHH-hCCCCcEEEEE-eee
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYE-ALPEDGKVIVV-DCI 48 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~-aL~pgg~l~i~-e~~ 48 (114)
-++++.+.+.+++++++..+|+++++ .|.||+.++|- |..
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 56677789999999999999999999 99999888773 544
No 93
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.32 E-value=0.025 Score=34.45 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=26.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|++++....+ ...++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 69998866443 3458999999999999999873
No 94
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.07 E-value=0.028 Score=41.15 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=32.3
Q ss_pred ceEEEecccccc-CC-hHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHN-WS-EEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~-~~-d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.|+|=+...+|. +. .+.+..+|+++.+.|+|||.++..=
T Consensus 146 FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 146 FDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 499999999998 44 4558889999999999999998753
No 95
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.88 E-value=0.087 Score=36.29 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=50.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCC-CCchhhhhhhhcchhccccccCceecCHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLP-DTSLASKQVIQLDCFMLAYTIGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.|+|+=+..|+.++.+...+-.+++.+.|+|||+++++-...+... .+|+. .-+.+|+.+
T Consensus 117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf-------------------~v~~~ev~~ 177 (218)
T PF05724_consen 117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF-------------------SVTEEEVRE 177 (218)
T ss_dssp EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHHHH
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC-------------------CCCHHHHHH
Confidence 5999999999999999999999999999999999555443332221 12221 124678888
Q ss_pred HHHHcCCceeEEE
Q 033647 87 LAKAAGFQGFKVV 99 (114)
Q Consensus 87 ll~~aGf~~~~~~ 99 (114)
++. .+|++..+.
T Consensus 178 l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 178 LFG-PGFEIEELE 189 (218)
T ss_dssp HHT-TTEEEEEEE
T ss_pred Hhc-CCcEEEEEe
Confidence 887 777766554
No 96
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.73 E-value=0.01 Score=36.67 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=44.2
Q ss_pred ceEEEecccc---c-cCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHH
Q 033647 8 AEAIFMKWIC---H-NWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQD 83 (114)
Q Consensus 8 ~D~vl~~~vl---h-~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (114)
+|+|+...|. | +|.|+-..++++++++.|+|||.+++ | .++..++. .... ..-.+. .+...-....++
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-E----pQ~w~sY~-~~~~-~~~~~~-~n~~~i~lrP~~ 73 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-E----PQPWKSYK-KAKR-LSEEIR-ENYKSIKLRPDQ 73 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------HHHHH-TTTT-S-HHHH-HHHHH----GGG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-e----CCCcHHHH-HHhh-hhHHHH-hHHhceEEChHH
Confidence 5777776642 3 36788899999999999999999976 3 22221111 0000 000000 011222234557
Q ss_pred HHHHHHH--cCCceeEEEEcC
Q 033647 84 FKTLAKA--AGFQGFKVVCSA 102 (114)
Q Consensus 84 ~~~ll~~--aGf~~~~~~~~~ 102 (114)
+..+|.+ .||+..+.....
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 599988765553
No 97
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.49 E-value=0.34 Score=34.56 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=53.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+-...+. +-.....-+..|.+.|+|||..|-+-+..-..... + . ....+-+.+.+|+.++
T Consensus 166 ~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~----------~---~-~~~~sveLs~eEi~~l 229 (270)
T PF07942_consen 166 FDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM----------S---I-PNEMSVELSLEEIKEL 229 (270)
T ss_pred ccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccCCCC----------C---C-CCCcccCCCHHHHHHH
Confidence 49988887774 23447888999999999999776655544332110 0 0 0122356789999999
Q ss_pred HHHcCCceeEEEE
Q 033647 88 AKAAGFQGFKVVC 100 (114)
Q Consensus 88 l~~aGf~~~~~~~ 100 (114)
.+..||+..+-..
T Consensus 230 ~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 230 IEKLGFEIEKEES 242 (270)
T ss_pred HHHCCCEEEEEEE
Confidence 9999999876544
No 98
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.48 E-value=0.35 Score=34.20 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhh--hh--cchhccccccCceecCHHH
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSL-ASKQV--IQ--LDCFMLAYTIGGREMTEQD 83 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~~~g~~rt~~e 83 (114)
-++++.-++..++.++..++|+.+.+...||+.+++ |.+.+-...... ..+.. .. .....+ ..+ .+.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~ 233 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRAGMRAPVYHAARGVDGSGL---VFG--IDRAD 233 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHHHHHHHHHHhhhccccccc---ccC--CChhh
Confidence 467777799999999999999999998888888764 776652111100 00000 00 111111 112 36789
Q ss_pred HHHHHHHcCCceeEE
Q 033647 84 FKTLAKAAGFQGFKV 98 (114)
Q Consensus 84 ~~~ll~~aGf~~~~~ 98 (114)
+.++|++.||+....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998755
No 99
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.42 E-value=0.2 Score=34.86 Aligned_cols=100 Identities=10% Similarity=0.079 Sum_probs=60.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch---hhhhhh--hcchhcccc-ccCceecC
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSL---ASKQVI--QLDCFMLAY-TIGGREMT 80 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~---~~~~~~--~~~~~~~~~-~~~g~~rt 80 (114)
..|+++...+||=++|. .++|.+....|.|||.|.+. +|++...+. .+.... -+...+... ...+..-+
T Consensus 92 ~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s 166 (257)
T COG4106 92 PTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPS 166 (257)
T ss_pred ccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCC
Confidence 36999999999988885 79999999999999999884 333332221 000000 011111100 01233448
Q ss_pred HHHHHHHHHHcCCceeEEEEc------CCceeEEEEEe
Q 033647 81 EQDFKTLAKAAGFQGFKVVCS------AFNTYIMEFLK 112 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~------~~~~~~ie~~~ 112 (114)
.+.+-++|...+ ..++++++ .+...|||=.|
T Consensus 167 ~a~Yy~lLa~~~-~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 167 PAAYYELLAPLA-CRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHHHhCccc-ceeeeeeeeccccCCCccchhhhee
Confidence 889999997665 44566654 35556665433
No 100
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.12 E-value=0.1 Score=34.25 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=32.0
Q ss_pred CCCCCc--ceEEEeccccccCCh---HHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 2 FVSIPK--AEAIFMKWICHNWSE---EACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 2 f~~~p~--~D~vl~~~vlh~~~d---~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
++.++. +|+|++.=-+|.-.+ +-..++++++.+.|+|||.++++-
T Consensus 91 ~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 91 FEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 455552 699999877765554 346889999999999999997744
No 101
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=93.84 E-value=0.2 Score=34.16 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=28.9
Q ss_pred ceEEEeccccccCChH---H------HHHHHHHHHHhCCCCcEEEEEee
Q 033647 8 AEAIFMKWICHNWSEE---A------CVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~---~------~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+|+|+..-..|...+. . ...+|+.+++.|+|||.+++...
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 6999986555433321 1 24689999999999999999653
No 102
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.74 E-value=0.085 Score=35.19 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=25.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.+|+|++.. +|++ ..+++.+++.|+|||++++.
T Consensus 109 ~fD~I~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 109 QFDVITSRA-LASL-----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CccEEEehh-hhCH-----HHHHHHHHHhcCCCCEEEEE
Confidence 369988765 5433 35778889999999999875
No 103
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=93.30 E-value=0.17 Score=33.98 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=26.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.+|+|++..+ . ....+++++++.|+|||++++++
T Consensus 112 ~fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 112 KFDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 3799998653 1 24678999999999999999874
No 104
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=92.98 E-value=0.11 Score=37.29 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=34.0
Q ss_pred ceEEEeccccccCChHH-HHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNWSEEA-CVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~-~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.|..+...++|||+... -.++++++.+.++|||..+|.=
T Consensus 104 ~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 104 FDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 59999999999999765 6788999999999999977653
No 105
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=92.76 E-value=0.24 Score=35.19 Aligned_cols=47 Identities=9% Similarity=0.268 Sum_probs=37.3
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 4 SIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 4 ~~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
+++..|+|+++|+|-.+++++..++++++-+.+.+ .|+|+|.-.+..
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 34446999999999999997788888888777665 899988755543
No 106
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=92.75 E-value=0.17 Score=34.21 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=27.1
Q ss_pred ceEEEeccccccC------ChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNW------SEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~------~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.|++++....+.. .......+|+++.+.|+|||.+++..
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5888876543211 11124678999999999999998853
No 107
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.55 E-value=0.2 Score=37.41 Aligned_cols=41 Identities=5% Similarity=-0.070 Sum_probs=35.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
.|.+.+..+.--+++++..++.+.+.++++|||+++.=...
T Consensus 296 ~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 296 FDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred eeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 49999999987778888999999999999999999874433
No 108
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.70 E-value=1.1 Score=32.47 Aligned_cols=89 Identities=13% Similarity=-0.009 Sum_probs=54.7
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc--h-hhhhhhhcchhccccccCceecCHHHHH
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS--L-ASKQVIQLDCFMLAYTIGGREMTEQDFK 85 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
=+.++..++-.++.++..++|.+|.....||++++..-...+...... . ........+........ ......++.
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~e~~ 249 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVY--FGDDPAEIE 249 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccccee--ccCCHHHHH
Confidence 367788899999999999999999999999999877443111111110 0 00000001111110011 124588999
Q ss_pred HHHHHcCCceeEEE
Q 033647 86 TLAKAAGFQGFKVV 99 (114)
Q Consensus 86 ~ll~~aGf~~~~~~ 99 (114)
.|+.+.||......
T Consensus 250 ~~l~~~g~~~~~~~ 263 (297)
T COG3315 250 TWLAERGWRSTLNR 263 (297)
T ss_pred HHHHhcCEEEEecC
Confidence 99999999987663
No 109
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.53 E-value=0.39 Score=32.19 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=25.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
.+|++++.. ..++...+++.+.+.|+|||++++
T Consensus 111 ~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 368888743 223457899999999999999976
No 110
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.51 E-value=0.17 Score=37.69 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=33.9
Q ss_pred CCCcceEEEeccccccCChHH----HHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 4 SIPKAEAIFMKWICHNWSEEA----CVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 4 ~~p~~D~vl~~~vlh~~~d~~----~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
++|.+|.|-+..++|.+-.+. ....+++.-..+.|||.++|+|.-.+
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 466677777777666644333 33478888899999999999997444
No 111
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.84 E-value=0.31 Score=32.96 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=24.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++...++++++ ++.+.|+|||++++.
T Consensus 143 fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 143 FDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred ccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence 699999988876653 466789999999874
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.28 E-value=0.37 Score=31.99 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=26.6
Q ss_pred ceEEEeccccc---cCCh------HHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICH---NWSE------EACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh---~~~d------~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|+|+.....| .|+- +...++++++++.|+|||++++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 69999743221 1221 22468899999999999999884
No 113
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=90.14 E-value=1.9 Score=30.44 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEcC--
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSA-- 102 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-- 102 (114)
-..+++.+.+.|+|||++.++ .+..+ ..||.+++++.+|...++..+.
T Consensus 149 le~~i~~a~~~lk~~G~l~~V---~r~er---------------------------l~ei~~~l~~~~~~~k~i~~V~p~ 198 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFV---HRPER---------------------------LAEIIELLKSYNLEPKRIQFVYPK 198 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEE---ecHHH---------------------------HHHHHHHHHhcCCCceEEEEecCC
Confidence 467889999999999999774 32211 3477888888898887776653
Q ss_pred ----CceeEEEEEeC
Q 033647 103 ----FNTYIMEFLKN 113 (114)
Q Consensus 103 ----~~~~~ie~~~~ 113 (114)
....++|+.|+
T Consensus 199 ~~k~A~~vLv~~~k~ 213 (248)
T COG4123 199 IGKAANRVLVEAIKG 213 (248)
T ss_pred CCCcceEEEEEEecC
Confidence 35778888876
No 114
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.13 E-value=0.56 Score=33.15 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=27.5
Q ss_pred ceEEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEA--CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~--~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++-..-+.-+... ....++++++.|+|||.+++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 69998866533222222 367889999999999999885
No 115
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.05 E-value=2.3 Score=30.06 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=60.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|....|+-.+.+ ...++.-+...|+|||.+.+.---.++... |-+.. ..--..++.-++++
T Consensus 189 ~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~----------f~l~p----s~RyAH~~~YVr~~ 252 (287)
T COG4976 189 FDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGG----------FVLGP----SQRYAHSESYVRAL 252 (287)
T ss_pred ccchhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCC----------eecch----hhhhccchHHHHHH
Confidence 699999999888776 458888899999999998775333332211 11111 11113467788999
Q ss_pred HHHcCCceeEEEEcC-----C---ceeEEEEEeCC
Q 033647 88 AKAAGFQGFKVVCSA-----F---NTYIMEFLKNP 114 (114)
Q Consensus 88 l~~aGf~~~~~~~~~-----~---~~~~ie~~~~~ 114 (114)
++..||+++++.++. + .-.++.++|++
T Consensus 253 l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 253 LAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred HHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 999999999988763 1 13356666653
No 116
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=90.04 E-value=0.72 Score=31.00 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=29.1
Q ss_pred eEEEeccccccCCh------H----HHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 9 EAIFMKWICHNWSE------E----ACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 9 D~vl~~~vlh~~~d------~----~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
|+|++.+.|||++- + ...+++.++.+.|+|+. ++|.-...|
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~a-llIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIEC-LIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCcc-EEEEecCCC
Confidence 99999999999875 2 24566677777777774 445555554
No 117
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.95 E-value=0.81 Score=32.63 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=34.1
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE-eeec
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV-DCIL 49 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~-e~~~ 49 (114)
=.+++...|-+++.++|..+|.+++.+|+||-.+++- |...
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 4677888999999999999999999999999776663 5433
No 118
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.57 E-value=0.33 Score=37.41 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCCCCc-ceEEEeccccccCChH-HHHHHHHHHHHhCCCCcEEEEEe
Q 033647 2 FVSIPK-AEAIFMKWICHNWSEE-ACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 2 f~~~p~-~D~vl~~~vlh~~~d~-~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
|...|. +|++-..+++..+.+. +...+|-++-+.|+|||.++|=|
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 455676 7999999999887753 35788999999999999998855
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=89.44 E-value=0.51 Score=33.70 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=27.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+|+|+..... +....+++++++.|+|||.+++...
T Consensus 226 fDlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 226 ADVIVANILA-----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ceEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 6999875432 2346789999999999999988654
No 120
>PRK14967 putative methyltransferase; Provisional
Probab=89.30 E-value=1.2 Score=30.42 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
...+++++.+.|+|||+++++..-.
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4568899999999999999865443
No 121
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.10 E-value=1.1 Score=30.28 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=28.1
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 4 SIPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 4 ~~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.+|+.|++++.--- + ...+|+.+.+.|+|||++++.
T Consensus 99 ~~~~~daiFIGGg~---~---i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 99 DLPSPDAIFIGGGG---N---IEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCCCCCEEEECCCC---C---HHHHHHHHHHHcCcCCeEEEE
Confidence 45556888887762 2 358999999999999999873
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=88.79 E-value=1.1 Score=33.80 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
.++|.++.+.|+|||+++...+.....
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 689999999999999999988776544
No 123
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.58 E-value=0.62 Score=31.74 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=22.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++....++.+ +.+.+.|+|||++++.
T Consensus 146 fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 146 YDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 69999987765543 3456689999999885
No 124
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=88.58 E-value=0.57 Score=28.17 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=27.5
Q ss_pred ceEEEeccccccCCh------HHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSE------EACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d------~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|+..--.+.... .....+++++.+.|+|||.++++
T Consensus 71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 699998776654321 12468899999999999999875
No 125
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=88.54 E-value=4.6 Score=29.83 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+-.+.+. +......-|..|.+.|+|||..+-+-+.+-...... +. ....+-+.+.+++..+
T Consensus 260 ~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~----~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 260 YDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GV----ENEMSIELSLEDLKRV 324 (369)
T ss_pred cceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CC----cccccccccHHHHHHH
Confidence 48888887764 334467888999999999999988776554332211 10 1223567889999999
Q ss_pred HHHcCCceeEEEEc
Q 033647 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
.+.-||++.+-..+
T Consensus 325 ~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 325 ASHRGFEVEKERGI 338 (369)
T ss_pred HHhcCcEEEEeeee
Confidence 99999999876644
No 126
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.34 E-value=5.9 Score=26.96 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=56.6
Q ss_pred CCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh---hh--hhhhcchhccccccCce
Q 033647 5 IPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLA---SK--QVIQLDCFMLAYTIGGR 77 (114)
Q Consensus 5 ~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~g~ 77 (114)
+|. .|.|+++.+|.+.... .++|+++.+. |.+.+|.=+...--+..-.. .+ .+..+..... .+.|=.
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY-dTPNih 144 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY-DTPNIH 144 (193)
T ss_pred CCCCCccEEehHhHHHhHhHH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc-CCCCcc
Confidence 455 4999999999988764 5778876554 66666643221110000000 00 0011111112 245566
Q ss_pred ecCHHHHHHHHHHcCCceeEEEEcCCc
Q 033647 78 EMTEQDFKTLAKAAGFQGFKVVCSAFN 104 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~~~~ 104 (114)
.-|.++++++.++.|+++.+...+.+.
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 679999999999999999998887543
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=88.29 E-value=1.4 Score=31.94 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.4
Q ss_pred CCCCCc-ceEEEeccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 2 FVSIPK-AEAIFMKWICHNW---SEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 2 f~~~p~-~D~vl~~~vlh~~---~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
|+++.. .|+|++.==+|.= .+.-+.+++++..+.|++||.|.|+=+
T Consensus 218 ~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 YEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 445555 7999988888853 333466999999999999999998654
No 128
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.24 E-value=0.77 Score=32.90 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=24.6
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
..+|+|++.... ..+.++..++|.++.+.|+||+++++
T Consensus 191 ~~~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 191 KEYDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp ---SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred ccCCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 346888888765 34556689999999999999998876
No 129
>PRK00811 spermidine synthase; Provisional
Probab=87.49 E-value=1.4 Score=31.49 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=25.8
Q ss_pred ceEEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEE
Q 033647 8 AEAIFMKWICHNWSEEA--CVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~--~~~lL~~~~~aL~pgg~l~i 44 (114)
+|+|++-..-+.-+... ...+++.+++.|+|||.+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 69998754332222221 36788999999999999876
No 130
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=86.73 E-value=1.4 Score=29.71 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+|++++...++++ .+++.+.|+|||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 6999998766544 345678999999998853
No 131
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=86.55 E-value=4.9 Score=28.54 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
...+-+++++.|+|||+++= + .+++... .+-.| -.+.+.+-|+++||..++....
T Consensus 224 seefY~El~RiLkrgGrlFH--Y-vG~Pg~r------yrG~d-------------~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 224 SEEFYRELYRILKRGGRLFH--Y-VGNPGKR------YRGLD-------------LPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHHHHHHHcCcCCcEEE--E-eCCCCcc------cccCC-------------hhHHHHHHHHhcCceeeeeehh
Confidence 35677889999999999842 2 2322211 01112 1457789999999998776654
No 132
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=86.42 E-value=2 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=28.0
Q ss_pred ccCceecCHHHHHHHHHHcCCceeEEEEcCC-ceeE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFKVVCSAF-NTYI 107 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~ 107 (114)
+..+..++.+++..++++|||++.+.+.-.. .+++
T Consensus 90 ~e~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 90 TENSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EEEeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 4456788999999999999999998887643 3544
No 133
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=86.41 E-value=0.82 Score=32.23 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=22.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.|+|+.... ...++++++.|+|||+++++.
T Consensus 152 fD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 152 LDAIIRIYA---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred eeEEEEecC---------CCCHHHHHhhccCCCEEEEEe
Confidence 598886432 124678899999999999864
No 134
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=85.97 E-value=0.79 Score=32.35 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCc-EEEEEeee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDG-KVIVVDCI 48 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg-~l~i~e~~ 48 (114)
.|+|....++|-+.- .++.+.+++.|++.| .+.+.-..
T Consensus 101 VDlI~~Aqa~HWFdl---e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDL---ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhch---HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 599999999986655 589999999999866 55554433
No 135
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=85.80 E-value=5.8 Score=23.97 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=46.7
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCce-------ecCHHHHHHHH
Q 033647 16 ICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGR-------EMTEQDFKTLA 88 (114)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~rt~~e~~~ll 88 (114)
+|=|.+.++..++|+++.. +.. |++++ .+.|.++- . .....+.-+ ..+. ...++++.+.+
T Consensus 4 vLIHYp~~d~~~~l~~La~-~t~-~~~if--TfAP~T~~---L---~~m~~iG~l---FP~~dRsp~i~~~~e~~l~~~l 70 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLAS-RTR-GSLIF--TFAPRTPL---L---ALMHAIGKL---FPRPDRSPRIYPHREEDLRRAL 70 (97)
T ss_pred eEeccCHHHHHHHHHHHHH-hcc-CcEEE--EECCCCHH---H---HHHHHHhcc---CCCCCCCCcEEEeCHHHHHHHH
Confidence 3446888999999999876 333 44443 35555531 1 111111111 1122 23678999999
Q ss_pred HHcCCceeEEEEcCCcee
Q 033647 89 KAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 89 ~~aGf~~~~~~~~~~~~~ 106 (114)
+++||+..+...+..+++
T Consensus 71 ~~~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 71 AAAGWRIGRTERISSGFY 88 (97)
T ss_pred HhCCCeeeecccccCcCh
Confidence 999999988877765443
No 136
>PRK04457 spermidine synthase; Provisional
Probab=85.77 E-value=1.3 Score=31.22 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=26.3
Q ss_pred ceEEEecccccc--CChHH-HHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHN--WSEEA-CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~--~~d~~-~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++-. ++. .+... ...+++++++.|+|||.+++.
T Consensus 137 yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 137 TDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 69998743 322 22111 368999999999999999884
No 137
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=85.52 E-value=2.4 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=30.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
.|++ .....+++.+ ....++++.+.++|+|.+++.+.....
T Consensus 120 ~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 120 FDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 5888 4444444444 678999999999999999998776554
No 138
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=84.88 E-value=1.4 Score=32.09 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
+..++|+.+.+.|+|||+++|+-+..=++
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 46788999999999999999988765444
No 139
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=84.46 E-value=1.5 Score=29.82 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=22.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|++++....++. .+.+.+.|+|||++++.
T Consensus 147 fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 6999987665444 34567789999999874
No 140
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.99 E-value=2 Score=31.27 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
+..+.|..+.+.|+||||++|+-+.+=++
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 47788999999999999999998765444
No 141
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=83.77 E-value=14 Score=26.98 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=44.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+. |+|- +-..++...+.+.++|||++++.-.+.+ . .+.+.+-
T Consensus 230 ~DvIVA-NILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~-q----------------------------~~~V~~a 275 (300)
T COG2264 230 FDVIVA-NILA----EVLVELAPDIKRLLKPGGRLILSGILED-Q----------------------------AESVAEA 275 (300)
T ss_pred ccEEEe-hhhH----HHHHHHHHHHHHHcCCCceEEEEeehHh-H----------------------------HHHHHHH
Confidence 576654 5552 2246888999999999999988542221 1 3455667
Q ss_pred HHHcCCceeEEEEcCCceeE
Q 033647 88 AKAAGFQGFKVVCSAFNTYI 107 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~~ 107 (114)
++++||.++++..-....++
T Consensus 276 ~~~~gf~v~~~~~~~eW~~i 295 (300)
T COG2264 276 YEQAGFEVVEVLEREEWVAI 295 (300)
T ss_pred HHhCCCeEeEEEecCCEEEE
Confidence 77789998888776554444
No 142
>PRK07402 precorrin-6B methylase; Provisional
Probab=83.36 E-value=1.8 Score=28.84 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
....+++++.+.|+|||++++...
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEee
Confidence 357899999999999999988754
No 143
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=83.24 E-value=1.6 Score=29.20 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEe
Q 033647 26 VKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e 46 (114)
..+++++.+.|+|||.+++.-
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 478999999999999997743
No 144
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=83.21 E-value=2.2 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=26.1
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCC
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLP 53 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~ 53 (114)
.+||+|++.+.+ |+++-..++ .+....|++|.++|-...+.+...
T Consensus 121 s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 121 SDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRRR 165 (205)
T ss_dssp HC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT-
T ss_pred cCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCCc
Confidence 458999999975 666655555 666678999999987776666543
No 145
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=82.92 E-value=1.9 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
+...+|.++.+.|+|||+++|+-+..=++
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 46788999999999999999988765544
No 146
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=82.38 E-value=9.9 Score=25.39 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
.+.+.+++..|+|||.+++.=++-.
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCC
Confidence 4667888999999999998655543
No 147
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=82.35 E-value=3.5 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=26.3
Q ss_pred ceEEEecccc------c-cCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWIC------H-NWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vl------h-~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|++++.--+ + +...+-..++|+++++.|+|||++++.
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 5888874211 1 112233578999999999999999874
No 148
>PLN02366 spermidine synthase
Probab=81.92 E-value=3.5 Score=29.95 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=25.6
Q ss_pred ceEEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEA--CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~--~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++-..-+.-+... ...+++.+++.|+|||.+++.
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 69998743322212111 357899999999999998653
No 149
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=81.14 E-value=7.5 Score=28.14 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=44.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+. |++- +-...+...+.+.|+|||.+++.-....+ .+++.+.
T Consensus 226 ~dlvvA-NI~~----~vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a 271 (295)
T PF06325_consen 226 FDLVVA-NILA----DVLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEA 271 (295)
T ss_dssp EEEEEE-ES-H----HHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHH
T ss_pred CCEEEE-CCCH----HHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHH
Confidence 587774 4442 33567888899999999999885433221 3455666
Q ss_pred HHHcCCceeEEEEcCCceeEEEEEeC
Q 033647 88 AKAAGFQGFKVVCSAFNTYIMEFLKN 113 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~~ie~~~~ 113 (114)
+++ ||+..+...... -..+.++||
T Consensus 272 ~~~-g~~~~~~~~~~~-W~~l~~~Kk 295 (295)
T PF06325_consen 272 YKQ-GFELVEEREEGE-WVALVFKKK 295 (295)
T ss_dssp HHT-TEEEEEEEEETT-EEEEEEEE-
T ss_pred HHC-CCEEEEEEEECC-EEEEEEEeC
Confidence 665 999888776644 344445543
No 150
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=80.41 E-value=7.6 Score=26.18 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=37.6
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
|..|.++..--+-.+|-....++|+++...|++||.++-+.+-
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3369999999888899999999999999999999999887765
No 151
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=80.36 E-value=2 Score=29.93 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=47.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCC-CcEEEEEeeecCCCC------CCchhhhhhhhcchhccccccCceecC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPE-DGKVIVVDCILPVLP------DTSLASKQVIQLDCFMLAYTIGGREMT 80 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~rt 80 (114)
.|+|...|.|..--+ .-++|+.+..+|.| .|++++. -++|-.+ .+.. ...-+.+ ..+|+.+.
T Consensus 170 ~dli~clNlLDRc~~--p~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~------~rPdn~L--e~~Gr~~e 238 (288)
T KOG3987|consen 170 LDLILCLNLLDRCFD--PFKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLP------LRPDNLL--ENNGRSFE 238 (288)
T ss_pred eehHHHHHHHHhhcC--hHHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCc------CCchHHH--HhcCccHH
Confidence 488888888865544 47999999999999 7887663 3433221 1100 0000111 24565442
Q ss_pred H--HHHHHHHHHcCCcee
Q 033647 81 E--QDFKTLAKAAGFQGF 96 (114)
Q Consensus 81 ~--~e~~~ll~~aGf~~~ 96 (114)
+ ..+-++|+.|||.+.
T Consensus 239 e~v~~~~e~lr~~g~~ve 256 (288)
T KOG3987|consen 239 EEVARFMELLRNCGYRVE 256 (288)
T ss_pred HHHHHHHHHHHhcCchhh
Confidence 2 356789999999864
No 152
>PHA03411 putative methyltransferase; Provisional
Probab=79.56 E-value=11 Score=27.11 Aligned_cols=65 Identities=8% Similarity=0.032 Sum_probs=39.4
Q ss_pred ceEEEeccccccCChHHH------------------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhc
Q 033647 8 AEAIFMKWICHNWSEEAC------------------VKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFM 69 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~------------------~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 69 (114)
.|+|++.--+++.+.++. .+.++.+...|+|+|.+.++ ....+ ++
T Consensus 127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~y---- 189 (279)
T PHA03411 127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------YY---- 189 (279)
T ss_pred CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------cc----
Confidence 699999877776655432 23445556667787766554 11111 01
Q ss_pred cccccCceecCHHHHHHHHHHcCCce
Q 033647 70 LAYTIGGREMTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 70 ~~~~~~g~~rt~~e~~~ll~~aGf~~ 95 (114)
...-+.+|++++|+++||..
T Consensus 190 ------~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 190 ------DGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ------cccCCHHHHHHHHHhcCcEe
Confidence 11234788888999888864
No 153
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=79.38 E-value=2.2 Score=31.80 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
.|.+..-.+..+.++- ..+++++++.++|||..++.|.+.-..
T Consensus 179 fd~v~~ld~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred cCcEEEEeecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 4888888888888884 699999999999999999988775443
No 154
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=79.06 E-value=0.74 Score=35.59 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=36.0
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 4 SIPK--AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
|+|. .|++-.+.++..|...+ ..+|-.+-+.|+|||.++..-.-
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 4555 39999999999999876 46788999999999999875543
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=79.01 E-value=4.6 Score=30.28 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=25.1
Q ss_pred ceEEEeccccc---cCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICH---NWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh---~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++-..-. ..+.--...+++.|++.|+|||.+++.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 68888763110 001111367899999999999998775
No 156
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=78.76 E-value=6.6 Score=27.22 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=26.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
+|++++ +-..+.-...+..+.+.|+|||.+++ |.+.
T Consensus 145 fD~Vfi-----Da~k~~y~~~~~~~~~ll~~GG~ii~-dn~l 180 (234)
T PLN02781 145 FDFAFV-----DADKPNYVHFHEQLLKLVKVGGIIAF-DNTL 180 (234)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHHhcCCCeEEEE-EcCC
Confidence 687766 33345567889999999999997655 6554
No 157
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=77.68 E-value=1.7 Score=31.71 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 23 EACVKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 23 ~~~~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
++...+|+++.+.|+|||+++|+-+..-+
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLE 246 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLE 246 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchh
Confidence 35678899999999999999998765433
No 158
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=77.28 E-value=4.4 Score=31.28 Aligned_cols=43 Identities=2% Similarity=-0.045 Sum_probs=31.9
Q ss_pred ceEEEeccccccCChHH-HHHHH-HHHHHhCCCCcEEEEEeeecC
Q 033647 8 AEAIFMKWICHNWSEEA-CVKIL-KNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~-~~~lL-~~~~~aL~pgg~l~i~e~~~~ 50 (114)
+|+++.++++|++.... ...+. ...+++.++|++++|+|.-..
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 69999999999877543 33334 445577899999999997443
No 159
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=76.51 E-value=5.3 Score=26.48 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-..+++-+++.|.|||++.| |++.+.. . ...+. .|.--....+...|.+|||+..+-+--
T Consensus 65 E~~l~~~~~~~l~pg~~lfV-eY~~D~e---T-------~~~L~------~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 65 EDELYKLFSRYLEPGGRLFV-EYVEDRE---T-------RRQLQ------RGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp HHHHHHHHHTT----SEEEE-E-TT-HH---H-------HHHHH------TT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred HHHHHHHHHHHhhhcCeEEE-EEecCHH---H-------HHHHH------cCCCcccchhHHHHHhCCcEEEeeeec
Confidence 46788889999999999987 7766532 0 11111 111112335677788899999987654
No 160
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=75.41 E-value=7.7 Score=25.66 Aligned_cols=58 Identities=9% Similarity=0.183 Sum_probs=37.0
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCcee
Q 033647 17 CHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 17 lh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
-.||......++.+++.+.++||+.+++++. +.... +. .....+...|++.||+.+
T Consensus 130 ~~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd~---~~~~~-----------------t~----~~l~~~i~~l~~~Gy~~v 185 (191)
T TIGR02764 130 SRDWKNPGVESIVDRVVKNTKPGDIILLHAS---DSAKQ-----------------TV----KALPTIIKKLKEKGYEFV 185 (191)
T ss_pred CCccCCCCHHHHHHHHHhcCCCCCEEEEeCC---CCcHh-----------------HH----HHHHHHHHHHHHCCCEEE
Confidence 3456554566788888888999888877761 11100 00 114567888888998877
Q ss_pred EE
Q 033647 97 KV 98 (114)
Q Consensus 97 ~~ 98 (114)
.+
T Consensus 186 tl 187 (191)
T TIGR02764 186 TI 187 (191)
T ss_pred EH
Confidence 54
No 161
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=73.66 E-value=4.1 Score=30.87 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
.++|+++.+.|+|||+++...+....
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 68899999999999999987766543
No 162
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=73.35 E-value=15 Score=25.64 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEeee--cCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEE
Q 033647 22 EEACVKILKNCYEALPEDGKVIVVDCI--LPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 22 d~~~~~lL~~~~~aL~pgg~l~i~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
.+|+.-+..|+..-|++||.++|.=-. .+.. .++. .. -++-.+.|++.||+..+..
T Consensus 154 p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t--~~p~----~v----------------f~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 154 PDQARIAALNARHFLKPGGHLIISIKARSIDST--ADPE----EV----------------FAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS--SSHH----HH----------------HHHHHHHHHCTTCEEEEEE
T ss_pred hHHHHHHHHHHHhhccCCcEEEEEEecCcccCc--CCHH----HH----------------HHHHHHHHHHcCCChheEe
Confidence 356778889999999999998875211 1111 1100 00 1222556677899999988
Q ss_pred EcCC---ceeEEEEEeC
Q 033647 100 CSAF---NTYIMEFLKN 113 (114)
Q Consensus 100 ~~~~---~~~~ie~~~~ 113 (114)
.+.+ ++.++.++.+
T Consensus 212 ~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 212 TLEPYERDHAMVVGRYR 228 (229)
T ss_dssp E-TTTSTTEEEEEEEE-
T ss_pred ccCCCCCCcEEEEEEec
Confidence 8865 5778877754
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=73.17 E-value=7.3 Score=25.61 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
.|+|+.+-++.+ ++....+++-+.+.|+|+|.+++.-...
T Consensus 120 ~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 120 FDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp BSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 699999999974 5667889999999999998877766544
No 164
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=72.98 E-value=8.2 Score=29.13 Aligned_cols=41 Identities=20% Similarity=0.468 Sum_probs=27.5
Q ss_pred CCCc--ceEEEeccccccCChHH-----HHHHHHHHHHhCCCCcEEEEE
Q 033647 4 SIPK--AEAIFMKWICHNWSEEA-----CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 4 ~~p~--~D~vl~~~vlh~~~d~~-----~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.+|. .|.|++..-. -|+... ...+|+.+++.|+|||.+.+.
T Consensus 187 ~~~~~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 187 LLPSNSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred hCCCCceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4454 3888765332 243221 257899999999999999874
No 165
>PRK03612 spermidine synthase; Provisional
Probab=72.59 E-value=7.5 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=25.3
Q ss_pred ceEEEeccccccCChHH---HHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEA---CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~---~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|++...-+..+... ..++++++++.|+|||.+++.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 69888764322211110 246889999999999998774
No 166
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.72 E-value=9.5 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=25.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+|.|+.....-..|+ .+++ -|+|||++++..-
T Consensus 139 yD~I~Vtaaa~~vP~----~Ll~----QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE----ALLD----QLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH----HHHH----hcccCCEEEEEEc
Confidence 599999988877766 4444 6999999999664
No 167
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=71.20 E-value=9.4 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCceeEEEEcCCceeEEEEEeC
Q 033647 82 QDFKTLAKAAGFQGFKVVCSAFNTYIMEFLKN 113 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~~~ 113 (114)
..++.-|.++||.+.+....++...++.|.++
T Consensus 93 ~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 93 GAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp HHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred HHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 36789999999999888877777777777664
No 168
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=71.13 E-value=46 Score=25.96 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCCcEEEE
Q 033647 25 CVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i 44 (114)
..++++++.+.|+|||.+++
T Consensus 248 ~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 45678899999999999865
No 169
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=70.62 E-value=7 Score=29.56 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
.++|+++.+.|+|||++++..+....
T Consensus 352 ~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 352 SEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 57899999999999999988765443
No 170
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=70.51 E-value=16 Score=24.28 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-.+++.-+++.|.|||.+.+ |++.+..- ...+ ..|+.-....+...|.++||+..+-+-.
T Consensus 72 E~~l~~~l~~~lspg~~lfV-eYv~DrET----------~~~l------qkG~~p~atrLGfeL~k~GftwfkdWY~ 131 (192)
T COG4353 72 EVKLYKVLYNFLSPGGKLFV-EYVRDRET----------RYRL------QKGKPPVATRLGFELLKAGFTWFKDWYF 131 (192)
T ss_pred HHHHHHHHHHhcCCCCceEE-EEEechhH----------HHHH------HcCCCCccchhhHHHHhCcceeeeeeec
Confidence 46778888999999999977 88876541 1111 1222222334455666799998876644
No 171
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=69.50 E-value=49 Score=25.39 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEE-cCCc
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVC-SAFN 104 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~ 104 (114)
.++++++.+.|+|||.+++ |.-. + ..+++.+++++.||..+++.. ..+.
T Consensus 361 r~Ii~~a~~~LkpgG~lil-EiG~--~---------------------------Q~e~V~~ll~~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 361 RTLAQGAPDRLAEGGFLLL-EHGF--D---------------------------QGAAVRGVLAENGFSGVETLPDLAGL 410 (423)
T ss_pred HHHHHHHHHhcCCCcEEEE-EECc--c---------------------------HHHHHHHHHHHCCCcEEEEEEcCCCC
Confidence 4677777788888888654 3211 0 134667888889998766554 4566
Q ss_pred eeEEEEEe
Q 033647 105 TYIMEFLK 112 (114)
Q Consensus 105 ~~~ie~~~ 112 (114)
-.++.+++
T Consensus 411 dR~v~~~~ 418 (423)
T PRK14966 411 DRVTLGKY 418 (423)
T ss_pred cEEEEEEE
Confidence 66666654
No 172
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=68.94 E-value=7.2 Score=27.85 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCcEEEE
Q 033647 25 CVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i 44 (114)
..++++++.+.|+|||++++
T Consensus 230 ~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 47889999999999999865
No 173
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=68.54 E-value=7.4 Score=28.19 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCcEEEE
Q 033647 25 CVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i 44 (114)
...+++++.+.|+|||++++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 47889999999999999876
No 174
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=68.53 E-value=7.8 Score=27.54 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.3
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 17 CHNWSEEACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 17 lh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
+=|.+|. -..++++.++|+|||.+++.-+..+
T Consensus 168 ~LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 168 FLDLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EEcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 3477774 6999999999999999988654443
No 175
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=68.45 E-value=21 Score=26.84 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=32.8
Q ss_pred CCCCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 3 VSIPK-AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 3 ~~~p~-~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
+++|. +|+|++..-= +-+.....|+++.+.|+||+.+++.+...+
T Consensus 101 ~~~~~~~d~vl~~~PK---~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 101 ADYPQQPGVVLIKVPK---TLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred ccccCCCCEEEEEeCC---CHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 34566 5988876532 235578889999999999999887766543
No 176
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=68.00 E-value=7.5 Score=27.36 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
.++|+++.+.|+|||+|+..-....
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 4699999999999999987665544
No 177
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=67.99 E-value=6.4 Score=29.93 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
.++|.++.+.|+|||+++...+....
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 46899999999999999997766543
No 178
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=67.53 E-value=7.1 Score=28.58 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=28.5
Q ss_pred cccCceecCHHHHHHHHHHcCCceeEEEEcC-CceeE
Q 033647 72 YTIGGREMTEQDFKTLAKAAGFQGFKVVCSA-FNTYI 107 (114)
Q Consensus 72 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ 107 (114)
.+.++..++.+++..++++|||++.+.+.-+ +.+++
T Consensus 281 ~te~S~Kyt~~~~~~l~~~aG~~~~~~W~d~~~~f~~ 317 (319)
T TIGR03439 281 RFECSGKYDKDEREKLCQSAGLKVVDVWTNEDGDYGI 317 (319)
T ss_pred EEEeeeCCCHHHHHHHHHHCCCeeeEEEECCCCceee
Confidence 3456778899999999999999999988664 33444
No 179
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=67.25 E-value=4.7 Score=23.88 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=23.0
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
|++++=. -| +.+....-++.+.+.|+|||.+++.|
T Consensus 71 dli~iDg-~H--~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 71 DLIFIDG-DH--SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EEEEEES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred EEEEECC-CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5544432 23 33556778899999999999988866
No 180
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=66.90 E-value=12 Score=26.25 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 3 VSIPK-AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 3 ~~~p~-~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+.+|. +|++++..--.++++++..+ +.+.|..||++++.
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls~~e~~~----l~~yl~~GG~ll~~ 231 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLSEEELYA----LDQYLMNGGKLLIL 231 (271)
T ss_pred cccCCCCCEEEEECCCCCCCHHHHHH----HHHHHHcCCeEEEE
Confidence 35766 89999999888899876444 44477789988774
No 181
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=66.79 E-value=21 Score=23.75 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEE
Q 033647 32 CYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 32 ~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
..++|++|-+++|+|-++.... |.....++++++|.+.+.+..
T Consensus 109 ~~~~l~~G~rVlIVDDllaTGg--------------------------T~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 109 HKDALKPGDRVLIVDDLLATGG--------------------------TALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred EhhhCCCCCEEEEEecchhcCh--------------------------HHHHHHHHHHHCCCEEEEEEE
Confidence 3456778888888776654332 244557788888887776544
No 182
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=66.56 E-value=9 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=9.2
Q ss_pred HHHHHHcCCce
Q 033647 85 KTLAKAAGFQG 95 (114)
Q Consensus 85 ~~ll~~aGf~~ 95 (114)
-.||++|||..
T Consensus 30 G~WL~~aGF~~ 40 (57)
T PF08845_consen 30 GKWLEEAGFTI 40 (57)
T ss_pred hhhhHHhCCCC
Confidence 47899999974
No 183
>PRK11524 putative methyltransferase; Provisional
Probab=66.13 E-value=8.4 Score=27.43 Aligned_cols=20 Identities=15% Similarity=0.502 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCcEEEEE
Q 033647 26 VKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~ 45 (114)
...+..+++.|+|||.++++
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 57889999999999999885
No 184
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=65.94 E-value=7.4 Score=20.37 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCceeEE
Q 033647 82 QDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (114)
+|+..+|+++||+..+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58899999999998854
No 185
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=65.40 E-value=4.9 Score=26.75 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEE
Q 033647 25 CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~ 45 (114)
....+.++++.|+|||.++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 577899999999999998873
No 186
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=65.22 E-value=23 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=29.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
+|.+++..-= +.+++.-.|.++.+.|+|||.|+++-...+
T Consensus 77 ~d~~~~~~pk---~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~ 116 (342)
T PRK09489 77 CDTLIYYWPK---NKQEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (342)
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 5776665432 234578899999999999999999765443
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.91 E-value=7.4 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
+|+|.... .+.++.++..+-|+|||+++|
T Consensus 163 YDaIhvGA--------aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 163 YDAIHVGA--------AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cceEEEcc--------CccccHHHHHHhhccCCeEEE
Confidence 57766652 235677778888999999987
No 188
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=63.53 E-value=14 Score=21.74 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=34.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCc
Q 033647 18 HNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 18 h~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 94 (114)
+..+++++.+++.- .+-+-|...+.+.---....++.-.....+..-.........-+..|+.+|..+++++.||+
T Consensus 17 ~~l~~~e~lr~ia~-~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 17 PPLSDEEFLRIIAA-FRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp ----HHHHHHHHHH-HHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCCHHHHHHHHHH-HHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 45788888888884 44455666665543221111110000000001111111111123458899999999999986
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=63.32 E-value=7.5 Score=30.02 Aligned_cols=23 Identities=17% Similarity=0.561 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCcEEEEEeee
Q 033647 26 VKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
.+||.++.+.|+|||+|+-.-+.
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCC
Confidence 78899999999999998665543
No 190
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=63.19 E-value=14 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=22.3
Q ss_pred ccCce-ecCHHHHHHHHHHcCCceeEEEEcCCceeEEE
Q 033647 73 TIGGR-EMTEQDFKTLAKAAGFQGFKVVCSAFNTYIME 109 (114)
Q Consensus 73 ~~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie 109 (114)
+.+|+ .-.-+|++++|+++||+.++-. +.++.-+++
T Consensus 12 NVGG~nki~MaeLr~~l~~~Gf~~V~Ty-i~SGNvvf~ 48 (137)
T PF08002_consen 12 NVGGKNKIKMAELREALEDLGFTNVRTY-IQSGNVVFE 48 (137)
T ss_dssp SBTTBS---HHHHHHHHHHCT-EEEEEE-TTTTEEEEE
T ss_pred ecCCCCcccHHHHHHHHHHcCCCCceEE-EeeCCEEEe
Confidence 34554 4589999999999999998744 444444444
No 191
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=62.65 E-value=9.8 Score=28.91 Aligned_cols=26 Identities=15% Similarity=0.496 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
.++|.++.+.|+|||.++..-+....
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 67799999999999998876665543
No 192
>PRK13699 putative methylase; Provisional
Probab=62.42 E-value=11 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCCcEEEE
Q 033647 25 CVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i 44 (114)
....++++++.|+|||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 56789999999999998876
No 193
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=62.41 E-value=12 Score=28.45 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeec
Q 033647 26 VKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
..+|+++.+.|+|||+++..-...
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCC
Confidence 468999999999999998755444
No 194
>PLN02476 O-methyltransferase
Probab=61.74 E-value=58 Score=23.46 Aligned_cols=81 Identities=9% Similarity=0.035 Sum_probs=44.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|++++ |-+..+-...+..+.+.|+|||.+++ |.++-......+. ....+.....++.++
T Consensus 195 FD~VFI-----Da~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G~V~d~~--------------~~d~~t~~ir~fn~~ 254 (278)
T PLN02476 195 YDFAFV-----DADKRMYQDYFELLLQLVRVGGVIVM-DNVLWHGRVADPL--------------VNDAKTISIRNFNKK 254 (278)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHHhcCCCcEEEE-ecCccCCcccCcc--------------cCCHHHHHHHHHHHH
Confidence 465554 33456678889999999999998766 6665433211100 000111234566666
Q ss_pred HHHcCCceeEEEEcCCceeEE
Q 033647 88 AKAAGFQGFKVVCSAFNTYIM 108 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~~i 108 (114)
+.+..=-...+.|++.+..++
T Consensus 255 v~~d~~~~~~llPigDGl~i~ 275 (278)
T PLN02476 255 LMDDKRVSISMVPIGDGMTIC 275 (278)
T ss_pred HhhCCCEEEEEEEeCCeeEEE
Confidence 654432333456776555554
No 195
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=60.95 E-value=8.1 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=20.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEE
Q 033647 16 ICHNWSEEACVKILKNCYEALPEDGKV 42 (114)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~aL~pgg~l 42 (114)
-|||....-+..|.++++++|..|..+
T Consensus 13 HLHHiEPKRVKvIVeEv~qaltegklL 39 (149)
T PF03574_consen 13 HLHHIEPKRVKVIVEEVRQALTEGKLL 39 (149)
T ss_dssp HHTT--HHHHHHHHHHHHHHHSSS---
T ss_pred cccccCchhhhhHHHHHHHHHhhhhHH
Confidence 479999888889999999999999877
No 196
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=60.89 E-value=13 Score=26.44 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEE
Q 033647 24 ACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i 44 (114)
...++++++.+.|+|||.+++
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEE
Confidence 467889999999999998755
No 197
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=59.55 E-value=16 Score=25.56 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCcEEEE
Q 033647 26 VKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i 44 (114)
.++++++.+.|+|||++++
T Consensus 196 ~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred HHHHHHHHHhcCCCCEEEE
Confidence 5788888899999999886
No 198
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=59.49 E-value=33 Score=25.08 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=28.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+|++++.+-=| ..++...|.++.+.++|||.|+++-.
T Consensus 38 ~d~~l~~~pK~---~~e~e~qLa~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 38 FDAVLLYWPKH---KAEAEFQLAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred CCEEEEEccCc---hHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 58887766542 34577889999999999999998754
No 199
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=58.35 E-value=61 Score=22.63 Aligned_cols=72 Identities=13% Similarity=0.015 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 22 EEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 22 d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.+|+.-+..|+..-|++||.+++.=-...-+...++.+ . -++-.+-|++.||+..+...+
T Consensus 156 p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~----v----------------f~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 156 PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE----V----------------FKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH----H----------------HHHHHHHHHhcCceeeEEecc
Confidence 45677777888889999987665321111111111100 0 112245667789999988877
Q ss_pred CC---ceeEEEEEeC
Q 033647 102 AF---NTYIMEFLKN 113 (114)
Q Consensus 102 ~~---~~~~ie~~~~ 113 (114)
.+ ++.+|.++++
T Consensus 216 ePye~DH~~i~~~~~ 230 (231)
T COG1889 216 EPYEKDHALIVAKYK 230 (231)
T ss_pred CCcccceEEEEEeec
Confidence 54 5888888764
No 200
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=58.13 E-value=10 Score=28.40 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
.+||++..+.|++||+++-.-.-+...
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 688999999999999998866655443
No 201
>PF13592 HTH_33: Winged helix-turn helix
Probab=57.88 E-value=9.6 Score=20.51 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=22.3
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 75 GGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-|..++.+.+..+|...||+..+-.+.
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccccCCCC
Confidence 477789999999999999998765544
No 202
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=57.40 E-value=17 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 22 EEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 22 d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
-.+..++|.++-+.++||..|+|+|.
T Consensus 218 ~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 218 ISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred hHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 34568999999999999999999985
No 203
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=57.36 E-value=6.4 Score=20.22 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHHcCCceeE
Q 033647 79 MTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~ 97 (114)
--..+|.++|.++|.+..+
T Consensus 26 glP~eW~~ll~~sgis~~e 44 (46)
T cd01093 26 GLPEEWQRLLKSSGITKEE 44 (46)
T ss_pred CCCHHHHHHHHHcCCCHHH
Confidence 3468999999999987543
No 204
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=56.47 E-value=36 Score=23.77 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=34.8
Q ss_pred HhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEE
Q 033647 34 EALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
+++.+|.+++|+|-+.................+..... ..---.+....|..+.++.|+....+..
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvg-v~vlv~~~~~~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVG-VFFLIAVGEVGIDRAREETDAPVDALYT 236 (238)
T ss_pred HHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEE-EEEEEecCchHHHHHhHhcCCCEEEEEE
Confidence 46889999999999987664321110011111111100 0000123344588888888887766554
No 205
>PRK13605 endoribonuclease SymE; Provisional
Probab=56.41 E-value=16 Score=22.64 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=9.6
Q ss_pred HHHHHHcCCce
Q 033647 85 KTLAKAAGFQG 95 (114)
Q Consensus 85 ~~ll~~aGf~~ 95 (114)
..||++|||..
T Consensus 44 G~WLeeAGF~t 54 (113)
T PRK13605 44 GQWLEAAGFAT 54 (113)
T ss_pred chhHHhhCCCC
Confidence 57999999995
No 206
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=56.34 E-value=30 Score=18.80 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEE
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTYIM 108 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i 108 (114)
.+++..|+++.|++.+.+...++.+.++
T Consensus 40 ~~di~~~~~~~g~~~~~~~~~~~~~~i~ 67 (70)
T PF01206_consen 40 VEDIPRWCEENGYEVVEVEEEGGEYRIL 67 (70)
T ss_dssp HHHHHHHHHHHTEEEEEEEESSSSEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 5678899999999988888866655544
No 207
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=55.69 E-value=20 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=28.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
.|++++ |-...+-...|..+.+.|+|||.+++ |++....
T Consensus 133 fDliFI-----DadK~~yp~~le~~~~lLr~GGliv~-DNvl~~G 171 (219)
T COG4122 133 FDLVFI-----DADKADYPEYLERALPLLRPGGLIVA-DNVLFGG 171 (219)
T ss_pred ccEEEE-----eCChhhCHHHHHHHHHHhCCCcEEEE-eecccCC
Confidence 465554 44455578899999999999998866 7666543
No 208
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=55.41 E-value=13 Score=27.28 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=21.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 5888887555433 334567899999988854
No 209
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=55.23 E-value=11 Score=22.25 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCceeEEE
Q 033647 81 EQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~ 99 (114)
+.|+..+|.+.||..++.-
T Consensus 3 Erel~~~L~~~Gf~v~R~~ 21 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAA 21 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHHhCCcEEEEec
Confidence 6788999999999988643
No 210
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=54.73 E-value=4.2 Score=28.88 Aligned_cols=82 Identities=26% Similarity=0.318 Sum_probs=48.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceec------CH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREM------TE 81 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r------t~ 81 (114)
.|+++.+..+| |..+ ...-+.+|..+|+|+|.++- .+...+ ..++ +.-...+..+. ..+|..- ..
T Consensus 138 ~DLiisSlslH-W~Nd-LPg~m~~ck~~lKPDg~Fia--smlggd---TLyE-LR~slqLAelE-R~GGiSphiSPf~qv 208 (325)
T KOG2940|consen 138 VDLIISSLSLH-WTND-LPGSMIQCKLALKPDGLFIA--SMLGGD---TLYE-LRCSLQLAELE-REGGISPHISPFTQV 208 (325)
T ss_pred hhhhhhhhhhh-hhcc-CchHHHHHHHhcCCCccchh--HHhccc---cHHH-HHHHhhHHHHH-hccCCCCCcChhhhh
Confidence 49999999997 5443 46778889999999997743 222221 1111 11112222221 1222211 24
Q ss_pred HHHHHHHHHcCCceeEE
Q 033647 82 QDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (114)
.++..+|..|||....+
T Consensus 209 rDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 209 RDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhHHhhcCccccee
Confidence 57899999999997544
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=54.31 E-value=15 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=23.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
+|+|+.=.. .+ ....+.++++|+|||.++..
T Consensus 140 fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 688886542 22 46778999999999999773
No 212
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=53.53 E-value=25 Score=23.75 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=22.6
Q ss_pred CCcceEEEeccccc-cCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 5 IPKAEAIFMKWICH-NWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 5 ~p~~D~vl~~~vlh-~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+..+|++++.+.-. .+++++...+.+ .++.||.++.+.
T Consensus 50 L~~~Dvvv~~~~~~~~l~~~~~~al~~----~v~~Ggglv~lH 88 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDELTDEQRAALRD----YVENGGGLVGLH 88 (217)
T ss_dssp HCT-SEEEEE-SSCCGS-HHHHHHHHH----HHHTT-EEEEEG
T ss_pred hcCCCEEEEECCCCCcCCHHHHHHHHH----HHHcCCCEEEEc
Confidence 44579999999875 477766444444 444677777766
No 213
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=52.91 E-value=26 Score=22.82 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=25.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
+|.+++.+-= +.+++.-+|..+...|++||.|+|+-...
T Consensus 70 ~D~vvly~PK---aK~e~~~lL~~l~~~L~~g~~i~vVGEnk 108 (155)
T PF08468_consen 70 FDTVVLYWPK---AKAEAQYLLANLLSHLPPGTEIFVVGENK 108 (155)
T ss_dssp -SEEEEE--S---SHHHHHHHHHHHHTTS-TT-EEEEEEEGG
T ss_pred CCEEEEEccC---cHHHHHHHHHHHHHhCCCCCEEEEEecCc
Confidence 5766554321 24568888999999999999999975443
No 214
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=52.90 E-value=34 Score=25.33 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=33.4
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
...|-|++..+=.-++|.+...++.++.+.+.||.+++.-
T Consensus 326 g~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifR 365 (414)
T COG5379 326 GNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFR 365 (414)
T ss_pred CCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEe
Confidence 3358899888865567888999999999999999999773
No 215
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=52.70 E-value=15 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
.+||.++.+.|+|||.|+-.-+.+...
T Consensus 268 ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 268 KEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred HHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 578899999999999998877665443
No 216
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=52.69 E-value=12 Score=24.16 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
.-.+-|+++.+.|+|||.+.|+=+.
T Consensus 70 TTl~Al~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 70 TTLKALEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHHHHHHhhccCCEEEEEEeC
Confidence 3567788889999999999986543
No 217
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=52.64 E-value=30 Score=18.84 Aligned_cols=11 Identities=0% Similarity=0.157 Sum_probs=5.7
Q ss_pred hCCCCcEEEEE
Q 033647 35 ALPEDGKVIVV 45 (114)
Q Consensus 35 aL~pgg~l~i~ 45 (114)
.+..||+++|.
T Consensus 59 ~v~~G~~lvl~ 69 (70)
T PF14258_consen 59 WVEAGNTLVLA 69 (70)
T ss_pred HHHcCCEEEEe
Confidence 33456666554
No 218
>PRK10556 hypothetical protein; Provisional
Probab=51.92 E-value=21 Score=21.70 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.++|....|++|||+..-+.+-
T Consensus 4 RPDEVArVLe~aGF~~D~vt~~ 25 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQK 25 (111)
T ss_pred ChHHHHHHHHhcCceEEEeech
Confidence 3689999999999998776654
No 219
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=50.83 E-value=27 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
.+..+++++.+.++.||.++++|+-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 468899999999999999999998874
No 220
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.41 E-value=43 Score=24.78 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=52.8
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhc-chhccccccCcee--cCHHHHHH
Q 033647 10 AIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQL-DCFMLAYTIGGRE--MTEQDFKT 86 (114)
Q Consensus 10 ~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~--rt~~e~~~ 86 (114)
+++.-=+|...+.+++..+++-+.+.. +.+.+++.|++.+.++-+. .+...+ ... ....|-+ -|.+..++
T Consensus 191 i~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~---vM~~nlk~r~---~~L~gle~y~s~Esq~~ 263 (335)
T KOG2918|consen 191 IFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGK---VMLANLKRRG---CPLHGLETYNSIESQRS 263 (335)
T ss_pred eehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHH---HHHHHHHhcC---CCCchhhhcccHHHHHH
Confidence 344444778889999999999888765 4566778899986654221 010000 000 0112222 26778888
Q ss_pred HHHHcCCceeEEEEc
Q 033647 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
=+.++||+-+.+..+
T Consensus 264 Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 264 RFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHhcCCceeehhhH
Confidence 888899999887765
No 221
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=49.36 E-value=17 Score=26.38 Aligned_cols=62 Identities=27% Similarity=0.343 Sum_probs=36.3
Q ss_pred eEEEecc-ccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 9 EAIFMKW-ICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 9 D~vl~~~-vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
|++++++ +.|.++++ +.++++|+|.|++ |...- ..++. -....--.+.+.+|
T Consensus 224 d~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaKf-------------mvdLr-----KEq~~~F~~kv~eL 276 (289)
T PF14740_consen 224 DLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAKF-------------MVDLR-----KEQLQEFVKKVKEL 276 (289)
T ss_pred CEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecchh-------------heeCC-----HHHHHHHHHHHHHH
Confidence 6666555 77777775 4557889987755 64211 01110 00011114577999
Q ss_pred HHHcCCceeE
Q 033647 88 AKAAGFQGFK 97 (114)
Q Consensus 88 l~~aGf~~~~ 97 (114)
.++|||+...
T Consensus 277 A~~aG~~p~~ 286 (289)
T PF14740_consen 277 AKAAGFKPVT 286 (289)
T ss_pred HHHCCCcccc
Confidence 9999998753
No 222
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=49.13 E-value=23 Score=22.47 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=18.4
Q ss_pred ccCceecCHHHHHHHHHHcCC-----ceeEEEEc-CCcee
Q 033647 73 TIGGREMTEQDFKTLAKAAGF-----QGFKVVCS-AFNTY 106 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf-----~~~~~~~~-~~~~~ 106 (114)
.-+|+.++.++|.++|. ++| ...++.|. .|.+.
T Consensus 55 ~~~G~k~~~e~WK~~~~-~~~~~~~~~~~~~~~gl~Gg~v 93 (127)
T PF05772_consen 55 EWNGRKLDPEDWKELFT-AAFLIATGEEQRVVPGLDGGFV 93 (127)
T ss_dssp -BTTB---HHHHHHHHH-HHH-----S--EEEE-TTSSEE
T ss_pred HhcCccCCHHHHHHHHH-HHHhhhccchhhhccCCCCCeE
Confidence 34799999999999998 555 55566654 44333
No 223
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.83 E-value=50 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.0
Q ss_pred ccCceecCHHHHHHHHHHcCCceeE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
..+|..++.+++.++++ +|...+-
T Consensus 196 i~~GGi~s~edi~~l~~-~G~~~vi 219 (234)
T PRK13587 196 IASGGIRHQQDIQRLAS-LNVHAAI 219 (234)
T ss_pred EEeCCCCCHHHHHHHHH-cCCCEEE
Confidence 46788999999999985 7876553
No 224
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=47.86 E-value=28 Score=24.41 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.6
Q ss_pred cCHHHHHHHHHHcCCceeEEEEcCC
Q 033647 79 MTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
-++++|...|+++||+..-..+-.|
T Consensus 216 ddedswk~il~~~G~~v~~~l~GLG 240 (265)
T COG4822 216 DDEDSWKNILEKNGFKVEVYLHGLG 240 (265)
T ss_pred cchHHHHHHHHhCCceeEEEeecCC
Confidence 3668999999999999855444333
No 225
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=47.63 E-value=19 Score=24.09 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=19.0
Q ss_pred CCCcceEEEecccccc-C----ChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 4 SIPKAEAIFMKWICHN-W----SEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 4 ~~p~~D~vl~~~vlh~-~----~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.+..+|+|++.++=.. + ... .-++.+++..+.||.++++-
T Consensus 64 ~L~~yD~vIl~dv~~~~ll~~~~~~---~~~~~l~~yV~~GGgLlmig 108 (177)
T PF07090_consen 64 ELNRYDVVILSDVPANSLLKSRRSP---NQLELLADYVRDGGGLLMIG 108 (177)
T ss_dssp HHCT-SEEEEES--HHHHHT----H---HHHHHHHHHHHTT-EEEEE-
T ss_pred HHhcCCEEEEeCCCchhcccccCCH---HHHHHHHHHHHhCCEEEEEe
Confidence 3556899999886432 2 022 22344444444587777753
No 226
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=46.77 E-value=15 Score=25.17 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=21.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+|.|++.......+. .+ .+.|++||++++.-
T Consensus 142 fD~I~v~~a~~~ip~----~l----~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 142 FDRIIVTAAVPEIPE----AL----LEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEEEESSBBSS--H----HH----HHTEEEEEEEEEEE
T ss_pred cCEEEEeeccchHHH----HH----HHhcCCCcEEEEEE
Confidence 599999988765544 33 44689999998843
No 227
>PRK06852 aldolase; Validated
Probab=46.61 E-value=20 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 18 HNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 18 h~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
-+|++++....+.+..+.++..||++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~sGr~~iv 36 (304)
T PRK06852 9 LDVPEEMREEYIENYLEITKGTGRLMLF 36 (304)
T ss_pred CcCChhcChhHHHHHHHhhCCCCCEEEE
Confidence 3688888899999999999999998886
No 228
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=46.51 E-value=24 Score=20.55 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=19.9
Q ss_pred eecCHHHHHHHHHHcCCceeEEEEc
Q 033647 77 REMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-+.+.+++.+.|++.||+++....-
T Consensus 6 VE~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 6 VEEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred ecCCchHHHHHHHHCCCEEEecCCc
Confidence 4556789999999999998876543
No 229
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=45.72 E-value=13 Score=25.01 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCcEEEEE
Q 033647 26 VKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~ 45 (114)
..+|..+.+.|+|||.+.+.
T Consensus 113 ~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 113 PEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred chHHHHHHHHcCCCCEEEEE
Confidence 57889999999999999663
No 230
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=45.61 E-value=47 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=30.0
Q ss_pred ccCceecCHHHHHHHHHHcCCceeEEEEc-CCceeEEEEE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFKVVCS-AFNTYIMEFL 111 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~~ie~~ 111 (114)
+..++..+..++.+.++++||+.++.+.- ..+++++.+.
T Consensus 281 tE~S~Kfslq~irq~laa~gl~~v~~wtd~~qdf~~~l~~ 320 (321)
T COG4301 281 TEISRKFSLQAIRQQLAAAGLEPVQKWTDAIQDFGLSLAA 320 (321)
T ss_pred hhhhhhCCHHHHHHHHHhcCCeEeeehhhhhhhhhhheec
Confidence 45677888999999999999999887754 3456665554
No 231
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.47 E-value=40 Score=19.33 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHhCCCCcE
Q 033647 20 WSEEACVKILKNCYEALPEDGK 41 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~pgg~ 41 (114)
+.++...++++++.+.+.|+..
T Consensus 51 ~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 51 LTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred cchhhHHHHHHHHHHhcCCCEE
Confidence 4455677899999999999743
No 232
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=45.37 E-value=27 Score=20.21 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=21.8
Q ss_pred ccCceecCHHHHHHHHHHcCCceeEEE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..+.+..+.+++.++|.+|||...+-.
T Consensus 53 r~GaKH~~q~~Lnq~L~~Ag~~~LK~K 79 (84)
T PF13319_consen 53 RIGAKHFDQEELNQRLIDAGWEGLKDK 79 (84)
T ss_pred HhccccCCHHHHHHHHHHcCccccchh
Confidence 346777899999999999999876543
No 233
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=45.02 E-value=38 Score=21.57 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.5
Q ss_pred eEEEeccccc--cCChHHHHHHHHHHHHhCCC-CcEEEEEeee
Q 033647 9 EAIFMKWICH--NWSEEACVKILKNCYEALPE-DGKVIVVDCI 48 (114)
Q Consensus 9 D~vl~~~vlh--~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~~ 48 (114)
.++|++++=+ ..++.....++..+.+.|+. ++.++++|.+
T Consensus 42 ~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~l 84 (136)
T PF05763_consen 42 PVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDGL 84 (136)
T ss_pred cEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEecH
Confidence 5899998864 46677778888999999988 6678888854
No 234
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.96 E-value=58 Score=22.87 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=20.9
Q ss_pred ccCceecCHHHHHHHHHHcCCceeE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
..+|..++.+++.+++++.|..-+-
T Consensus 200 IasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 200 IALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 5678999999999999888877653
No 235
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=44.64 E-value=28 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.++|....|+.+||+..-+.+-
T Consensus 4 rpdeva~vle~~gf~~d~v~~~ 25 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVTDK 25 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEETT
T ss_pred ChHHHHHHHHhcCceEEEeecc
Confidence 3689999999999998776654
No 236
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=44.24 E-value=1.1e+02 Score=21.32 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=39.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecC------
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMT------ 80 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt------ 80 (114)
.+|+.+.+.. .+|..+.+.|+| |.+++. +.|.-...+ .. ..-+|-.++
T Consensus 143 ~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L--~KPqFE~~~------~~-------~~~~giv~~~~~~~~ 196 (228)
T TIGR00478 143 TFDVSFISLI----------SILPELDLLLNP-NDLTLL--FKPQFEAGR------EK-------KNKKGVVRDKEAIAL 196 (228)
T ss_pred eeeEEEeehH----------hHHHHHHHHhCc-CeEEEE--cChHhhhcH------hh-------cCcCCeecCHHHHHH
Confidence 3576665544 357888899999 655432 222221110 00 012344444
Q ss_pred -HHHHHHHHHHcCCceeEEEEcC
Q 033647 81 -EQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 81 -~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
.+++..++.+.||+...+.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 197 ALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHcCCCeEeeEEECC
Confidence 4467778888899988877653
No 237
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=43.40 E-value=21 Score=20.70 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=17.9
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEEcCC
Q 033647 75 GGREMTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
.|...+.+++...|+..|+..+.-...+|
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~~~~pG 31 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSNPDRPG 31 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS--STT
T ss_pred CCcccCHHHHHHHHHHcCCCcCCCCCCCe
Confidence 57778999999999999999885444444
No 238
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=42.97 E-value=34 Score=23.81 Aligned_cols=68 Identities=7% Similarity=-0.072 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh-hhhh----cchhccc---c--ccCceecCHHHHHHHHHHcCCce
Q 033647 26 VKILKNCYEALPEDGKVIVVDCILPVLPDTSLASK-QVIQ----LDCFMLA---Y--TIGGREMTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~-~~~~----~~~~~~~---~--~~~g~~rt~~e~~~ll~~aGf~~ 95 (114)
..+|+.+.+.|+|||.+.+.- +.. ...++ +... ..+.... . ......+...++.+-....|-.+
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aT---D~~---~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE~k~~~~g~~i 217 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFAT---DNE---EYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKFRRLGHPV 217 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEe---cCH---HHHHHHHHHHHhcchhhhccccccccccccccCCCCcHHHHHHHhCCCce
Confidence 468899999999999997742 211 11111 1100 0011110 0 12233466778888888888777
Q ss_pred eEEE
Q 033647 96 FKVV 99 (114)
Q Consensus 96 ~~~~ 99 (114)
.++.
T Consensus 218 ~~l~ 221 (227)
T COG0220 218 YDLE 221 (227)
T ss_pred EEEE
Confidence 6554
No 239
>PF15603 Imm45: Immunity protein 45
Probab=42.90 E-value=68 Score=18.69 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=30.2
Q ss_pred ceEEEeccccccC---------ChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 8 AEAIFMKWICHNW---------SEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 8 ~D~vl~~~vlh~~---------~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+|.++..+-+-+| ++.+..++++.+.+.+...|..+.+|
T Consensus 35 ~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 35 GDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred cCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 5777777777644 55678899999999999888877654
No 240
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=42.85 E-value=55 Score=17.54 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCcee
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
..++..|+++.|++........+.+.
T Consensus 39 ~~~i~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd00291 39 VEDIPAWAKETGHEVLEVEEEGGVYR 64 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCEEE
Confidence 56778999999999877666554333
No 241
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=42.47 E-value=51 Score=23.88 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=46.8
Q ss_pred CcceEEEeccccccCChHHHHHH---HHHHHHhCCCCcEEEEEeeecCCCCCC--ch--hhhhh-hhc--------chhc
Q 033647 6 PKAEAIFMKWICHNWSEEACVKI---LKNCYEALPEDGKVIVVDCILPVLPDT--SL--ASKQV-IQL--------DCFM 69 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~l---L~~~~~aL~pgg~l~i~e~~~~~~~~~--~~--~~~~~-~~~--------~~~~ 69 (114)
.++|+++..+.= +.+|.+.+ ++++++. .|. .++++|++.++...- ++ ..... .+. +.+.
T Consensus 72 ~~~davltGYlg---s~~qv~~i~~~v~~vk~~-~P~-~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fE 146 (281)
T COG2240 72 GECDAVLTGYLG---SAEQVRAIAGIVKAVKEA-NPN-ALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFE 146 (281)
T ss_pred cccCEEEEccCC---CHHHHHHHHHHHHHHhcc-CCC-eEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHH
Confidence 457999888875 34443333 3333333 445 568889999987631 00 00000 011 1111
Q ss_pred cccccCceecCHHHHHHHHHHcC---CceeEEEEc
Q 033647 70 LAYTIGGREMTEQDFKTLAKAAG---FQGFKVVCS 101 (114)
Q Consensus 70 ~~~~~~g~~rt~~e~~~ll~~aG---f~~~~~~~~ 101 (114)
+.+..+...++.++..+.++..+ -+.+-+.+.
T Consensus 147 Le~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~ 181 (281)
T COG2240 147 LEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSL 181 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecc
Confidence 21224455778887776666554 565545444
No 242
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.96 E-value=60 Score=17.76 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEE
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTYIM 108 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i 108 (114)
.+++.+|.++.|++.+......+.+.++
T Consensus 39 ~~di~~~~~~~g~~~~~~~~~~~~~~~~ 66 (69)
T cd03423 39 TRDIPKFCTFLGHELLAQETEDEPYRYL 66 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEcCCEEEEE
Confidence 5577888899999998777654444443
No 243
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=41.91 E-value=98 Score=21.40 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=27.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCC-CcEEEEEeeecCC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPE-DGKVIVVDCILPV 51 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~~~~~ 51 (114)
+|+.+...+...........+++.+.+.|+. +=.+.-.|....+
T Consensus 6 GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~aD~~~~NlE~~v~~ 50 (250)
T PF09587_consen 6 GDIMLGRGVYQRAEKGGFDYIFEDVKPLLQSADLVVANLETPVTD 50 (250)
T ss_pred eccccCcchhhhcccCChHHHHHHHHHHHhhCCEEEEEeeecCcC
Confidence 4666555555444333456778888888776 5566666776643
No 244
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=41.57 E-value=59 Score=21.88 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=35.4
Q ss_pred HhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 34 EALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
..+++|-+++|+|-+.................+..... ..---+++...+.+.+++.|+....+...
T Consensus 112 ~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvg-v~~lvd~~~~~g~~~l~~~g~~~~sl~~~ 178 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAG-IGIVIEKSFQDGRKLLEEKGYRVESLARI 178 (189)
T ss_pred hhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEE-EEEEEEccCccHHHHHHhcCCcEEEEEEe
Confidence 46789999999998887654321110000001111100 00011344446788888889887766654
No 245
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=41.13 E-value=62 Score=19.90 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHhCCCC----cEEEEEe
Q 033647 20 WSEEACVKILKNCYEALPED----GKVIVVD 46 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~pg----g~l~i~e 46 (114)
.+|+++..+++.+.++...| |++++.+
T Consensus 65 v~D~~v~~vv~~I~~~a~TG~~GDGkIfV~p 95 (112)
T PRK10858 65 VPDDIVDTCVDTIIRTAQTGKIGDGKIFVFD 95 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEE
Confidence 36888888888888888764 8888865
No 246
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=40.53 E-value=22 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred CcceEEEeccccc---cCChHHHHHHHHHHHHhCCCCcEEE
Q 033647 6 PKAEAIFMKWICH---NWSEEACVKILKNCYEALPEDGKVI 43 (114)
Q Consensus 6 p~~D~vl~~~vlh---~~~d~~~~~lL~~~~~aL~pgg~l~ 43 (114)
+.+|++++.--.. +..-.+...+.+.++++...|+.++
T Consensus 6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~ 46 (158)
T PF07685_consen 6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIY 46 (158)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEE
Confidence 4589999987543 3333335667788888877776543
No 247
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=40.42 E-value=1.6e+02 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 20 WSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
+.+++...-++++.+++...|..++++..
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~ 104 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLT 104 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEcc
Confidence 45666788899999999887777777754
No 248
>PRK03094 hypothetical protein; Provisional
Probab=40.06 E-value=38 Score=19.69 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.0
Q ss_pred eecCHHHHHHHHHHcCCceeEEEE
Q 033647 77 REMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
-+.+.+++.+.|++.||+++++..
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecCc
Confidence 456688999999999999987754
No 249
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=39.87 E-value=82 Score=18.75 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=28.2
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHH---HhCCCCcEEEEEeeecCCCC
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCY---EALPEDGKVIVVDCILPVLP 53 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~---~aL~pgg~l~i~e~~~~~~~ 53 (114)
.+||++++.-+- +.+..-.++++.++ +.=+|+.++++.-.+....+
T Consensus 35 e~AD~iiiNTC~--V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~ 83 (98)
T PF00919_consen 35 EEADVIIINTCT--VRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG 83 (98)
T ss_pred ccCCEEEEEcCC--CCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh
Confidence 348999988753 33333344444444 33248899998887766554
No 250
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=39.46 E-value=37 Score=20.41 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCceeEE
Q 033647 81 EQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~ 98 (114)
.+.|+..|+++||++.-+
T Consensus 81 ~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 81 PDSWKSILEAAGIKVETV 98 (103)
T ss_pred chhHHHHHHHCCCeeEEE
Confidence 568999999999988643
No 251
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=39.41 E-value=43 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.1
Q ss_pred ceecCHHHHHHHHHHcCCcee
Q 033647 76 GREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~ 96 (114)
|...+.+++.++|+..||...
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEE
Confidence 566789999999999999874
No 252
>PRK09662 GspL-like protein; Provisional
Probab=39.10 E-value=28 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCceeEEEE
Q 033647 81 EQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~ 100 (114)
...|.++|+++|++..+++|
T Consensus 7 mq~wl~~l~~agl~~~~~vP 26 (286)
T PRK09662 7 MRNIAQWLQANGITRATVAP 26 (286)
T ss_pred HHHHHHHHHHcCCcceeecC
Confidence 35899999999999998876
No 253
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.94 E-value=69 Score=17.57 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCcee
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
.+++..|+++.|++........+.+.
T Consensus 39 ~~ni~~~~~~~g~~v~~~~~~~~~~~ 64 (69)
T cd03422 39 INNIPIDARNHGYKVLAIEQSGPTIR 64 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCEEE
Confidence 55678888999999987766554333
No 254
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=38.72 E-value=68 Score=17.49 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 21 SEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 21 ~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+..+....+-+..++|+||..+.++.
T Consensus 8 ~~~~p~~~il~~~~~L~~Ge~l~lv~ 33 (69)
T PF10006_consen 8 PPPEPHERILEALDELPPGETLELVN 33 (69)
T ss_pred CCcChHHHHHHHHHcCCCCCEEEEEe
Confidence 34444555556677899999887754
No 255
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=38.66 E-value=29 Score=20.62 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=21.0
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 17 CHNWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 17 lh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
||.++...-..-|+.|.+.+.+|-.++++|.
T Consensus 2 Lhtv~~Sp~~~~l~~~l~~~~~~D~iLLieD 32 (95)
T PRK13510 2 LHTLSRSPWLTDFAALLRLLKEGDDLLLLQD 32 (95)
T ss_pred eeeecCCCchhHHHHHHHhcCCCCEEEEehH
Confidence 4555543333577888999999877777753
No 256
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=38.30 E-value=43 Score=24.15 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCcEEEEE
Q 033647 26 VKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~ 45 (114)
...++.|+++|+++|.++..
T Consensus 170 ~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 170 EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 68899999999999999886
No 257
>PLN02823 spermine synthase
Probab=38.19 E-value=37 Score=25.04 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=15.7
Q ss_pred HHHHH-HHHHhCCCCcEEEE
Q 033647 26 VKILK-NCYEALPEDGKVIV 44 (114)
Q Consensus 26 ~~lL~-~~~~aL~pgg~l~i 44 (114)
..+++ .+++.|+|||.+++
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 46777 88999999998765
No 258
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=37.97 E-value=41 Score=18.57 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=16.0
Q ss_pred ceecCHHHHHHHHHHcCCceeEE
Q 033647 76 GREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
|...+.++..++|+..||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 55778999999999999998763
No 259
>PRK09213 pur operon repressor; Provisional
Probab=37.65 E-value=1.2e+02 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=16.9
Q ss_pred HhCCCCcEEEEEeeecCCCCC
Q 033647 34 EALPEDGKVIVVDCILPVLPD 54 (114)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~ 54 (114)
+++++|.+++|+|-+......
T Consensus 191 ~~l~~G~rVLIVDDv~~TGgT 211 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAGGT 211 (271)
T ss_pred hhcCCcCEEEEEeeecccCHh
Confidence 578999999999988876543
No 260
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=37.44 E-value=65 Score=16.84 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=24.5
Q ss_pred ccccCChHHHHHHHHHHHHhCC------CCcEEEEEeeecC
Q 033647 16 ICHNWSEEACVKILKNCYEALP------EDGKVIVVDCILP 50 (114)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~aL~------pgg~l~i~e~~~~ 50 (114)
++...++++..++++.+.+++. ++...++++.+.+
T Consensus 8 ~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~ 48 (61)
T PRK02220 8 LIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSK 48 (61)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeCh
Confidence 4456789999999999988765 4555666554443
No 261
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=37.37 E-value=48 Score=23.69 Aligned_cols=68 Identities=16% Similarity=0.002 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEE
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..-.|.+..+.|++.|.+.|++.-.-...... ...+...- .....+.+...++..+|.+-|..++++.
T Consensus 99 ~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~------rv~g~~~~-~~~~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 99 DHDFLWRIHKALPERGEIGIFNRSHYEDVLVV------RVHGLIPK-AIWERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred cCchHHHHHHhCCCCCeEEEEcCccccchhhh------hhcCCCCH-HHHHHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 55667888888888888888776544432110 00000000 0011223356688889999998888764
No 262
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=37.27 E-value=36 Score=19.16 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=12.5
Q ss_pred ceecCHHHHHHHHHHcCCcee
Q 033647 76 GREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~ 96 (114)
....+.+|+.+.|++.||...
T Consensus 17 ~~i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 17 HEISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp S---SHHHHHHHHHHTT-T--
T ss_pred CCcCCHHHHHHHHHHcCCCcc
Confidence 446788888888888888753
No 263
>PRK04280 arginine repressor; Provisional
Probab=37.13 E-value=36 Score=22.03 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=18.0
Q ss_pred CceecCHHHHHHHHHHcCCceeE
Q 033647 75 GGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
+-...|.+|+.+.|+++||...+
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCeeh
Confidence 34567889999999999998653
No 264
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=37.04 E-value=23 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeec
Q 033647 26 VKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
...++.+.+.|+++|+++++-...
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 367888889999999999987555
No 265
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=36.77 E-value=1.2e+02 Score=20.09 Aligned_cols=7 Identities=29% Similarity=0.909 Sum_probs=3.0
Q ss_pred cEEEEEe
Q 033647 40 GKVIVVD 46 (114)
Q Consensus 40 g~l~i~e 46 (114)
..+++.|
T Consensus 108 p~llLlD 114 (176)
T cd03238 108 GTLFILD 114 (176)
T ss_pred CCEEEEe
Confidence 4444443
No 266
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.76 E-value=96 Score=18.60 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=30.0
Q ss_pred cCceecCHHHHHHHHHHcCCcee----EEEEcCCceeEEEEEe
Q 033647 74 IGGREMTEQDFKTLAKAAGFQGF----KVVCSAFNTYIMEFLK 112 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~----~~~~~~~~~~~ie~~~ 112 (114)
-.|..-+.+.+.+.|++.|++.. .++...|..+-||+.+
T Consensus 7 krGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~ 49 (96)
T COG4004 7 KRGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP 49 (96)
T ss_pred ccCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec
Confidence 35677789999999999998753 4566667788888765
No 267
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=36.73 E-value=34 Score=24.35 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=37.0
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCcee
Q 033647 17 CHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 17 lh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
-.||.......+.+++.+.++||+.+++++.. .. . ....++...|++.||+.+
T Consensus 209 ~~Dw~~~~~~~i~~~v~~~~~~G~IILmHd~~------~T-----------------~----~aL~~iI~~Lk~kGy~fv 261 (268)
T TIGR02873 209 TIDWKNPSPSVMVNRVLSKIHPGAMVLMHPTA------SS-----------------T----EGLEEMITIIKEKGYKIG 261 (268)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCcEEEEcCCc------cH-----------------H----HHHHHHHHHHHHCCCEEE
Confidence 35675555677888888889999888776521 00 0 014566778888888876
Q ss_pred EEE
Q 033647 97 KVV 99 (114)
Q Consensus 97 ~~~ 99 (114)
.+.
T Consensus 262 tl~ 264 (268)
T TIGR02873 262 TIT 264 (268)
T ss_pred eHH
Confidence 553
No 268
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=36.66 E-value=18 Score=21.48 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHH
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKA 90 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 90 (114)
++..+|+-+.+.=..=|.-.++|...+....... ..-++- +...+-|+.++.++|..++.+
T Consensus 5 ~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i~----~~~~~~--l~~yG~gk~~~~~~~~~li~~ 65 (106)
T PF09382_consen 5 EAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKIR----EKGHDQ--LPTYGIGKDMSKDDWERLIRQ 65 (106)
T ss_dssp HHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCCH----HTTGGG--STTTTTTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHhccchhhh----hcCCCc--CcccCCcccCCHHHHHHHHHH
Confidence 4677777666653334555566666655433210 111111 212355788999999888874
No 269
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=36.48 E-value=16 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.8
Q ss_pred HHHHHHHHHhC----CCCcEEEEEeeecC
Q 033647 26 VKILKNCYEAL----PEDGKVIVVDCILP 50 (114)
Q Consensus 26 ~~lL~~~~~aL----~pgg~l~i~e~~~~ 50 (114)
.++|+++.+.+ +|||+++-.-.-..
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred HHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 67899999999 99999988765544
No 270
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=36.42 E-value=22 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=25.5
Q ss_pred cceEEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEe
Q 033647 7 KAEAIFMKWICHNWSEEA--CVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~--~~~lL~~~~~aL~pgg~l~i~e 46 (114)
.+|++++-..--.-+... ....++.+++.|+|||.+++.-
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 368777633221111111 3588999999999999998754
No 271
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=36.25 E-value=95 Score=18.43 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCC-CcEEEEEee
Q 033647 4 SIPKAEAIFMKWICHNWSEEACVKILKNCYEALPE-DGKVIVVDC 47 (114)
Q Consensus 4 ~~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~ 47 (114)
+.-.+.++++-+. +.++++...++.++.+.+.. ||.++-+|.
T Consensus 4 ~mr~YE~~~Il~p--~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~ 46 (97)
T CHL00123 4 KLNKYETMYLLKP--DLNEEELLKWIENYKKLLRKRGAKNISVQN 46 (97)
T ss_pred cccceeEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3334555444443 45888899999999999877 667766554
No 272
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=35.93 E-value=53 Score=21.56 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCCcEEEEE
Q 033647 26 VKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~ 45 (114)
..+++.+.+.|+++|.++|.
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 45567788889999999883
No 273
>COG1438 ArgR Arginine repressor [Transcription]
Probab=35.41 E-value=38 Score=22.15 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=15.9
Q ss_pred CceecCHHHHHHHHHHcCCcee
Q 033647 75 GGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
.-+..|.+|+.+.|++.||+..
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vT 38 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVT 38 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEe
Confidence 3456678888888888888754
No 274
>PRK11018 hypothetical protein; Provisional
Probab=35.27 E-value=87 Score=17.70 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCcee
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
.+++..|+++.|++........+.+.
T Consensus 48 ~~di~~~~~~~G~~v~~~~~~~g~~~ 73 (78)
T PRK11018 48 INNIPLDARNHGYTVLDIQQDGPTIR 73 (78)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCeEE
Confidence 45678888999999887666544333
No 275
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=34.95 E-value=74 Score=21.96 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCcceEEEe-cccc-ccCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 5 IPKAEAIFM-KWIC-HNWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 5 ~p~~D~vl~-~~vl-h~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+..+|+++. .+.- ..+++++..++.+.+ +.||.++.+..
T Consensus 56 L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V----~~GgGlv~lHs 96 (215)
T cd03142 56 LAETDVLLWWGHIAHDEVKDEIVERVHRRV----LDGMGLIVLHS 96 (215)
T ss_pred HhcCCEEEEeCCCCcCcCCHHHHHHHHHHH----HcCCCEEEECC
Confidence 445798887 3444 458887766666544 44655555554
No 276
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=34.81 E-value=43 Score=23.40 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEE
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
...-.|.+..+.|++.|.+.|.+.-.-..... ....+...- .....+.....++...|.+.|..++++.
T Consensus 73 ~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv------~rv~~~~~~-~~~~~~~~~I~~FEr~L~~~G~~IlKff 141 (230)
T TIGR03707 73 RTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV------ERVMGFCTD-EEYEEFLRQVPEFERMLVRDGIHLFKYW 141 (230)
T ss_pred HcChHHHHHHHhCCCCCeEEEEeCchhhhHHH------HHhcCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35667888888888888888877544433110 000000000 0011222345688889999998888764
No 277
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=34.76 E-value=1.1e+02 Score=24.24 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=33.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+||+|++--.-..+.-.|...+-+-+++.++++-.++++|+
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 47999998888878878877777888888888888888886
No 278
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=34.47 E-value=1.6e+02 Score=23.82 Aligned_cols=33 Identities=6% Similarity=-0.011 Sum_probs=28.1
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEEcCCcee
Q 033647 74 IGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
.-|...+.+++.+.|.+.||+.+..+..+|.++
T Consensus 162 ~~G~~i~~~~l~~~L~~~GY~r~~~v~~~GeFs 194 (652)
T PRK05298 162 RVGQEIDRRELLRRLVDLQYERNDIDFQRGTFR 194 (652)
T ss_pred eCCCCcCHHHHHHHHHHcCCcccCccCCCceEE
Confidence 458889999999999999999998877776554
No 279
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=34.41 E-value=1.2e+02 Score=21.75 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.4
Q ss_pred HhCCCCcEEEEEeeecCCCC
Q 033647 34 EALPEDGKVIVVDCILPVLP 53 (114)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~ 53 (114)
++|++|.+++|+|-+.....
T Consensus 189 ~~l~~G~rVLIVDDv~~TGg 208 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAGG 208 (268)
T ss_pred hhCCCcCEEEEEeeecccCH
Confidence 57889999999998887654
No 280
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=34.22 E-value=91 Score=23.89 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=34.8
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
++|+++++.|+. ++++...++- ++..-+++|-|++-.+.+.+..
T Consensus 271 ~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 271 TEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISSKPLVPRP 314 (419)
T ss_pred hcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEeccccccccc
Confidence 458999999996 5666665555 7888899999999988888754
No 281
>PRK06132 hypothetical protein; Provisional
Probab=34.15 E-value=44 Score=25.01 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeec
Q 033647 26 VKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
..+.+++...|.||+.|+|.|.-.
T Consensus 321 ~~~~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 321 PDFRRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCC
Confidence 478899999999999999998655
No 282
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=34.13 E-value=92 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHhCCC----CcEEEEEe
Q 033647 20 WSEEACVKILKNCYEALPE----DGKVIVVD 46 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~p----gg~l~i~e 46 (114)
.+|+++..+.+-+.++... +|++++.+
T Consensus 65 v~de~ve~vv~~I~~~a~TG~~GDGkIfV~p 95 (112)
T PRK10665 65 IADDQLDEVIDIISKAAYTGKIGDGKIFVAE 95 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEE
Confidence 4688888888888888754 38888865
No 283
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=34.12 E-value=1.4e+02 Score=20.60 Aligned_cols=69 Identities=14% Similarity=0.000 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeE
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
...+++++.+. . +.+++.|.-......++..+...............+|..|+.+++.++++ +|...+-
T Consensus 148 ~~~~~~~~~~~--~-~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vi 216 (233)
T cd04723 148 PEELLRRLAKW--P-EELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-LGASGAL 216 (233)
T ss_pred HHHHHHHHHHh--C-CeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEE
Confidence 45556665554 3 46666675443333332211111111111111346788999999999987 6866553
No 284
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=34.08 E-value=84 Score=17.17 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeE
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTYI 107 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~~ 107 (114)
.+++..|.++.|++........+.+.+
T Consensus 39 ~~di~~~~~~~G~~~~~~~~~~~~~~~ 65 (69)
T cd03420 39 ARDAQAWCKSTGNTLISLETEKGKVKA 65 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence 457788899999998876665444443
No 285
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=33.72 E-value=63 Score=23.22 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccC---ceecCHHHHHHHHHHcCCceeEEE
Q 033647 25 CVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIG---GREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..--|++..+.|+.+|.++|+|.-.-+.... ...+++ ++.. -.-+...++.++|.+.|-.+++..
T Consensus 117 ~qwY~qRy~~~lPa~GeiviFdRSwYnr~gV------eRVmGf----ct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfw 184 (270)
T COG2326 117 GQWYFQRYVAHLPAAGEIVIFDRSWYNRAGV------ERVMGF----CTPKQYKRFLREIPEFERMLVESGIILVKFW 184 (270)
T ss_pred ccHHHHHHHHhCCCCCeEEEechhhccccCe------eecccc----CCHHHHHHHHHHhhHHHHHHHhCCeEEEEEE
Confidence 5566888888899999998888655543211 011111 1111 112355688999999998777764
No 286
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=33.71 E-value=1e+02 Score=20.80 Aligned_cols=67 Identities=13% Similarity=-0.001 Sum_probs=34.5
Q ss_pred HhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 34 EALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
+++++|.+++|+|-+....................... ..---.|....+.+.|++.|.....+...
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvg-v~~lvd~~~~~g~~~l~~~gvpv~sL~~~ 178 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAG-IGIVIEKSFQNGRQELVELGYRVESLARI 178 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEE-EEEEEEecCccHHHHHHhcCCcEEEEEEE
Confidence 35789999999999887664321110000001111000 00011344345677788888776655543
No 287
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=33.67 E-value=96 Score=21.54 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=27.7
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCC-CcEEEEEeeecC
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPE-DGKVIVVDCILP 50 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~~~~ 50 (114)
|..|+++++.++-+- +.+.++++ +.+.|.. |..+++.|+-.+
T Consensus 141 ~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 346999999998644 44678887 5555554 666665554433
No 288
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=33.21 E-value=55 Score=16.60 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHHcCCcee
Q 033647 79 MTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (114)
.+.+++.++.+++||...
T Consensus 27 ~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDFT 44 (49)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 478999999999999753
No 289
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=33.09 E-value=1.6e+02 Score=20.96 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=31.6
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE-EeeecCCC
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV-VDCILPVL 52 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i-~e~~~~~~ 52 (114)
|++.++=++|-+.-++-.++.-+|+++++..++|...++ +|+-.+.+
T Consensus 27 P~~~IvDitH~i~pf~i~~aA~~L~~a~~~fP~gtvhl~vVDPgVGt~ 74 (258)
T PF01887_consen 27 PDARIVDITHEIPPFDIRQAAFILAQAYPYFPKGTVHLAVVDPGVGTE 74 (258)
T ss_dssp TTSEEEEEES-S-TT-HHHHHHHHHHHHGGS-TTEEEEEE--TTTTSS
T ss_pred cCCeEEEeeCCCCCCCHHHHHHHHHHHHhhCCCCCEEEEEECCCCCCC
Confidence 667777778877788888899999999999999886443 35544433
No 290
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=33.06 E-value=58 Score=21.18 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=25.3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEE
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKV 42 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l 42 (114)
|.++.. +=-++++++...-|+++..-|.++||.
T Consensus 81 ~~vVi~-v~~~i~~~~leaTL~QaA~nL~s~GR~ 113 (145)
T PF10726_consen 81 DQVVIA-VPPDITPEALEATLEQAASNLFSGGRS 113 (145)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhccccCcc
Confidence 444443 335789999999999999999998774
No 291
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=32.90 E-value=47 Score=19.68 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHhCCCC----cEEEEEe
Q 033647 20 WSEEACVKILKNCYEALPED----GKVIVVD 46 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~pg----g~l~i~e 46 (114)
.+|+++..+++.+.+++..| |.+++.+
T Consensus 62 v~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~ 92 (102)
T PF00543_consen 62 VPDEDVEEIVEAISEAARTGEPGDGKIFVSP 92 (102)
T ss_dssp EEGGGHHHHHHHHHHHH-SSSTTSEEEEEEE
T ss_pred ECHHhHHHHHHHHHHhccCCCCCCEEEEEEE
Confidence 36677888888888876543 8888865
No 292
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=32.82 E-value=26 Score=15.59 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.0
Q ss_pred CCCCcEEEEEee
Q 033647 36 LPEDGKVIVVDC 47 (114)
Q Consensus 36 L~pgg~l~i~e~ 47 (114)
+.++|.+++.|.
T Consensus 9 v~~~g~i~VaD~ 20 (28)
T PF01436_consen 9 VDSDGNIYVADS 20 (28)
T ss_dssp EETTSEEEEEEC
T ss_pred EeCCCCEEEEEC
Confidence 347889999883
No 293
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=32.77 E-value=90 Score=24.43 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=34.6
Q ss_pred ceEEEeccccccCC-hHHH-------HHHHHHHHHhCCCCcEEEEEeee--cCCCC
Q 033647 8 AEAIFMKWICHNWS-EEAC-------VKILKNCYEALPEDGKVIVVDCI--LPVLP 53 (114)
Q Consensus 8 ~D~vl~~~vlh~~~-d~~~-------~~lL~~~~~aL~pgg~l~i~e~~--~~~~~ 53 (114)
.|+++....+|++- |+++ ...+..+.+.|+|||+.+.+-.. .+..+
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGR 170 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCC
Confidence 49999999998854 4432 34578899999999999888774 55554
No 294
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=32.65 E-value=74 Score=22.41 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=25.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
.|++++= -..++....+..+.+.|+|||.+++ |.++-
T Consensus 157 fD~iFiD-----adK~~Y~~y~~~~l~ll~~GGviv~-DNvl~ 193 (247)
T PLN02589 157 FDFIFVD-----ADKDNYINYHKRLIDLVKVGGVIGY-DNTLW 193 (247)
T ss_pred ccEEEec-----CCHHHhHHHHHHHHHhcCCCeEEEE-cCCCC
Confidence 4665543 3355567788888899999998655 66543
No 295
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.55 E-value=59 Score=17.36 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.3
Q ss_pred ccccCChHHHHHHHHHHHHh
Q 033647 16 ICHNWSEEACVKILKNCYEA 35 (114)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~a 35 (114)
+++++++++..++|+.+++.
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 56788999999999998886
No 296
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.40 E-value=64 Score=18.05 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 033647 79 MTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (114)
.+.+|+...|+.-||..++..
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEee
Confidence 357899999999999988753
No 297
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=32.31 E-value=47 Score=24.79 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.++|++.+++++||++++-...
T Consensus 242 nE~evE~~~q~~G~~IVrPEtl 263 (368)
T COG4421 242 NEEEVERLLQRSGLTIVRPETL 263 (368)
T ss_pred CHHHHHHHHHhcCcEEEechhc
Confidence 6789999999999999875443
No 298
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=32.16 E-value=62 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=11.3
Q ss_pred HHHcCCceeEEEEc
Q 033647 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
-++|||.+.+++|-
T Consensus 47 Y~~aGf~VtRiRP~ 60 (63)
T PHA00457 47 YVPAGFVVTRIRPE 60 (63)
T ss_pred hhccCcEEEEeccc
Confidence 34799999999874
No 299
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=32.13 E-value=21 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=24.5
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEE
Q 033647 13 MKWICHNWSEEACVKILKNCYEALPEDGKV 42 (114)
Q Consensus 13 ~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l 42 (114)
+..-|||.....+..|.++++++|..|..+
T Consensus 63 MTGHLHHiEPKRVKvIVeEv~qaltegklL 92 (299)
T PRK13245 63 MTGHLHHLEPKRVKIIVEEVRQALTEGKLL 92 (299)
T ss_pred eeccccccChhhhhHHHHHHHHHHhhhhHH
Confidence 445589999988888999999999988543
No 300
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=32.05 E-value=31 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEee
Q 033647 25 CVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
....|..++..|.|||.|++-|+
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESST
T ss_pred HHHHHHHHHhhcCCCeEEEEeCC
Confidence 67889999999999999988443
No 301
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=31.85 E-value=70 Score=23.53 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=12.8
Q ss_pred ecCHHHHHHHHHHcC-Ccee
Q 033647 78 EMTEQDFKTLAKAAG-FQGF 96 (114)
Q Consensus 78 ~rt~~e~~~ll~~aG-f~~~ 96 (114)
.++.+|+++.+++.| |++.
T Consensus 230 ~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 230 FPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp ---HHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHhcCCCEEEE
Confidence 568999999999777 5443
No 302
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=31.81 E-value=1.1e+02 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCcEEEEEeeec
Q 033647 27 KILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 27 ~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
.-+....++|++||+++++-...
T Consensus 240 ~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hhHHHHHHHHhcCCEEEEECCCC
Confidence 34566677899999999987663
No 303
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=31.77 E-value=1.1e+02 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=30.3
Q ss_pred CcEEEEEeee-cCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCcee
Q 033647 39 DGKVIVVDCI-LPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 39 gg~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
+|.|+++|-+ .|++ .++++......-..-...+.+-++.|+.+.|+...
T Consensus 202 ~g~ivL~DEi~TPDs---------~R~W~~~~~~~g~~~~~lDK~~~R~~l~~~~~~~~ 251 (279)
T cd01414 202 NGEIILIDEVLTPDS---------SRFWPADSYEPGKEQPSFDKQFVRDWLEASGWDKQ 251 (279)
T ss_pred CCcEEEEEecCCCCc---------ceeeeccccccCCCccccChHHHHHHHHhcCCCcc
Confidence 5788888888 4443 23444432100001136788999999999998854
No 304
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.54 E-value=1.2e+02 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=33.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVL 52 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~ 52 (114)
+|++++=-.=-+.-|++.-.=++++.+.++|.-.++++|...+.+
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 377776554333346666666888999999999999999988765
No 305
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=31.52 E-value=1.5e+02 Score=23.73 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=37.0
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPD 54 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~ 54 (114)
|-|+-..+=.-+++++...+.+++.+.|..+-.+++.|...+.++.
T Consensus 97 d~i~Wg~vN~p~~~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~ 142 (561)
T PTZ00311 97 DDIWWGKVNIPLSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPK 142 (561)
T ss_pred cccccCccCccCCHHHHHHHHHHHHHHHhcCCCEEEEeeeeecCcc
Confidence 4555555555678888889999999999888889999999887765
No 306
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.43 E-value=59 Score=21.15 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 033647 82 QDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~ 100 (114)
.+|.+.+++.||++..+.+
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~~ 58 (149)
T COG3019 40 DEWAQHMKANGFEVKVVET 58 (149)
T ss_pred HHHHHHHHhCCcEEEEeec
Confidence 6999999999999876553
No 307
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=30.95 E-value=1.7e+02 Score=20.81 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=31.7
Q ss_pred EEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEE
Q 033647 41 KVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 41 ~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
-|++.|............++....-...++-.+.+|..|+.++.+++|+ +|=.-+.+
T Consensus 46 ElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSI 102 (256)
T COG0107 46 ELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSI 102 (256)
T ss_pred eEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeee
Confidence 3666676655444333222222222222222467899999999999997 66444443
No 308
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=30.72 E-value=1.2e+02 Score=24.64 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=28.4
Q ss_pred ccCceecCHHHHHHHHHHcCCceeEEEEcCCcee
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
..-|...+.+++...|.+.||+.++....+|.++
T Consensus 158 l~~G~~i~~~~l~~~Lv~~gY~r~~~v~~~G~F~ 191 (655)
T TIGR00631 158 LEVGKEIDRRELLRRLVELQYERNDVDFQRGTFR 191 (655)
T ss_pred EeCCCCcCHHHHHHHHHHcCCcccCccCCCceEE
Confidence 3568889999999999999999988877776554
No 309
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=30.63 E-value=1.7e+02 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEee
Q 033647 25 CVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
..+.++++++.|+++|++++.=.
T Consensus 567 ~~~a~~~~rEll~ddg~lv~y~a 589 (875)
T COG1743 567 FREAFQAVRELLKDDGRLVTYYA 589 (875)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEe
Confidence 35678888888999999877543
No 310
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=30.44 E-value=1.4e+02 Score=24.23 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCcceEEEecccccc----CC-hHH-HHHHHHHHHHhCCCCcEEEEEeee
Q 033647 5 IPKAEAIFMKWICHN----WS-EEA-CVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 5 ~p~~D~vl~~~vlh~----~~-d~~-~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
+|.+|+.++-....+ .+ .++ ..++.+.+.++++.||+++|-=+.
T Consensus 362 ~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~fa 411 (630)
T TIGR03675 362 FPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFA 411 (630)
T ss_pred CCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 355799998766543 22 222 456778888899999999886543
No 311
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=30.42 E-value=62 Score=18.53 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCCCC-cEEEEEe
Q 033647 22 EEACVKILKNCYEALPED-GKVIVVD 46 (114)
Q Consensus 22 d~~~~~lL~~~~~aL~pg-g~l~i~e 46 (114)
+.....+.+.+.+||..| |.|-+.|
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~l~LtD 44 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGVLTLTD 44 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 334568888899999998 7776654
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=30.32 E-value=65 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCcEEEEEee
Q 033647 26 VKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
...++.+.+.|+++|+++++..
T Consensus 286 ~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 286 PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred hHHHHHHHHHhccCCEEEEEcC
Confidence 4577888899999999998854
No 313
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=30.08 E-value=67 Score=28.83 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCce----eEEEEcCCceeEEEEEeCC
Q 033647 83 DFKTLAKAAGFQG----FKVVCSAFNTYIMEFLKNP 114 (114)
Q Consensus 83 e~~~ll~~aGf~~----~~~~~~~~~~~~ie~~~~~ 114 (114)
=++.+++.+|+.+ ++|.++.++..+||+.||.
T Consensus 1568 lf~~if~~~gLd~~lfPYrV~aT~pGcGVIEviPn~ 1603 (1803)
T KOG0902|consen 1568 LFKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIPNS 1603 (1803)
T ss_pred HHHHHHHHcCCceEEeeeeeeccCCCCceEEeCCCC
Confidence 3567788999885 5788888999999999873
No 314
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=29.89 E-value=78 Score=23.57 Aligned_cols=39 Identities=0% Similarity=0.017 Sum_probs=27.1
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 5 IPKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 5 ~p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.++.|+|+-...+-.-+- ..-+-+...++|+||+.++-.
T Consensus 242 ~~~~DivITTAlIPGrpA--P~Lvt~~mv~sMkpGSViVDl 280 (356)
T COG3288 242 AKEVDIVITTALIPGRPA--PKLVTAEMVASMKPGSVIVDL 280 (356)
T ss_pred hcCCCEEEEecccCCCCC--chhhHHHHHHhcCCCcEEEEe
Confidence 455788888887754443 234457788999999987543
No 315
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=29.78 E-value=76 Score=24.07 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 033647 4 SIPK-AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVI 43 (114)
Q Consensus 4 ~~p~-~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~ 43 (114)
.+|+ +|+++..-+=-.+-.|.-.+-.-.+++.|+|.|.++
T Consensus 239 eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 239 ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 3677 698886654433344422233345678999988764
No 316
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=29.62 E-value=64 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.5
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEEcC
Q 033647 76 GREMTEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
+..++.+|+.++++++||..+...+..
T Consensus 334 ~~~~~~eel~~~i~~aG~~p~~Rdt~Y 360 (370)
T COG1060 334 GDWRSVEELAALIKEAGRIPVERDTLY 360 (370)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeecccc
Confidence 346789999999999999998876654
No 317
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=29.44 E-value=1.8e+02 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCcEEEEEeeec
Q 033647 27 KILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 27 ~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
..++...++|+++|+++.+....
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 245 PALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEcccC
Confidence 46677788899999998876654
No 318
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=29.23 E-value=1.3e+02 Score=22.96 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=29.5
Q ss_pred eEEEeccc----cccCChHHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 033647 9 EAIFMKWI----CHNWSEEACVKILKNCYEALPEDGKVIVVDCILP 50 (114)
Q Consensus 9 D~vl~~~v----lh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~ 50 (114)
|+.+.-.. .|.-.++.-..+.+.+.+++.+||.++|--+-++
T Consensus 182 DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~g 227 (427)
T COG1236 182 DVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALG 227 (427)
T ss_pred cEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 88887653 4433344445577888899999999999766554
No 319
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=29.15 E-value=94 Score=18.79 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCCcEEEEEee
Q 033647 27 KILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 27 ~lL~~~~~aL~pgg~l~i~e~ 47 (114)
.+++++.+.|+||+..++...
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEe
Confidence 579999999999988777653
No 320
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.76 E-value=1.1e+02 Score=20.68 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=27.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|.|+...++ +=|+--..+...|...|+|.|+-++.
T Consensus 104 FDiIlaADCl--FfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 104 FDIILAADCL--FFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred ccEEEeccch--hHHHHHHHHHHHHHHHhCcccceeEe
Confidence 4888888876 34555667788888899999886663
No 321
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=28.62 E-value=1.1e+02 Score=21.54 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 033647 80 TEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~ 98 (114)
+.++..+.+-++|-+.++.
T Consensus 148 ~~d~~~e~aieaGAedv~~ 166 (238)
T TIGR01033 148 DEEDLMEAAIEAGAEDIDV 166 (238)
T ss_pred CHHHHHHHHHhCCCceeec
Confidence 5678888888899888754
No 322
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=28.55 E-value=45 Score=17.88 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHcCCcee
Q 033647 79 MTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (114)
--.++|..+|..+|.+..
T Consensus 25 glp~ew~~~l~~~~it~~ 42 (59)
T PF00786_consen 25 GLPPEWEKLLKSSGITEE 42 (59)
T ss_dssp S--HHHHHHHHSCTTSHH
T ss_pred cCCHHHHhhccccCCCHH
Confidence 457899999999988753
No 323
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=28.13 E-value=72 Score=17.44 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=18.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 18 HNWSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 18 h~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
...+.+++.++|++ -.+.|.++|=...
T Consensus 4 g~isr~~Ae~~L~~----~~~~G~FLvR~s~ 30 (77)
T PF00017_consen 4 GFISRQEAERLLMQ----GKPDGTFLVRPSS 30 (77)
T ss_dssp ESSHHHHHHHHHHT----TSSTTEEEEEEES
T ss_pred CCCCHHHHHHHHHh----cCCCCeEEEEecc
Confidence 34566778888886 4567777775543
No 324
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.05 E-value=1.1e+02 Score=16.46 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCceeEEEEcCC
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
.+++..|+++.|++. .+....+
T Consensus 38 ~~~i~~~~~~~G~~~-~~~~~~~ 59 (67)
T cd03421 38 KENVSRFAESRGYEV-SVEEKGG 59 (67)
T ss_pred HHHHHHHHHHcCCEE-EEEecCC
Confidence 456788888999998 5555544
No 325
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=28.04 E-value=33 Score=26.41 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCc-ceEEEeccccccCCh-HHHHHHHHHHHHhCCCCcEE
Q 033647 5 IPK-AEAIFMKWICHNWSE-EACVKILKNCYEALPEDGKV 42 (114)
Q Consensus 5 ~p~-~D~vl~~~vlh~~~d-~~~~~lL~~~~~aL~pgg~l 42 (114)
+|+ +|+++.-.+= .+-+ |-..+.|....+-|+|||.+
T Consensus 255 lpekvDIIVSElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 255 LPEKVDIIVSELLG-SFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp HSS-EEEEEE---B-TTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred CCCceeEEEEeccC-CccccccCHHHHHHHHhhcCCCCEE
Confidence 354 7988877653 3333 23456677888899999765
No 326
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=28.04 E-value=1.4e+02 Score=17.87 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=27.1
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCC-CcEEEEEee
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPE-DGKVIVVDC 47 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~ 47 (114)
.++++++.+. +.++++...+++++.+.+.. ||.+.-++.
T Consensus 3 ~YE~~~il~~--~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~ 42 (108)
T PRK00453 3 KYEIVFILRP--DLSEEQVKALVERFKGVITENGGTIHKVED 42 (108)
T ss_pred ceeEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 3555555443 35888899999999998876 666666553
No 327
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.94 E-value=89 Score=18.24 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.9
Q ss_pred ccCceecCHHHHHHHHHHcCCceeEE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
..+|.++....+.+++++.|++..-.
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 35788888999999999999988755
No 328
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.93 E-value=2.6e+02 Score=20.95 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=45.1
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc-hhhhhhhhcchhcccc----ccCceecCHHHHHHHH-
Q 033647 15 WICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTS-LASKQVIQLDCFMLAY----TIGGREMTEQDFKTLA- 88 (114)
Q Consensus 15 ~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~g~~rt~~e~~~ll- 88 (114)
+..--|+|++ ..-++++.+++...|..++++.... .+... ........+.-..... ...-++.|.+|+.++.
T Consensus 72 ~~~~l~~d~~-i~~~~~vt~avH~~G~~i~iQL~H~-Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~ 149 (363)
T COG1902 72 GQPGLWSDAQ-IPGLKRLTEAVHAHGAKIFIQLWHA-GRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIE 149 (363)
T ss_pred CCCccCChhH-hHHHHHHHHHHHhcCCeEEEEeccC-cccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHH
Confidence 3344456665 7889999999987555555554322 21100 0000000011111100 1224566888777654
Q ss_pred ---------HHcCCceeEEEEcCC
Q 033647 89 ---------KAAGFQGFKVVCSAF 103 (114)
Q Consensus 89 ---------~~aGf~~~~~~~~~~ 103 (114)
++|||..++++---+
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~AhG 173 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAHG 173 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeeccc
Confidence 468999999986543
No 329
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=27.81 E-value=65 Score=17.67 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.3
Q ss_pred cCHHHHHHHHHHcC
Q 033647 79 MTEQDFKTLAKAAG 92 (114)
Q Consensus 79 rt~~e~~~ll~~aG 92 (114)
++.++|.+++++.|
T Consensus 15 k~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 15 KTLDEWLALAREGG 28 (61)
T ss_pred cCHHHHHHHHHHhC
Confidence 67888888888874
No 330
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=27.69 E-value=1.7e+02 Score=18.59 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEeeecCCC--------------CCC--chhhhhhhhcchhccccccCceecCHHH
Q 033647 20 WSEEACVKILKNCYEALPEDGKVIVVDCILPVL--------------PDT--SLASKQVIQLDCFMLAYTIGGREMTEQD 83 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (114)
++.+++..+|.+....|..-|.-++.-.-+... +.. +... .....++..- ...++..-|.+|
T Consensus 11 L~~~ea~~FL~~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lg-l~~l~~f~W~-lalGd~~Ls~eE 88 (141)
T PF12419_consen 11 LTTEEAYDFLTEAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLG-LDQLLDFDWE-LALGDEELSEEE 88 (141)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccC-hHHHhcceEE-EEECCEECCHHH
Confidence 688899999999888887666554443221110 000 0000 1223333333 246788999999
Q ss_pred HHHHHHHcC
Q 033647 84 FKTLAKAAG 92 (114)
Q Consensus 84 ~~~ll~~aG 92 (114)
+.+++++..
T Consensus 89 f~~L~~~~~ 97 (141)
T PF12419_consen 89 FEQLVEQKR 97 (141)
T ss_pred HHHHHHcCC
Confidence 999998654
No 331
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.57 E-value=79 Score=15.18 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHHcCCce
Q 033647 79 MTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~ 95 (114)
.+.+++++||++.|...
T Consensus 4 Ws~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 46789999999999654
No 332
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=27.31 E-value=1.2e+02 Score=16.82 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHhCCCC-cEEEEEeee
Q 033647 20 WSEEACVKILKNCYEALPED-GKVIVVDCI 48 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~pg-g~l~i~e~~ 48 (114)
.+..+..++++++.+.+.|+ +.+.+....
T Consensus 39 ~~~~~~~~l~~~l~~~i~~~~d~i~i~~l~ 68 (78)
T PF09827_consen 39 LTNAELRKLRRELEKLIDPDEDSIRIYPLC 68 (78)
T ss_dssp E-HHHHHHHHHHHHHHSCTTTCEEEEEEEE
T ss_pred cCHHHHHHHHHHHHhhCCCCCCEEEEEEeC
Confidence 46677889999999999998 898887643
No 333
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=27.25 E-value=2e+02 Score=19.42 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=18.2
Q ss_pred ccCceecCHHHHHHHHHHcCCceeE
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
..+|..++.+++.++++ +|...+-
T Consensus 193 ia~GGi~~~~di~~~~~-~Gadgv~ 216 (230)
T TIGR00007 193 IASGGVSSIDDLIALKK-LGVYGVI 216 (230)
T ss_pred EEeCCCCCHHHHHHHHH-CCCCEEE
Confidence 46788899999998775 7866543
No 334
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=27.02 E-value=70 Score=15.56 Aligned_cols=17 Identities=6% Similarity=0.108 Sum_probs=12.8
Q ss_pred cccccCChHHHHHHHHH
Q 033647 15 WICHNWSEEACVKILKN 31 (114)
Q Consensus 15 ~vlh~~~d~~~~~lL~~ 31 (114)
+|+++++.+++..|+.-
T Consensus 17 ~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLL 33 (36)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 36777899988888753
No 335
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.97 E-value=63 Score=16.68 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCce
Q 033647 81 EQDFKTLAKAAGFQG 95 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~ 95 (114)
.++..+.|+++||+.
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 778999999999965
No 336
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.91 E-value=1.1e+02 Score=16.21 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=23.2
Q ss_pred cccccCChHHHHHHHHHHHHhCC------CCcEEEEEeee
Q 033647 15 WICHNWSEEACVKILKNCYEALP------EDGKVIVVDCI 48 (114)
Q Consensus 15 ~vlh~~~d~~~~~lL~~~~~aL~------pgg~l~i~e~~ 48 (114)
.++...++++..++.+.+.+++. +....++++.+
T Consensus 7 ~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev 46 (60)
T PRK02289 7 DLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDM 46 (60)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEe
Confidence 34456799999999999888764 34445554444
No 337
>PRK05066 arginine repressor; Provisional
Probab=26.75 E-value=49 Score=21.68 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.1
Q ss_pred cCceecCHHHHHHHHHHcCCc
Q 033647 74 IGGREMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~ 94 (114)
.+....|.+|+.+.|++.||.
T Consensus 19 ~~~~I~tQeeL~~~L~~~Gi~ 39 (156)
T PRK05066 19 KEEKFGSQGEIVTALQEQGFD 39 (156)
T ss_pred hhCCCCCHHHHHHHHHHCCCC
Confidence 445677888999999999988
No 338
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.70 E-value=50 Score=15.42 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=8.4
Q ss_pred HHHHHHHHHc---CCce
Q 033647 82 QDFKTLAKAA---GFQG 95 (114)
Q Consensus 82 ~e~~~ll~~a---Gf~~ 95 (114)
+||.+++.+| |++.
T Consensus 3 ~EW~~Li~eA~~~Gls~ 19 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSK 19 (30)
T ss_dssp HHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 5888888755 6554
No 339
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=26.63 E-value=1.5e+02 Score=19.08 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=23.8
Q ss_pred eEEEeccccccC-----ChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 9 EAIFMKWICHNW-----SEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 9 D~vl~~~vlh~~-----~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
|+.++.++-.+. +-++..+...++.+.++++|.+++.
T Consensus 73 ~i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n 114 (188)
T PF08245_consen 73 DIAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLN 114 (188)
T ss_dssp SEEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEE
T ss_pred heeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEec
Confidence 778888877553 2355666777788889999988774
No 340
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=26.21 E-value=1.7e+02 Score=18.10 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 23 EACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 23 ~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
+.-.++++++.++++..|.+..+|.-.
T Consensus 34 ~~~Lk~~~~~A~~vkG~gT~~~vdCgd 60 (112)
T cd03067 34 EALLKLLSDVAQAVKGQGTIAWIDCGD 60 (112)
T ss_pred HHHHHHHHHHHHHhcCceeEEEEecCC
Confidence 445778999999999999999999764
No 341
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=26.18 E-value=1.1e+02 Score=16.00 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHcCCceeEE
Q 033647 79 MTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~ 98 (114)
.+.++..++|+++||.....
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~ 28 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVV 28 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEE
Confidence 67899999999999965433
No 342
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=25.84 E-value=1.3e+02 Score=21.34 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=15.3
Q ss_pred ecCHHHHHHHHHHcCCceeEEE
Q 033647 78 EMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..+++++.+.+-+||-..+...
T Consensus 146 ~~~ed~l~e~~ieagaeDv~~~ 167 (241)
T COG0217 146 EIDEDELLEAAIEAGAEDVEED 167 (241)
T ss_pred CCCHHHHHHHHHHCCchhhhcC
Confidence 3577888888878887765444
No 343
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=25.84 E-value=1.4e+02 Score=18.52 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHhCC---C-CcEEEEEe
Q 033647 20 WSEEACVKILKNCYEALP---E-DGKVIVVD 46 (114)
Q Consensus 20 ~~d~~~~~lL~~~~~aL~---p-gg~l~i~e 46 (114)
.+|++...++..+.++++ + +|++++.+
T Consensus 65 V~de~ve~vie~I~~~a~tG~~GDGkIFV~~ 95 (112)
T COG0347 65 VSDEDVDEVIEAIKKAARTGKIGDGKIFVSP 95 (112)
T ss_pred EChHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 468888888888888887 3 38888765
No 344
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=25.74 E-value=63 Score=16.23 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCceeE
Q 033647 83 DFKTLAKAAGFQGFK 97 (114)
Q Consensus 83 e~~~ll~~aGf~~~~ 97 (114)
+..+-+..|||..++
T Consensus 2 e~a~Rl~~AgF~~i~ 16 (41)
T PF11590_consen 2 ETAERLRSAGFATIG 16 (41)
T ss_dssp HHHHHHHHTT-EEEC
T ss_pred hHHHHHHHHhHHHhc
Confidence 567788999998753
No 345
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=25.65 E-value=1.6e+02 Score=21.44 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCcEEEEEeee-cCCCCCCchhhhhhhhcchhccccccCc---eecCHHHHHHHHHHcCCc
Q 033647 38 EDGKVIVVDCI-LPVLPDTSLASKQVIQLDCFMLAYTIGG---REMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 38 pgg~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~rt~~e~~~ll~~aGf~ 94 (114)
.+|.++++|-+ .|++ .++++.... ..| ...+.+-++.|+++.|+.
T Consensus 215 ~~g~iiL~DEI~TPDs---------~R~Wd~~~~---e~g~~~~~lDKq~~R~~l~~~~~~ 263 (296)
T PRK13961 215 EDGTLTLMDEVLTPDS---------SRFWPADSY---QPGTSQPSFDKQFVRDWLETSGWD 263 (296)
T ss_pred CCCcEEEEeeccCCCc---------ceecccccc---ccCCcccccCHHHHHHHHHhcCCC
Confidence 35788888877 4443 234554322 112 246788899999998986
No 346
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=25.56 E-value=1e+02 Score=21.94 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCC-CCcEEEEEeeecCCCCCCch-hhhhhh-hcchhccccccCceecCHHHH----HHHHHHcCCcee
Q 033647 24 ACVKILKNCYEALP-EDGKVIVVDCILPVLPDTSL-ASKQVI-QLDCFMLAYTIGGREMTEQDF----KTLAKAAGFQGF 96 (114)
Q Consensus 24 ~~~~lL~~~~~aL~-pgg~l~i~e~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~rt~~e~----~~ll~~aGf~~~ 96 (114)
++.+-+.++.++|+ |+|-.+++- ..+.+.. ..+++. ..+.... ...-.+.++.++| +.++..||.+..
T Consensus 15 ~ai~hi~ri~RvL~~~~Gh~LLvG----~~GsGr~sl~rLaa~i~~~~~~-~i~~~~~y~~~~f~~dLk~~~~~ag~~~~ 89 (268)
T PF12780_consen 15 EAIEHIARISRVLSQPRGHALLVG----VGGSGRQSLARLAAFICGYEVF-QIEITKGYSIKDFKEDLKKALQKAGIKGK 89 (268)
T ss_dssp HHHHHHHHHHHHHCSTTEEEEEEC----TTTSCHHHHHHHHHHHTTEEEE--TTTSTTTHHHHHHHHHHHHHHHHHCS-S
T ss_pred HHHHHHHHHHHHHcCCCCCeEEec----CCCccHHHHHHHHHHHhccceE-EEEeeCCcCHHHHHHHHHHHHHHHhccCC
Confidence 35556667777774 788887643 2222211 111211 2222222 1122344666555 566778998875
Q ss_pred EEE
Q 033647 97 KVV 99 (114)
Q Consensus 97 ~~~ 99 (114)
.+.
T Consensus 90 ~~v 92 (268)
T PF12780_consen 90 PTV 92 (268)
T ss_dssp -EE
T ss_pred CeE
Confidence 544
No 347
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=25.55 E-value=2.1e+02 Score=19.15 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEEE
Q 033647 33 YEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 33 ~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
...+.+|-+++|+|-++...................... ..---.|.. .+.+-+++.|+....+..
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~-v~vlvdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKY-VITVVDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEE-EEEEEECCc-ChHHHHHHcCCcEEEEEE
Confidence 346789999999998887654321110000111111100 000113443 567778888877665543
No 348
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=25.52 E-value=43 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
+-.++++++.+.|+|||.|+.+-+
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 357899999999999999877543
No 349
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=25.22 E-value=2.5e+02 Score=19.81 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=42.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+.++.--.++|..++.....+ -.+.+.|+.+|.-+| |.=...+. + ...++++.+.+++.+.
T Consensus 149 G~~F~GESMFs~~~nASKvAl-~~L~~~L~~~g~~li-D~Q~~t~H----------L-------~slGa~~i~R~~fl~~ 209 (233)
T PRK00301 149 GRAFFGESMFSRATDASKVAL-AALVEHLRRHGFKLI-DCQVLNPH----------L-------ASLGAREIPRAEFLAL 209 (233)
T ss_pred CCEEeecccccCCCChHHHHH-HHHHHHHHHCCceEE-EECCCCHH----------H-------HhcCCEEcCHHHHHHH
Confidence 356777788898888765544 445556777665433 43222111 1 1457899999999999
Q ss_pred HHHcC
Q 033647 88 AKAAG 92 (114)
Q Consensus 88 l~~aG 92 (114)
|+++-
T Consensus 210 L~~a~ 214 (233)
T PRK00301 210 LAQAL 214 (233)
T ss_pred HHHHH
Confidence 98763
No 350
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=25.13 E-value=95 Score=21.10 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 033647 80 TEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~ 98 (114)
.-++|.+.|+++||+....
T Consensus 29 A~~~Wn~~fe~~Gf~~a~~ 47 (197)
T cd04276 29 GVLYWNKAFEKAGFKNAII 47 (197)
T ss_pred HHHHHHHHHHhcCCCccEE
Confidence 3679999999999997643
No 351
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=25.10 E-value=86 Score=16.58 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.6
Q ss_pred cCHHHHHHHHHHcCCce
Q 033647 79 MTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~ 95 (114)
.+.+++.+||+..||..
T Consensus 4 w~~~~v~~WL~~~gl~~ 20 (66)
T PF07647_consen 4 WSPEDVAEWLKSLGLEQ 20 (66)
T ss_dssp HCHHHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHHHCCcHH
Confidence 45778888888888753
No 352
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=25.09 E-value=1.2e+02 Score=19.01 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=22.0
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIV 44 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i 44 (114)
..+|++++..+.+ .++ ...+++.+..+.||.++.
T Consensus 52 ~~y~~vi~P~~~~-~~~----~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 52 SGYKLVVLPDLYL-LSD----ATAAALRAYVENGGTLVA 85 (154)
T ss_pred ccCCEEEECchhc-CCH----HHHHHHHHHHHCCCEEEE
Confidence 3479999998875 455 334444555667996655
No 353
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=24.99 E-value=36 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=26.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhC-CCCcEEEEEeeec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEAL-PEDGKVIVVDCIL 49 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL-~pgg~l~i~e~~~ 49 (114)
+|+|++ |+++. -..+.++.++| +|||++.+.-+.+
T Consensus 114 ~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 114 FDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCH
Confidence 475543 77774 57889999999 8999998865544
No 354
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=24.80 E-value=80 Score=16.34 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.1
Q ss_pred HHHHHHcCCceeEEE
Q 033647 85 KTLAKAAGFQGFKVV 99 (114)
Q Consensus 85 ~~ll~~aGf~~~~~~ 99 (114)
..+|++.||.++.+-
T Consensus 24 ~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 24 HRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHCCCEEEEec
Confidence 678899999887664
No 355
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.76 E-value=81 Score=16.41 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.5
Q ss_pred cCHHHHHHHHHHcCCc
Q 033647 79 MTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~ 94 (114)
-+.+++.+.++++||+
T Consensus 47 ~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 47 TSIEKIIEAIEKAGYE 62 (62)
T ss_dssp SCHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHhCcC
Confidence 4678999999999984
No 356
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=24.72 E-value=57 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.136 Sum_probs=23.9
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCC
Q 033647 9 EAIFMKWICHNWSEEACVKILKNCYEALP 37 (114)
Q Consensus 9 D~vl~~~vlh~~~d~~~~~lL~~~~~aL~ 37 (114)
|+++..+++-++.-++..++.+.=+.+.+
T Consensus 107 d~vvi~svfv~~~a~d~~kiY~ynY~A~k 135 (170)
T COG1795 107 DVVVIVSVFVHPEAEDKRKIYQYNYGATK 135 (170)
T ss_pred CEEEEEEeEeCcccccHHHHHHHhHHHHH
Confidence 88999898888988888999887776544
No 357
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.65 E-value=1.2e+02 Score=16.08 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHcCCce
Q 033647 80 TEQDFKTLAKAAGFQG 95 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (114)
+.+...+.|+++||+.
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (66)
T cd04908 49 DPDKAKEALKEAGFAV 64 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 3668889999999985
No 358
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.45 E-value=79 Score=17.80 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 22 EEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 22 d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
|....+++-++-.++.+|+.++|-|
T Consensus 13 Dp~~kqlilnmd~sm~~~skfii~e 37 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSMQLGSKFIIEE 37 (71)
T ss_pred ChhHHHHhhhccccCCCCCCeeEEE
Confidence 4445778888888999999998865
No 359
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.32 E-value=1.4e+02 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=25.7
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 7 KAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 7 ~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.+|++++.+-=-++++.+.. .+.+.+..||++++.
T Consensus 234 d~d~LvI~~P~~~ls~~e~~----~Ldqfl~~GG~ll~~ 268 (552)
T TIGR03521 234 KFDLIVIAKPTEAFSEREKY----ILDQYIMNGGKALFL 268 (552)
T ss_pred CcCEEEEeCCCccCCHHHHH----HHHHHHHcCCeEEEE
Confidence 57999999876688886543 344467789998775
No 360
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=24.27 E-value=78 Score=20.64 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=20.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVI 43 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~ 43 (114)
+|++++..+ -..++++..+-+++..+.+.|+.+++
T Consensus 143 ADvIvlnK~-D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 143 ADVIVLNKI-DLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp -SEEEEE-G-GGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred cCEEEEecc-ccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 699999887 12334334356666677788888775
No 361
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=24.18 E-value=2.1e+02 Score=19.46 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHcCCceeEEEEc--CC-ceeEEEEEeC
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS--AF-NTYIMEFLKN 113 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~--~~-~~~~ie~~~~ 113 (114)
...++++||.+.||...+-.-+ .+ .+.++.|.+.
T Consensus 104 ~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 104 HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERG 140 (205)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeC
Confidence 5778999999999998764443 23 3557766654
No 362
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=24.13 E-value=1.5e+02 Score=20.78 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.0
Q ss_pred ecCHHHH-HHHHHHcCCceeEEEEcCC
Q 033647 78 EMTEQDF-KTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 78 ~rt~~e~-~~ll~~aGf~~~~~~~~~~ 103 (114)
..|-.|. +.+|++.|.+.+++..+.|
T Consensus 36 g~TGae~Ar~iL~~~gl~~V~Ve~~~G 62 (222)
T PF04298_consen 36 GMTGAEVARHILDRNGLSDVRVERVPG 62 (222)
T ss_pred CCCHHHHHHHHHHHCCCCCeeEEEeCC
Confidence 3456666 7889999999999999866
No 363
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=24.07 E-value=2.1e+02 Score=22.63 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=30.1
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC
Q 033647 16 ICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPD 54 (114)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~ 54 (114)
+=+-.+.++-..+++++.+.+..|-.+++++...+.++.
T Consensus 67 ~N~~~~~~~~~~~~~~~~~~~m~gr~myV~d~~~G~~~~ 105 (515)
T cd01919 67 LNRWLSEEDFEKAFNARFPGLMKGRTLFVVDFFMGPGSP 105 (515)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeceECCCCc
Confidence 334456677888889999999788889999999887543
No 364
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=24.06 E-value=99 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEe
Q 033647 25 CVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~e 46 (114)
-..+++.+.+.|+|||.++.+-
T Consensus 318 y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 318 YKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHcCCCeEEEEEe
Confidence 3456667889999999998755
No 365
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=23.98 E-value=70 Score=22.07 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=39.4
Q ss_pred ceEEEeccccccCC---h---HHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCH
Q 033647 8 AEAIFMKWICHNWS---E---EACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTE 81 (114)
Q Consensus 8 ~D~vl~~~vlh~~~---d---~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
.|+|+=+..+...+ | .....-+..+.+.|+|||.++|.-+ ..|.
T Consensus 137 fdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~ 186 (227)
T KOG1271|consen 137 FDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTK 186 (227)
T ss_pred eeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccH
Confidence 47777666554432 1 1112336677788889998887332 2446
Q ss_pred HHHHHHHHHcCCceeEEEEcC
Q 033647 82 QDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~ 102 (114)
+|+.+-++.-||....-+|.+
T Consensus 187 dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 187 DELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred HHHHHHHhcCCeEEEEeeccc
Confidence 666777776777776666654
No 366
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=23.97 E-value=72 Score=18.71 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCcEEEEEee
Q 033647 26 VKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 26 ~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
.+++++-.+.|.+|+.+++.+.
T Consensus 38 ~~v~~~y~~~l~~GavLlLk~V 59 (86)
T PF15072_consen 38 RKVLEEYGDELSPGAVLLLKDV 59 (86)
T ss_pred HHHHhhcCCccccCEEEEEeee
Confidence 5677777788999999999874
No 367
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=23.88 E-value=17 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=14.9
Q ss_pred ecCHHHHHHHHHHcCCceeE
Q 033647 78 EMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~ 97 (114)
.-+.+++.+..-++|-+.++
T Consensus 142 ~~~~d~~~e~aIe~GaeDve 161 (234)
T PF01709_consen 142 DLDEDELMEDAIEAGAEDVE 161 (234)
T ss_dssp CS-HHHHHHHHHHHTESEEE
T ss_pred CCChHHHHHHHHhCCCcEee
Confidence 45777888888888888876
No 368
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.82 E-value=2.2e+02 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=26.9
Q ss_pred ceEEEeccccc-cCChHHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 033647 8 AEAIFMKWICH-NWSEEACVKILKNCYEALPEDGKVIVVDCILPV 51 (114)
Q Consensus 8 ~D~vl~~~vlh-~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~ 51 (114)
||+|++.-+-- +-.+.+..+.++++.+.-+|+..+++.-++...
T Consensus 28 ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~ 72 (420)
T PRK14339 28 ADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASH 72 (420)
T ss_pred CCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCcccc
Confidence 89999877432 223334455555555445678888887765443
No 369
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.75 E-value=1.5e+02 Score=20.54 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.9
Q ss_pred ccCceecCHHHHHHHHHHcCCcee
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
..+|..++.+++.++++..|...+
T Consensus 201 ia~GGv~s~~d~~~~~~~~G~~gv 224 (253)
T PRK02083 201 IASGGAGNLEHFVEAFTEGGADAA 224 (253)
T ss_pred EEECCCCCHHHHHHHHHhCCccEE
Confidence 467888999999999887776543
No 370
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=23.64 E-value=1.5e+02 Score=17.47 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=19.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
+|++++-. .+.++. ..|..+...++.||.+++.=+-
T Consensus 12 ~~~~i~d~-~~g~~p----nal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 12 FDLLIFDA-FEGFDP----NALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp BSSEEEE--SS---H----HHHHHHHTTB-TT-EEEEEES-
T ss_pred cCEEEEEc-cCCCCH----HHHHHHhcceecCeEEEEEcCC
Confidence 35444433 344544 5677788899999999986443
No 371
>PRK00110 hypothetical protein; Validated
Probab=23.43 E-value=1.7e+02 Score=20.75 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 033647 80 TEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~ 98 (114)
+.+++.+..-+||-..++.
T Consensus 146 ~~d~~~e~aieaGaeDv~~ 164 (245)
T PRK00110 146 DEDELMEAALEAGAEDVET 164 (245)
T ss_pred CHHHHHHHHHhCCCCEeec
Confidence 4678888888999888654
No 372
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=23.17 E-value=1.3e+02 Score=22.82 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
+-..++..+.+.|+|||.++++-+.
T Consensus 314 dy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 314 DYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecC
Confidence 3578899999999999999886543
No 373
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=23.13 E-value=97 Score=16.74 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=12.4
Q ss_pred cCHHHHHHHHHHcCCce
Q 033647 79 MTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~ 95 (114)
.+.+++.++.+++||..
T Consensus 25 ~~~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF 41 (64)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 45777788888888764
No 374
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=23.07 E-value=1.3e+02 Score=22.54 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 22 EEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 22 d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
++--.+.|+.+.+.|++||++++.-+
T Consensus 286 ~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 286 DELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 34467889999999999999987543
No 375
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=23.05 E-value=92 Score=17.74 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=19.5
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEE
Q 033647 74 IGGREMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
..|..--.+.+..+|++.||+..++-.
T Consensus 11 gt~~~GlA~~~a~~L~~~Gf~v~~~~n 37 (90)
T PF13399_consen 11 GTGVSGLAARVADALRNRGFTVVEVGN 37 (90)
T ss_pred CcCCcCHHHHHHHHHHHCCCceeecCC
Confidence 334444567889999999999976643
No 376
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.76 E-value=85 Score=16.64 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHcCCce
Q 033647 80 TEQDFKTLAKAAGFQG 95 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (114)
..+...+.|+++||++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3568899999999963
No 377
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=22.52 E-value=1.1e+02 Score=22.62 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=24.7
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEE
Q 033647 74 IGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIME 109 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie 109 (114)
.+-..+|..+...+|+.+||..+ ....+...++|
T Consensus 91 ~hLFiyTKp~~~~lFk~~GF~~i--~~~~~~ivlmE 124 (352)
T COG3053 91 THLFIYTKPEYAALFKQCGFSEI--ASAENVIVLME 124 (352)
T ss_pred ceEEEEechhHHHHHHhCCceEe--eccCceEEEee
Confidence 44567899999999999999875 33344445555
No 378
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=22.52 E-value=1.6e+02 Score=20.85 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=27.4
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEEcCCceeEE
Q 033647 74 IGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIM 108 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 108 (114)
..|++.+.+|+..+|.+.|+...+-.-+.++..+.
T Consensus 99 ~~gk~f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~ 133 (246)
T PRK11611 99 PTGKEFMPREISLLLGEEGNPLSSQEVLEGGESLL 133 (246)
T ss_pred CCCcccCHHHHHHHHhccCCCcceeEEeCCCCEEE
Confidence 46899999999999999999887655555555544
No 379
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=22.47 E-value=2e+02 Score=21.14 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=24.7
Q ss_pred HHHHHHHHcCC----ceeEEEEcCCceeEEEEEeC
Q 033647 83 DFKTLAKAAGF----QGFKVVCSAFNTYIMEFLKN 113 (114)
Q Consensus 83 e~~~ll~~aGf----~~~~~~~~~~~~~~ie~~~~ 113 (114)
-...++++.|+ ...+|.++.....+||..++
T Consensus 76 lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~n 110 (311)
T cd05167 76 LFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVPN 110 (311)
T ss_pred HHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeCC
Confidence 45677788886 45689999889999999875
No 380
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.26 E-value=1.1e+02 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHcCCceeEEE
Q 033647 80 TEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~ 99 (114)
+.+.+..||++.|++...+.
T Consensus 63 ~v~~V~~wL~~~G~~~~~~~ 82 (143)
T PF09286_consen 63 DVAAVKSWLKSHGLTVVEVS 82 (143)
T ss_dssp HHHHHHHHHHHCT-EEEEEE
T ss_pred HHHHHHHHHHHcCCceeEEe
Confidence 46788999999999988743
No 381
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=22.23 E-value=2.2e+02 Score=22.50 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=32.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeee
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCI 48 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~ 48 (114)
+|+|++-.--..+.-.|..+.-..++..+.|+..++++|+-
T Consensus 232 advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 232 ADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred cceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 68888877665566667777778888899999999999873
No 382
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=22.22 E-value=43 Score=14.61 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHhCCCCcEE
Q 033647 30 KNCYEALPEDGKV 42 (114)
Q Consensus 30 ~~~~~aL~pgg~l 42 (114)
+++...|++||..
T Consensus 10 qhvasvlrsgg~~ 22 (26)
T PRK14755 10 QHVASVLRSGGXX 22 (26)
T ss_pred HHHHHHHHcCCcc
Confidence 4556677777754
No 383
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.08 E-value=1.1e+02 Score=22.10 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=20.5
Q ss_pred ecCHHHHHHHHHHcCCceeEEEEcC
Q 033647 78 EMTEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
..+.+++..++++|||..++..+..
T Consensus 282 ~~~~~~l~~~~~~~g~~~~~r~~~y 306 (309)
T TIGR00423 282 GLTVEELIEAIKDAGRVPAQRDTLY 306 (309)
T ss_pred CCCHHHHHHHHHHcCCCeeecCCCC
Confidence 3478999999999999998876553
No 384
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=1.7e+02 Score=20.57 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.9
Q ss_pred cchhccccccCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEEeCC
Q 033647 65 LDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLKNP 114 (114)
Q Consensus 65 ~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~~~~ 114 (114)
+|-....++..||.+..+---+-++++|++.+-+. ..+..++..+|++
T Consensus 9 fDrhitIFspeGrLyQVEYafkAin~~gltsVavr--gkDcavvvsqKkv 56 (246)
T KOG0182|consen 9 FDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVR--GKDCAVVVTQKKV 56 (246)
T ss_pred ccceEEEECCCceEEeeehHHHHhhcCCCceEEEc--CCceEEEEecccC
Confidence 33333334677888877766777888898887665 4466666666654
No 385
>PF05134 T2SL: Type II secretion system (T2SS), protein L; InterPro: IPR024230 The general secretion pathway of Gram-negative bacteria is responsible for extracellular secretion of a number of different proteins, including proteases and toxins. This pathway supports secretion of proteins across the cell envelope in two distinct steps, in which the second step, involving translocation through the outer membrane, is assisted by at least 13 different gene products. GspL is predicted to contain a large cytoplasmic domain and has been shown to interact with the autophosphorylating cytoplasmic membrane protein GspE. It is thought that the tri-molecular complex of GspL, GspE and GspM might be involved in regulating the opening and closing of the secretion pore and/or transducing energy to the site of outer membrane translocation []. This N-terminal domain is found in general secretion pathway protein L sequences from several Gram-negative bacteria. It is a cytoplasmic domain that shows structural homology with the superfamily of actin-like ATPases []. ; PDB: 2BH1_B 1YF5_L 1W97_L.
Probab=22.04 E-value=1.2e+02 Score=20.80 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-.+.|.++|+++|+....+.|-
T Consensus 113 ~l~~wl~~l~~~Gl~~~~v~Pd 134 (230)
T PF05134_consen 113 RLQRWLDALAAAGLEPDAVVPD 134 (230)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEG
T ss_pred HHHHHHHHHHHCCCcceEEEEc
Confidence 3558999999999999998873
No 386
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.92 E-value=1.7e+02 Score=20.75 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 19 NWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 19 ~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
+|.+ .......++.+-+++||.|++ |+++
T Consensus 157 adK~-nY~~y~e~~l~Llr~GGvi~~-DNvl 185 (237)
T KOG1663|consen 157 ADKD-NYSNYYERLLRLLRVGGVIVV-DNVL 185 (237)
T ss_pred cchH-HHHHHHHHHHhhcccccEEEE-eccc
Confidence 3444 356888999999999998876 6543
No 387
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=21.87 E-value=1.5e+02 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=17.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 19 NWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 19 ~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
.+++++ .+++++.|..||.|++-+.
T Consensus 66 ~~s~~e----~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 66 PLSDEE----IANLRRYLENGGFLLFDDR 90 (207)
T ss_pred CCCHHH----HHHHHHHHHcCCEEEEECC
Confidence 456643 5566778989999988544
No 388
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=21.85 E-value=2.9e+02 Score=19.28 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=19.2
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 033647 6 PKAEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVI 43 (114)
Q Consensus 6 p~~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~ 43 (114)
..+|+|+++ .|-+...++++++.+.+++|+.+.
T Consensus 44 ~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 44 EDADLVVLA-----VPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp GCCSEEEE------S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred cCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCcEEE
Confidence 346777664 355666777777777777665543
No 389
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=21.82 E-value=44 Score=16.05 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=13.2
Q ss_pred eecCHHHHHHHHHHcCC
Q 033647 77 REMTEQDFKTLAKAAGF 93 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf 93 (114)
+.|-.+.|+.+|-++|.
T Consensus 18 K~rv~kAWRNiFvqagI 34 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAGI 34 (34)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 35667899999998883
No 390
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=21.68 E-value=1.1e+02 Score=21.74 Aligned_cols=21 Identities=10% Similarity=0.393 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCcEEEEEee
Q 033647 27 KILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 27 ~lL~~~~~aL~pgg~l~i~e~ 47 (114)
..++.+.+.|++||+++++-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 467888889999999998764
No 391
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=21.61 E-value=1.4e+02 Score=20.68 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=22.4
Q ss_pred ceecCHHHH-HHHHHHcCCceeEEEEcCCc
Q 033647 76 GREMTEQDF-KTLAKAAGFQGFKVVCSAFN 104 (114)
Q Consensus 76 g~~rt~~e~-~~ll~~aGf~~~~~~~~~~~ 104 (114)
...+|-.|. +.+|.+.|+..+++..++|.
T Consensus 37 s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~ 66 (226)
T COG2738 37 SSGLTGAEVARMILDENGLYDVPVEEVPGT 66 (226)
T ss_pred cCCCcHHHHHHHHHhhcCCccceeeeecCC
Confidence 334566666 67888999999999988764
No 392
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=21.59 E-value=87 Score=13.20 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=7.8
Q ss_pred HHHHHHHHhCCC
Q 033647 27 KILKNCYEALPE 38 (114)
Q Consensus 27 ~lL~~~~~aL~p 38 (114)
.+|++|..+.-|
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 788888765433
No 393
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=21.58 E-value=2.2e+02 Score=18.03 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEe
Q 033647 21 SEEACVKILKNCYEALPEDGKVIVVD 46 (114)
Q Consensus 21 ~d~~~~~lL~~~~~aL~pgg~l~i~e 46 (114)
+.++..++-+++.+.|++|..+++.-
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G 29 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKG 29 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 44567788888888998887776643
No 394
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=21.56 E-value=1e+02 Score=24.15 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHHHHHcCCceeEEE
Q 033647 24 ACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 24 ~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
...-.|.+..+.|++.|.+.|++.-.-+.... ....+...-. ....+.....++..+|.+.|..++++.
T Consensus 82 ~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlv------erv~g~~~~~-~~~~~~~~I~~FE~~L~~~G~~IlKff 150 (493)
T TIGR03708 82 RERPPMWRFWRRLPPKGKIGIFFGSWYTRPLI------ERLEGRIDEA-KLDSHIEDINRFERMLADDGALILKFW 150 (493)
T ss_pred hcCcHHHHHHHhCCCCCeEEEEcCcccchhhH------HHhcCCCCHH-HHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35667888888888888888877544433211 0011110000 011223356688889999998888764
No 395
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=21.52 E-value=1.3e+02 Score=17.27 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHHhCCC-CcEEEEEee
Q 033647 19 NWSEEACVKILKNCYEALPE-DGKVIVVDC 47 (114)
Q Consensus 19 ~~~d~~~~~lL~~~~~aL~p-gg~l~i~e~ 47 (114)
+.++++..++++++.+.+.. ||.+.-++.
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~ 41 (92)
T PF01250_consen 12 DLSEEEIKKLIERVKKIIEKNGGVVRSVEN 41 (92)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 46888899999999998876 555555554
No 396
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=21.44 E-value=1.1e+02 Score=19.57 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCc
Q 033647 18 HNWSEEACVKILKNCYEALPEDG 40 (114)
Q Consensus 18 h~~~d~~~~~lL~~~~~aL~pgg 40 (114)
-|..|+++.+++..+.++|.+++
T Consensus 109 ~D~~~edv~kv~~~i~e~l~~~~ 131 (135)
T COG4273 109 SDCKDEDVEKVARTIKEALTIKL 131 (135)
T ss_pred CCCCHHHHHHHHHHHHHHhhhcc
Confidence 36789999999999999998864
No 397
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=21.37 E-value=1.2e+02 Score=16.86 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCceeEEE
Q 033647 82 QDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~ 99 (114)
...++-|+++||+.+++.
T Consensus 6 ~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 6 RKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHcCCCcceee
Confidence 356788999999999876
No 398
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.35 E-value=2.4e+02 Score=21.64 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=26.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
+|++++=-.=....|+....-|.++.+.+.|.+.+++++...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 466655443322345555666777777888888888877543
No 399
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.31 E-value=94 Score=19.41 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 23 EACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 23 ~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
++..+..+.+.+++..||+|+++-.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4456666777788889999999874
No 400
>smart00463 SMR Small MutS-related domain.
Probab=21.21 E-value=1.2e+02 Score=16.86 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=17.0
Q ss_pred cccCChHHHHHHHHHHHHhCCCC
Q 033647 17 CHNWSEEACVKILKNCYEALPED 39 (114)
Q Consensus 17 lh~~~d~~~~~lL~~~~~aL~pg 39 (114)
||.++-++|...|.+..+.+...
T Consensus 6 LHG~~~~eA~~~l~~~l~~~~~~ 28 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNARLK 28 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHc
Confidence 78899888888887766655443
No 401
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.18 E-value=2.3e+02 Score=17.99 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=45.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|++++-+-- .|.+....|-.+...|..+|.+.+.-+-..... .-+..++.+-
T Consensus 46 vD~vllWwR~---~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g------------------------~V~~~~I~ea 98 (127)
T PF11253_consen 46 VDVVLLWWRD---DDGDLVDALVDARTNLADDGVIWVLTPKAGRPG------------------------HVEPSDIREA 98 (127)
T ss_pred ccEEEEEEEC---CcchHHHHHHHHHhhhcCCCEEEEEccCCCCCC------------------------CCCHHHHHHH
Confidence 4777765542 344566777777888999999988543222111 1236677888
Q ss_pred HHHcCCceeEEEEcCC
Q 033647 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
...||+...+...+..
T Consensus 99 A~taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 99 APTAGLVQTKSCAVGD 114 (127)
T ss_pred HhhcCCeeeeeeccCC
Confidence 8888998888877754
No 402
>PRK12378 hypothetical protein; Provisional
Probab=21.12 E-value=84 Score=22.08 Aligned_cols=17 Identities=18% Similarity=0.643 Sum_probs=13.2
Q ss_pred CCCCcEEEEEeeecCCC
Q 033647 36 LPEDGKVIVVDCILPVL 52 (114)
Q Consensus 36 L~pgg~l~i~e~~~~~~ 52 (114)
..|||.-+|+|...++.
T Consensus 87 ygPgGvaiiVe~lTDN~ 103 (235)
T PRK12378 87 FGPNGVMVIVECLTDNV 103 (235)
T ss_pred EcCCCcEEEEEECCCCH
Confidence 35899999999877654
No 403
>PRK09902 hypothetical protein; Provisional
Probab=21.10 E-value=42 Score=23.29 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=23.4
Q ss_pred cccCChHHHHHHHHHHHHhCCC-------CcEEEEEeeecCCC
Q 033647 17 CHNWSEEACVKILKNCYEALPE-------DGKVIVVDCILPVL 52 (114)
Q Consensus 17 lh~~~d~~~~~lL~~~~~aL~p-------gg~l~i~e~~~~~~ 52 (114)
+..++......+++.|.+.++. .|.+.+.+..++..
T Consensus 122 ~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~ 164 (216)
T PRK09902 122 VSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTE 164 (216)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCC
Confidence 3333444556888888887763 47788877777643
No 404
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=21.08 E-value=1.4e+02 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEE
Q 033647 25 CVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 25 ~~~lL~~~~~aL~pgg~l~i~ 45 (114)
-..+++.+.+.|+|||.+++.
T Consensus 635 y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 635 HVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 567889999999999988663
No 405
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=21.04 E-value=1.8e+02 Score=16.53 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCcee
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTY 106 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
.+++..|.++.|.+........+.+.
T Consensus 49 ~~di~~~~~~~G~~~~~~~~~~g~~~ 74 (81)
T PRK00299 49 TRDIPSFCRFMDHELLAQETEQLPYR 74 (81)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCEEE
Confidence 45677888899999887655444333
No 406
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.94 E-value=2.8e+02 Score=18.94 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=19.1
Q ss_pred ccCceecCHHHHHHHHHHcCCcee
Q 033647 73 TIGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
..+|..++.++..++++..|...+
T Consensus 197 ia~GGi~~~~di~~~l~~~g~dgv 220 (243)
T cd04731 197 IASGGAGKPEHFVEAFEEGGADAA 220 (243)
T ss_pred EEeCCCCCHHHHHHHHHhCCCCEE
Confidence 567889999999999987676544
No 407
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=20.93 E-value=91 Score=18.17 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHcCC
Q 033647 80 TEQDFKTLAKAAGF 93 (114)
Q Consensus 80 t~~e~~~ll~~aGf 93 (114)
-.+++.+||.+.||
T Consensus 74 ~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 74 HVEEVKKWLLEKGF 87 (87)
T ss_pred cHHHHHHHHHHCcC
Confidence 47899999999998
No 408
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=20.89 E-value=1.7e+02 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 033647 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
+..++.++++++||+++-...-
T Consensus 171 ~~~~~~~~~~~~G~~v~~t~~~ 192 (260)
T COG0566 171 LARTLLELLKEAGFWVVATSLD 192 (260)
T ss_pred cHHHHHHHHHHcCeEEEEECCC
Confidence 5779999999999998865544
No 409
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=20.67 E-value=98 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.8
Q ss_pred cccCceecCHHHHHHHHHHcCCcee
Q 033647 72 YTIGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 72 ~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
++.+|..++..++.+++++.|....
T Consensus 157 hSD~Gsqy~s~~~~~~l~~~gI~~S 181 (262)
T PRK14702 157 LTDNGSCYRANETRQFARMLGLEPK 181 (262)
T ss_pred EcCCCcccchHHHHHHHHHcCCeec
Confidence 5788999999999999999997764
No 410
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=20.65 E-value=2.6e+02 Score=19.42 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEEe
Q 033647 81 EQDFKTLAKAAGFQGFKVVCSAFNTYIMEFLK 112 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~~ 112 (114)
.++..+.|.+.||+.++++.- ++...||+-+
T Consensus 187 v~~~E~~l~~~g~~~~rvr~~-~~~a~ie~~~ 217 (252)
T TIGR00268 187 VDEAEEVLRNAGVGQVRVRNY-DNLAVIEVPE 217 (252)
T ss_pred HHHHHHHHHHcCCCeEEEEec-CCeEEEEECH
Confidence 346678888899999999976 5688888743
No 411
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=20.59 E-value=2.1e+02 Score=21.60 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCc----eeEEEEcCCceeEEEEEeC
Q 033647 83 DFKTLAKAAGFQ----GFKVVCSAFNTYIMEFLKN 113 (114)
Q Consensus 83 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~~~ 113 (114)
-...+++++|+. .+++.+++....+||..++
T Consensus 121 lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~n 155 (366)
T cd05175 121 IMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRN 155 (366)
T ss_pred HHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCC
Confidence 457778889964 5688999999999999875
No 412
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.49 E-value=3.3e+02 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.9
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEEc
Q 033647 74 IGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.++...+..++..++++.+...+.+.+.
T Consensus 233 ~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 233 ADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred EeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 4566788899999999888777665543
No 413
>PF03434 DUF276: DUF276 ; InterPro: IPR005096 This family is specific to Borrelia burgdorferi (Lyme disease spirochete). The protein is encoded on extrachromosomal DNA and is of unknown function.
Probab=20.48 E-value=1.1e+02 Score=21.79 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEE
Q 033647 21 SEEACVKILKNCYEALPEDGKVI 43 (114)
Q Consensus 21 ~d~~~~~lL~~~~~aL~pgg~l~ 43 (114)
-+++....|...++.|+|||..+
T Consensus 53 ie~eii~~ln~lFsk~K~~g~Yw 75 (291)
T PF03434_consen 53 IEEEIINELNLLFSKMKPGGTYW 75 (291)
T ss_pred HHHHHHHHHHHHHHhcCCCchHH
Confidence 46678888999999999998753
No 414
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=20.41 E-value=2.6e+02 Score=19.49 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=30.6
Q ss_pred cEEEEEeeecCCCCCCchhhhhhhhcchhccccccCceecCHHHHHHH--HHHcCCcee
Q 033647 40 GKVIVVDCILPVLPDTSLASKQVIQLDCFMLAYTIGGREMTEQDFKTL--AKAAGFQGF 96 (114)
Q Consensus 40 g~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l--l~~aGf~~~ 96 (114)
|.+++.+.-.+-...++..+....+......-....|..++.+++.++ +.++|...+
T Consensus 164 ~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gv 222 (243)
T TIGR01919 164 SRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVA 222 (243)
T ss_pred CEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEE
Confidence 567776655444434432221122222111112457889999999987 446676654
No 415
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.37 E-value=1.8e+02 Score=16.42 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=20.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVV 45 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~ 45 (114)
.|++++..-+-+.+ ...+++++++.- |+..++++
T Consensus 44 ~d~iiid~~~~~~~---~~~~~~~i~~~~-~~~~ii~~ 77 (112)
T PF00072_consen 44 PDLIIIDLELPDGD---GLELLEQIRQIN-PSIPIIVV 77 (112)
T ss_dssp ESEEEEESSSSSSB---HHHHHHHHHHHT-TTSEEEEE
T ss_pred ceEEEEEeeecccc---cccccccccccc-ccccEEEe
Confidence 37777776554433 356666666554 66666654
No 416
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=20.14 E-value=63 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=25.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEeeec
Q 033647 8 AEAIFMKWICHNWSEEACVKILKNCYEALPEDGKVIVVDCIL 49 (114)
Q Consensus 8 ~D~vl~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~e~~~ 49 (114)
+|+|++=. ...+....+..+.+.|+|||.+++ |.+.
T Consensus 122 fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~-DN~l 157 (205)
T PF01596_consen 122 FDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIA-DNVL 157 (205)
T ss_dssp EEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEE-ETTT
T ss_pred eeEEEEcc-----cccchhhHHHHHhhhccCCeEEEE-cccc
Confidence 58776644 445567888888899999998866 5444
No 417
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=20.14 E-value=3.5e+02 Score=19.62 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=26.1
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEE-eeecCCCCC
Q 033647 13 MKWICHNWSEEACVKILKNCYEALPEDGKVIVV-DCILPVLPD 54 (114)
Q Consensus 13 ~~~vlh~~~d~~~~~lL~~~~~aL~pgg~l~i~-e~~~~~~~~ 54 (114)
.+.++.+-++ -..++.+.+.++-..|..|+++ |.+++.-|.
T Consensus 25 ~~t~~~dtpa-TL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPr 66 (337)
T KOG0805|consen 25 ASTVYNDTPA-TLDKAEKYIVEAASKGAELVLFPEAFIGGYPR 66 (337)
T ss_pred cccCCCCCHH-HHHHHHHHHHHHhcCCceEEEeehHhccCCCC
Confidence 3445544333 3577788888888889888776 555555443
No 418
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.12 E-value=1.3e+02 Score=15.90 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHHcCCcee
Q 033647 79 MTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (114)
...++..+.|+++||+..
T Consensus 52 ~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 52 MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHCCCeee
Confidence 345688999999999763
No 419
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.08 E-value=1e+02 Score=18.19 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=11.2
Q ss_pred cCceecCHHHHHHHHHHcCCc
Q 033647 74 IGGREMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~ 94 (114)
.|...++.+++.+-|++.||.
T Consensus 37 TNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 37 TNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp ES-SSS-HHHHHHHHHHTTTT
T ss_pred eCCCCCCHHHHHHHHHhcCcC
Confidence 344455566666666666665
No 420
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=20.04 E-value=1.6e+02 Score=16.56 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=16.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEee
Q 033647 19 NWSEEACVKILKNCYEALPEDGKVIVVDC 47 (114)
Q Consensus 19 ~~~d~~~~~lL~~~~~aL~pgg~l~i~e~ 47 (114)
.++.+++.++|++ .+.|.++|=+.
T Consensus 6 ~i~r~~Ae~~L~~-----~~~G~FLiR~s 29 (94)
T cd00173 6 PISREEAEELLKK-----KPDGTFLVRDS 29 (94)
T ss_pred CCCHHHHHHHHhc-----CCCceEEEEec
Confidence 4677888888886 45555555443
No 421
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=20.01 E-value=80 Score=21.08 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCCCcEE
Q 033647 23 EACVKILKNCYEALPEDGKV 42 (114)
Q Consensus 23 ~~~~~lL~~~~~aL~pgg~l 42 (114)
+...++++++.+++.|.|.+
T Consensus 224 ~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 224 PAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp HHHHHHHHHHHHHH-TTS-B
T ss_pred hHHHHHHHHhhhccCCccCC
Confidence 44678999999999998764
Done!