Your job contains 1 sequence.
>033648
MGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI
VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033648
(114 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195311 - symbol:AT1G09230 species:3702 "Arabi... 420 2.3e-39 1
UNIPROTKB|G3X691 - symbol:RBM41 "Uncharacterized protein"... 224 4.4e-18 1
UNIPROTKB|F1RXK8 - symbol:RBM41 "Uncharacterized protein"... 222 7.3e-18 1
UNIPROTKB|Q96IZ5 - symbol:RBM41 "RNA-binding protein 41" ... 220 1.2e-17 1
UNIPROTKB|F1NFC5 - symbol:RBM41 "Uncharacterized protein"... 208 1.5e-17 2
UNIPROTKB|F1PU87 - symbol:RBM41 "Uncharacterized protein"... 219 1.6e-17 1
UNIPROTKB|D4A6K1 - symbol:Rbm41 "Protein Rbm41" species:1... 205 6.1e-16 1
ZFIN|ZDB-GENE-060312-35 - symbol:rnpc3 "RNA-binding regio... 205 9.5e-16 1
UNIPROTKB|H0YEY9 - symbol:RNPC3 "RNA-binding protein 40" ... 197 9.8e-16 1
MGI|MGI:2444923 - symbol:Rbm41 "RNA binding motif protein... 196 5.5e-15 1
UNIPROTKB|F1MJQ8 - symbol:RNPC3 "RNA-binding protein 40" ... 197 7.3e-15 1
UNIPROTKB|Q3MHP0 - symbol:RNPC3 "RNA-binding protein 40" ... 197 7.3e-15 1
UNIPROTKB|A8K1C9 - symbol:RNPC3 "cDNA FLJ77710" species:9... 197 7.3e-15 1
UNIPROTKB|Q96LT9 - symbol:RNPC3 "RNA-binding protein 40" ... 197 7.3e-15 1
UNIPROTKB|F1S572 - symbol:LOC100522864 "Uncharacterized p... 197 7.3e-15 1
UNIPROTKB|F1PE39 - symbol:RNPC3 "Uncharacterized protein"... 196 9.5e-15 1
MGI|MGI:1914475 - symbol:Rnpc3 "RNA-binding region (RNP1,... 195 1.2e-14 1
RGD|1582776 - symbol:Rnpc3 "RNA-binding region (RNP1, RRM... 195 1.2e-14 1
UNIPROTKB|F1NVY1 - symbol:RNPC3 "Uncharacterized protein"... 188 6.2e-14 1
ZFIN|ZDB-GENE-041114-107 - symbol:rbm41 "RNA binding moti... 179 4.7e-13 1
DICTYBASE|DDB_G0270734 - symbol:DDB_G0270734 species:4468... 166 2.0e-11 1
POMBASE|SPBC4B4.07c - symbol:usp102 "U1 snRNP-associated ... 135 7.2e-09 1
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 111 2.5e-06 1
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 111 2.5e-06 1
GENEDB_PFALCIPARUM|MAL13P1.35 - symbol:MAL13P1.35 "u1 sma... 107 3.1e-05 1
UNIPROTKB|C0H5A4 - symbol:MAL13P1.35 "U1 small nuclear ri... 107 3.1e-05 1
ASPGD|ASPL0000027676 - symbol:AN5779 species:162425 "Emer... 99 3.8e-05 1
ZFIN|ZDB-GENE-060616-2 - symbol:snrpb2 "small nuclear rib... 100 5.2e-05 1
WB|WBGene00004385 - symbol:rnp-2 species:6239 "Caenorhabd... 98 6.7e-05 1
UNIPROTKB|G5E5Y0 - symbol:SNRPB2 "Uncharacterized protein... 97 0.00010 1
UNIPROTKB|E2R2A8 - symbol:SNRPB2 "Uncharacterized protein... 97 0.00011 1
UNIPROTKB|P08579 - symbol:SNRPB2 "U2 small nuclear ribonu... 97 0.00011 1
MGI|MGI:104805 - symbol:Snrpb2 "U2 small nuclear ribonucl... 97 0.00011 1
RGD|1310194 - symbol:Snrpb2 "small nuclear ribonucleoprot... 97 0.00011 1
ASPGD|ASPL0000053720 - symbol:AN0109 species:162425 "Emer... 98 0.00011 1
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 99 0.00011 1
UNIPROTKB|E1C0I4 - symbol:SNRPB2 "Uncharacterized protein... 97 0.00011 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 95 0.00011 1
UNIPROTKB|J9NSX4 - symbol:LOC100683259 "Uncharacterized p... 97 0.00011 1
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 97 0.00013 1
UNIPROTKB|J9NXJ9 - symbol:SNRPA "Uncharacterized protein"... 92 0.00016 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 95 0.00016 1
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 97 0.00017 1
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 97 0.00017 1
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 97 0.00017 1
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 97 0.00017 1
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 97 0.00018 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 100 0.00022 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 95 0.00027 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 94 0.00029 1
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 98 0.00030 1
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 92 0.00036 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 96 0.00043 1
POMBASE|SPBC29A3.07c - symbol:sab14 "U2 snRNP-associated ... 87 0.00045 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 87 0.00045 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 97 0.00059 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 95 0.00059 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 95 0.00059 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 90 0.00062 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 94 0.00069 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 93 0.00079 1
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 91 0.00079 1
TAIR|locus:2176222 - symbol:AT5G51300 species:3702 "Arabi... 96 0.0010 1
>TAIR|locus:2195311 [details] [associations]
symbol:AT1G09230 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 KO:K13157 OMA:KESEYES HSSP:P09012 EMBL:AY091076
EMBL:AY122947 IPI:IPI00518543 RefSeq:NP_172394.1 UniGene:At.21135
UniGene:At.66808 ProteinModelPortal:Q8RWV8 SMR:Q8RWV8 IntAct:Q8RWV8
EnsemblPlants:AT1G09230.1 GeneID:837443 KEGG:ath:AT1G09230
TAIR:At1g09230 HOGENOM:HOG000030409 InParanoid:Q8RWV8
PhylomeDB:Q8RWV8 ProtClustDB:CLSN2679239 ArrayExpress:Q8RWV8
Genevestigator:Q8RWV8 Uniprot:Q8RWV8
Length = 442
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 83/113 (73%), Positives = 93/113 (82%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIV 61
G+LPP++ILSLPMFKNYTAGNP+ VLYIKNLAK GS F S + AKS L V
Sbjct: 329 GRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGV 388
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+LMQEGRMRGQAF+TFPSVE+AHRALNLVNG+VFKGKPMIIQFGR P AAKP+
Sbjct: 389 RLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRTPGAAKPN 441
>UNIPROTKB|G3X691 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:DAAA02071483
EMBL:DAAA02071484 EMBL:DAAA02071485 Ensembl:ENSBTAT00000001264
Uniprot:G3X691
Length = 413
Score = 224 (83.9 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 48/105 (45%), Positives = 62/105 (59%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>UNIPROTKB|F1RXK8 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 CTD:55285 OMA:REMEIEN EMBL:FP236674
EMBL:FP015867 RefSeq:XP_003135343.2 Ensembl:ENSSSCT00000013728
GeneID:100516772 KEGG:ssc:100516772 Uniprot:F1RXK8
Length = 412
Score = 222 (83.2 bits), Expect = 7.3e-18, P = 7.3e-18
Identities = 48/105 (45%), Positives = 62/105 (59%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTEKDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILVIEFGKN 387
>UNIPROTKB|Q96IZ5 [details] [associations]
symbol:RBM41 "RNA-binding protein 41" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL390039 EMBL:AK001878
EMBL:AK023732 EMBL:BC006986 IPI:IPI00306343 IPI:IPI00643333
IPI:IPI00844169 RefSeq:NP_001164551.1 RefSeq:NP_060771.3
UniGene:Hs.139053 PDB:2CPX PDBsum:2CPX ProteinModelPortal:Q96IZ5
SMR:Q96IZ5 IntAct:Q96IZ5 MINT:MINT-1449430 PhosphoSite:Q96IZ5
DMDM:117949772 PaxDb:Q96IZ5 PRIDE:Q96IZ5 DNASU:55285
Ensembl:ENST00000203616 Ensembl:ENST00000372479
Ensembl:ENST00000372487 Ensembl:ENST00000495517 GeneID:55285
KEGG:hsa:55285 UCSC:uc004emy.2 CTD:55285 GeneCards:GC0XM106307
H-InvDB:HIX0020243 HGNC:HGNC:25617 HPA:HPA042881 neXtProt:NX_Q96IZ5
PharmGKB:PA145148155 eggNOG:NOG147711 HOGENOM:HOG000231401
HOVERGEN:HBG057264 InParanoid:Q96IZ5 OMA:REMEIEN OrthoDB:EOG4JT05J
PhylomeDB:Q96IZ5 EvolutionaryTrace:Q96IZ5 GenomeRNAi:55285
NextBio:59448 ArrayExpress:Q96IZ5 Bgee:Q96IZ5 CleanEx:HS_RBM41
Genevestigator:Q96IZ5 GermOnline:ENSG00000089682 Uniprot:Q96IZ5
Length = 413
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 48/105 (45%), Positives = 62/105 (59%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>UNIPROTKB|F1NFC5 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:AADN02013197
EMBL:AADN02013196 IPI:IPI00597936 Ensembl:ENSGALT00000007718
Uniprot:F1NFC5
Length = 412
Score = 208 (78.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 46/110 (41%), Positives = 65/110 (59%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EE+ S+P F +Y G P VLY+KNL SLF + + +
Sbjct: 290 RLSEEELRSIPRFSSYHPGEPNKVLYVKNLGPRVTMKDMV----SLFARFQQDSTPIQFR 345
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN--PAA 110
L+ GRMRGQAF+TFP ++ A A+ LVNGY +GKPM+I+FG++ P+A
Sbjct: 346 LLS-GRMRGQAFITFPDIQSAQDAMLLVNGYRLQGKPMVIEFGKSKGPSA 394
Score = 31 (16.0 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 1 MGKLPPEEI 9
+GK PP E+
Sbjct: 211 LGKQPPGEV 219
>UNIPROTKB|F1PU87 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:AAEX03026749
Ensembl:ENSCAFT00000037287 Uniprot:F1PU87
Length = 413
Score = 219 (82.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/105 (44%), Positives = 63/105 (60%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRMRGQAF+TFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 343 RIMTGRMRGQAFITFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>UNIPROTKB|D4A6K1 [details] [associations]
symbol:Rbm41 "Protein Rbm41" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951350
ProteinModelPortal:D4A6K1 Ensembl:ENSRNOT00000065141 RGD:1590579
ArrayExpress:D4A6K1 Uniprot:D4A6K1
Length = 425
Score = 205 (77.2 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 44/105 (41%), Positives = 62/105 (59%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ SLF K LI
Sbjct: 299 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPLIQF 354
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 355 QMMTGRMRGQAFITFPNKDIAWQALHQINGYKLYGKILVIEFAKS 399
>ZFIN|ZDB-GENE-060312-35 [details] [associations]
symbol:rnpc3 "RNA-binding region (RNP1, RRM)
containing 3" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060312-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
EMBL:BC114288 IPI:IPI00500928 RefSeq:NP_001035019.1
UniGene:Dr.79649 ProteinModelPortal:Q29RB3 GeneID:565672
KEGG:dre:565672 InParanoid:Q29RB3 NextBio:20885998
ArrayExpress:Q29RB3 Uniprot:Q29RB3
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 46/113 (40%), Positives = 63/113 (55%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G+L +EI L +FK Y G P LY+KN+AK G S + ++
Sbjct: 382 GRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFD 441
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+ LM+EGRM+GQAF+ PS A +AL NGYV K KP+++QF R+ AKP
Sbjct: 442 IVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARS---AKP 491
>UNIPROTKB|H0YEY9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 HGNC:HGNC:18666 ChiTaRS:RNPC3
Ensembl:ENST00000531127 Uniprot:H0YEY9
Length = 128
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 8 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 67
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 68 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 114
>MGI|MGI:2444923 [details] [associations]
symbol:Rbm41 "RNA binding motif protein 41" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2444923 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q96IZ5 GeneTree:ENSGT00530000063786 CTD:55285 eggNOG:NOG147711
HOGENOM:HOG000231401 HOVERGEN:HBG057264 EMBL:AK040213 EMBL:AK084514
EMBL:AK084629 EMBL:AK164496 EMBL:AK166005 EMBL:AL672270
EMBL:BC037024 IPI:IPI00170384 IPI:IPI00460072 IPI:IPI00652894
IPI:IPI00798583 RefSeq:NP_001165618.1 RefSeq:NP_001165619.1
RefSeq:NP_705814.1 UniGene:Mm.256670 ProteinModelPortal:Q8JZV4
SMR:Q8JZV4 PhosphoSite:Q8JZV4 PRIDE:Q8JZV4
Ensembl:ENSMUST00000033810 Ensembl:ENSMUST00000087400
Ensembl:ENSMUST00000113007 GeneID:237073 KEGG:mmu:237073
UCSC:uc009ukp.2 UCSC:uc009ukq.2 UCSC:uc012hpl.1 NextBio:383213
Bgee:Q8JZV4 CleanEx:MM_RBM41 Genevestigator:Q8JZV4
GermOnline:ENSMUSG00000031433 Uniprot:Q8JZV4
Length = 413
Score = 196 (74.1 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 43/105 (40%), Positives = 61/105 (58%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ SLF K I
Sbjct: 287 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 343 RMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>UNIPROTKB|F1MJQ8 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
IPI:IPI00706852 UniGene:Bt.6645 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:DAAA02007691
Ensembl:ENSBTAT00000025416 Uniprot:F1MJQ8
Length = 516
Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>UNIPROTKB|Q3MHP0 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC105165 IPI:IPI00706852
RefSeq:NP_001070585.1 UniGene:Bt.6645 HSSP:Q96IZ5
ProteinModelPortal:Q3MHP0 PRIDE:Q3MHP0 GeneID:768060
KEGG:bta:768060 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 InParanoid:Q3MHP0 KO:K13157 OrthoDB:EOG46DM34
NextBio:20918415 Uniprot:Q3MHP0
Length = 516
Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>UNIPROTKB|A8K1C9 [details] [associations]
symbol:RNPC3 "cDNA FLJ77710" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000007217
HOVERGEN:HBG057088 EMBL:BX322653 EMBL:AC095032 EMBL:AC105272
UniGene:Hs.632423 HGNC:HGNC:18666 ChiTaRS:RNPC3 EMBL:AK289844
IPI:IPI00923554 SMR:A8K1C9 STRING:A8K1C9 Ensembl:ENST00000524631
UCSC:uc010oum.1 Uniprot:A8K1C9
Length = 516
Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>UNIPROTKB|Q96LT9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IC] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097
GO:GO:0005689 CTD:55599 eggNOG:NOG128363 HOVERGEN:HBG057088
KO:K13157 OrthoDB:EOG46DM34 EMBL:AY099329 EMBL:BK005195
EMBL:AB058742 EMBL:AK000015 EMBL:AK057799 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 EMBL:BC010697 EMBL:AL137730
IPI:IPI00514393 PIR:T46396 RefSeq:NP_060089.1 UniGene:Hs.632423
PDB:3EGN PDBsum:3EGN ProteinModelPortal:Q96LT9 SMR:Q96LT9
IntAct:Q96LT9 MINT:MINT-1180654 STRING:Q96LT9 PhosphoSite:Q96LT9
DMDM:74760946 PaxDb:Q96LT9 PeptideAtlas:Q96LT9 PRIDE:Q96LT9
DNASU:55599 Ensembl:ENST00000423855 Ensembl:ENST00000531883
Ensembl:ENST00000533099 GeneID:55599 KEGG:hsa:55599 UCSC:uc010oul.1
GeneCards:GC01P104068 HGNC:HGNC:18666 neXtProt:NX_Q96LT9
PharmGKB:PA134865246 InParanoid:Q96LT9 OMA:KESEYES ChiTaRS:RNPC3
EvolutionaryTrace:Q96LT9 GenomeRNAi:55599 NextBio:60134
ArrayExpress:Q96LT9 Bgee:Q96LT9 CleanEx:HS_RNPC3
Genevestigator:Q96LT9 Uniprot:Q96LT9
Length = 517
Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>UNIPROTKB|F1S572 [details] [associations]
symbol:LOC100522864 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:CU469487 EMBL:CU571185
Ensembl:ENSSSCT00000026127 Ensembl:ENSSSCT00000031693
Uniprot:F1S572
Length = 517
Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>UNIPROTKB|F1PE39 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
CTD:55599 KO:K13157 OMA:KESEYES GeneTree:ENSGT00530000063786
EMBL:AAEX03004757 EMBL:AAEX03004758 RefSeq:XP_547257.3
Ensembl:ENSCAFT00000031786 GeneID:490136 KEGG:cfa:490136
Uniprot:F1PE39
Length = 518
Score = 196 (74.1 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK G S + +
Sbjct: 398 GRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 457
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 458 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 504
>MGI|MGI:1914475 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1914475 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005689 HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
OMA:KESEYES EMBL:AK013288 EMBL:AK134241 EMBL:AK161063 EMBL:BC016603
EMBL:BC043695 EMBL:AK173272 IPI:IPI00831482 IPI:IPI00831582
RefSeq:NP_001033785.1 RefSeq:NP_080319.2 UniGene:Mm.316928
ProteinModelPortal:Q3UZ01 SMR:Q3UZ01 STRING:Q3UZ01
PhosphoSite:Q3UZ01 PRIDE:Q3UZ01 Ensembl:ENSMUST00000092154
Ensembl:ENSMUST00000106535 Ensembl:ENSMUST00000106536 GeneID:67225
KEGG:mmu:67225 UCSC:uc008rbd.1 UCSC:uc008rbf.1
GeneTree:ENSGT00530000063786 InParanoid:Q3UZ01 NextBio:323936
Bgee:Q3UZ01 CleanEx:MM_RNPC3 Genevestigator:Q3UZ01 Uniprot:Q3UZ01
Length = 514
Score = 195 (73.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ G S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 455 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 501
>RGD|1582776 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1582776
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005689
HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:AABR03021470 EMBL:AABR03019434
EMBL:AABR03018538 EMBL:AABR03019699 EMBL:BC098742 IPI:IPI00214747
RefSeq:NP_001094280.1 UniGene:Rn.17587 ProteinModelPortal:Q4G055
STRING:Q4G055 PRIDE:Q4G055 Ensembl:ENSRNOT00000023366 GeneID:691538
KEGG:rno:691538 UCSC:RGD:1582776 InParanoid:Q4G055 NextBio:743263
ArrayExpress:Q4G055 Genevestigator:Q4G055 Uniprot:Q4G055
Length = 515
Score = 195 (73.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ G S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>UNIPROTKB|F1NVY1 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
OMA:KESEYES GeneTree:ENSGT00530000063786 EMBL:AADN02012921
IPI:IPI00590374 Ensembl:ENSGALT00000008292 Uniprot:F1NVY1
Length = 490
Score = 188 (71.2 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSL--FGSIDAAKSGLI 60
+L EE+ +FKNY G P +Y+KNLAK G F S+ ++
Sbjct: 371 RLSREEMEKFSVFKNYEPGEPNCRIYVKNLAKQVQEKDLKFIFGRYVDFQSV-LERNMFD 429
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R+
Sbjct: 430 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFARS 476
>ZFIN|ZDB-GENE-041114-107 [details] [associations]
symbol:rbm41 "RNA binding motif protein 41"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-041114-107 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:55285 eggNOG:NOG147711 HOGENOM:HOG000231401
HOVERGEN:HBG057264 OrthoDB:EOG4JT05J EMBL:BC085431 IPI:IPI00832601
RefSeq:NP_001007406.1 UniGene:Dr.119922 ProteinModelPortal:Q5U3Q9
SMR:Q5U3Q9 GeneID:492764 KEGG:dre:492764 InParanoid:Q5U3Q9
NextBio:20865261 Uniprot:Q5U3Q9
Length = 439
Score = 179 (68.1 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 38/100 (38%), Positives = 57/100 (57%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQE 66
E I ++P FKNY G P+ VL +KN++ SLF +S I+ +
Sbjct: 316 EAIRNIPRFKNYQRGKPSKVLCVKNISPRASLAQLV----SLFSRFQKDESQPILYRLLT 371
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GR++GQAF+T ++A AL+L+NGY KP++I+FGR
Sbjct: 372 GRLKGQAFITLADAKIAQAALDLLNGYKLLEKPLVIEFGR 411
>DICTYBASE|DDB_G0270734 [details] [associations]
symbol:DDB_G0270734 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270734 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13157 RefSeq:XP_646560.1
ProteinModelPortal:Q55CC1 EnsemblProtists:DDB0201959 GeneID:8617528
KEGG:ddi:DDB_G0270734 eggNOG:KOG4206 InParanoid:Q55CC1 OMA:NISKHAS
Uniprot:Q55CC1
Length = 578
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 16 KNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K G P + +YIKN++K F S+ K LI+ +EG++R QAF+
Sbjct: 486 KKIEIGEPTNKIYIKNISKHASYQDFQSLFRRHFNSVTEMKKQLIIDYHKEGKLRNQAFI 545
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
TFP+++LA ALN G+ KP++I F +N
Sbjct: 546 TFPTIQLATLALNQTQGFKLHQKPILILFSKN 577
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 135 (52.6 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P K + P+ LYI+N+ + LFGS + V+ + RMRGQ
Sbjct: 14 PSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKV---IDVQARKTLRMRGQ 70
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
AFV F ++E A RAL + GY GKPM+IQ+ ++
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 111 (44.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 22 NPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPS 79
NP +Y+ NL + +F + G I++LM ++ +MRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVF-----TQFGEIIQLMSFRKEKMRGQAHIVFKE 59
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 111 (44.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 22 NPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPS 79
NP +Y+ NL + +F + G I++LM ++ +MRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVF-----TQFGEIIQLMSFRKEKMRGQAHIVFKE 59
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>GENEDB_PFALCIPARUM|MAL13P1.35 [details] [associations]
symbol:MAL13P1.35 "u1 small nuclear
ribonucleoprotein a, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 107 (42.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 32/85 (37%), Positives = 39/85 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LYIKNL LF + K LIV M+ +GQA+V + E
Sbjct: 173 PNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKD-LIV--MKSFWRKGQAWVVYDDKEC 229
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A +ALN + GYV GK M I F N
Sbjct: 230 ATKALNALQGYVLFGKIMQINFSHN 254
>UNIPROTKB|C0H5A4 [details] [associations]
symbol:MAL13P1.35 "U1 small nuclear ribonucleoprotein a,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 107 (42.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 32/85 (37%), Positives = 39/85 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LYIKNL LF + K LIV M+ +GQA+V + E
Sbjct: 173 PNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKD-LIV--MKSFWRKGQAWVVYDDKEC 229
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A +ALN + GYV GK M I F N
Sbjct: 230 ATKALNALQGYVLFGKIMQINFSHN 254
>ASPGD|ASPL0000027676 [details] [associations]
symbol:AN5779 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001305 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
PANTHER:PTHR10501 ProteinModelPortal:C8VFF2
EnsemblFungi:CADANIAT00003274 HOGENOM:HOG000181731 OMA:DIQTATQ
Uniprot:C8VFF2
Length = 188
Score = 99 (39.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 20 AGNPASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
AG P LY NL +LF + L + M+ +MRGQA V F
Sbjct: 16 AGLPNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTV---LDIVAMKTEKMRGQAHVVFKD 72
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
++ + +A+ + G+ F GKPM I + +
Sbjct: 73 IQASTQAMRALQGFEFFGKPMKIVYAK 99
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 100 (40.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 27/84 (32%), Positives = 37/84 (44%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M RMRGQAFV F +
Sbjct: 14 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTM---RMRGQAFVIFKELSA 70
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 71 ATNALRQLQGFPFYNKPMRIQYAK 94
>WB|WBGene00004385 [details] [associations]
symbol:rnp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042127
GO:GO:0007281 GO:GO:0000398 GO:GO:0040020 GO:GO:0017069
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 OMA:ATNAMRT EMBL:FO081596
PIR:T29387 RefSeq:NP_500504.1 ProteinModelPortal:Q21322 SMR:Q21322
STRING:Q21322 PaxDb:Q21322 EnsemblMetazoa:K08D10.4 GeneID:177181
KEGG:cel:CELE_K08D10.4 UCSC:K08D10.4 CTD:177181 WormBase:K08D10.4
InParanoid:Q21322 NextBio:895684 Uniprot:Q21322
Length = 206
Score = 98 (39.6 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P S LYI NL + ++F S + + + +MRGQA V F +
Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTL---KMRGQAHVIFKELPA 62
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A A +NG+ F KPM IQF R
Sbjct: 63 ASAAREALNGFPFYEKPMRIQFAR 86
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 97 (39.2 bits), Expect = 0.00010, P = 0.00010
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>ASPGD|ASPL0000053720 [details] [associations]
symbol:AN0109 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0000398 EMBL:AACD01000004 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519 OMA:ATNAMRT
OrthoDB:EOG4TB7MX RefSeq:XP_657713.1 ProteinModelPortal:Q5BH71
STRING:Q5BH71 EnsemblFungi:CADANIAT00002640 GeneID:2875883
KEGG:ani:AN0109.2 Uniprot:Q5BH71
Length = 252
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P +Y++NL + +F ++ G I++++ + ++ GQAF+ F +V
Sbjct: 12 PNPTVYVRNLEERIKLDQLKEALSEIF-----SEYGTILEIVAKRNLKAKGQAFIVFDNV 66
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA++ VNG+ KPM++ + + + A
Sbjct: 67 DSATRAIDEVNGFDLFDKPMVLDYAKTRSDA 97
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 27 LYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YI NL + ++F L+ ++M +MRGQAFV F V A A
Sbjct: 18 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIM---KMRGQAFVIFKEVTSATNA 74
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L + G+ F KPM IQ+ +
Sbjct: 75 LRSMQGFPFYDKPMRIQYAK 94
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 95 (38.5 bits), Expect = 0.00011, P = 0.00011
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
FG ID +++K GR +G F+TF E A RAL +NG+ G+PM
Sbjct: 36 FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 84
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ +LF + +K M +MRGQAFV F +
Sbjct: 15 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 71
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 72 STNALRQLQGFPFYGKPMRIQYAK 95
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P LY+ NL + LF +K G I++++ + +MRGQAF+ F +
Sbjct: 10 PNQTLYVNNLYEKISKKKLIEQLLLLF-----SKYGPILEIVGSKSLKMRGQAFIVFKDI 64
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL +NG+ F +PM IQ+ ++ + A
Sbjct: 65 TSASNALREMNGFNFLDRPMKIQYCKSKSDA 95
>UNIPROTKB|J9NXJ9 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03005528 Ensembl:ENSCAFT00000048760 Uniprot:J9NXJ9
Length = 165
Score = 92 (37.4 bits), Expect = 0.00016, P = 0.00016
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI +L + ++F L+ + + +MRGQAFV F V
Sbjct: 27 PNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSL---KMRGQAFVIFKEVSR 83
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 84 ATNALRSMQGFPFYDKPMSIQYAK 107
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
FG ID +++K GR +G F+TF E A RAL +NG+ G+PM
Sbjct: 61 FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 109
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++F L+ + + +MRGQAFV F V
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL---KMRGQAFVIFKEVSS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++F L+ + + +MRGQAFV F V
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL---KMRGQAFVIFKEVSS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++F L+ + + +MRGQAFV F V
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL---KMRGQAFVIFKEVSS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++F L+ + + +MRGQAFV F V
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL---KMRGQAFVIFKEVSS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++F L+ + + +MRGQAFV F V
Sbjct: 12 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL---KMRGQAFVIFKEVSS 68
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 69 ATNALRSMQGFPFYDKPMRIQYAK 92
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 100 (40.3 bits), Expect = 0.00022, P = 0.00022
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 25 SVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S LY+KNL++ G +G I +AK V + GR +G FV F + E +
Sbjct: 304 SNLYVKNLSESMNETRLREIFGC-YGQIVSAK----VMCHENGRSKGFGFVCFSNCEESK 358
Query: 85 RALNLVNGYVFKGKPMIIQ 103
+A +NG++ GKP++++
Sbjct: 359 QAKRYLNGFLVDGKPIVVR 377
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 95 (38.5 bits), Expect = 0.00027, P = 0.00027
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
FG ID +++K GR +G F+TF E A RAL +NG+ G+PM
Sbjct: 116 FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 164
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 94 (38.1 bits), Expect = 0.00029, P = 0.00029
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 27 LYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 23 LYIKNLDDTIDDEKLRKEF-SPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 76
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 77 VTEMNGRIVGSKPLYVALAQRKEERK 102
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FG ID +++K + GR +G F+TF E A RAL +NG+ G+PM I
Sbjct: 301 FGKIDNI---VLMKDSETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 351
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 92 (37.4 bits), Expect = 0.00036, P = 0.00036
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++F + +K + +MRGQAFV F +
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTL---KMRGQAFVIFKEIGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM I + ++
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKS 86
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 96 (38.9 bits), Expect = 0.00043, P = 0.00043
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FG ID +++K GR +G F+TF E A RAL +NG+ G+PM I
Sbjct: 277 FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 327
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 25 SVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S+L+IKNL+ LFG + ++L + RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMY----DLFGRYGPVRQ---IRLGNTVQTRGTAFVVYENVQDAR 64
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAK 112
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 46 GSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
G+ F SI + IV + GR RG AF+ F A RA+ +NG F G+P+
Sbjct: 22 GNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPL 76
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 27 LYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 297 LYIKNLDDTIDDEKLRKEF-SPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 350
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 351 VTEMNGRIVGSKPLYVALAQRKEERK 376
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 95 (38.5 bits), Expect = 0.00059, P = 0.00059
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
FG ID +++K GR +G F+TF E A RAL +NG+ G+PM
Sbjct: 286 FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 334
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 95 (38.5 bits), Expect = 0.00059, P = 0.00059
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
FG ID +++K GR +G F+TF E A RAL +NG+ G+PM
Sbjct: 287 FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 335
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 90 (36.7 bits), Expect = 0.00062, P = 0.00062
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + S FGSI AK +M+ G+ +G V F S E
Sbjct: 136 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 189
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG + KP+ + G+
Sbjct: 190 ATKAVDEMNGRIVGSKPLHVTLGQ 213
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 94 (38.1 bits), Expect = 0.00069, P = 0.00069
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 27 LYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 51 LYIKNLDDTIDDEKLRKEF-SPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 104
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 105 VTEMNGRIVGSKPLYVALAQRKEERK 130
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 23 PASVLYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + SLFGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEF-SLFGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A+N +NG V K + + G+
Sbjct: 354 ASKAVNEMNGRVVGSKTLHVTLGQ 377
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 91 (37.1 bits), Expect = 0.00079, P = 0.00079
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 27 LYIKNLAKXXXXXXXXXXXGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YI NL + ++F L+ + + +M+GQAFV F + A A
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTL---KMKGQAFVIFKEINSASNA 68
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L + G+ F KPM IQ+ +
Sbjct: 69 LRSMQGFPFYDKPMRIQYSK 88
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 96 (38.9 bits), Expect = 0.0010, P = 0.0010
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 47 SLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF-G 105
S FG I AK ++K G +G FV + V++A+ A+ +NGY F+G+ + ++ G
Sbjct: 501 SSFGEIVMAK---VIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 106 RNPAAAKP 113
++P P
Sbjct: 558 KSPPPIAP 565
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 114 103 0.00091 102 3 11 22 0.40 30
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 452 (48 KB)
Total size of DFA: 85 KB (2066 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.77u 0.22s 8.99t Elapsed: 00:00:00
Total cpu time: 8.78u 0.22s 9.00t Elapsed: 00:00:00
Start: Thu May 9 22:18:06 2013 End: Thu May 9 22:18:06 2013