BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033648
(114 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359477912|ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera]
gi|298205172|emb|CBI17231.3| unnamed protein product [Vitis vinifera]
Length = 463
Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 107/111 (96%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNYTAGNPA VLYIKNLAKDVV DDF+F+FGSLFGS+DAAKSGL V
Sbjct: 351 GKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSV 410
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
KLMQEGRMRGQAFVTFPSVELAH ALNLVNGYVFKGKPMIIQFGRNPAAAK
Sbjct: 411 KLMQEGRMRGQAFVTFPSVELAHHALNLVNGYVFKGKPMIIQFGRNPAAAK 461
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P +++ A A+ L I++L + +P D LF S A+ V+ GR+R
Sbjct: 9 PRTQSFEAEKSAATLLIRHLP-EAIPQD---TLSRLFSSYGASS----VRPCTSGRLRNC 60
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
AFV F S LA +AL +NG F GK ++++ P
Sbjct: 61 AFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPT 97
>gi|359478163|ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
vinifera]
Length = 463
Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/111 (91%), Positives = 106/111 (95%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNY AGNPA VLYIKNLAKDVV DDF+F+FGSLFGS+DAAKSGL V
Sbjct: 351 GKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSV 410
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
KLMQEGRMRGQAFVTFPSVELAH ALN+VNGYVFKGKPMIIQFGRNPAAAK
Sbjct: 411 KLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAK 461
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P +++ A A+ L I++L + +P D LF S A+ V+ GR+R
Sbjct: 9 PRTQSFEAEKSAATLLIRHLP-EAIPQD---TLSRLFSSYGASS----VRPSTSGRLRNC 60
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
AFV F S LA +AL +NG F GK ++++ P
Sbjct: 61 AFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPT 97
>gi|297743789|emb|CBI36672.3| unnamed protein product [Vitis vinifera]
Length = 263
Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 102/111 (91%), Positives = 106/111 (95%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNY AGNPA VLYIKNLAKDVV DDF+F+FGSLFGS+DAAKSGL V
Sbjct: 151 GKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSV 210
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
KLMQEGRMRGQAFVTFPSVELAH ALN+VNGYVFKGKPMIIQFGRNPAAAK
Sbjct: 211 KLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAK 261
>gi|356560981|ref|XP_003548764.1| PREDICTED: uncharacterized protein LOC100818499 [Glycine max]
Length = 456
Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/111 (90%), Positives = 106/111 (95%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNYTAGNPA VLYIKNLAKDV+ DDF+F+FGSLFGSI+AAKSGL V
Sbjct: 344 GKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIEAAKSGLQV 403
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
KLMQEGRMRGQAF+TFPS+ELAH ALNLVNGYV KGKPMIIQFGRNPAAAK
Sbjct: 404 KLMQEGRMRGQAFITFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPAAAK 454
>gi|255568988|ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis]
gi|223535277|gb|EEF36954.1| RNA binding protein, putative [Ricinus communis]
Length = 450
Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/111 (86%), Positives = 104/111 (93%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
KL PEEILSLP FKNYT GNPASVLYIKNL+KD+V DDFF++FGSLFGS+DAAK GL V
Sbjct: 338 NKLAPEEILSLPQFKNYTVGNPASVLYIKNLSKDMVADDFFYIFGSLFGSLDAAKVGLSV 397
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
KLMQEGRMRGQAFVTFPSVELAH+ALNLVNGYVFKGKPMIIQFGRNP+A+K
Sbjct: 398 KLMQEGRMRGQAFVTFPSVELAHQALNLVNGYVFKGKPMIIQFGRNPSASK 448
>gi|224123704|ref|XP_002319145.1| predicted protein [Populus trichocarpa]
gi|222857521|gb|EEE95068.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 104/112 (92%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L PEEILSLP FKNYT GNPASVLYIKNL K+VV DDFF++FGSLFGSIDAAKSGL VK
Sbjct: 235 RLVPEEILSLPKFKNYTVGNPASVLYIKNLDKEVVADDFFYIFGSLFGSIDAAKSGLSVK 294
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
LMQEGRMRGQAFVTF SVELAH+ALNLVNGYVFK KPMIIQFGRNP+AAKP+
Sbjct: 295 LMQEGRMRGQAFVTFSSVELAHQALNLVNGYVFKDKPMIIQFGRNPSAAKPN 346
>gi|357128643|ref|XP_003565980.1| PREDICTED: RNA-binding protein 40-like [Brachypodium distachyon]
Length = 455
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/112 (85%), Positives = 104/112 (92%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
KLP EEILSLPMFKNYT GNPASVLYIKNLAKDVV DDF++VFGS+F S+DAAKSGL +K
Sbjct: 344 KLPTEEILSLPMFKNYTPGNPASVLYIKNLAKDVVHDDFYYVFGSVFESMDAAKSGLSIK 403
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
LMQEGRMRGQAFVTFPSVELA RALNL +GYVFKGKPMIIQFGR+PAA+K S
Sbjct: 404 LMQEGRMRGQAFVTFPSVELAQRALNLTHGYVFKGKPMIIQFGRSPAASKAS 455
>gi|297849226|ref|XP_002892494.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297338336|gb|EFH68753.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/113 (82%), Positives = 106/113 (93%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
G+LPP+EILSLPMFKNYTAGNP+ VLYIKNLAKDVV DDF+++FGS F SI+AAK+ L V
Sbjct: 325 GRLPPQEILSLPMFKNYTAGNPSLVLYIKNLAKDVVIDDFYYIFGSQFESIEAAKTSLGV 384
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+LMQEGRMRGQAF+TFPSVE+AHRALNLVNG+VFKGKPMIIQFGRNP AAKP+
Sbjct: 385 RLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRNPGAAKPN 437
>gi|212721632|ref|NP_001132325.1| uncharacterized protein LOC100193767 [Zea mays]
gi|194694084|gb|ACF81126.1| unknown [Zea mays]
gi|414866589|tpg|DAA45146.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
gi|414866590|tpg|DAA45147.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 450
Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 102/112 (91%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
KLPPEEILSLPMFKNYT GNPASVLYIKNLAKDV DDF++VFGS+F S+D+A+ GL VK
Sbjct: 339 KLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVTHDDFYYVFGSVFESMDSARLGLSVK 398
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
LMQEGRMRGQAFVTFP+VELA RALNL +GYVFKGKPMIIQFGRNPAA K S
Sbjct: 399 LMQEGRMRGQAFVTFPTVELAQRALNLAHGYVFKGKPMIIQFGRNPAANKAS 450
>gi|115452785|ref|NP_001049993.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|108707928|gb|ABF95723.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548464|dbj|BAF11907.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|218192743|gb|EEC75170.1| hypothetical protein OsI_11395 [Oryza sativa Indica Group]
Length = 467
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/112 (83%), Positives = 103/112 (91%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
KLPPEEILSLPMFKNYT GNPASVLYIKNLAKDV+ DDF++VFGS+F ++D A+S L +K
Sbjct: 356 KLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVIQDDFYYVFGSVFENMDIARSSLSIK 415
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
LMQEGRMRGQAFVTFPSVELA RALNLV+G+VFKGKPMIIQFGRNPAA K S
Sbjct: 416 LMQEGRMRGQAFVTFPSVELAQRALNLVHGFVFKGKPMIIQFGRNPAANKSS 467
>gi|222624851|gb|EEE58983.1| hypothetical protein OsJ_10687 [Oryza sativa Japonica Group]
Length = 560
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/112 (83%), Positives = 103/112 (91%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
KLPPEEILSLPMFKNYT GNPASVLYIKNLAKDV+ DDF++VFGS+F ++D A+S L +K
Sbjct: 449 KLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVIQDDFYYVFGSVFENMDIARSSLSIK 508
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
LMQEGRMRGQAFVTFPSVELA RALNLV+G+VFKGKPMIIQFGRNPAA K S
Sbjct: 509 LMQEGRMRGQAFVTFPSVELAQRALNLVHGFVFKGKPMIIQFGRNPAANKSS 560
>gi|449444421|ref|XP_004139973.1| PREDICTED: RNA-binding protein 40-like [Cucumis sativus]
Length = 359
Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 99/113 (87%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNYTAG P SVLYIKNLAKDV+ DD +++FGSLF ID AKS L V
Sbjct: 247 GKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEGIDEAKSALTV 306
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
KLMQEGRMRGQAFVTFPS+ELA RALNLVNGYVFKGKPMIIQFGRNP K S
Sbjct: 307 KLMQEGRMRGQAFVTFPSIELAQRALNLVNGYVFKGKPMIIQFGRNPGGVKGS 359
>gi|242035873|ref|XP_002465331.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
gi|241919185|gb|EER92329.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
Length = 467
Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/112 (82%), Positives = 101/112 (90%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
KLPPEEILSLPMFKNYT GNPASVLYIKNLAKDV DDF++VFGS+F S+D+A+ GL +K
Sbjct: 356 KLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVTHDDFYYVFGSVFESMDSARLGLSIK 415
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
LMQEGRMRGQAFVTFP+VELA RALNL +GYVFKGKPMII FGRNPAA K S
Sbjct: 416 LMQEGRMRGQAFVTFPTVELAQRALNLAHGYVFKGKPMIIHFGRNPAANKAS 467
>gi|15217461|ref|NP_172394.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
gi|20258828|gb|AAM13896.1| unknown protein [Arabidopsis thaliana]
gi|21689717|gb|AAM67480.1| unknown protein [Arabidopsis thaliana]
gi|332190295|gb|AEE28416.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
Length = 442
Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/113 (79%), Positives = 103/113 (91%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
G+LPP++ILSLPMFKNYTAGNP+ VLYIKNLAKDVV DDF+++FGS F S + AKS L V
Sbjct: 329 GRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGV 388
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+LMQEGRMRGQAF+TFPSVE+AHRALNLVNG+VFKGKPMIIQFGR P AAKP+
Sbjct: 389 RLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRTPGAAKPN 441
>gi|357508623|ref|XP_003624600.1| RNA-binding protein [Medicago truncatula]
gi|355499615|gb|AES80818.1| RNA-binding protein [Medicago truncatula]
Length = 492
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 102/144 (70%), Gaps = 33/144 (22%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLP FKNYT GNPASVLYIKNLAKDVV DDF+ +FGS FGS DAAKSGL V
Sbjct: 347 GKLPPEEILSLPKFKNYTPGNPASVLYIKNLAKDVVADDFYLLFGSFFGSTDAAKSGLQV 406
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRAL---------------------------------N 88
KLMQEGRM+GQAF+TFPS ELAH+AL N
Sbjct: 407 KLMQEGRMKGQAFLTFPSTELAHQALAFMFEGFFRHCMLNKKISSHGTSYFGDRNKHHHN 466
Query: 89 LVNGYVFKGKPMIIQFGRNPAAAK 112
LVNGY FKGKPMIIQFGRNPAAAK
Sbjct: 467 LVNGYKFKGKPMIIQFGRNPAAAK 490
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 15 FKNYTAGNPASV-----LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRM 69
F+ T NP +V L IK+L D +P D S +G+ V+ GR+
Sbjct: 11 FQGTTEPNPCTVESPATLLIKHLP-DAIPHDTLSRLLSHYGASS-------VRPCSAGRL 62
Query: 70 RGQAFVTFPSVELAHRALNLVNGYVFKGK 98
R AFV F + LA +A +NG F GK
Sbjct: 63 RNCAFVDFKNDMLASQAQRQLNGLKFLGK 91
>gi|356570297|ref|XP_003553326.1| PREDICTED: RNA-binding protein 40-like [Glycine max]
Length = 452
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/97 (88%), Positives = 92/97 (94%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNYTAGNPA VLYIKNLAKDV+ DDF+F+FGSLFGSIDAAKSGL V
Sbjct: 353 GKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIDAAKSGLQV 412
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98
KLMQEGRMRGQAF+TFPS+ELAH ALNLVNGYV KG+
Sbjct: 413 KLMQEGRMRGQAFITFPSIELAHHALNLVNGYVLKGR 449
>gi|147802491|emb|CAN75157.1| hypothetical protein VITISV_042644 [Vitis vinifera]
Length = 408
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 81/87 (93%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNY AGNPA VLYIKNLAKDVV DDF+F+FGSLFGS+DAAKSGL V
Sbjct: 159 GKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSV 218
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALN 88
KLMQEGRMRGQAFVTFPSVELAH AL
Sbjct: 219 KLMQEGRMRGQAFVTFPSVELAHHALQ 245
>gi|168034238|ref|XP_001769620.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679162|gb|EDQ65613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 457
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
G++ E+L+LP+ KNY AG P+ VLYIKNLAK+V +D F+VFG+ F ++D K+ L V
Sbjct: 346 GQMSEAEMLALPILKNYAAGAPSQVLYIKNLAKEVTSEDLFYVFGAFFPTLDETKAALNV 405
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
LMQEGRMRGQAFVTFPS E A AL L +G+V KGKPMI+QFGRN +AAK
Sbjct: 406 NLMQEGRMRGQAFVTFPSTEAAQDALGLTHGFVLKGKPMIVQFGRNRSAAK 456
>gi|224144758|ref|XP_002325403.1| predicted protein [Populus trichocarpa]
gi|222862278|gb|EEE99784.1| predicted protein [Populus trichocarpa]
Length = 420
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 77/85 (90%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L PEEILSLP FKNYT G PA VLYIKNL K+VV DDFF++FGSLFGSIDAAKSGL VK
Sbjct: 334 RLAPEEILSLPKFKNYTVGKPAPVLYIKNLDKEVVFDDFFYIFGSLFGSIDAAKSGLSVK 393
Query: 63 LMQEGRMRGQAFVTFPSVELAHRAL 87
LMQEGRMRGQAFVTFPSVELAH+AL
Sbjct: 394 LMQEGRMRGQAFVTFPSVELAHQAL 418
>gi|3249110|gb|AAC24093.1| T12M4.6 [Arabidopsis thaliana]
Length = 467
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 77/86 (89%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
G+LPP++ILSLPMFKNYTAGNP+ VLYIKNLAKDVV DDF+++FGS F S + AKS L V
Sbjct: 344 GRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGV 403
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRAL 87
+LMQEGRMRGQAF+TFPSVE+AH++
Sbjct: 404 RLMQEGRMRGQAFLTFPSVEVAHQSC 429
>gi|302811317|ref|XP_002987348.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
gi|300144983|gb|EFJ11663.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
Length = 407
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 81/106 (76%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKL E+ S P+FKNY+ G P+ VLYIKNL K+VV +D +VFG+ F S + A++GL V
Sbjct: 301 GKLSLGEVASHPVFKNYSRGTPSPVLYIKNLEKEVVLEDLHYVFGAFFPSYEEAQAGLNV 360
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
KLMQEGRM+GQAFV FPS E+A AL V+ +V KGKPM+IQ+GRN
Sbjct: 361 KLMQEGRMKGQAFVRFPSAEIAGDALAGVHSFVLKGKPMVIQYGRN 406
>gi|147828713|emb|CAN75183.1| hypothetical protein VITISV_040912 [Vitis vinifera]
Length = 562
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 58/64 (90%), Positives = 61/64 (95%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
GKLPPEEILSLPMFKNYTAGNPA VLYIKNLAKDVV DDF+F+FGSLFGS+DAAKSGL V
Sbjct: 159 GKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSV 218
Query: 62 KLMQ 65
KLMQ
Sbjct: 219 KLMQ 222
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 31/44 (70%)
Query: 65 QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 108
+EGRMRGQAFVTFPSVELAH ALN+ N V + QFG P
Sbjct: 365 EEGRMRGQAFVTFPSVELAHHALNMSNCDVLYFVVVSKQFGMEP 408
>gi|23598415|gb|AAN35177.1| nucleolin-like protein [Euprymna scolopes]
Length = 161
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 1 MGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI 60
G++ EE++ LP FKNY+AG P+S LYIKNL+K V +D + +FG + + +
Sbjct: 45 QGRISTEEMVELPAFKNYSAGEPSSRLYIKNLSKHVSEEDLWKIFGYYVDWNNKEEKNMF 104
Query: 61 -VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
++LMQEGR+RGQAF+T P+ E+A AL NG+V +PM++QF R+ + S
Sbjct: 105 YIRLMQEGRIRGQAFITLPNEEVAKVALEDTNGFVLHSRPMVVQFARSAKQKEES 159
>gi|449666884|ref|XP_002155289.2| PREDICTED: uncharacterized protein LOC100208918 [Hydra
magnipapillata]
Length = 449
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI- 60
++ EEIL++ FK YT G + LYIKNL+K V DD F+F + L+
Sbjct: 340 NRISAEEILAMTQFKKYTCGERTNRLYIKNLSKQVQTDDLLFIFNRFIRHCSEEEKALLD 399
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
++LMQEGRM+GQAFVTFP+ +A ++L +GY+ GKPM++QFG+
Sbjct: 400 IRLMQEGRMKGQAFVTFPNETIAEKSLKQTHGYILLGKPMVVQFGK 445
>gi|156390212|ref|XP_001635165.1| predicted protein [Nematostella vectensis]
gi|156222256|gb|EDO43102.1| predicted protein [Nematostella vectensis]
Length = 476
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
++ +EI ++ FKNY+ G+P S LY+KNL++ V D +VFG S+ K
Sbjct: 363 NRMSEKEIKAMSQFKNYSPGDPTSRLYVKNLSRQVEDKDLMYVFGRYVDFSVGEQKDRFD 422
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
++LM+EGRM+GQAFVT PS E A RAL V+GY+ GKP++IQF R+ A
Sbjct: 423 IRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPIVIQFARSAKA 472
>gi|193683830|ref|XP_001948838.1| PREDICTED: RNA-binding protein 40-like [Acyrthosiphon pisum]
Length = 436
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI-V 61
+L +++ ++P+FKNY G P+ LYIKNLAK V+ +D +++ S D + V
Sbjct: 327 RLSDKDMNNMPIFKNYCPGAPSCRLYIKNLAKTVLDNDLKYIYKRFLKSGDLKPGTMFDV 386
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
+LMQEGRM+GQAFVT P VE A +AL NGY+ K KPMI+QF R+ A
Sbjct: 387 RLMQEGRMKGQAFVTLPCVENAQQALKETNGYILKDKPMIVQFARSATA 435
>gi|357625057|gb|EHJ75610.1| putative RNA-binding protein 40 [Danaus plexippus]
Length = 429
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSI-DAAKSGLI 60
+L E+ LP+FKNY G P+ LYIKNLAK+V D ++ I + + G
Sbjct: 316 NRLSYREMKGLPVFKNYHPGEPSMRLYIKNLAKNVTEQDVQRIYKRYMEDIPEEERVGFD 375
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V++MQEGRM+GQAFVTFPS++LA +AL+ NG++ KPM++QF R
Sbjct: 376 VRVMQEGRMKGQAFVTFPSIKLAEQALSETNGFILNDKPMVVQFAR 421
>gi|168018462|ref|XP_001761765.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687136|gb|EDQ73521.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 9/108 (8%)
Query: 3 KLPPEEILSLP--MFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSL--FGSIDAAKSG 58
++P EI LP F NYT+G+P + +YIKNLA DV D +FG +G +
Sbjct: 293 RMPEGEIRGLPGGKFANYTSGSPTNTVYIKNLAADVTEPDLIGIFGRFETYG-----RPK 347
Query: 59 LIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
LI +LMQ GRM+GQAFVTF VE A +AL LV+GY+ K KPM+I+F R
Sbjct: 348 LIYRLMQRGRMKGQAFVTFADVETATKALKLVHGYILKAKPMVIEFAR 395
>gi|300175397|emb|CBK20708.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 11/113 (9%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKS----- 57
++ EE+ FKNY+ G+P+ LY++N+AKDV DD +FG F S + A +
Sbjct: 201 RISKEEMSHQKAFKNYSYGDPSCKLYLRNMAKDVTADDLLRLFGCFFDSDEEASAYTVEM 260
Query: 58 -----GLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105
L +++M EGRMRGQAF+TFPSVELA AL VNGY+ K KP++I G
Sbjct: 261 EMKCRKLEIRIM-EGRMRGQAFITFPSVELAREALVTVNGYLLKEKPIVIVRG 312
>gi|345487727|ref|XP_001606002.2| PREDICTED: RNA-binding protein 40-like [Nasonia vitripennis]
Length = 479
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGS-LFGSIDAAKSGLIVKLMQEGRMR 70
LP+FKNY G P+ LYIKNLAK V D F++ + +S V+LMQEGRM+
Sbjct: 380 LPVFKNYHPGKPSCRLYIKNLAKQVEESDLHFIYRRYVLPKSKNEESEYNVRLMQEGRMK 439
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
GQAFVT P++ A AL NGY+ K KPM++QF + P +
Sbjct: 440 GQAFVTLPNIAQAQLALEETNGYILKDKPMVVQFAKVPKS 479
>gi|213624585|gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|213627408|gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +FKNY G P LY+KNL+K D F+FG S + K+
Sbjct: 407 GRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFD 466
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN----PAAAK 112
++LM+EGRM+GQAF+ FP+ ++A +AL V+GYV KPM+IQF R+ P A+K
Sbjct: 467 IRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARSARPKPEASK 522
>gi|62858877|ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|115530784|emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +FKNY G P LY+KNL+K D F+FG S + K+
Sbjct: 407 GRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFD 466
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN----PAAAK 112
++LM+EGRM+GQAF+ FP+ ++A +AL V+GYV KPM+IQF R+ P A+K
Sbjct: 467 IRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARSARPKPEASK 522
>gi|166796977|gb|AAI59025.1| rnpc3 protein [Xenopus (Silurana) tropicalis]
Length = 520
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +FKNY G P LY+KNL+K D F+FG S + K+
Sbjct: 400 GRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFD 459
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN----PAAAK 112
++LM+EGRM+GQAF+ FP+ ++A +AL V+GYV KPM+IQF R+ P A+K
Sbjct: 460 IRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARSARPKPEASK 515
>gi|410989129|ref|XP_004000817.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 41 [Felis
catus]
Length = 593
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 359 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEXKGPPIQF 414
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ELA +AL+LVNGY +GK ++I+FG+N
Sbjct: 415 RMMTGRMRGQAFITFPNKELAQQALHLVNGYKLRGKILVIEFGKN 459
>gi|260817846|ref|XP_002603796.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
gi|229289119|gb|EEN59807.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
Length = 425
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L ++I L +FKNY+AG P LYIKN+AK D F++G D K
Sbjct: 298 GRLSHDDIRKLSVFKNYSAGEPNCRLYIKNVAKQTEEKDLRFIYGRYVNFDDDIEKEMFD 357
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ PS ++A +A+ NG+ GKP+++QF R +AKP
Sbjct: 358 IRLMKEGRMKGQAFIGLPSEKVAQKAVRDTNGFELNGKPLVVQFAR---SAKP 407
>gi|426257763|ref|XP_004022492.1| PREDICTED: RNA-binding protein 41 [Ovis aries]
Length = 413
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|386780672|ref|NP_001247510.1| RNA-binding protein 41 [Macaca mulatta]
gi|355705049|gb|EHH30974.1| RNA-binding motif protein 41 [Macaca mulatta]
gi|355757597|gb|EHH61122.1| RNA-binding motif protein 41 [Macaca fascicularis]
gi|380814358|gb|AFE79053.1| RNA-binding protein 41 isoform 1 [Macaca mulatta]
gi|383419697|gb|AFH33062.1| RNA-binding protein 41 isoform 1 [Macaca mulatta]
Length = 413
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAFVTFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|402911031|ref|XP_003918147.1| PREDICTED: RNA-binding protein 41 [Papio anubis]
Length = 413
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAFVTFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|440906239|gb|ELR56525.1| RNA-binding protein 41, partial [Bos grunniens mutus]
Length = 413
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|358423109|ref|XP_616173.4| PREDICTED: RNA-binding protein 41 isoform 1 [Bos taurus]
gi|359081799|ref|XP_002699929.2| PREDICTED: RNA-binding protein 41 [Bos taurus]
Length = 413
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|346465485|gb|AEO32587.1| hypothetical protein [Amblyomma maculatum]
Length = 423
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGS-LFGSIDAAKSGLI 60
G++ +E+ +FKNY G+ AS LYIKN+AK D F ++G + + + ++
Sbjct: 311 GRISSDEMRKASVFKNYEPGDVASRLYIKNVAKAATVQDLFLIYGGYINANSEQQRNAFD 370
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+T A RA NGY+ KGKP+++QF R+ A KP
Sbjct: 371 IRLMKEGRMKGQAFLTLAEESQADRARRDTNGYLLKGKPLVVQFARSAKARKP 423
>gi|317419755|emb|CBN81791.1| RNA-binding protein 40 [Dicentrarchus labrax]
Length = 511
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L +EI + +FKNY G P LY+KN+AK V D +++G S +A ++
Sbjct: 388 GRLSRDEIKRMSVFKNYEPGEPTCRLYVKNIAKQVEEKDLKYIYGRYINPSSEAERNMFD 447
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ LM+EGRM+GQAFV PS + A +AL NGYV KP+++QF R+
Sbjct: 448 IVLMKEGRMKGQAFVGLPSEQSAEKALRETNGYVLDDKPLVVQFARS 494
>gi|194228182|ref|XP_001492854.2| PREDICTED: RNA-binding protein 41 [Equus caballus]
Length = 413
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|405951102|gb|EKC19044.1| RNA-binding protein 40 [Crassostrea gigas]
Length = 488
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
GK+ E+ + +FKNY +G AS LYIKNLAK D ++GS + K+
Sbjct: 369 GKISKSEMKNFSVFKNYKSGEIASRLYIKNLAKQTTEQDLVNIYGSFVNWDKELEKNIFD 428
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
++LM+EGRM+GQAFVTF + AH+AL NG+V KPM +QF R+ A
Sbjct: 429 IRLMKEGRMKGQAFVTFSNETSAHKALKETNGFVLNSKPMAVQFARSAKA 478
>gi|344286338|ref|XP_003414916.1| PREDICTED: RNA-binding protein 41 [Loxodonta africana]
Length = 413
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPQVTEKDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAFVTFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|296470958|tpg|DAA13073.1| TPA: transformer-2 alpha-like [Bos taurus]
Length = 439
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 313 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 368
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 369 RMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 413
>gi|301788482|ref|XP_002929657.1| PREDICTED: RNA-binding protein 41-like [Ailuropoda melanoleuca]
Length = 484
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 358 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPGVTERDLV----SLFARFQEKKGPPIQF 413
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 414 RMMTGRMRGQAFITFPNKEIARQALYLVNGYKLRGKILVIEFGKN 458
>gi|335306381|ref|XP_003135343.2| PREDICTED: RNA-binding protein 41 [Sus scrofa]
Length = 412
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTEKDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|390480085|ref|XP_002807948.2| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 41 [Callithrix
jacchus]
Length = 437
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 311 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPAIQF 366
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY +G+ ++I+FG+N
Sbjct: 367 RMMTGRMRGQAFITFPNKEVAWQALHLVNGYKLRGRILVIEFGKN 411
>gi|281348278|gb|EFB23862.1| hypothetical protein PANDA_019892 [Ailuropoda melanoleuca]
Length = 411
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 285 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPGVTERDLV----SLFARFQEKKGPPIQF 340
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 341 RMMTGRMRGQAFITFPNKEIARQALYLVNGYKLRGKILVIEFGKN 385
>gi|340725133|ref|XP_003400928.1| PREDICTED: RNA-binding protein 40-like [Bombus terrestris]
Length = 468
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
LP+FKNY G P++ LYIKNL K V D F++ + V+LMQEGRM+G
Sbjct: 370 LPVFKNYHPGKPSNRLYIKNLTKQVEEKDLHFIYRKYIVPELKTEFEYDVRLMQEGRMKG 429
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
QAF+T +VE A ALN NG++ K KPM++QF +
Sbjct: 430 QAFITLQTVEQAQLALNETNGFILKDKPMVVQFAK 464
>gi|332226063|ref|XP_003262208.1| PREDICTED: RNA-binding protein 41 [Nomascus leucogenys]
Length = 413
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|283806648|ref|NP_060771.3| RNA-binding protein 41 isoform 1 [Homo sapiens]
gi|117949772|sp|Q96IZ5.2|RBM41_HUMAN RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|119623127|gb|EAX02722.1| hypothetical protein FLJ11016, isoform CRA_a [Homo sapiens]
gi|410223394|gb|JAA08916.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410259212|gb|JAA17572.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410291258|gb|JAA24229.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410337931|gb|JAA37912.1| RNA binding motif protein 41 [Pan troglodytes]
Length = 413
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|321474229|gb|EFX85194.1| hypothetical protein DAPPUDRAFT_313833 [Daphnia pulex]
Length = 437
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 1 MGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGS-LFGSIDAAKSGL 59
+ KL EEI LP+FKNY+AG P+S LY+KNLAK V D ++G + + + ++
Sbjct: 320 INKLQDEEIKLLPVFKNYSAGAPSSRLYVKNLAKTVKESDLKHIYGRYVLWTSEEERNMF 379
Query: 60 IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM EGRM+GQAF+T P+V+ A ALN N + +GKP+++ F R+
Sbjct: 380 DIRLMTEGRMKGQAFITLPNVDRAKEALNDTNWVMLQGKPLVVHFARS 427
>gi|350412501|ref|XP_003489669.1| PREDICTED: RNA-binding protein 40-like [Bombus impatiens]
Length = 468
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
LP+FKNY G P++ LYIKNL K V D F++ + V+LMQEGRM+G
Sbjct: 370 LPVFKNYHPGKPSNRLYIKNLTKQVEEKDLHFIYRKYIVPELKTEFEYDVRLMQEGRMKG 429
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
QAF+T +VE A ALN NG++ K KPM++QF +
Sbjct: 430 QAFITLQNVEQAQLALNETNGFILKDKPMVVQFAK 464
>gi|410908825|ref|XP_003967891.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like
[Takifugu rubripes]
Length = 505
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L +E+ + +FKNY AG P LY+KN+AK V D +++G S + ++
Sbjct: 383 GRLSRDEMKKISVFKNYEAGEPTCRLYVKNIAKQVEEKDLKYIYGRYINPSSEEERNMFD 442
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ LM+EGRM+GQAFV PS + A +AL NGY+ KP+I+QF R+
Sbjct: 443 IMLMKEGRMKGQAFVGLPSEQSAEKALRETNGYILYDKPLIVQFARS 489
>gi|283806598|ref|NP_001164551.1| RNA-binding protein 41 isoform 2 [Homo sapiens]
gi|332861373|ref|XP_521210.3| PREDICTED: RNA-binding protein 41 isoform 4 [Pan troglodytes]
gi|397497857|ref|XP_003819720.1| PREDICTED: RNA-binding protein 41 [Pan paniscus]
gi|426396991|ref|XP_004064712.1| PREDICTED: RNA-binding protein 41 [Gorilla gorilla gorilla]
gi|7023419|dbj|BAA91957.1| unnamed protein product [Homo sapiens]
gi|119623128|gb|EAX02723.1| hypothetical protein FLJ11016, isoform CRA_b [Homo sapiens]
gi|410291256|gb|JAA24228.1| RNA binding motif protein 41 [Pan troglodytes]
Length = 405
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|403289583|ref|XP_003935931.1| PREDICTED: RNA-binding protein 41 [Saimiri boliviensis boliviensis]
Length = 438
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 311 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 366
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 367 RMMTGRMRGQAFITFPNEEIAWQALHLVNGYKLHGKILVIEFGKN 411
>gi|90093337|ref|NP_001035019.1| RNA-binding protein 40 [Danio rerio]
gi|89130616|gb|AAI14289.1| RNA-binding region (RNP1, RRM) containing 3 [Danio rerio]
Length = 505
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L +EI L +FK Y G P LY+KN+AK V D F++G S + ++
Sbjct: 382 GRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFD 441
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+ LM+EGRM+GQAF+ PS A +AL NGYV K KP+++QF R +AKP
Sbjct: 442 IVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFAR---SAKP 491
>gi|348538447|ref|XP_003456702.1| PREDICTED: RNA-binding protein 40-like [Oreochromis niloticus]
Length = 508
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L +EI + +FKNY G P LY+KN+AK V + +++G S + ++
Sbjct: 385 GRLSRDEIKRMSVFKNYEPGEPTCRLYVKNIAKQVEEKELKYIYGRYINLSSEEERNMFD 444
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ LM+EGRM+GQAFV PSV+ A +AL NGYV KP+++QF R+
Sbjct: 445 IVLMKEGRMKGQAFVGLPSVQSAEKALQETNGYVLYDKPLVVQFARS 491
>gi|345807874|ref|XP_549173.3| PREDICTED: RNA-binding protein 41 [Canis lupus familiaris]
Length = 413
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRMRGQAF+TFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 343 RIMTGRMRGQAFITFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|241695301|ref|XP_002413045.1| conserved hypothetical protein [Ixodes scapularis]
gi|215506859|gb|EEC16353.1| conserved hypothetical protein [Ixodes scapularis]
Length = 440
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 9/118 (7%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGL-- 59
G++ EE+ +F+NY GNPAS LY+KN+AK V +D F ++G G +D KS L
Sbjct: 325 GRISSEEMRKASVFRNYEPGNPASRLYVKNVAKGVEVEDLFRIYG---GYVDL-KSELER 380
Query: 60 ---IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
++LM+EGRM+GQAF+TF S A RA NG++ KG+P+++ F R+ A P+
Sbjct: 381 YTFDIRLMKEGRMKGQAFLTFASESQAERARRDTNGFLLKGRPLVVHFARSAKAKGPA 438
>gi|351711954|gb|EHB14873.1| RNA-binding protein 41 [Heterocephalus glaber]
Length = 463
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 319 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIHF 374
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
M GRMRGQAF+TFPS E+A AL+L NGY GK ++I+FG+N +
Sbjct: 375 QMMTGRMRGQAFITFPSKEIAWEALHLANGYKLHGKILVIEFGKNKS 421
>gi|189235800|ref|XP_001808901.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Tribolium castaneum]
gi|270004699|gb|EFA01147.1| hypothetical protein TcasGA2_TC010372 [Tribolium castaneum]
Length = 424
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAK-SGLI 60
++P +++ LP+FKNY G P LYIKN+AK+ D +++ D S
Sbjct: 311 NQIPEKDLDVLPVFKNYHPGAPTCRLYIKNIAKNAELKDLEYIYNRYKVESDGENPSTFD 370
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
++LMQEGRM+GQAFVT SVE+A +AL N Y+ K KP+++ F R+ K
Sbjct: 371 IRLMQEGRMKGQAFVTLSSVEIAQKALKETNAYILKDKPLVVVFARSAPTKK 422
>gi|13937775|gb|AAH06986.1| RNA binding motif protein 41 [Homo sapiens]
Length = 413
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 387
>gi|170035116|ref|XP_001845417.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876969|gb|EDS40352.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 415
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 13/120 (10%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
++PP+++ LP+FKNYT G P++ LYIKNLAK V D ++ LF S ++ + +
Sbjct: 295 NRVPPDQLADLPVFKNYTPGAPSNKLYIKNLAKTVTEQDLTQIYA-LFTS--PGRADIQI 351
Query: 62 KLMQEGRMRGQAFVTFPSV---------ELA-HRALNLVNGYVFKGKPMIIQFGRNPAAA 111
KLMQ GRM+GQAFVTF E+ RA L NG++ + KPM++ +GR AA
Sbjct: 352 KLMQSGRMKGQAFVTFSYAYPEDLDGLGEMPIERARRLTNGFILRDKPMVVCYGRQEKAA 411
>gi|431905158|gb|ELK10209.1| RNA-binding protein 41 [Pteropus alecto]
Length = 535
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 409 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 464
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 465 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 509
>gi|395854600|ref|XP_003799771.1| PREDICTED: RNA-binding protein 41 [Otolemur garnettii]
Length = 413
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSKEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG++
Sbjct: 343 QMMTGRMRGQAFITFPNTEMACQALHLVNGYKLHGKILVIEFGKS 387
>gi|157108640|ref|XP_001650324.1| hypothetical protein AaeL_AAEL005083 [Aedes aegypti]
gi|108879289|gb|EAT43514.1| AAEL005083-PA [Aedes aegypti]
Length = 435
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 11/118 (9%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
++PP+++ LP+FKNYT G P++ LY+KNLAK V DD +F F + +K
Sbjct: 307 RIPPDQLTDLPVFKNYTPGEPSNKLYLKNLAKTVTEDDLKRIFHR-FAITGHPDREIDIK 365
Query: 63 LMQEGRMRGQAFVTFPSV----------ELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
LMQ GRM+GQAFVTF + + RAL L NG + K KPM++ +G++ AA
Sbjct: 366 LMQSGRMKGQAFVTFSYIYEEDLDLMEEKPIARALRLTNGLLLKDKPMVVAYGKSSAA 423
>gi|432108407|gb|ELK33158.1| RNA-binding protein 41, partial [Myotis davidii]
Length = 239
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K LI
Sbjct: 112 NRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPLIQ 167
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +A +L+NGY GK ++I+FG+N
Sbjct: 168 FRMMTGRMRGQAFITFPNKDIAWQAFHLINGYKLHGKILVIEFGKN 213
>gi|334350116|ref|XP_001378466.2| PREDICTED: RNA-binding protein 41-like [Monodelphis domestica]
Length = 550
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E+I +PMF +Y+ G P VLY+KNL+ V + SLF K LI
Sbjct: 424 RLSEEDIRKIPMFASYSPGEPNKVLYLKNLSPRVTEKELV----SLFARFQEKKGPLIQF 479
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRM+GQAFVTFP++E+A +AL LVNGY GK ++I+FG+N
Sbjct: 480 RVLTGRMKGQAFVTFPNMEMAQQALLLVNGYNLLGKTLVIEFGKN 524
>gi|345323736|ref|XP_001509729.2| PREDICTED: RNA-binding protein 40 [Ornithorhynchus anatinus]
Length = 516
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+LP EE+ SL +FK+Y G+P +Y+KNLAK V D F+FG S + +
Sbjct: 396 GRLPREEMESLSVFKSYEPGDPNCRIYVKNLAKQVQEKDLKFIFGRYVDFSSETERIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPDEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|332020742|gb|EGI61146.1| RNA-binding protein 40 [Acromyrmex echinatior]
Length = 450
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGS-LFGSIDAAKSGLIVKLMQEGRMR 70
LP+FKNY G P++ LYIKNLAK V D +++ + + A++ V+LMQEGRM+
Sbjct: 351 LPVFKNYHPGKPSNRLYIKNLAKQVEMKDLHYIYERYVIAGLKDAENEYDVRLMQEGRMK 410
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GQAF+T + A AL NGY+ K KPM++QF +
Sbjct: 411 GQAFITLQNAVQAKMALEETNGYILKDKPMVVQFAK 446
>gi|328779176|ref|XP_623250.3| PREDICTED: RNA-binding protein 40-like [Apis mellifera]
Length = 430
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 62/95 (65%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
LP+FKNY G P++ LYIKNLAK V D F++ S + V+LMQEGRM+G
Sbjct: 332 LPVFKNYHPGKPSNRLYIKNLAKQVEEKDLHFIYRKYIISELKTEFEYDVRLMQEGRMKG 391
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
QAF+T +VE A AL+ NG++ K KPM++QF +
Sbjct: 392 QAFITLQNVEQAQLALDETNGFILKDKPMVVQFAK 426
>gi|344275550|ref|XP_003409575.1| PREDICTED: RNA-binding protein 40 [Loxodonta africana]
Length = 517
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 397 GRISREEMETLSIFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVNFSSETERIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNETAAAKALREANGYVLFGKPMVVQFARS 503
>gi|297279397|ref|XP_001108341.2| PREDICTED: RNA-binding protein 40-like [Macaca mulatta]
Length = 511
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 390 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 449
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 450 IRLMKEGRMKGQAFIGLPNEKAATKALKEANGYVLFGKPMVVQFARS 496
>gi|380027506|ref|XP_003697464.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Apis
florea]
Length = 461
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSL-FGSIDAAKSGLIVKLMQEGRMR 70
LP+FKNY G P++ LYIKNLAK V D F+ ++ + + S V+LMQEGRM+
Sbjct: 362 LPVFKNYHPGKPSNRLYIKNLAKQVEEKDLHFIIENMXYQNXKQNLSKYDVRLMQEGRMK 421
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GQAF+T +VE A AL+ NG++ K KPM++QF +
Sbjct: 422 GQAFITLQNVEQAQLALDXTNGFILKDKPMVVQFAK 457
>gi|307165867|gb|EFN60222.1| RNA-binding protein 40 [Camponotus floridanus]
Length = 455
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLF-GSIDAAKSGLIVKLMQEGRMR 70
LP+FKNY G P++ LYIKNLAK V D +++ F ++ A+ V+L+QEGRM+
Sbjct: 356 LPVFKNYHPGIPSNRLYIKNLAKQVEIKDLHYIYKRYFIAGLEDAEDEYDVRLLQEGRMK 415
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GQAF+T ++ A +AL NGY+ K KPM++QF +
Sbjct: 416 GQAFITLQNISQAKKALKETNGYILKDKPMVVQFAK 451
>gi|346469585|gb|AEO34637.1| hypothetical protein [Amblyomma maculatum]
Length = 360
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L +EI LP F+NY+ GN VLY+KNL V + +LF D + +
Sbjct: 259 RLGLDEIKKLPRFQNYSPGNKNQVLYLKNLHHKVDIRELM----ALFCRFDEDTCTVKYR 314
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
L+ G++RGQAFVTFPS + A RAL L NGYV +GKP++I++GRN
Sbjct: 315 LLS-GKLRGQAFVTFPSTQAATRALELCNGYVLRGKPIVIEYGRN 358
>gi|432927341|ref|XP_004080978.1| PREDICTED: RNA-binding protein 40-like [Oryzias latipes]
Length = 500
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L +E+ + +FKNY AG P LY+KN++K V D +++G S + ++
Sbjct: 377 GRLAKDEMKRMSVFKNYGAGEPTCRLYVKNISKQVEEKDLRYIYGRYIDPSSEEERNMFD 436
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V LM+EGRM+GQAF+ P+ + A +AL NG+V KP+++QF R+
Sbjct: 437 VVLMKEGRMKGQAFIGLPNEQSAEKALRETNGFVLHDKPLVVQFARS 483
>gi|159163849|pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
EEI +PMF +Y G P VLY+KNL+ V D SLF K I M
Sbjct: 8 EEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQFRMMT 63
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 64 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104
>gi|440791045|gb|ELR12299.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 401
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/108 (49%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSG---L 59
+L EI LP F Y AG+P+ LYIKNLA+ +D +F S + + L
Sbjct: 278 RLALSEIRQLPRFAAYEAGSPSRTLYIKNLAETTTKEDLVRIFLSFQKPAEELRQDRDYL 337
Query: 60 IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GKPMIIQFGR 106
+L+Q GRMRGQAFVTFPSVE A AL VNG+VFK GKP+II +G+
Sbjct: 338 EFRLLQ-GRMRGQAFVTFPSVEDAVAALAAVNGFVFKEGKPLIIHYGK 384
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ +E+ +L +FKNY G+P +Y+KNL+K V D F+FG S + +
Sbjct: 390 GRISKKEMGTLSVFKNYEPGDPNCRIYVKNLSKQVQEKDLKFIFGRYVDFSSEVERIMFD 449
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P + A +AL VNGY+ KPM++QF R+ A KP
Sbjct: 450 IRLMKEGRMKGQAFIGLPDEKAATKALKEVNGYLLFDKPMVVQFARS-ARPKP 501
>gi|395535479|ref|XP_003769753.1| PREDICTED: RNA-binding protein 40 [Sarcophilus harrisii]
Length = 510
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +FK+Y G+P +Y+KNLAK V +D F+FG S +
Sbjct: 390 GRISKEEMETLSVFKSYEPGDPNCRIYVKNLAKQVEENDLKFIFGRYVDFSSQTERIMFD 449
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ FP + A +AL NGYV GKPM++QF R+
Sbjct: 450 IRLMKEGRMKGQAFIGFPDEKAAAKALKEANGYVLFGKPMVVQFARS 496
>gi|391339586|ref|XP_003744129.1| PREDICTED: RNA-binding protein 40-like [Metaseiulus occidentalis]
Length = 361
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 62/106 (58%)
Query: 1 MGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI 60
M +L ++ + F+NY G+ LY+KNL K ++ F VFG DA ++
Sbjct: 250 MERLSIKDSIDHAAFRNYEEGDVCVRLYLKNLHKSTTEEELFSVFGQFVPDNDAERAIFD 309
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+KLM+ GRMRGQAFVT+ SV A RAL L N + GKPM +QF +
Sbjct: 310 IKLMKSGRMRGQAFVTYGSVPAAERALELTNRVILNGKPMSVQFAK 355
>gi|334323863|ref|XP_001381889.2| PREDICTED: RNA-binding protein 40 [Monodelphis domestica]
Length = 510
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +FK+Y G+P +Y+KNLAK V +D F+FG S +
Sbjct: 390 GRISKEEMETLSVFKSYEPGDPNCRIYVKNLAKQVEENDLKFIFGRYVDFSSQTERIMFD 449
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ FP + A +AL NGYV GKPM++QF R+
Sbjct: 450 IRLMKEGRMKGQAFIGFPDEKAAAKALKEANGYVLFGKPMVVQFARS 496
>gi|383852802|ref|XP_003701914.1| PREDICTED: RNA-binding protein 40-like [Megachile rotundata]
Length = 427
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 60/95 (63%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
LP+FKNY G P++ LYIKNLAK V D F++ V+LMQEGRM+G
Sbjct: 329 LPVFKNYHPGKPSNRLYIKNLAKHVEEKDLHFIYRKYVIPDLKTDFEYDVRLMQEGRMKG 388
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
QAFVT +++ A AL+ NGY+ K KPM++QF +
Sbjct: 389 QAFVTLQNIDQAQLALDETNGYILKDKPMVVQFAK 423
>gi|338725221|ref|XP_003365101.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Equus
caballus]
Length = 580
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +LP+F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 460 GRISREEMETLPVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 519
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 520 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 566
>gi|349603263|gb|AEP99151.1| RNA-binding protein 40-like protein, partial [Equus caballus]
Length = 424
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +LP+F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 304 GRISREEMETLPVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 363
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 364 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 410
>gi|126320999|ref|XP_001372243.1| PREDICTED: RNA-binding protein 41-like [Monodelphis domestica]
Length = 415
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E+I +PMF +Y+ G P VLY+KNL+ V + SLF K I
Sbjct: 289 RLSQEDIRKIPMFASYSPGEPNKVLYLKNLSPRVTEKELV----SLFARFQEDKGTPIQF 344
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRM+GQAF+TFPS E+A +AL LVNGY GK ++I+FG++
Sbjct: 345 RVLTGRMKGQAFITFPSTEMAQQALLLVNGYNLLGKTLVIEFGKH 389
>gi|327283480|ref|XP_003226469.1| PREDICTED: RNA-binding protein 41-like [Anolis carolinensis]
Length = 370
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +P F +Y G P+ VLY+KNL++ V +D VF K G ++
Sbjct: 211 RLSEEEIRQIPRFASYDPGEPSQVLYLKNLSRQVTVEDLMSVFARF-----QEKEGPQIR 265
Query: 63 L-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+ GRMRGQAF+TFPS+ +A AL L +GY GKP++I+FG++ +P
Sbjct: 266 FRLLSGRMRGQAFLTFPSISVAQAALQLASGYHLLGKPLVIEFGKSKGRPEP 317
>gi|390351660|ref|XP_783188.3| PREDICTED: RNA-binding protein 40-like [Strongylocentrotus
purpuratus]
Length = 530
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI-V 61
+L EEI + +FKNYT G P + LY+KNLAK + D F+FG + +
Sbjct: 399 RLSKEEIKHISVFKNYTPGEPTTRLYVKNLAKQIEEKDLKFIFGRYVDWTSPLDKDMFNI 458
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+LM++GRM+GQAFV PS A RAL NG + KP+++ F R +AKP
Sbjct: 459 QLMKQGRMKGQAFVGLPSELAAQRALRDTNGLLVHDKPIVVSFAR---SAKP 507
>gi|395545742|ref|XP_003774757.1| PREDICTED: RNA-binding protein 41, partial [Sarcophilus harrisii]
Length = 465
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E+I +PMF +Y G P VLY+KNL+ V + SLF K I
Sbjct: 339 RLSEEDIRKIPMFASYNPGEPNKVLYLKNLSPRVTEKELV----SLFARFQEKKGPPIQF 394
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRM+GQAFVTFP++E+A +AL LVNGY GK ++I+FG+N
Sbjct: 395 RVLTGRMKGQAFVTFPNMEMAQQALLLVNGYNLLGKTLVIEFGKN 439
>gi|355558218|gb|EHH14998.1| hypothetical protein EGK_01023, partial [Macaca mulatta]
Length = 461
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQ 65
+E+ +L +F++Y G P +Y+KNLAK V D ++FG S + + ++LM+
Sbjct: 346 KEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK 405
Query: 66 EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 406 EGRMKGQAFIGLPNEKAATKALKEANGYVLFGKPMVVQFARS 447
>gi|196005337|ref|XP_002112535.1| hypothetical protein TRIADDRAFT_8568 [Trichoplax adhaerens]
gi|190584576|gb|EDV24645.1| hypothetical protein TRIADDRAFT_8568, partial [Trichoplax
adhaerens]
Length = 96
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
EEI ++ F +Y G P+ VLYIKNL+ V D F G + +K + +LM+
Sbjct: 1 EEIRAMARFAHYEQGEPSKVLYIKNLSDKVNEKDLVMTF---IGFQEDSKDNIRFRLMK- 56
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
G+M+GQAFVTF V A +AL++VNGY KGKPM+IQ+G+
Sbjct: 57 GKMKGQAFVTFSDVATAGKALDVVNGYKLKGKPMVIQYGK 96
>gi|157821519|ref|NP_001102890.1| RNA binding motif protein 41 [Rattus norvegicus]
gi|149022081|gb|EDL78975.1| rCG26849, isoform CRA_a [Rattus norvegicus]
Length = 413
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ V D SLF K LI
Sbjct: 287 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPLIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 343 QMMTGRMRGQAFITFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>gi|307210931|gb|EFN87246.1| Tetratricopeptide repeat protein 26 [Harpegnathos saltator]
Length = 1038
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGS-LFGSIDAAKSGLIVKLMQEGRMR 70
LP+FKNY G P++ LYIKNLAK V D +++ + + A++ ++LMQEGRM+
Sbjct: 377 LPVFKNYHPGKPSNRLYIKNLAKQVEAKDLHYIYQRYVIAGLKDAENEYDMRLMQEGRMK 436
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
GQAF+T + A AL+ NGY+ K KPM+I PA+++
Sbjct: 437 GQAFITLQNNVQAQMALDETNGYILKDKPMVILSRAKPASSE 478
>gi|326918852|ref|XP_003205700.1| PREDICTED: RNA-binding protein 41-like [Meleagris gallopavo]
Length = 305
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EE+ ++P F +Y G P VLY+KNL V D SLF S I
Sbjct: 183 RLSEEELRNIPRFSSYHPGEPNKVLYVKNLGPRVTMKDLV----SLFARFQQEDSRPIQF 238
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRMRGQAF+TFP ++ A A+ LVNGY +GKPM+I+FG++
Sbjct: 239 RLLSGRMRGQAFITFPDIQSAQDAMLLVNGYRLQGKPMVIEFGKS 283
>gi|348563749|ref|XP_003467669.1| PREDICTED: RNA-binding protein 41-like [Cavia porcellus]
Length = 460
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF I
Sbjct: 334 RLSVEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKTGPPIQF 389
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
M GRMRGQAF+TFP + A AL+LVNGY GK ++I+FG+
Sbjct: 390 QMMTGRMRGQAFITFPDKKKAWEALHLVNGYKLHGKILVIEFGK 433
>gi|345328442|ref|XP_001514134.2| PREDICTED: RNA-binding protein 41-like [Ornithorhynchus anatinus]
Length = 411
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +P F +Y+ G P+ VLY+KNL+ V + SLF + I
Sbjct: 285 RLSEEEIRKIPRFSSYSPGEPSKVLYLKNLSPRVTGKELV----SLFARFQEKEGPQIQF 340
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRMRGQAF+TFPS ELA +AL LVNG+ GK ++I+FG+N
Sbjct: 341 RLLTGRMRGQAFITFPSTELAQQALLLVNGFNLLGKTLVIEFGKN 385
>gi|354490313|ref|XP_003507303.1| PREDICTED: RNA-binding protein 41-like [Cricetulus griseus]
Length = 413
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRNIPMFSAYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRMRGQAF+TFP+ ++A +A++ +NGY GK ++I+FG+N
Sbjct: 343 QIMSGRMRGQAFITFPNKDIAWQAVHQINGYKLHGKILVIEFGKN 387
>gi|449499257|ref|XP_002187011.2| PREDICTED: RNA-binding protein 41 [Taeniopygia guttata]
Length = 296
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EE+ +P F +Y G P+ VLY+KNL V D SLF S LI
Sbjct: 173 RLSEEELRKIPRFSSYHPGEPSKVLYLKNLGPRVTVKDLV----SLFARFQEEDSPLIQF 228
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ GRMRGQAF+TFP + A AL L+NGY +GKP++I FG++
Sbjct: 229 RLLSGRMRGQAFITFPDMGSAQSALQLLNGYKLQGKPLVIAFGKS 273
>gi|351699567|gb|EHB02486.1| RNA-binding protein 40 [Heterocephalus glaber]
Length = 517
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ SL +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 397 GRISREEMESLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGY+ GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYILFGKPMVVQFARS 503
>gi|363732706|ref|XP_426256.3| PREDICTED: RNA-binding protein 41 [Gallus gallus]
Length = 398
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EE+ S+P F +Y G P VLY+KNL V D SLF + + +
Sbjct: 276 RLSEEELRSIPRFSSYHPGEPNKVLYVKNLGPRVTMKDMV----SLFARFQQDSTPIQFR 331
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
L+ GRMRGQAF+TFP ++ A A+ LVNGY +GKPM+I+FG++
Sbjct: 332 LLS-GRMRGQAFITFPDIQSAQDAMLLVNGYRLQGKPMVIEFGKS 375
>gi|158287033|ref|XP_560309.3| AGAP005296-PA [Anopheles gambiae str. PEST]
gi|157019820|gb|EAL41703.3| AGAP005296-PA [Anopheles gambiae str. PEST]
Length = 407
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 16/120 (13%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
++P E+ +L +F+NY+ G+P + LYIKNL+K V + +FG F + + KS + +
Sbjct: 289 NRIPEEQRSTLNVFQNYSRGDPTTKLYIKNLSKQVTEQELEELFGIFFNA-NLLKS-MEI 346
Query: 62 KLMQEGRMRGQAFVTFPSVELA--------------HRALNLVNGYVFKGKPMIIQFGRN 107
KLM+ GRM+GQAFVTF VE A +AL VNGY+ K KPM++ +G++
Sbjct: 347 KLMKTGRMKGQAFVTFVPVEDATEGEPLNEKFKNCIDQALATVNGYILKDKPMVVSYGKS 406
>gi|198425302|ref|XP_002121929.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Ciona intestinalis]
Length = 473
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSL--FGSIDAAKSGL 59
G+L ++ +FK Y G P+ LY+KNL K D F+FG+ F + D AK
Sbjct: 360 GRLSSKQRSDNSLFKGYKLGEPSCRLYVKNLPKKATDKDMKFIFGAFVDFSNEDEAKM-F 418
Query: 60 IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V++M +GRM+GQAF+ PSV+ A +AL NGY GKPMI+ + R+
Sbjct: 419 DVRVMTQGRMKGQAFIGMPSVDSATKALQATNGYTLIGKPMIVMYARS 466
>gi|311254710|ref|XP_003125931.1| PREDICTED: RNA-binding protein 40-like [Sus scrofa]
gi|350583601|ref|XP_003481551.1| PREDICTED: RNA-binding protein 40 [Sus scrofa]
Length = 515
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 455 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 501
>gi|301790935|ref|XP_002930470.1| PREDICTED: RNA-binding protein 40-like, partial [Ailuropoda
melanoleuca]
Length = 589
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 469 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 528
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 529 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 575
>gi|410967851|ref|XP_003990427.1| PREDICTED: RNA-binding protein 40 [Felis catus]
Length = 517
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|296489386|tpg|DAA31499.1| TPA: RNA-binding protein 40 [Bos taurus]
Length = 516
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|348586942|ref|XP_003479227.1| PREDICTED: RNA-binding protein 40-like [Cavia porcellus]
Length = 517
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|426216081|ref|XP_004002297.1| PREDICTED: RNA-binding protein 40 [Ovis aries]
Length = 517
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|440904280|gb|ELR54816.1| RNA-binding protein 40 [Bos grunniens mutus]
Length = 517
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|116004451|ref|NP_001070585.1| RNA-binding protein 40 [Bos taurus]
gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|75775276|gb|AAI05166.1| RNA-binding region (RNP1, RRM) containing 3 [Bos taurus]
Length = 516
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|355717002|gb|AES05792.1| RNA-binding region containing 3 [Mustela putorius furo]
Length = 513
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 394 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 453
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 454 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 500
>gi|291398403|ref|XP_002715872.1| PREDICTED: RNA-binding region (RNP1, RRM) containing 3 [Oryctolagus
cuniculus]
Length = 516
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 396 GRISREEMEALSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|443687814|gb|ELT90688.1| hypothetical protein CAPTEDRAFT_200790 [Capitella teleta]
Length = 440
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI- 60
G+L +E+ +FK Y +G P + LYIKNL+K V D ++G + + + + L+
Sbjct: 323 GRLSEKEMREYFVFKKYDSGEPTTRLYIKNLSKAVTEKDLHHIYGR-YVNWENEQDRLMF 381
Query: 61 -VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFVT PSV A +A+ + ++ KP+++QF R +AKP
Sbjct: 382 DMRLMKEGRMKGQAFVTLPSVSQAEKAVRETHAFLLIDKPLVVQFAR---SAKP 432
>gi|417402186|gb|JAA47947.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 517
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|74218798|dbj|BAE37811.1| unnamed protein product [Mus musculus]
Length = 425
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 299 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 354
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 355 RMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 399
>gi|50511129|dbj|BAD32550.1| mKIAA1839 protein [Mus musculus]
Length = 462
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 343 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 402
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 403 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 452
>gi|432103902|gb|ELK30735.1| RNA-binding protein 40 [Myotis davidii]
Length = 515
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 396 GRVSREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|16741598|gb|AAH16603.1| Rnpc3 protein [Mus musculus]
Length = 258
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 139 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 198
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 199 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 248
>gi|345801621|ref|XP_547257.3| PREDICTED: RNA-binding protein 40 [Canis lupus familiaris]
Length = 518
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 398 GRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 457
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 458 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 504
>gi|50949388|emb|CAB70897.2| hypothetical protein [Homo sapiens]
Length = 292
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 172 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 231
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 232 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 281
>gi|339239559|ref|XP_003381334.1| transcription factor E2F5 [Trichinella spiralis]
gi|316975642|gb|EFV59050.1| transcription factor E2F5 [Trichinella spiralis]
Length = 879
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
++ E++ LP FKNY+ G S LY+KNL+K V + +FG+ + ++ VK
Sbjct: 773 RVDQEQMKLLPAFKNYSPGERCSRLYVKNLSKRVTDAEMRRIFGNFVQNAESEHQ-FHVK 831
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++Q GR+ GQAF+ F SVE A AL NGY+ GKPM++ F R+
Sbjct: 832 VIQTGRLHGQAFLAFGSVEEAEAALQSCNGYILHGKPMVVAFSRS 876
>gi|414866588|tpg|DAA45145.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 396
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/44 (88%), Positives = 41/44 (93%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFG 46
KLPPEEILSLPMFKNYT GNPASVLYIKNLAKDV DDF++VFG
Sbjct: 339 KLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVTHDDFYYVFG 382
>gi|355715801|gb|AES05406.1| RNA binding motif protein 41 [Mustela putorius furo]
Length = 158
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 64 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 119
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101
M GRMRGQAF+TFPS E+A +AL LVNGY +GK ++
Sbjct: 120 RMMTGRMRGQAFITFPSKEIARQALYLVNGYKLRGKILV 158
>gi|71051116|gb|AAH98742.1| Rnpc3 protein [Rattus norvegicus]
Length = 423
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 304 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 363
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 364 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 413
>gi|23956384|ref|NP_705814.1| RNA-binding protein 41 isoform 2 [Mus musculus]
gi|81914521|sp|Q8JZV4.1|RBM41_MOUSE RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|22477722|gb|AAH37024.1| RNA binding motif protein 41 [Mus musculus]
gi|26351139|dbj|BAC39206.1| unnamed protein product [Mus musculus]
gi|26351197|dbj|BAC39235.1| unnamed protein product [Mus musculus]
gi|148691973|gb|EDL23920.1| RNA binding motif protein 41, isoform CRA_a [Mus musculus]
Length = 413
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 343 RMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>gi|197099048|ref|NP_001126576.1| RNA-binding protein 40 [Pongo abelii]
gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|55731961|emb|CAH92689.1| hypothetical protein [Pongo abelii]
Length = 517
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|288541344|ref|NP_001165618.1| RNA-binding protein 41 isoform 1 [Mus musculus]
Length = 425
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 299 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 354
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 355 RMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 399
>gi|189303595|ref|NP_001094280.1| RNA-binding protein 40 [Rattus norvegicus]
gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|149025759|gb|EDL82002.1| rCG28478 [Rattus norvegicus]
gi|183986085|gb|AAI66571.1| Rnpc3 protein [Rattus norvegicus]
Length = 515
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|239781821|pdb|3EGN|A Chain A, C-Terminal Rna Recognition Motif Of The U11U12 65K PROTEIN
Length = 143
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 23 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 82
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 83 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 132
>gi|403283796|ref|XP_003933288.1| PREDICTED: RNA-binding protein 40-like [Saimiri boliviensis
boliviensis]
Length = 515
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 455 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 501
>gi|395821637|ref|XP_003784144.1| PREDICTED: RNA-binding protein 40 [Otolemur garnettii]
Length = 516
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|31981077|ref|NP_080319.2| RNA-binding protein 40 [Mus musculus]
gi|84662758|ref|NP_001033785.1| RNA-binding protein 40 [Mus musculus]
gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|27695046|gb|AAH43695.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
gi|148680462|gb|EDL12409.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
Length = 514
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 455 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 504
>gi|14017895|dbj|BAB47468.1| KIAA1839 protein [Homo sapiens]
Length = 541
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 421 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 480
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 481 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 527
>gi|402855450|ref|XP_003892337.1| PREDICTED: RNA-binding protein 40 [Papio anubis]
Length = 518
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|397495807|ref|XP_003818737.1| PREDICTED: RNA-binding protein 40 [Pan paniscus]
Length = 518
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 398 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 457
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 458 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 504
>gi|332809668|ref|XP_003308296.1| PREDICTED: RNA-binding protein 40 isoform 1 [Pan troglodytes]
gi|410214446|gb|JAA04442.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410307708|gb|JAA32454.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410328887|gb|JAA33390.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
Length = 517
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|158260711|dbj|BAF82533.1| unnamed protein product [Homo sapiens]
Length = 516
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
>gi|40538732|ref|NP_060089.1| RNA-binding protein 40 [Homo sapiens]
gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 65 kDa protein; Short=U11/U12
snRNP 65 kDa protein; Short=U11/U12-65K
gi|16553747|dbj|BAB71580.1| unnamed protein product [Homo sapiens]
gi|37543954|gb|AAM45139.1| RNA recognition protein [Homo sapiens]
gi|48427628|tpg|DAA05493.1| TPA_exp: U11/U12 snRNP 65K [Homo sapiens]
gi|56969191|gb|AAH10697.2| RNA-binding region (RNP1, RRM) containing 3 [Homo sapiens]
gi|119593307|gb|EAW72901.1| hCG2044817 [Homo sapiens]
gi|119593311|gb|EAW72905.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|119593312|gb|EAW72906.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|208965476|dbj|BAG72752.1| RNA-binding region (RNP1, RRM) containing 3 [synthetic construct]
Length = 517
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|441637137|ref|XP_003282014.2| PREDICTED: RNA-binding protein 40 [Nomascus leucogenys]
Length = 517
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|296208669|ref|XP_002751197.1| PREDICTED: RNA-binding protein 40 [Callithrix jacchus]
Length = 517
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|354505577|ref|XP_003514844.1| PREDICTED: RNA-binding protein 40-like [Cricetulus griseus]
Length = 356
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 237 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 296
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 297 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 346
>gi|47218419|emb|CAG12690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G+L +E+ + MF+NY G P LY+KN+AK D +++G S + ++
Sbjct: 380 GRLSKDEMKKISMFRNYEPGEPTCRLYVKNIAKQAEEKDLKYIYGRYIDPSSEPERNMFD 439
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ LM+EGRM+GQAFV PS + A +AL NGYV KP+I++ ++
Sbjct: 440 IMLMKEGRMKGQAFVGLPSEQSAEKALRETNGYVLYDKPLIVRLTKS 486
>gi|449513149|ref|XP_002190841.2| PREDICTED: RNA-binding protein 40-like, partial [Taeniopygia
guttata]
Length = 200
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
+L EE+ +FKNY G+P +Y+KNLAK V D F+FG + ++
Sbjct: 80 NRLSREEMEKYSVFKNYEPGDPNCRIYVKNLAKQVQEKDLKFIFGRYVDFQSEVERNMFD 139
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R +A+P
Sbjct: 140 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFAR---SARP 189
>gi|74140935|dbj|BAE22060.1| unnamed protein product [Mus musculus]
Length = 514
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y KNLA+ V D F+FG S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYEKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 455 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 504
>gi|449268122|gb|EMC78992.1| RNA-binding protein 40, partial [Columba livia]
Length = 449
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
+L EE+ +FKNY G+P +Y+KNLAK V D F+FG + ++
Sbjct: 329 NRLSREEMEKFSVFKNYEPGDPNCRIYVKNLAKQVQEKDLKFIFGRYVNFQSEEERNMFD 388
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R +A+P
Sbjct: 389 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFAR---SARP 438
>gi|224057266|ref|XP_002187421.1| PREDICTED: RNA-binding protein 40 [Taeniopygia guttata]
Length = 458
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
+L EE+ +FKNY G+P +Y+KNLAK V D F+FG + ++
Sbjct: 338 NRLSREEMEKYSVFKNYEPGDPNCRVYVKNLAKQVQEKDLKFIFGRYVDFQSEVERNMFD 397
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R +A+P
Sbjct: 398 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFAR---SARP 447
>gi|340369585|ref|XP_003383328.1| PREDICTED: RNA-binding protein 40-like [Amphimedon queenslandica]
Length = 434
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 14 MFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQ 72
+FKNY+ G P+ LYIKNL+K D ++G S + + V++MQ+GRM+GQ
Sbjct: 329 VFKNYSKGEPSMRLYIKNLSKQATEKDLTRIYGRYINWSSEVERHSFDVRVMQQGRMKGQ 388
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
AF+ P+ E+ +AL GY KPM++QF R+ A +
Sbjct: 389 AFIGMPNEEITSKALADTLGYKLYDKPMVVQFARSTKAKE 428
>gi|330794186|ref|XP_003285161.1| hypothetical protein DICPUDRAFT_149032 [Dictyostelium purpureum]
gi|325084882|gb|EGC38300.1| hypothetical protein DICPUDRAFT_149032 [Dictyostelium purpureum]
Length = 496
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 56/87 (64%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P++ LYIKN++K V DF +F +LF S ++ KS L + Q GR+ GQAF+TFP+
Sbjct: 407 GEPSNKLYIKNISKHVKSSDFESLFRTLFDSAESMKSNLHIDYHQGGRLHGQAFITFPTT 466
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRN 107
ELA AL GY F KP+II F +N
Sbjct: 467 ELAITALQQSQGYKFNQKPIIICFSKN 493
>gi|328708090|ref|XP_003243595.1| PREDICTED: hypothetical protein LOC100569873 [Acyrthosiphon pisum]
Length = 379
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
K+ +++ ++P F+NY G P+ VLY+KN+AK V VFG + + ++ +
Sbjct: 278 KINEDQLKTIPYFQNYQKGIPSKVLYVKNIAKSVCEKHLVSVFGKY---KELQNADIVYR 334
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
M++G+M+GQAF+ F +E+A +AL G + + KP+IIQFG+
Sbjct: 335 YMKKGKMKGQAFIEFEKIEVAEKALEENLGLILEEKPLIIQFGK 378
>gi|326924974|ref|XP_003208697.1| PREDICTED: RNA-binding protein 40-like [Meleagris gallopavo]
Length = 498
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
+L EE+ +FKNY G P +Y+KNLAK V D F+FG + ++
Sbjct: 378 NRLSREEMEKFSVFKNYEPGEPNCRIYVKNLAKQVQEKDLKFIFGRYVDFESELERNMFD 437
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R +A+P
Sbjct: 438 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFAR---SARP 487
>gi|328772571|gb|EGF82609.1| hypothetical protein BATDEDRAFT_86091 [Batrachochytrium
dendrobatidis JAM81]
Length = 401
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 9 ILSLPMFKNYTAGNPASVLYIKNLAKDVVPDD-FFFVFGSLFGSIDAAKSGLIVKLMQEG 67
+L LP +KNY G+P+ L+IKN+ V D +F + S ++ + V+LM++G
Sbjct: 302 LLQLPAYKNYNQGSPSKTLFIKNINYKRVSDSQLLNLFSKILPSSSLPENRIDVRLMKKG 361
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+M+GQAFV + + +LA ALNL +G + + KPM+IQFG+
Sbjct: 362 KMKGQAFVKYETTKLAETALNLFHGLILEEKPMVIQFGK 400
>gi|118094273|ref|XP_422302.2| PREDICTED: RNA-binding protein 40 [Gallus gallus]
Length = 550
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSL--FGSIDAAKSGLI 60
+L EE+ +FKNY G P +Y+KNLAK V D F+FG F S+ ++
Sbjct: 431 RLSREEMEKFSVFKNYEPGEPNCRIYVKNLAKQVQEKDLKFIFGRYVDFQSV-LERNMFD 489
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R +A+P
Sbjct: 490 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFAR---SARP 539
>gi|444724714|gb|ELW65312.1| Pancreatic alpha-amylase [Tupaia chinensis]
Length = 1003
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI- 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D ++FG A+ +
Sbjct: 358 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKYIFGRYVDFTSEAQRIMFD 417
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
++LM+EGRM+GQAF+ P+ + A +AL NGYV G+PM++Q G + S
Sbjct: 418 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGRPMVVQLGEEGVGEEAS 471
>gi|302773161|ref|XP_002969998.1| hypothetical protein SELMODRAFT_92344 [Selaginella moellendorffii]
gi|302799422|ref|XP_002981470.1| hypothetical protein SELMODRAFT_114507 [Selaginella moellendorffii]
gi|300151010|gb|EFJ17658.1| hypothetical protein SELMODRAFT_114507 [Selaginella moellendorffii]
gi|300162509|gb|EFJ29122.1| hypothetical protein SELMODRAFT_92344 [Selaginella moellendorffii]
Length = 83
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+ VLY+KNL +V +D +F D ++ +LMQ+GRM+GQAFVTFP V A
Sbjct: 1 SQVLYVKNLCSEVTEEDLAALFLRFKKQPD---DQILFRLMQKGRMKGQAFVTFPDVVAA 57
Query: 84 HRALNLVNGYVFKGKPMIIQFGR 106
RAL LV+GY+ KG+PMI+++ R
Sbjct: 58 TRALQLVHGYMLKGRPMIVEYAR 80
>gi|227204327|dbj|BAH57015.1| AT1G09230 [Arabidopsis thaliana]
Length = 375
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFG 46
G+LPP++ILSLPMFKNYTAGNP+ VLYIKNLAKDVV DDF+++F
Sbjct: 329 GRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFA 373
>gi|195431872|ref|XP_002063952.1| GK15943 [Drosophila willistoni]
gi|194160037|gb|EDW74938.1| GK15943 [Drosophila willistoni]
Length = 402
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 7/109 (6%)
Query: 1 MGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI 60
M +L E+ +LP+++NY G P+ LYIKNL K+V ++G ++D L
Sbjct: 292 MERLSLSELEALPIYRNYQEGIPSHKLYIKNLFKNVNEQQLLELYGKYVTTVDH----LE 347
Query: 61 VKLMQEGRMRGQAFVTFP---SVELAHRALNLVNGYVFKGKPMIIQFGR 106
+K+MQ+GRM+GQAFVTF + + +AL+ NG V++ KPMI+ +G+
Sbjct: 348 IKVMQQGRMKGQAFVTFNEEVNQSIVAQALSETNGLVWQQKPMIVCYGK 396
>gi|196009462|ref|XP_002114596.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
gi|190582658|gb|EDV22730.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
Length = 466
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAK-SGLIVKLMQE 66
E+ L +++NY P LYIKNL+ V D +++ D + V+L+
Sbjct: 361 ELQKLSVYQNYERKEPTGRLYIKNLSDKVKESDLIYIYSRFINKDDNSHLDRFDVRLLTR 420
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GRM+GQAFV P +A A+N +GYV GKPMI+ F +
Sbjct: 421 GRMKGQAFVNLPDEVVATEAVNETHGYVLHGKPMIVDFAQ 460
>gi|169146105|emb|CAQ15372.1| novel protein [Danio rerio]
Length = 425
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E I ++P FKNY G P+ VL +KN++ P SLF +S I+ +
Sbjct: 302 EAIRNIPRFKNYQRGKPSKVLCVKNIS----PQASLAQLVSLFSRFQKDESQPILYRLLT 357
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GR++GQAF+T P ++A AL+L+NGY KP++I+FGR
Sbjct: 358 GRLKGQAFITLPDAKIAQAALDLLNGYKLLEKPLVIEFGR 397
>gi|74145491|dbj|BAE36180.1| unnamed protein product [Mus musculus]
Length = 513
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++ F R +A+P
Sbjct: 455 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV-FAR---SARP 503
>gi|431896426|gb|ELK05838.1| Alpha-amylase 1 [Pteropus alecto]
Length = 937
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 381 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETERIMFD 440
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 441 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 482
>gi|328872570|gb|EGG20937.1| RNA recognition motif-containing protein [Dictyostelium
fasciculatum]
Length = 454
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 60/110 (54%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
++P +E+ + K G + LY+KNL+KDVV D ++FG F S +
Sbjct: 321 QIPLDELEKNVLKKKLEIGQESKRLYLKNLSKDVVLADLEYIFGRYFASKKEMNDNCQIT 380
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
GR++ QAFV F S +A+ ALN V GY K KP+IIQ+G++ K
Sbjct: 381 HFNSGRLKNQAFVVFSSQSIANDALNQVQGYNLKNKPIIIQYGKHSNVTK 430
>gi|384499818|gb|EIE90309.1| hypothetical protein RO3G_15020 [Rhizopus delemar RA 99-880]
Length = 294
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 4 LPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL 63
L E+ P FK Y AG P++ LYIKNL K D ++ + I V L
Sbjct: 197 LASHELAQWPAFKAYDAGEPSARLYIKNLHKKCSEQDLQQIYSAFSKDIQ-------VNL 249
Query: 64 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M++G++R QAFVTFP ++A AL NGYV +PM + F ++
Sbjct: 250 MRKGKLRDQAFVTFPDEKVAKLALESTNGYVLHDRPMAVLFSKS 293
>gi|85857696|gb|ABC86383.1| IP10959p [Drosophila melanogaster]
Length = 407
Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L + +LP++KNY G+P++ LYIKNLAK V ++ A S L +K
Sbjct: 304 RLSTSALEALPVYKNYKTGDPSNKLYIKNLAKSVDEQQLRELYAKY-----TAASKLDIK 358
Query: 63 LMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF E+ +ALN NG ++ KPMI+ +G+
Sbjct: 359 VMQQGRMKGQAFVTFLDANNPEIIAQALNETNGLLWHDKPMIVCYGK 405
>gi|194882084|ref|XP_001975143.1| GG22156 [Drosophila erecta]
gi|190658330|gb|EDV55543.1| GG22156 [Drosophila erecta]
Length = 397
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L ++ +LP++KNY G+P++ LYIKNL K V ++ A S L +K
Sbjct: 294 RLSTSKLEALPVYKNYKTGDPSNKLYIKNLEKSVDEQQLRELYAKY-----TASSNLDIK 348
Query: 63 LMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF ++ RALN NG + KPMI+ +G+
Sbjct: 349 VMQQGRMKGQAFVTFLEANNPDIIARALNETNGLLVHDKPMIVCYGK 395
>gi|76162613|gb|AAX30555.2| SJCHGC05002 protein [Schistosoma japonicum]
Length = 152
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGL-- 59
+L E+ P+F Y AG P S LY+KNL++ V D F +FG +F + +S
Sbjct: 22 NRLKAEDHNKYPVFAKYDAGTPTSRLYLKNLSQTVTETDLFVIFG-VFSNGPVTESSWKP 80
Query: 60 ----------IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
++L+ EGRM+GQAF+ A +AL NGY+ +P+++QF R
Sbjct: 81 IIPLESTEYFSIRLLTEGRMKGQAFIGLACESTAKQALEATNGYMLYDRPIVVQFARGAK 140
Query: 110 A 110
A
Sbjct: 141 A 141
>gi|195486292|ref|XP_002091444.1| GE12236 [Drosophila yakuba]
gi|194177545|gb|EDW91156.1| GE12236 [Drosophila yakuba]
Length = 408
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E+ +LP++KNY G+P++ LYIKNL K V ++ A S L +K
Sbjct: 305 RLSTSELEALPVYKNYKTGDPSNKLYIKNLEKSVDEQQLRELYAKY-----TAPSNLDIK 359
Query: 63 LMQEGRMRGQAFVTF---PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF + E+ +AL+ NG ++ KPMI+ +G+
Sbjct: 360 VMQQGRMKGQAFVTFIEGNNPEIIAQALSETNGLLWHDKPMIVCYGK 406
>gi|195154278|ref|XP_002018049.1| GL16971 [Drosophila persimilis]
gi|194113845|gb|EDW35888.1| GL16971 [Drosophila persimilis]
Length = 386
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L +E+ +LP++KNY G+P++ LYIKNL K++ + ++ L +K
Sbjct: 283 RLSIQELEALPVYKNYNEGDPSNKLYIKNLHKNIGEEQLRELYSQY-----TTPENLEIK 337
Query: 63 LMQEGRMRGQAFVTF---PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF P E+ AL+ NG +++ KPMI+ +G+
Sbjct: 338 VMQQGRMKGQAFVTFIHLPDPEVIATALDETNGLLWEQKPMIVCYGK 384
>gi|358335678|dbj|GAA40549.2| U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial
[Clonorchis sinensis]
Length = 466
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 3 KLPPEEILSLPMF-KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSL-FGSI-------- 52
+L PEE + +F KNY+AG P S LYIKNLA V D VFG FG +
Sbjct: 337 RLSPEERQNYAVFSKNYSAGEPTSRLYIKNLAPSVTEHDLHRVFGVFQFGLVKDLNFKPA 396
Query: 53 --DAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
++ ++L+ EGRM+GQAFV+ A +AL NG + +PM++QF R A
Sbjct: 397 VPSSSTDRFSIRLLTEGRMKGQAFVSLDGELTAAQALEATNGLLLHDRPMVVQFARGAKA 456
>gi|410914938|ref|XP_003970944.1| PREDICTED: RNA-binding protein 41-like [Takifugu rubripes]
Length = 375
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E I S+P F+ Y G P+ VL +KNL++ +LF + ++ +
Sbjct: 269 EGIRSIPRFQKYQPGKPSKVLCVKNLSRQASVAQLV----ALFSRFERENRPPVLYRLLT 324
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GRMRGQAF+T P VE A AL +V+GY GKP++++FGR
Sbjct: 325 GRMRGQAFITLPDVETAQNALQMVHGYRGLGKPLVVEFGR 364
>gi|301106957|ref|XP_002902561.1| hypothetical protein PITG_10025 [Phytophthora infestans T30-4]
gi|262098435|gb|EEY56487.1| hypothetical protein PITG_10025 [Phytophthora infestans T30-4]
Length = 109
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 15 FKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAF 74
K Y G P++ LY+KNLAK V D F VFG++ ++ L ++ EGRM+ QAF
Sbjct: 19 MKKYQPGQPSNSLYVKNLAKTVELVDLFAVFGAVLPP-ESGLEALNIRHFTEGRMKCQAF 77
Query: 75 VTFPSVELAHRALNLVNGYVFKGKPMII 102
VT+PSV+LA AL V+G + K KP+I+
Sbjct: 78 VTYPSVDLASSALLHVHGVILKDKPLIV 105
>gi|198460375|ref|XP_002138823.1| GA25008 [Drosophila pseudoobscura pseudoobscura]
gi|198136994|gb|EDY69381.1| GA25008 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E+ +LP++KNY G+P++ LYIKNL K++ + ++ L +K
Sbjct: 283 RLSIRELEALPVYKNYNEGDPSNKLYIKNLHKNIGEEQLRELYSQY-----TTPENLEIK 337
Query: 63 LMQEGRMRGQAFVTF---PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF P E+ AL+ NG +++ KPMI+ +G+
Sbjct: 338 VMQQGRMKGQAFVTFIHLPDPEVIATALDETNGLLWEQKPMIVCYGK 384
>gi|256074908|ref|XP_002573764.1| hypothetical protein [Schistosoma mansoni]
gi|353231113|emb|CCD77531.1| hypothetical protein Smp_023270.2 [Schistosoma mansoni]
Length = 525
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG------------ 50
+L E+ + P+F Y G S LY+KNL++ V D F +FG
Sbjct: 396 RLKDEDRRNYPVFAKYDTGTATSRLYVKNLSQTVTETDLFAIFGVFSNGPVTDSSCKPRV 455
Query: 51 SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
S+D+ + ++L+ EGRM+GQAF+ A +AL NGY+ +PM++QF R A
Sbjct: 456 SLDSTER-FSIRLLTEGRMKGQAFIGLACELTAKQALEATNGYMLYDRPMVVQFARG-AK 513
Query: 111 AKP 113
AKP
Sbjct: 514 AKP 516
>gi|320544222|ref|NP_726148.3| snipper, isoform I [Drosophila melanogaster]
gi|318068664|gb|AAM68198.3| snipper, isoform I [Drosophila melanogaster]
Length = 407
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L + +LP++KNY G+P++ LYIKNLAK V ++ A S L +K
Sbjct: 304 RLSTSALEALPVYKNYKTGDPSNKLYIKNLAKSVDEQQLRELYAKY-----TAASKLDIK 358
Query: 63 LMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQFGR 106
+M +GRM+GQAFVTF E+ +ALN NG ++ KPMI+ +G+
Sbjct: 359 VMHQGRMKGQAFVTFLDANNPEIIAQALNETNGLLWHDKPMIVCYGK 405
>gi|55925333|ref|NP_001007406.1| RNA-binding protein 41 [Danio rerio]
gi|55250637|gb|AAH85431.1| RNA binding motif protein 41 [Danio rerio]
Length = 439
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E I ++P FKNY G P+ VL +KN++ P SLF +S I+ +
Sbjct: 316 EAIRNIPRFKNYQRGKPSKVLCVKNIS----PRASLAQLVSLFSRFQKDESQPILYRLLT 371
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
GR++GQAF+T ++A AL+L+NGY KP++I+FGR
Sbjct: 372 GRLKGQAFITLADAKIAQAALDLLNGYKLLEKPLVIEFGR 411
>gi|194756026|ref|XP_001960280.1| GF13283 [Drosophila ananassae]
gi|190621578|gb|EDV37102.1| GF13283 [Drosophila ananassae]
Length = 389
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E+ LP++KNY G+P++ LYIKNL K V ++ + L +K
Sbjct: 286 RLSVSELQELPVYKNYKMGDPSNKLYIKNLDKSVDEQQLRQLYSKY-----TPAAQLDIK 340
Query: 63 LMQEGRMRGQAFVTFPS---VELAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF E RAL NG V+K KPMI+ FG+
Sbjct: 341 VMQQGRMKGQAFVTFLEGYRPEGIARALGETNGLVWKQKPMIVCFGK 387
>gi|256074910|ref|XP_002573765.1| hypothetical protein [Schistosoma mansoni]
gi|353231114|emb|CCD77532.1| hypothetical protein Smp_023270.1 [Schistosoma mansoni]
Length = 413
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG------------ 50
+L E+ + P+F Y G S LY+KNL++ V D F +FG
Sbjct: 284 RLKDEDRRNYPVFAKYDTGTATSRLYVKNLSQTVTETDLFAIFGVFSNGPVTDSSCKPRV 343
Query: 51 SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
S+D+ + ++L+ EGRM+GQAF+ A +AL NGY+ +PM++QF R A
Sbjct: 344 SLDSTER-FSIRLLTEGRMKGQAFIGLACELTAKQALEATNGYMLYDRPMVVQFARG-AK 401
Query: 111 AKP 113
AKP
Sbjct: 402 AKP 404
>gi|355745490|gb|EHH50115.1| hypothetical protein EGM_00887, partial [Macaca fascicularis]
Length = 515
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEQKCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAF P + A +AL NGYV GKPM++QF R +A+P
Sbjct: 457 IRLMKEGRMKGQAFTALPKEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 506
>gi|66826411|ref|XP_646560.1| hypothetical protein DDB_G0270734 [Dictyostelium discoideum AX4]
gi|60474780|gb|EAL72717.1| hypothetical protein DDB_G0270734 [Dictyostelium discoideum AX4]
Length = 578
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K G P + +YIKN++K DF +F F S+ K LI+ +EG++R QAF+
Sbjct: 486 KKIEIGEPTNKIYIKNISKHASYQDFQSLFRRHFNSVTEMKKQLIIDYHKEGKLRNQAFI 545
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
TFP+++LA ALN G+ KP++I F +N
Sbjct: 546 TFPTIQLATLALNQTQGFKLHQKPILILFSKN 577
>gi|348531972|ref|XP_003453481.1| PREDICTED: RNA-binding protein 41-like [Oreochromis niloticus]
Length = 443
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E I S+P F+NY G P+ VL +KNL+ P +LF + ++ +
Sbjct: 331 EGIRSIPRFRNYQPGKPSKVLCVKNLS----PQASVAQLVALFSRFERKDGPPVLYRVLT 386
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105
GRM+GQAF+T P E A AL LV+ Y GKP++++FG
Sbjct: 387 GRMKGQAFITLPDAETAQNALQLVHRYRLLGKPLVVEFG 425
>gi|443689346|gb|ELT91761.1| hypothetical protein CAPTEDRAFT_191651 [Capitella teleta]
Length = 484
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L ++I +P F +Y G P L++KNL V + S F S I+
Sbjct: 378 RLSLDQIRGIPKFSDYQRGEPTETLFVKNLHPSVDEAEL----SSPFLSFQEEGEERIIF 433
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ GRM+GQAFV FP+ A ALN +NG+ K +PMIIQF R
Sbjct: 434 RLLCGRMKGQAFVRFPNTTSASAALNAINGFRLKDRPMIIQFAR 477
>gi|348681873|gb|EGZ21689.1| hypothetical protein PHYSODRAFT_493685 [Phytophthora sojae]
Length = 144
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+LP ++ + K Y G P+ LY+KNLAK V D VF ++ ++ L ++
Sbjct: 16 RLPDAQLAGEKVMKKYQRGQPSDTLYVKNLAKAVELADLLAVFSAVLPP-ESGPEVLDIR 74
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
EGRM+ QAFV +P+VELA AL V+G V K KP+I+
Sbjct: 75 HFTEGRMKCQAFVKYPTVELASGALLQVHGVVLKEKPLIV 114
>gi|357620404|gb|EHJ72608.1| hypothetical protein KGM_12871 [Danaus plexippus]
Length = 367
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
K+ ++I + FK+Y G P+ VL++KN++ + + LF G +
Sbjct: 257 KMCLDDIKKIERFKDYEPGIPSKVLFLKNISPSITQEQLSL----LFNQFHLENGGPVQL 312
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ G MRGQAFVTF S +LA +AL VNG + G+P+I QFGRN
Sbjct: 313 RLMTGWMRGQAFVTFQSEDLAIQALEEVNGTIMGGQPIIAQFGRN 357
>gi|195122904|ref|XP_002005950.1| GI18815 [Drosophila mojavensis]
gi|193911018|gb|EDW09885.1| GI18815 [Drosophila mojavensis]
Length = 416
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 16/115 (13%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E++ LP++KNY G P++ LYIKNL K + +L+ A+S L +K
Sbjct: 296 RLSAEQLQELPVYKNYKVGEPSNKLYIKNLDKSITESQ----LSALYARYAPAES-LDIK 350
Query: 63 LMQEGRMRGQAFVTFPSVE-----------LAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAFVTF ++ + +AL+ NG +++ KPMI+ +G+
Sbjct: 351 VMQQGRMKGQAFVTFKQLDSDGASAEALAAVVAKALSETNGLLWQQKPMIVCYGK 405
>gi|47209961|emb|CAF92810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 375
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E I +P F++Y G P+ VL +KNL+ +LF ++ +
Sbjct: 280 EGIRKIPRFQSYRPGTPSKVLCVKNLSGHASVAQLV----ALFSRFQQENRPPVLYRLLT 335
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105
GRM+GQAF+T P VE A RAL LV+GY G+P++++FG
Sbjct: 336 GRMKGQAFITLPDVETAQRALQLVHGYRGLGRPLVLEFG 374
>gi|440800549|gb|ELR21585.1| ABC2 type transporter superfamily protein [Acanthamoeba castellanii
str. Neff]
Length = 541
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 15 FKNYTAGNPASVLYIKNL--AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
+ Y G P+ L++KNL K++ P + +FGS F + + + + +K+M GRM GQ
Sbjct: 441 YDKYQPGTPSHKLHLKNLHRKKEISPSELLRLFGS-FVAPGQSPNDIEIKVMT-GRMSGQ 498
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
AFVT S ELA +AL V+GYV G P+++++GR A KP
Sbjct: 499 AFVTLASQELATQALAAVHGYVLHGLPILVEYGRE-AKGKP 538
>gi|281209438|gb|EFA83606.1| hypothetical protein PPL_02672 [Polysphondylium pallidum PN500]
Length = 620
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 33 AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 92
AKD+ DDF+++FG F S K + + +EGRM+ QAF+T P++ELA ALN + G
Sbjct: 291 AKDLENDDFYYLFGRYFESDTTMKEQMNIVHYKEGRMKQQAFITLPTIELAVDALNELQG 350
Query: 93 YVFKGKPMII 102
+ K KP+II
Sbjct: 351 FKLKDKPLII 360
>gi|300175584|emb|CBK20895.2| unnamed protein product [Blastocystis hominis]
Length = 420
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EE+ SL K G P + LY++NL+ ++ ++ +FG S G V
Sbjct: 325 RLSEEELASL---KPTKEGCPNNTLYVRNLSPNISKEELVDLFGRFERS-----PGEFVY 376
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ GRM+GQAF+TFP +E A + ++G+V GKP+++Q+ R
Sbjct: 377 TLLTGRMKGQAFITFPDLETAEKVKRKLHGFVLNGKPLLLQYKR 420
>gi|195027067|ref|XP_001986405.1| GH20545 [Drosophila grimshawi]
gi|193902405|gb|EDW01272.1| GH20545 [Drosophila grimshawi]
Length = 403
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 18/117 (15%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L E++ +LP++KNY G P++ LYIKNL K V+ ++ A L +K
Sbjct: 286 RLTLEQLQALPIYKNYKRGEPSNKLYIKNLDKSVMESQLRLLYARY-----APADSLDIK 340
Query: 63 LMQEGRMRGQAFVTFPSVE-------------LAHRALNLVNGYVFKGKPMIIQFGR 106
+MQ+GRM+GQAF+TF + + +AL NG ++ KPMI+ +G+
Sbjct: 341 VMQQGRMKGQAFITFQKLSNTDTIADADAAAVVVAQALMATNGLLWHQKPMIVCYGK 397
>gi|442760863|gb|JAA72590.1| Hypothetical protein, partial [Ixodes ricinus]
Length = 91
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 9/90 (10%)
Query: 30 KNLAKDVVPDDFFFVFGSLFGSIDAAKSGL-----IVKLMQEGRMRGQAFVTFPSVELAH 84
+++AK V +D F ++G G +D KS L ++LM+EGRM+GQAF+TF S A
Sbjct: 4 EDVAKGVEVEDLFRIYG---GYVDV-KSELERYTFDIRLMKEGRMKGQAFLTFASESQAE 59
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
RA NG++ KG+P+++ F R+ A P+
Sbjct: 60 RARRDTNGFLLKGRPLVVHFTRSAKAKGPA 89
>gi|288541346|ref|NP_001165619.1| RNA-binding protein 41 isoform 3 [Mus musculus]
gi|74139275|dbj|BAE38514.1| unnamed protein product [Mus musculus]
Length = 404
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHR 85
M GRMRGQAF+TFP ++ R
Sbjct: 343 RMMTGRMRGQAFLTFPRERISRR 365
>gi|444524214|gb|ELV13781.1| RNA-binding protein 41 [Tupaia chinensis]
Length = 331
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 131 NRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPHVTERDLV----SLFARFQEKKGPPIQ 186
Query: 62 KLMQEGRMRGQAFVTFPS 79
M GRMRGQAF+TFP+
Sbjct: 187 FRMMTGRMRGQAFITFPN 204
>gi|344256974|gb|EGW13078.1| RNA-binding protein 41 [Cricetulus griseus]
Length = 385
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF Y G P VLY+KNL+ V D SLF K I
Sbjct: 311 RLSEEEIRNIPMFSAYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 366
Query: 63 LMQEGRMRGQAFVTFPS 79
+ GRMRGQAF+TFP+
Sbjct: 367 QIMSGRMRGQAFITFPT 383
>gi|325181334|emb|CCA15749.1| nucleoside diphosphate kinase B putative [Albugo laibachii Nc14]
Length = 846
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E+ S +NY G + LY+KN+A+ V D F +FG++ S A L V +G
Sbjct: 579 ELNSQKAMRNYENGRVSRSLYVKNIAEKVTLFDLFAIFGAVVPSEKLA--FLRVAHFTKG 636
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105
+M+GQAF+ F LA +AL ++G V KP+II G
Sbjct: 637 KMKGQAFIEFSEPSLAIQALERIHGVVISKKPLIIPDG 674
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 15 FKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQA 73
++Y+ G P++ + + NL + + +F + ID + L++++ E + +A
Sbjct: 441 LQSYSVGMPSATVMVSNLPPSIDMKNLTHLFSYVLPPEIDTKE--LMIEVDSE---QSEA 495
Query: 74 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +PS+ +A +A+ ++G V +GKP+I++F + K
Sbjct: 496 RIDYPSLGIAAKAVTQLHGVVLEGKPLIVRFTSDTQRTK 534
>gi|19113216|ref|NP_596424.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe
972h-]
gi|74676131|sp|O74968.1|RU1A_SCHPO RecName: Full=U1 small nuclear ribonucleoprotein usp102; Short=U1
snRNP protein usp102
gi|3169094|emb|CAA19287.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe]
Length = 249
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P K + P+ LYI+N+ + + + LFGS + V+ + RMRGQ
Sbjct: 14 PSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKV---IDVQARKTLRMRGQ 70
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
AFV F ++E A RAL + GY GKPM+IQ+ ++
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
>gi|156365749|ref|XP_001626806.1| predicted protein [Nematostella vectensis]
gi|156213695|gb|EDO34706.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L +EI +P FK+Y G P+ L++KNL+ V +D +F F A K L+ +
Sbjct: 269 RLSIDEIKQIPRFKDYAPGEPSKTLFLKNLSNKVKEEDLIRLFLR-FQQNGAPK--LVFR 325
Query: 63 LMQEGRMRGQAFVTFP 78
LM+ GRM+GQAFVTFP
Sbjct: 326 LMK-GRMKGQAFVTFP 340
>gi|268553735|ref|XP_002634854.1| C. briggsae CBR-RNP-3 protein [Caenorhabditis briggsae]
Length = 220
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPS 79
NP +Y+ NL + V D+ +F A+ G I++LM ++ RMRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKRDELKRSLHMIF-----AQYGEIIQLMSFRKERMRGQAHIVFKE 59
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>gi|449688545|ref|XP_002169375.2| PREDICTED: uncharacterized protein LOC100199875, partial [Hydra
magnipapillata]
Length = 634
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 9 ILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGR 68
ILS+ FKNY AG+P +LYIKNL+K++ + LFG + + +G
Sbjct: 565 ILSMEKFKNYKAGSPTRILYIKNLSKNIKECN----LAELFGRFCVNNPSEVKYQVMKGL 620
Query: 69 MRGQAFVTF 77
MRGQAFVTF
Sbjct: 621 MRGQAFVTF 629
>gi|167537765|ref|XP_001750550.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770971|gb|EDQ84646.1| predicted protein [Monosiga brevicollis MX1]
Length = 345
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPS 79
P LYI NL++ V D+ ++F G I+++ M + RGQAFV F S
Sbjct: 94 EPNQTLYINNLSERVKEDELKKALEAIFNQF-----GKILRVVAMSSFKRRGQAFVVFDS 148
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+E A +ALN + + F GKPM I F +
Sbjct: 149 IEAAEKALNAMQSFPFCGKPMRINFAKT 176
>gi|212529316|ref|XP_002144815.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074213|gb|EEA28300.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 253
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVT 76
++GNP + Y+ NL + V DD +F ++ G I++++ + + +GQAF+
Sbjct: 8 SSGNPPNPTYVHNLEERVKIDDLKEALTEIF-----SEYGTILEIVAKKNLKAKGQAFIV 62
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F +VE A RA+ VNG+ GKPM + F + + A
Sbjct: 63 FDNVESAQRAIEEVNGFDLLGKPMSLDFAKTRSDA 97
>gi|50551429|ref|XP_503188.1| YALI0D23375p [Yarrowia lipolytica]
gi|49649056|emb|CAG81388.1| YALI0D23375p [Yarrowia lipolytica CLIB122]
Length = 146
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 1 MGKLPPEEIL---SLPMFKNYTAGN---PASVLYIKNLAKDVVPDD---FFFVFGSLFGS 51
MGK E L P K+ T G+ P+ LY+KNL D + ++ S +G
Sbjct: 1 MGKTKRESALVESKRPAKKSKTDGDEPTPSPTLYVKNLTDKCTKSDLKRYLYMRFSSYGH 60
Query: 52 IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
I L + M+ RMRGQA V F ++ + ALN + F GK M+I++ R+ + A
Sbjct: 61 I------LDIVAMKNERMRGQAHVVFNDIDASISALNGLQKSEFMGKEMVIEYARSKSHA 114
>gi|426200920|gb|EKV50843.1| hypothetical protein AGABI2DRAFT_189187 [Agaricus bisporus var.
bisporus H97]
Length = 292
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPS 79
NP LYI+NL + V P LF S G ++ ++ G RMRGQAFV+F S
Sbjct: 64 NPCETLYIQNLNEKVKPQVLQATLRGLFKSY-----GDVLDVVAHGNMRMRGQAFVSFDS 118
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
V+ A +A+ V + KPM I F + + A
Sbjct: 119 VDSARKAMKDVQRFPLYSKPMQITFAKTRSDA 150
>gi|209878161|ref|XP_002140522.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556128|gb|EEA06173.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 103
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 14 MFKNYTAGNPAS----VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG-- 67
M K +GN + LY KNL V D + LF + G I+K++ +G
Sbjct: 1 MLKQLVSGNEDTFVNKTLYCKNLNDKVNKKDLRVILYELF-----IQYGTILKIIVKGGC 55
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
RGQAFV F ++ A ALN VNG V GKP++I++ + +
Sbjct: 56 NNRGQAFVLFDNLNSAIEALNNVNGRVILGKPIVIEYAKKDS 97
>gi|17541322|ref|NP_500505.1| Protein RNP-3 [Caenorhabditis elegans]
gi|351064353|emb|CCD72714.1| Protein RNP-3 [Caenorhabditis elegans]
Length = 217
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPS 79
NP +Y+ NL + V D+ +F G I++LM ++ +MRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQF-----GEIIQLMSFRKEKMRGQAHIVFKE 59
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>gi|302696767|ref|XP_003038062.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
gi|300111759|gb|EFJ03160.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
Length = 261
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 14 MFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRG 71
M + G P + LYIKNL V D+ +LF + G I+ ++ + RMRG
Sbjct: 1 MAATTSTGQPNTTLYIKNLNDKVQKDELRHQLYALFTTY-----GRIIDMVVSKAPRMRG 55
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
QA++ F + A AL G VF KPM I + ++
Sbjct: 56 QAWLVFADLASATTALRACQGMVFYDKPMHIDYAKS 91
>gi|308457660|ref|XP_003091200.1| CRE-RNP-3 protein [Caenorhabditis remanei]
gi|308257954|gb|EFP01907.1| CRE-RNP-3 protein [Caenorhabditis remanei]
Length = 223
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPS 79
NP +Y+ NL + + D+ +F G I++LM ++ +MRGQA V F
Sbjct: 5 NPNHTVYVNNLNEKIKRDELKRSLHMIFTQF-----GEIIQLMSFRKEKMRGQAHVVFKE 59
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F GKPM IQ+ R
Sbjct: 60 ISSASNALRALQGFPFYGKPMRIQYAR 86
>gi|212529314|ref|XP_002144814.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074212|gb|EEA28299.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 254
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 19 TAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFV 75
++GNP + +Y+ NL + V DD +F ++ G I++++ + + +GQAF+
Sbjct: 8 SSGNPPNPTVYVHNLEERVKIDDLKEALTEIF-----SEYGTILEIVAKKNLKAKGQAFI 62
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F +VE A RA+ VNG+ GKPM + F + + A
Sbjct: 63 VFDNVESAQRAIEEVNGFDLLGKPMSLDFAKTRSDA 98
>gi|336365379|gb|EGN93730.1| hypothetical protein SERLA73DRAFT_189480 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377939|gb|EGO19099.1| hypothetical protein SERLADRAFT_480314 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVE 81
+ LYI+NL + + D LF S G ++ ++ G RMRGQAFV+F S E
Sbjct: 36 SETLYIQNLNEKIKIDVLKASLRGLFKSY-----GEVLDVVAHGNLRMRGQAFVSFDSAE 90
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+A +A+ V G+ KPM I F R + A
Sbjct: 91 VAKKAMKEVRGFPLYSKPMQISFARTRSDA 120
>gi|409084026|gb|EKM84383.1| hypothetical protein AGABI1DRAFT_110905 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 292
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P LYI+NL + V P LF S G ++ ++ G RMRGQAFV+F SV
Sbjct: 65 PCETLYIQNLNEKVKPQVLQATLRGLFKSY-----GDVLDVVAHGNMRMRGQAFVSFDSV 119
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A +A+ V + KPM I F + + A
Sbjct: 120 DSARKAMKDVQRFPLYSKPMQITFAKTRSDA 150
>gi|392597982|gb|EIW87304.1| RNA binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 263
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPS 79
N + LYI+NL + + D SLF + G ++ ++ RMRGQAFV+F S
Sbjct: 35 NVSETLYIQNLNEKIKVDVIKQSLRSLFKTY-----GEVLDVVAHSNLRMRGQAFVSFES 89
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E+A +A+ V G+ KPM I F R+ + A
Sbjct: 90 PEVAKKAMEEVRGFPLYNKPMQISFARSRSDA 121
>gi|296005347|ref|XP_002809001.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
gi|225631938|emb|CAX64282.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
Length = 449
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LYIKNL V D+ LF + K +++K +GQA+V + E
Sbjct: 173 PNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWR---KGQAWVVYDDKEC 229
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A +ALN + GYV GK M I F N +
Sbjct: 230 ATKALNALQGYVLFGKIMQINFSHNKS 256
>gi|270005656|gb|EFA02104.1| hypothetical protein TcasGA2_TC007748 [Tribolium castaneum]
Length = 337
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 1 MGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI 60
+ KL EEI +LP F+NY G P++VL++KNLA + D +F AK L
Sbjct: 265 VTKLSLEEIRNLPKFQNYDKGTPSNVLFLKNLANGLDQSDLETIFQKF------AKEILS 318
Query: 61 VKLMQEGRMRGQAFV 75
+++M G M+GQAF+
Sbjct: 319 IRVMT-GLMQGQAFI 332
>gi|428182625|gb|EKX51485.1| hypothetical protein GUITHDRAFT_159319 [Guillardia theta CCMP2712]
Length = 237
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 23 PASVLYIKNL----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P LYI NL +K V+ + + V S FG + L V ++ G+MRGQAFV F
Sbjct: 21 PNQTLYINNLNDKISKQVLRSELY-VLCSQFGGV------LDVVALKTGKMRGQAFVVFQ 73
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ A AL + G+ F GKPM F R +
Sbjct: 74 QLTAASVALQKLQGFEFYGKPMRTAFCRTKS 104
>gi|299742555|ref|XP_001832567.2| hypothetical protein CC1G_03581 [Coprinopsis cinerea okayama7#130]
gi|298405237|gb|EAU89316.2| hypothetical protein CC1G_03581 [Coprinopsis cinerea okayama7#130]
Length = 266
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK-----LMQEGRMRGQAFVTFP 78
A+ L + NL +V P D +FG + G +V+ + GR GQA VTF
Sbjct: 60 ATKLKVSNLHYEVTPKDLNAIFGQI---------GTLVREPVLWYDESGRSTGQAIVTFE 110
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
+ A RA+N NG + KG+PM I +
Sbjct: 111 TAAEATRAMNQFNGILAKGQPMSITY 136
>gi|189236031|ref|XP_968049.2| PREDICTED: similar to rac serine/threonine kinase [Tribolium
castaneum]
Length = 1859
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
KL EEI +LP F+NY G P++VL++KNLA + D +F AK L ++
Sbjct: 1285 KLSLEEIRNLPKFQNYDKGTPSNVLFLKNLANGLDQSDLETIFQKF------AKEILSIR 1338
Query: 63 LMQEGRMRGQAFV 75
+M G M+GQAF+
Sbjct: 1339 VMT-GLMQGQAFI 1350
>gi|146183888|ref|XP_001027266.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|146143436|gb|EAS07024.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 247
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + DD F S +GSI L +K + RMRGQAFV F
Sbjct: 30 PNNTIYINNLNERISIDDLKQELFKLFSEYGSI------LEIKAKKNIRMRGQAFVVFEQ 83
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A +A+ +N F GK + + F + + A
Sbjct: 84 IACAQKAIEALNRKNFYGKALHLNFAKTKSDA 115
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL+KD+ D F +F S FG I +A ++ G+ RG FV F S E A +A
Sbjct: 201 LYVKNLSKDMTQDAFHNMF-SAFGEIISA----VIMQDHNGKSRGFGFVDFESPEDAKKA 255
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
++ +NGY + + + + GR A A+
Sbjct: 256 VDALNGYQLESRTLFV--GRAQAKAE 279
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 14 MFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQA 73
+F + AS LY+KNLA + D +F S G I +AK V G RG
Sbjct: 291 IFNTHMEKFKASNLYVKNLALCIDNDKLQELF-SCSGKIVSAK----VMRYDNGASRGFG 345
Query: 74 FVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F S E A +ALN +NG VF+GK + +
Sbjct: 346 FVCFSSPEEAKKALNALNGAVFQGKSLYV 374
>gi|432901695|ref|XP_004076901.1| PREDICTED: RNA-binding protein 41-like [Oryzias latipes]
Length = 434
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E I S+P F+NY G P+ VL +KN++ +F S F DAA I+ +
Sbjct: 320 EAIRSIPRFRNYQPGKPSKVLCVKNVSTHASLAQLVALF-SRFEKKDAAP---ILYRLLT 375
Query: 67 GRMRGQAFVTFP--SVELAHRALNLVNGYVF-KGKPMIIQFGRNPAAAKP 113
GRM+GQAFVT P S A NL F +P +P +KP
Sbjct: 376 GRMKGQAFVTLPESSTSSASARCNLTIPLAFLSRRPPAADLHSSPLRSKP 425
>gi|449549875|gb|EMD40840.1| hypothetical protein CERSUDRAFT_103222 [Ceriporiopsis subvermispora
B]
Length = 258
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVT 76
++ P LYIKNL V ++ +LF + G I+ + M+ +MRGQAF+
Sbjct: 2 SSTQPNETLYIKNLNDKVNKEELRTQLYALFTTY-----GKIINIVAMKTEKMRGQAFLV 56
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F + A AL G VF KPM I++ R + A
Sbjct: 57 FSDLASATAALRACEGIVFYDKPMHIEYARTRSYA 91
>gi|255953987|ref|XP_002567746.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589457|emb|CAP95601.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 249
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P + +Y+KNL + + D +F ++ G I++++ + + +GQAF+ F ++
Sbjct: 11 PNATVYVKNLDERIKVDQLKHALEEIF-----SEYGTILEIVAKTNLKAKGQAFIVFDNI 65
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A RA+ +NG+ KPM++ + + P+ A
Sbjct: 66 ESATRAIEDINGFDLFEKPMVLDYAKTPSDA 96
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E+L Y N LY+KNL D + D+ + S FG+I +AK +M+EG
Sbjct: 282 EMLKQERMSKYQGVN----LYVKNL-DDNINDERLWKEFSPFGTITSAKV-----MMEEG 331
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
R RG FV F S E A +A+ +NG + KP+ + + K
Sbjct: 332 RSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERK 376
>gi|430811247|emb|CCJ31263.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 367
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 6 PEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ 65
P E+ LP P+ +YI+NL++ V D ++F S G I+ ++
Sbjct: 19 PTELSVLP---------PSETIYIRNLSEKVKIDILKKSLEAVFSSY-----GTILDIIA 64
Query: 66 EG--RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
RMRGQAFV F S++ A +A+ V + KPM++Q+ + + A
Sbjct: 65 HKNIRMRGQAFVVFDSIDSAQKAIADVQAFTLFDKPMVLQYSKTKSDA 112
>gi|345570654|gb|EGX53475.1| hypothetical protein AOL_s00006g341 [Arthrobotrys oligospora ATCC
24927]
Length = 255
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPS 79
P+S +Y +NL + V +LF ++ G I++++ + R RGQAFV F S
Sbjct: 3 EPSSTVYCRNLEESVKIPVLTATLETLF-----SQYGTILEIIAKKNLRARGQAFVVFDS 57
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A RA+ V G+ KPM++Q+ + + A
Sbjct: 58 PEAAERAIKEVQGFNLFEKPMVLQYAKTKSDA 89
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV FPS E A +A
Sbjct: 197 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFPSREEATKA 250
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 251 VTEMNGRIVGSKPLYVALAQRKEERK 276
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN ++V + +F S FG L VK+M++ G+ RG FV++ E A+
Sbjct: 94 VYIKNFGEEVDDGNLKELF-SQFGKT------LSVKVMRDSSGKSRGFGFVSYEKHEDAN 146
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 147 KAVDEMNGKEMSGKAIFV 164
>gi|378726702|gb|EHY53161.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 256
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P+S +Y+KNL + + D +F ++ G I+ L+ + + +GQAFV F S
Sbjct: 13 PSSTVYVKNLEERIKIDQLKEALTEIF-----SEYGNIIDLVAKKNLKAKGQAFVVFDSA 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A +A+ VNG+ KPM + F R + A
Sbjct: 68 ESAAKAIEEVNGFELFDKPMQLDFARTRSDA 98
>gi|358371386|dbj|GAA87994.1| RNP domain protein, partial [Aspergillus kawachii IFO 4308]
Length = 335
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G+ ++V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 225 SGGDKSAVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 279
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
S E A A+ GY + G+P+ I F
Sbjct: 280 STETAETAIAKFTGYQYGGRPLGITF 305
>gi|242207485|ref|XP_002469596.1| predicted protein [Postia placenta Mad-698-R]
gi|220731400|gb|EED85245.1| predicted protein [Postia placenta Mad-698-R]
Length = 231
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 24 ASVLYIKNLAKDV-VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+ LYI+NL + + +P + SL G A L V RMRGQAFV+F S ++
Sbjct: 5 SETLYIQNLNEKIKIP----VLKASLRGLFKAYGEVLDVVAHSNLRMRGQAFVSFESADV 60
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A +AL V G+ KPM I F R + A
Sbjct: 61 AKKALKEVKGFPLYSKPMQISFARTRSDA 89
>gi|426195373|gb|EKV45303.1| hypothetical protein AGABI2DRAFT_194268 [Agaricus bisporus var.
bisporus H97]
Length = 243
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 6 PEEILSLPMFKNYTAGN------PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGL 59
P + +P TAG P + + NL ++ P D +FG + I
Sbjct: 30 PGSNIDIPRTSRPTAGGTTPSAAPTDKILVSNLHYEITPKDLNVIFGQIGTLIREP---- 85
Query: 60 IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
+++ + GR GQA V+F +V A RA NG + KG+PM + F
Sbjct: 86 LIRYDRSGRSSGQAIVSFETVAEAVRAKKQFNGILAKGQPMTVDF 130
>gi|409077031|gb|EKM77399.1| hypothetical protein AGABI1DRAFT_115306 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 243
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 6 PEEILSLPMFKNYTAGN------PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGL 59
P + +P TAG P + + NL ++ P D +FG + I
Sbjct: 30 PGSNIDIPRTSRPTAGGTTPSAAPTDKILVSNLHYEITPKDLNVIFGQIGTLIREP---- 85
Query: 60 IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
+++ + GR GQA V+F +V A RA NG + KG+PM + F
Sbjct: 86 LIRYDRSGRSSGQAIVSFETVAEAVRAKKQFNGILAKGQPMTVDF 130
>gi|331231467|ref|XP_003328397.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307387|gb|EFP83978.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 315
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
RMRGQAFV FP E+A +A+ V G+ GKP+ I F R+PA
Sbjct: 119 RMRGQAFVAFPDREMAAKAVKEVKGFPLYGKPIEIAFARSPA 160
>gi|452823467|gb|EME30477.1| U2 small nuclear ribonucleoprotein B'' [Galdieria sulphuraria]
Length = 250
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI+NL + V + + S FG I + V ++ RMRGQAF+ F
Sbjct: 38 PNQTIYIRNLDEKVKKQELRQSLYEAFSQFGRI------VDVVALKTTRMRGQAFIAFED 91
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G++F KPM+IQ+ +
Sbjct: 92 IASATNALRGLQGFLFYNKPMVIQYAK 118
>gi|123430856|ref|XP_001307983.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889640|gb|EAX95053.1| hypothetical protein TVAG_428560 [Trichomonas vaginalis G3]
Length = 186
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL-MQEGRMRGQAFVTFPSVE 81
P+ L+++NL + DD LF S+ +V++ ++G+ RGQA+V+FP++E
Sbjct: 7 PSQTLFVRNLTDKIPIDDLKRNLYYLFSSV-----APVVEINARKGQSRGQAWVSFPNLE 61
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A + N + F GK + I++ +NP+ +
Sbjct: 62 SAEIIMKQFNNFPFLGKALQIEYSKNPSKS 91
>gi|224146679|ref|XP_002326095.1| predicted protein [Populus trichocarpa]
gi|222862970|gb|EEF00477.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + V ++ + S +G I L V ++ R+RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRI------LDVVALKTARLRGQAWVVFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A A+ + G+ F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQGFPFYDKPMRIQYAKT 89
>gi|348683636|gb|EGZ23451.1| hypothetical protein PHYSODRAFT_484798 [Phytophthora sojae]
Length = 236
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LY+ NL + D + +L+ S+ L + + + R+RGQA+VTF +
Sbjct: 21 PNHTLYLNNLNDKIKADR---MKATLYASLSQHGKILEIVMGRARRLRGQAWVTFDDIPS 77
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A AL VNG V KP++I F + A
Sbjct: 78 ASNALRAVNGSVLFDKPVVIHFAKEKA 104
>gi|358385647|gb|EHK23243.1| hypothetical protein TRIVIDRAFT_127044, partial [Trichoderma virens
Gv29-8]
Length = 453
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 6 PEEILSLPMFKNYTAGNP-ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM 64
P +L P N TAG ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 333 PPTVLPNPFTDNATAGTERGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQYE 387
Query: 65 QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 388 PSGRSRGTGVVRFDSAETAETAIAKFQGYQYGGRPLNLSF 427
>gi|389742376|gb|EIM83563.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 274
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+ LYI+NL + + + SL G + L V RMRGQAFV+F S E+A
Sbjct: 48 SETLYIQNLNEKI---RIEVLKNSLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFESPEIA 104
Query: 84 HRALNLVNGYVFKGKPMIIQFGRN 107
+AL V G+ KPM I F R
Sbjct: 105 AKALKEVKGFPLYSKPMQISFART 128
>gi|403411353|emb|CCL98053.1| predicted protein [Fibroporia radiculosa]
Length = 271
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 24 ASVLYIKNLAKDV-VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+ LYI+NL + + +P + SL G + L V RMRGQAFV+F S E
Sbjct: 45 SETLYIQNLNEKIRIP----VLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFDSAEA 100
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A +AL V G+ KPM I F R + A
Sbjct: 101 AKKALKEVRGFPLYSKPMQISFARTRSDA 129
>gi|449541608|gb|EMD32591.1| hypothetical protein CERSUDRAFT_118631 [Ceriporiopsis subvermispora
B]
Length = 272
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 24 ASVLYIKNLAKDV-VP------DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
+ LYI+NL + + +P F +G + + A S L RMRGQAFV+
Sbjct: 46 SETLYIQNLNEKIKIPVLKQSLRSLFKTYGEVLDVV--AHSNL--------RMRGQAFVS 95
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F S E A +AL V G+ KPM I F R+ + A
Sbjct: 96 FDSAESAQKALKEVRGFPLYSKPMQISFARSRSDA 130
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+A DV DDF +F FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAPDVTEDDFRELF-EKFGDVTSSS----LARDQEGKSRGFGFVNFTTHESASKA 296
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F G+ + +
Sbjct: 297 VDDLNGKDFHGQDLYV 312
>gi|409048571|gb|EKM58049.1| hypothetical protein PHACADRAFT_206888 [Phanerochaete carnosa
HHB-10118-sp]
Length = 234
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 11 SLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR 70
S P +P + L + NL +V P D VFG + G++ + LI + + GR
Sbjct: 41 SAPTASTAADASPNTKLLVSNLHYEVTPKDLTQVFG-IIGTL--VREPLI-RYDRSGRST 96
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 108
G A +++ + A +AL NG + KG+PM I+F P
Sbjct: 97 GIAIISYETAAEAKQALAQYNGKLCKGQPMSIEFDSGP 134
>gi|330842469|ref|XP_003293200.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
gi|325076492|gb|EGC30273.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
Length = 233
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y+ NL + + SLF +K G I+++ +MRGQAF+ F +
Sbjct: 12 PNQTIYVNNLYEKISKKKLREHLYSLF-----SKYGQILEIEASKSLKMRGQAFIVFKDI 66
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL +NG+ F +PM IQ+ +N + A
Sbjct: 67 TSASNALREMNGFNFLDRPMKIQYSKNKSDA 97
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
NP + L +KNL K+V + F F FG I + K ++ +G RG AF+ F S E
Sbjct: 168 NPKANLLVKNLDKEVTQQELFDSFKQ-FGDIQSLK----LETYPDGSSRGYAFIQFQSEE 222
Query: 82 LAHRALNLVNGYVFKGKPMII 102
A +ALN +N KGK + I
Sbjct: 223 EAEKALNAMNQAEIKGKKIEI 243
>gi|189053747|dbj|BAG35999.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ R
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYART 89
>gi|405974726|gb|EKC39350.1| U1 small nuclear ribonucleoprotein A [Crassostrea gigas]
Length = 541
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P +YI NL + V D+ + S FG I L + M+ +MRGQAFV F
Sbjct: 312 ARPNQTIYINNLNEKVKKDELKKSLYAIFSQFGQI------LDIVAMKTLKMRGQAFVIF 365
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ A+ AL + G+ F KPM IQ+ + +
Sbjct: 366 KDINSANSALRSMQGFPFYEKPMRIQYSKKDS 397
>gi|425772063|gb|EKV10488.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
Pd1]
gi|425777240|gb|EKV15421.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
PHI26]
Length = 249
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P + +Y+KNL + + D +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 11 PNATVYVKNLDERIKIDQLKHALEEIF-----SEYGTILEVVAKTNLKAKGQAFIVFDNV 65
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA+ +NG+ KPM++ + + P+ A
Sbjct: 66 DSATRAIEDINGFDLFEKPMVLDYAKTPSDA 96
>gi|213410425|ref|XP_002175982.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
gi|212004029|gb|EEB09689.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
Length = 249
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVE 81
+ LYI+NL + + + + LFG K G I+ + RMRGQAFV F
Sbjct: 23 SETLYIRNLEERIKLEMLKRILEHLFG-----KYGKILHVYARKTLRMRGQAFVVFEDGR 77
Query: 82 LAHRALNLVNGYVFKGKPMIIQF 104
A +AL + G+ GKPM+IQF
Sbjct: 78 CAAQALQDLQGFPLYGKPMLIQF 100
>gi|384486776|gb|EIE78956.1| hypothetical protein RO3G_03661 [Rhizopus delemar RA 99-880]
Length = 140
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL +D+ F +F S FG I +A+ ++K Q G +G FV+F +E A+ A
Sbjct: 10 LYIKNLDRDITSKILFELFRS-FGEIISAR---VMKDTQTGLSKGYGFVSFRQMEDAYEA 65
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKP 113
L +NG + K + + F A+
Sbjct: 66 LMEMNGSRLRTKHISVSFHEQKKTAQE 92
>gi|302673457|ref|XP_003026415.1| hypothetical protein SCHCODRAFT_35516 [Schizophyllum commune H4-8]
gi|300100097|gb|EFI91512.1| hypothetical protein SCHCODRAFT_35516, partial [Schizophyllum
commune H4-8]
Length = 230
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
LYI+NL + + D +LF + L V + RMRGQAFV+F V A
Sbjct: 9 CETLYIQNLNEKIKVDIMKQTLRTLFKTYGEV---LDVVAHRNLRMRGQAFVSFADVNSA 65
Query: 84 HRALNLVNGYVFKGKPMIIQFGRNPAAA 111
RA V G+ KPM I F R + A
Sbjct: 66 RRAAREVRGFPLYTKPMQISFARTRSDA 93
>gi|451849890|gb|EMD63193.1| hypothetical protein COCSADRAFT_38066 [Cochliobolus sativus ND90Pr]
Length = 326
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +VLYI NL +V PD VF S FG I++ K + G RG A+V + +V
Sbjct: 134 PHNVLYIGNLYYEVTPDQLKRVF-SRFGDIESIK----IVYDNRGLSRGFAYVEYKNVSD 188
Query: 83 AHRALNLVNGYVFKGKPMIIQF---------GRNPAAAKPS 114
A A++ ++ VF+G+ +++QF GR P +P+
Sbjct: 189 AQAAIDNLDMQVFEGRNLVVQFHAPKYQPAKGRGPNGNEPN 229
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+A +V D+F +F + FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 247 IYVKNIANEVTDDEFRDLF-TAFGDVTSSS----LARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 302 VDDLNGKDFRGQDLYV 317
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E+L Y N LYIKNL D + D+ S FGSI +AK +++EG
Sbjct: 281 EMLKQERISRYQGVN----LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEG 330
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
R +G FV F S E A +A+ +NG + KP+ + + K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 17 NYTAGN-PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
N AGN P + LY+ +L D+ + F S G + + + + + M R G A+V
Sbjct: 2 NTAAGNYPMASLYVGDLHPDITEAMLYEKF-SPAGPVLSIR---VCRDMITRRSLGYAYV 57
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 58 NFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 95
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
A+ LY+KNL D + D+ S FGSI + K V L Q+G +G FV F + E A
Sbjct: 314 AANLYLKNL-DDKIDDEKLKELFSEFGSITSCK----VMLDQQGLSKGSGFVAFSTPEEA 368
Query: 84 HRALNLVNGYVFKGKPMII 102
RALN +NG + KP+ +
Sbjct: 369 SRALNGMNGKMIGKKPLYV 387
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL++ +D F S +G+I +A IV Q G+ +G FV F S + A A
Sbjct: 214 VYVKNLSETTSDEDLKKFF-SNYGAITSA----IVMKDQSGKSKGFGFVNFQSPDSAAAA 268
Query: 87 LNLVNGYVFKGK 98
+ +NG F K
Sbjct: 269 VEKLNGTTFNDK 280
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL + F S FGS+ + K V + G+ +G FV F + E A A
Sbjct: 123 VFIKNLDTSIDNKALQETFAS-FGSVLSCK----VAVDNNGQSKGYGFVQFENEEAAQSA 177
Query: 87 LNLVNGYVFKGKPMII 102
+N +NG + K + +
Sbjct: 178 INRLNGMLINDKEVFV 193
>gi|398396806|ref|XP_003851861.1| hypothetical protein MYCGRDRAFT_104845 [Zymoseptoria tritici
IPO323]
gi|339471741|gb|EGP86837.1| hypothetical protein MYCGRDRAFT_104845 [Zymoseptoria tritici
IPO323]
Length = 498
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G P +++++KNL DD +F ++ G++D A+ ++ GR RG V F
Sbjct: 395 SGGQPNAIIHVKNLPWSTSNDDLVELFQTI-GTVDRAE----IQYEANGRSRGAGVVQFG 449
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
S A A+ GY + G+P+ + + R P A
Sbjct: 450 SQGDAATAIEKFQGYSYGGRPLGLDYARYPDAG 482
>gi|281202145|gb|EFA76350.1| U2 small nuclear ribonucleoprotein B [Polysphondylium pallidum
PN500]
Length = 246
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 26 VLYIKNL----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
+Y+ NL +K + + + +F S +GSI L + + +MRGQAF+ F +
Sbjct: 30 TIYVNNLNEKPSKKKLTEQLYSLF-SPYGSI------LEIVAAKRQKMRGQAFIVFKDIT 82
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL +NG+ F G+PM IQ+ ++ + A
Sbjct: 83 SASNALREMNGFEFLGRPMSIQYAKSKSDA 112
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK V + G+ RG FV + S E A RA
Sbjct: 324 LYVKNLHDDIDDETLRTEF-SQFGTITSAK----VMVDSAGKSRGFGFVCYASPEEATRA 378
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KGKP+ + +
Sbjct: 379 VTEMNGRMIKGKPIYVALAQ 398
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P F+ GN ++IKNL + V F S FG+I + K +K G +G
Sbjct: 121 PAFRKSGVGN----IFIKNLDRSVDNKALHDTF-SAFGNILSCKVAQDLK----GESKGY 171
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F E A A+ VNG + +GK + +
Sbjct: 172 GFVHFEKDESARLAIEKVNGMLLEGKKVYV 201
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSL--FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV-- 80
S LY+ +L +DV F VF + SI + + + + G A+V + SV
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSL------GYAYVNYNSVLD 91
Query: 81 -ELAHRALNLVNGYVFKGKPMIIQFG-RNPA 109
A RAL+ +N G+PM I + R+PA
Sbjct: 92 PAAAERALDQLNYTPLVGRPMRIMWSHRDPA 122
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
A+ LY+KNL D + D+ S FGSI + K V L Q+G +G FV F + E A
Sbjct: 304 AANLYLKNL-DDKIDDEKLKELFSEFGSITSCK----VMLDQQGLSKGSGFVAFSTPEEA 358
Query: 84 HRALNLVNGYVFKGKPMII 102
RALN +NG + KP+ +
Sbjct: 359 SRALNGMNGKMIGKKPLYV 377
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL++ +D F S +GSI +A IV Q G+ +G FV F S + A A
Sbjct: 204 VYVKNLSETTSDEDLKKFF-SNYGSITSA----IVMKDQSGKSKGFGFVNFQSPDSAAAA 258
Query: 87 LNLVNGYVFKGK 98
+ +NG F K
Sbjct: 259 VEKLNGTTFNDK 270
>gi|442760027|gb|JAA72172.1| Putative spliceosomal protein snrnp-u1a/u2b [Ixodes ricinus]
Length = 239
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + V D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVVFKD 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A AL + G+ F KPM IQ+ + + A
Sbjct: 59 LNSATNALRSMQGFPFYDKPMRIQYSKTDSDA 90
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D V DD ++ G+I +A+ ++K ++GR RG FV + + E + RA
Sbjct: 329 LYVKNL-DDSVTDDMLRDEFAVMGTITSAR---VMKDAKDGRSRGFGFVCYSTPEESTRA 384
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+N +NG + KP+ + +
Sbjct: 385 VNEMNGKLIANKPIFVALAQ 404
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E+L Y N LYIKNL D + D+ S FGSI +AK +++EG
Sbjct: 281 EMLKQERISRYQGVN----LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEG 330
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
R +G FV F S E A +A+ +NG + KP+ + + K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 17 NYTAGN-PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
N AGN P + LY+ +L D+ + F S G + + + + + M R G A+V
Sbjct: 2 NTAAGNYPMASLYVGDLHPDITEAMLYEKF-SPAGPVLSIR---VCRDMITRRSLGYAYV 57
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 58 NFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 95
>gi|310793820|gb|EFQ29281.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 203
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 23 PASVLYIKNL-----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P LY+ NL K + + + +F S +G + L + M+ +MRGQA +TF
Sbjct: 25 PNQTLYVTNLPSNKIQKQDLRTELYLLF-STYGPV------LDIVAMKTMKMRGQAHITF 77
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V+ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 78 RDVQTATQAMRSLEGFEFLGRPLTIQYAKS 107
>gi|409052167|gb|EKM61643.1| hypothetical protein PHACADRAFT_248371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 267
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 25 SVLYIKNLAKDV-VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
LYI+NL + + VP + SL G + L V RMRGQAFV+F + E+A
Sbjct: 42 ETLYIQNLNEKIKVP----VLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFENAEVA 97
Query: 84 HRALNLVNGYVFKGKPMIIQFGRN 107
+AL V G+ KPM I + R
Sbjct: 98 KKALKEVRGFPLYSKPMQISYART 121
>gi|320588360|gb|EFX00829.1| rnp domain containing protein [Grosmannia clavigera kw1407]
Length = 363
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 8 EILSLPMFKNYTAGN-PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E+ P + T+GN P+ +++++NL +D +FG++ G ++ A+ ++
Sbjct: 244 EVPPNPFTDHATSGNEPSEIIFVRNLPWSTSNEDLVELFGTI-GKVEQAE----IQYEPS 298
Query: 67 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F + E A A++ GY + G+P+ + F
Sbjct: 299 GRSRGSGVVRFDNPETADTAISKFQGYQYGGRPLGLSF 336
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVEL 82
S +Y+KN+ DV ++ F S G+I +AK LM++ GR +G FV F S E
Sbjct: 295 SNVYVKNIDDDVTDEELREHF-SQCGTITSAK------LMKDDKGRSKGFGFVCFSSSEE 347
Query: 83 AHRALNLVNGYVFKGKPMII 102
A +A+N +GY+F KP+ +
Sbjct: 348 ASKAVNTFHGYMFHRKPLYV 367
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E+L Y N LYIKNL D + D+ S FGSI +AK +++EG
Sbjct: 281 EMLKQERISRYQGVN----LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEG 330
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
R +G FV F S E A +A+ +NG + KP+ + + K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 17 NYTAGN-PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
N AGN P + LY+ +L D+ + F S G + + + + + M R G A+V
Sbjct: 2 NTAAGNYPMASLYVGDLHPDITEAMLYEKF-SPAGPVLSIR---VCRDMITRRSLGYAYV 57
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 58 NFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 95
>gi|299742799|ref|XP_001832784.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298405354|gb|EAU89029.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 257
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVE 81
LYI+NL + + P+ LF + G ++ ++ RMRGQAFV+F S +
Sbjct: 31 CETLYIQNLNEKIKPEVLKTTLRGLFKTY-----GPVLDVVAHSNLRMRGQAFVSFESAD 85
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+A +A+ V + KPM I F + + A
Sbjct: 86 IAEKAMREVQRFPLYSKPMQISFAKTRSDA 115
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
T+ P + LY+ +L DV + F S G + + + + + M R G A+V F
Sbjct: 5 TSSYPMASLYVGDLHPDVTEAMLYEKF-SPAGPVLSIR---VCRDMITRRSLGYAYVNFQ 60
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK 95
>gi|242763791|ref|XP_002340645.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723841|gb|EED23258.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 254
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P + Y+ NL + V D+ ++F ++ G I++++ + + +GQAF+ F +V
Sbjct: 12 PPNPTYVHNLEERVKIDELKEALTAIF-----SEYGTILEIVAKKNLKAKGQAFIVFDNV 66
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A RA+ VNG+ GKPM + F + + A
Sbjct: 67 ESAQRAIEEVNGFDLLGKPMHLDFAKTRSDA 97
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 297 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 350
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 351 VTEMNGRIVGSKPLYVALAQRKEERK 376
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 19 TAGN-PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
TAG+ P + LY+ +L D+ + F S G + + + + + M R G A+V F
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKF-SPAGPVLSIR---VCRDMITRRSLGYAYVNF 60
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 61 QQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 96
>gi|225719682|gb|ACO15687.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + V DD + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ A AL + G+ F KPM I F ++ +
Sbjct: 59 ITSATNALRSMQGFPFYDKPMRITFSKSDS 88
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 283 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 336
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 337 VTEMNGRIVGSKPLYVALAQRKEERK 362
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 302 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 355
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 356 VTEMNGRIVGSKPLYVALAQRKEERK 381
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+A DV +DF +F FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAPDVTDEDFRQLF-EKFGDVTSSS----LARDQEGKTRGFGFVNFTTHEAAFKA 296
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG F+G+ + +
Sbjct: 297 VEELNGKDFRGQDLYV 312
>gi|317150456|ref|XP_001824039.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus oryzae
RIB40]
Length = 251
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y++NL + V D +F ++ G ++ ++ + + +GQAF+ F SV
Sbjct: 13 PNSTVYVRNLEERVKVDQLKEALEEIF-----SEYGNVIDIVAKTNLKAKGQAFIVFDSV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A A++ +NG+ KPM++ F + + A
Sbjct: 68 ESASNAIDEINGFELFDKPMVLDFAKTRSDA 98
>gi|157831077|pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 60
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|22299055|ref|NP_682302.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295237|dbj|BAC09064.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 193
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ NL +D+ ++ +F G + K ++ + G+ RG FVT S E+A +
Sbjct: 39 LYVGNLPRDLSREELEALFNQEVGEVGTTK---LITDRKTGKCRGFGFVTVESEEVADQV 95
Query: 87 LNLVNGYVFKGKPMIIQ 103
+ +NGY FK P+ I+
Sbjct: 96 IEKLNGYTFKDNPLKIE 112
>gi|332855731|ref|XP_003316404.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Pan
troglodytes]
Length = 227
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|354545262|emb|CCE41989.1| hypothetical protein CPAR2_805380 [Candida parapsilosis]
Length = 454
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +Y++NL DD F +F ++ G + A+ ++ ++GR G A V F SV+
Sbjct: 371 PNDTIYVENLPFSTQNDDLFDLFETI-GKVSNAE----IQYQEDGRASGNAVVQFESVDS 425
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +LN +NGY + G+ + I + +
Sbjct: 426 ATTSLNELNGYEYGGRKLKISYKK 449
>gi|353234729|emb|CCA66751.1| related to small nuclear ribonucleoprotein snRNP U1A
[Piriformospora indica DSM 11827]
Length = 274
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
N + LYI+NL V +LF L V + RMRGQAFV+F V+
Sbjct: 44 NASETLYIQNLNDQVKLSYMKTTLTNLFRHYGKV---LDVVAHRNVRMRGQAFVSFAHVD 100
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
LA +AL V + GKPM + + + + A
Sbjct: 101 LARKALKEVQKFPLYGKPMQVSYAKTRSEA 130
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D V DD S G+I +A+ ++K ++ G RG FV + + E A RA
Sbjct: 297 LYVKNL-DDTVTDDVLRDEFSAMGTITSAR---VMKDLKTGISRGFGFVCYSTPEDATRA 352
Query: 87 LNLVNGYVFKGKPMII 102
+N +NG + GKP+ +
Sbjct: 353 VNEMNGKIILGKPIFV 368
>gi|426388779|ref|XP_004060810.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Gorilla
gorilla gorilla]
Length = 229
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|317037176|ref|XP_001398705.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus niger CBS
513.88]
Length = 251
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y++NL + + D +F ++ G +++++ + + +GQAFV F +V
Sbjct: 12 PNCTVYVRNLEERIKVDQLKEALEEIF-----SEYGTVLEIVAKTNLKAKGQAFVVFDTV 66
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRN 107
E A RA++ +NG+ KPM++ + +
Sbjct: 67 EAATRAIDEINGFELFDKPMVLDYAKT 93
>gi|383847977|ref|XP_003699629.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Megachile
rotundata]
Length = 231
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 IASATNALRSMQGFPFYDKPMRIQYAK 85
>gi|255938712|ref|XP_002560126.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584747|emb|CAP74273.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 188
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 13 PMFKNYTAGNPASVLYIKNL-AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
P K T G P LY NL K + +D SLF + L V M+ +MRG
Sbjct: 12 PDSKAVTPGAPNQTLYCTNLPDKRIQKNDLRTALYSLFSTYGTV---LDVVAMKTSKMRG 68
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
QA + F V+ + +AL + G+ F GK M I + +
Sbjct: 69 QAHIVFKDVQASTQALRALQGFEFFGKQMKIVYAK 103
>gi|340726396|ref|XP_003401545.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Bombus
terrestris]
gi|350423999|ref|XP_003493658.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Bombus
impatiens]
Length = 233
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 7 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 60
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ +
Sbjct: 61 IASATNALRSMQGFPFYDKPMRIQYAKT 88
>gi|346978290|gb|EGY21742.1| U2 small nuclear ribonucleoprotein B [Verticillium dahliae VdLs.17]
Length = 194
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 16/109 (14%)
Query: 4 LPPEEILSLPMFKNYTAGNPASVLYIKNL--AKDVVPD---DFFFVFGSLFGSIDAAKSG 58
LPP SLP T P LY+ NL AK PD + + +F S +G +
Sbjct: 10 LPPN--ASLPT--KVTPIAPNQTLYVTNLPSAKIQKPDLRTELYLLF-STYGPV------ 58
Query: 59 LIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
L + M+ +MRGQA +T+ ++ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 59 LDIVAMKTMKMRGQAHITYRDIQTATQAMRSLEGFEFLGRPLRIQYAKS 107
>gi|387018112|gb|AFJ51174.1| u2 small nuclear ribonucleoprotein B-like [Crotalus adamanteus]
Length = 225
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LYI N+ + D+ +LF + +K M +MRGQAF+ F +
Sbjct: 5 PNHTLYINNVNDKIKKDELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFIIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F GKPM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYGKPMRIQYAK 85
>gi|395859649|ref|XP_003802146.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Otolemur
garnettii]
Length = 231
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 6 ARPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIF 59
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + G+ F KPM IQ+ +
Sbjct: 60 KEVSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|380024353|ref|XP_003695965.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Apis
florea]
Length = 231
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 IASATNALRSMQGFPFYDKPMRIQYAK 85
>gi|301115920|ref|XP_002905689.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
gi|262110478|gb|EEY68530.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
Length = 233
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LY+ NL + D + +L+ ++ L + + + R+RGQA+VTF V
Sbjct: 18 PNHTLYLNNLNDKIKADR---MKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDVPS 74
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A AL VNG KP++I F + A
Sbjct: 75 ASSALRTVNGTTLFDKPVVIHFAKEKA 101
>gi|432109445|gb|ELK33675.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 282
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|90077244|dbj|BAE88302.1| unnamed protein product [Macaca fascicularis]
Length = 197
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|353239405|emb|CCA71318.1| related to small nuclear ribonucleoprotein U2B` (U2 small nuclear
RNA-associated protein B`) [Piriformospora indica DSM
11827]
Length = 146
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLF---GSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
NP LYIKNL + D+ +LF G I L V ++ +MRGQAFV F
Sbjct: 3 NPNPTLYIKNLNDRINKDELRAQLYALFLPHGPI------LDVVALKTAKMRGQAFVVFQ 56
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A AL G +F KPM I++ ++ + A
Sbjct: 57 DMIAATAALRAWQGEMFYDKPMHIEYAKSKSWA 89
>gi|344250312|gb|EGW06416.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 291
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM-QEGRMRGQAFVTFPSVELAHR 85
LYIKNL D + D+ + S FGSI VK+M +EGR +G + F S E A +
Sbjct: 394 LYIKNL-DDTIDDEKLWREFSSFGSISR------VKIMREEGRSKGFGLICFSSPEEATK 446
Query: 86 ALNLVNGYVFKGKPMIIQFGRNPAAAK 112
A+ +NG + KP+ I + P K
Sbjct: 447 AMAEMNGRILGSKPLYIALAQRPXERK 473
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
N A + LY+ +L+ DV D F F ++ S I + + R G A+V
Sbjct: 101 NVEAKYRQASLYVGDLSADVTEDLLF----KKFSAVGPVLSIRICRDLVTRRSLGYAYVN 156
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
F + A +AL+ +N + KGKP+ + + + A + S
Sbjct: 157 FLKLADAQKALDTMNFDMIKGKPIRLMWSQRDAYLRKS 194
>gi|170103054|ref|XP_001882742.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642113|gb|EDR06370.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
LYI+NL + + P+ + SL G + L V RMRGQAFV+F S E+A
Sbjct: 17 CETLYIQNLNEKIKPE---VLKASLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFASPEVA 73
Query: 84 HRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+A+ V + KPM I F + + A
Sbjct: 74 KKAMKEVQRFPLYSKPMQISFAKTRSDA 101
>gi|407004871|gb|EKE21139.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 109
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYI NL ++ DD FG GS+ +A V Q+G+ +G AFV + E A +A
Sbjct: 5 LYIGNLLYEITEDDLKEYFGQA-GSVASA----TVIRFQDGKSKGFAFVEMETEEAAQKA 59
Query: 87 LNLVNGYVFKGKPMIIQFGRNP 108
++ +NG +KG+ +++ R P
Sbjct: 60 IDTLNGQDYKGRKIVVAEARPP 81
>gi|431920192|gb|ELK18231.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|440910289|gb|ELR60098.1| U1 small nuclear ribonucleoprotein A, partial [Bos grunniens mutus]
Length = 287
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 13 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 66
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 67 VSSATNALRSMQGFPFYDKPMRIQYAKT 94
>gi|395859647|ref|XP_003802145.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Otolemur
garnettii]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 6 ARPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIF 59
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 60 KEVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|390479015|ref|XP_003735632.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Callithrix jacchus]
Length = 275
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|242247219|ref|NP_001156146.1| U1 small nuclear ribonucleoprotein A-like [Acyrthosiphon pisum]
gi|239790514|dbj|BAH71814.1| ACYPI003668 [Acyrthosiphon pisum]
Length = 224
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + DD + S FG I L + M+ +M GQAFV F
Sbjct: 6 PNHTIYINNLNEKIKKDDLKKSLYAIFSQFGQI------LDIVAMKGIKMNGQAFVIFKD 59
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ + AL + G+ F KPM IQF ++ +
Sbjct: 60 ITSSTNALRAMQGFPFYDKPMRIQFAKSES 89
>gi|56605690|ref|NP_001008304.1| U1 small nuclear ribonucleoprotein A [Rattus norvegicus]
gi|55562825|gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
gi|149056537|gb|EDM07968.1| small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
Length = 281
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|354486243|ref|XP_003505291.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cricetulus griseus]
Length = 284
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|351715411|gb|EHB18330.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|348552486|ref|XP_003462058.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cavia
porcellus]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|126723082|ref|NP_001075629.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|114051315|ref|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos taurus]
gi|187607541|ref|NP_001119825.1| U1 small nuclear ribonucleoprotein A [Ovis aries]
gi|122142801|sp|Q2KIR1.1|SNRPA_BOVIN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|86437996|gb|AAI12545.1| Small nuclear ribonucleoprotein polypeptide A [Bos taurus]
gi|184191137|gb|ACC76781.1| SNPRA [Ovis aries]
gi|296477802|tpg|DAA19917.1| TPA: U1 small nuclear ribonucleoprotein A [Bos taurus]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|33357758|pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
gi|33357759|pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|116175267|ref|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus scrofa]
gi|122131847|sp|Q06AA4.1|SNRPA_PIG RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|115371743|gb|ABI96196.1| SNRPA [Sus scrofa]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|73948310|ref|XP_533663.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Canis lupus
familiaris]
gi|149722301|ref|XP_001499386.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Equus
caballus]
gi|301776649|ref|XP_002923740.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Ailuropoda
melanoleuca]
gi|403305332|ref|XP_003943221.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Saimiri
boliviensis boliviensis]
gi|281340732|gb|EFB16316.1| hypothetical protein PANDA_012942 [Ailuropoda melanoleuca]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|355721034|gb|AES07131.1| small nuclear ribonucleoprotein polypeptide A [Mustela putorius
furo]
Length = 281
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|383873129|ref|NP_001244434.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|114677331|ref|XP_512674.2| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Pan
troglodytes]
gi|297704832|ref|XP_002829283.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pongo abelii]
gi|397482634|ref|XP_003812525.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pan paniscus]
gi|402905610|ref|XP_003915609.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Papio anubis]
gi|355703564|gb|EHH30055.1| hypothetical protein EGK_10636 [Macaca mulatta]
gi|355755853|gb|EHH59600.1| hypothetical protein EGM_09749 [Macaca fascicularis]
gi|380784673|gb|AFE64212.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|383414025|gb|AFH30226.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|384943590|gb|AFI35400.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|410207170|gb|JAA00804.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
gi|410287236|gb|JAA22218.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|4759156|ref|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapiens]
gi|134092|sp|P09012.3|SNRPA_HUMAN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|315583598|pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
gi|315583607|pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
gi|37541|emb|CAA29653.1| unnamed protein product [Homo sapiens]
gi|340052|gb|AAA61245.1| U1 snRNP-specific protein A [Homo sapiens]
gi|12653273|gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|14249835|gb|AAH08290.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|119577399|gb|EAW56995.1| small nuclear ribonucleoprotein polypeptide A, isoform CRA_a [Homo
sapiens]
gi|208967436|dbj|BAG73732.1| small nuclear ribonucleoprotein polypeptide A [synthetic construct]
Length = 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|410983004|ref|XP_003997834.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Felis catus]
Length = 282
Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|384496525|gb|EIE87016.1| hypothetical protein RO3G_11727 [Rhizopus delemar RA 99-880]
Length = 292
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
RMRGQAFV +P E A +A+ + +V KPMI+Q+ RN
Sbjct: 108 RMRGQAFVAYPDQESADKAIKELQHFVLYDKPMIVQYSRN 147
>gi|392574488|gb|EIW67624.1| hypothetical protein TREMEDRAFT_33230 [Tremella mesenterica DSM
1558]
Length = 250
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 22 NPASVLYIKNLAKDV-VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
N LY++NL + V +P G LF + L V + RMRGQAFVTF V
Sbjct: 23 NACETLYLQNLNEKVRLPAVMKETLGVLFKPY---RPILPVVAHRNVRMRGQAFVTFHDV 79
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRN 107
E A+RA V + GKP+ I+F ++
Sbjct: 80 ETANRARREVGEFPLYGKPIQIKFAKS 106
>gi|444732044|gb|ELW72368.1| U1 small nuclear ribonucleoprotein A [Tupaia chinensis]
Length = 282
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|344298221|ref|XP_003420792.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Loxodonta
africana]
Length = 200
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 22 NPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|126329351|ref|XP_001371614.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Monodelphis
domestica]
Length = 340
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 65 SRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIF 118
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ ++
Sbjct: 119 KEISSATNALRSMQGFPFYDKPMRIQYAKS 148
>gi|395529330|ref|XP_003766769.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Sarcophilus
harrisii]
Length = 241
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ ++
Sbjct: 62 ISSATNALRSMQGFPFYDKPMRIQYAKS 89
>gi|380494672|emb|CCF32976.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 204
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 22 NPASVLYIKNL-----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
+P LY+ NL K + + + +F S +G + L + ++ +MRGQA +T
Sbjct: 24 SPNQTLYVTNLPSNKIQKQDLRTELYLLF-STYGPV------LDIVALKTMKMRGQAHIT 76
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
F V+ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 77 FRDVQTATQAMRSLEGFEFLGRPLTIQYAKS 107
>gi|426388777|ref|XP_004060809.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Gorilla
gorilla gorilla]
Length = 282
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|444319608|ref|XP_004180461.1| hypothetical protein TBLA_0D04460 [Tetrapisispora blattae CBS 6284]
gi|387513503|emb|CCH60942.1| hypothetical protein TBLA_0D04460 [Tetrapisispora blattae CBS 6284]
Length = 133
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
LYI+N+ + ++P ++ S FG I K G +RGQAFVTF +++
Sbjct: 45 TLYIRNIPEKLLPSQVRINLYLLLSTFGEIIYIKVG-----KPRSSLRGQAFVTFRTIDE 99
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
AH A ++ +F G+ + ++F R P+
Sbjct: 100 AHVAKTALDQELFFGQSLHLEFSRQPS 126
>gi|226372064|gb|ACO51657.1| U1 small nuclear ribonucleoprotein A [Rana catesbeiana]
Length = 279
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRNLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ ++
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYSKS 89
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL KD+ + F S FG+I + K + L + G +G
Sbjct: 99 PSLRRSGVGN----IFIKNLEKDIDNKAIYDTF-SAFGNILSCK----IALDENGNSKGY 149
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
AFV F + E A+RA+ VNG + GK + +
Sbjct: 150 AFVHFETQEAANRAIEKVNGMLLSGKKVFV 179
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL DV+ D + FG+I +AK V ++G RG FV F S E A +A
Sbjct: 305 LYVKNL-DDVIDDAKLRQEFANFGTITSAK----VMSDEKGISRGFGFVCFSSPEEATKA 359
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 360 VTEMNGRIIISKPLYV 375
>gi|392883960|gb|AFM90812.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + D+ SLF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTM---KMRGQAFVIFKELCS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A L + G+ F GKPM IQ+ +
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAK 85
>gi|12851426|dbj|BAB29037.1| unnamed protein product [Mus musculus]
Length = 287
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+YI NL + + D+ ++F L+ ++M +MRGQAFV F V A
Sbjct: 17 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIM---KMRGQAFVIFKEVTSATN 73
Query: 86 ALNLVNGYVFKGKPMIIQFGRN 107
AL + G+ F KPM IQ+ +
Sbjct: 74 ALRSMQGFPFYDKPMRIQYAKT 95
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E+L Y N LYIKNL D + D+ S FGSI +AK ++++G
Sbjct: 281 ELLKQERISRYQGVN----LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDG 330
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
R +G FV F S E A +A+ +NG + KP+ + + K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|428171194|gb|EKX40113.1| hypothetical protein GUITHDRAFT_113851 [Guillardia theta CCMP2712]
Length = 336
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 29/119 (24%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPD---DFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
++Y P + LYI+NL + V P + + S +G I L V+ ++ +MRGQ
Sbjct: 77 ESYDQLPPCNTLYIRNLRERVKPRRMRELLYAVFSQYGKI------LDVRALKTQKMRGQ 130
Query: 73 AFVTFPSV----ELAH----------------RALNLVNGYVFKGKPMIIQFGRNPAAA 111
AFV F + +L H A +NG+ F + ++IQF ++P+ A
Sbjct: 131 AFVCFDELKAREQLEHVQGQSMLTPCACQDAVHAKEELNGFSFLNRTLVIQFAKSPSHA 189
>gi|432953888|ref|XP_004085464.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Oryzias latipes]
Length = 218
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ V ++ +LF S + +K M RMRGQAFV F +
Sbjct: 5 PNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTM---RMRGQAFVVFKELAA 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAK 85
>gi|328850245|gb|EGF99412.1| hypothetical protein MELLADRAFT_40307 [Melampsora larici-populina
98AG31]
Length = 252
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
+ Y++ +P+ LY++NL + +D + LF L V ++ G+MRGQAF+
Sbjct: 15 QTYSSASPSPTLYVQNLCDKLKKEDLRRMLYQLFS---VHGKVLDVVALKGGQMRGQAFI 71
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
F ++ + +A+ ++G +F + + I++ R
Sbjct: 72 VFRDLQGSTQAMRYLDGTLFLERELKIKYARK 103
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 51 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 104
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 105 VTEMNGRIVGSKPLYV 120
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG I + K + Q G +G FV+F + E A +A
Sbjct: 406 LYLKNL-DDGITDDQLRELFSNFGKITSCK----IMRDQNGVSKGSGFVSFSTREEASQA 460
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
L +NG + GKP+ + F + K
Sbjct: 461 LTEMNGKMISGKPLYVAFAQRKEERK 486
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 7 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 60
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 61 VTEMNGRIVGSKPLYV 76
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE-GRMRGQAFVTFPSVELAHR 85
LYIKNL + + + F S FGSI VK+MQE GR +G + F S E A +
Sbjct: 290 LYIKNLDETIDDEKLRREFSS-FGSISR------VKVMQEEGRSKGFGLICFSSAEEATK 342
Query: 86 ALNLVNGYVFKGKPMIIQFGRNPAAAK 112
A+ +NG + KP+ I + P K
Sbjct: 343 AMTEMNGRILGSKPLNIALAQKPXERK 369
>gi|213404018|ref|XP_002172781.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212000828|gb|EEB06488.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 485
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
+ Y G P+ +++I NL V D +F S FG I+ A + GR RG V
Sbjct: 268 RAYANGPPSPIIHIGNLPWLTVDQDLLDLFNS-FGKIERA----AIAYEPSGRSRGFGVV 322
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
F + A A+ +NGYV+ +P+ I + R
Sbjct: 323 QFQTTPEAASAIEKLNGYVYGNRPLQISYAR 353
>gi|387914214|gb|AFK10716.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392878676|gb|AFM88170.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884228|gb|AFM90946.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884422|gb|AFM91043.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884424|gb|AFM91044.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + D+ SLF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTM---KMRGQAFVIFKELCS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A L + G+ F GKPM IQ+ +
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAK 85
>gi|50546775|ref|XP_500857.1| YALI0B13860p [Yarrowia lipolytica]
gi|49646723|emb|CAG83108.1| YALI0B13860p [Yarrowia lipolytica CLIB122]
Length = 113
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
AG P ++L++KNL + D+ + +FG FG++ ++G E RG AFV +
Sbjct: 6 AGQPNNILFVKNLPYESTSDELYELFGR-FGAVRQIRAG------SEKDTRGTAFVVYED 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQF 104
++ A A+ ++G+ +K + ++ F
Sbjct: 59 IDDATEAVKTLSGFNYKNRYLVALF 83
>gi|318065773|ref|NP_001187499.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
gi|308322301|gb|ADO28288.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus furcatus]
gi|308323171|gb|ADO28722.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
Length = 219
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P +YI NL V ++ +LF G IV++ M+ +MRGQAFV F +
Sbjct: 5 PNHTIYINNLNDRVKKEELKRSLYALFSQF-----GQIVEIVAMKTMKMRGQAFVVFKEL 59
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 60 AAATNALRQLQGFPFYNKPMRIQYAK 85
>gi|62857647|ref|NP_001016784.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|60618430|gb|AAH90598.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|89273875|emb|CAJ82017.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
Length = 282
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ ++
Sbjct: 62 ISSATNALRSMQGFPFYDKPMRIQYSKS 89
>gi|114052106|ref|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|114052541|ref|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|41017904|sp|Q62189.3|SNRPA_MOUSE RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|349004|gb|AAC37611.1| small nuclear RNA [Mus musculus]
gi|13096860|gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|62740156|gb|AAH94006.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|66794539|gb|AAH96648.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|148692250|gb|EDL24197.1| mCG22754, isoform CRA_a [Mus musculus]
gi|148692251|gb|EDL24198.1| mCG22754, isoform CRA_a [Mus musculus]
Length = 287
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+YI NL + + D+ ++F L+ ++M +MRGQAFV F V A
Sbjct: 17 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIM---KMRGQAFVIFKEVTSATN 73
Query: 86 ALNLVNGYVFKGKPMIIQFGRN 107
AL + G+ F KPM IQ+ +
Sbjct: 74 ALRSMQGFPFYDKPMRIQYAKT 95
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 46 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 99
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 100 VTEMNGRIVGSKPLYV 115
>gi|17541324|ref|NP_500504.1| Protein RNP-2 [Caenorhabditis elegans]
gi|351064354|emb|CCD72715.1| Protein RNP-2 [Caenorhabditis elegans]
Length = 206
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P S LYI NL + + D+ ++F G IV +M + +MRGQA V F +
Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLVAVFKQF-----GEIVSVMCFRTLKMRGQAHVIFKEL 60
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
A A +NG+ F KPM IQF R
Sbjct: 61 PAASAAREALNGFPFYEKPMRIQFAR 86
>gi|429858035|gb|ELA32870.1| RNA binding domain-containing protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 196
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 22 NPASVLYIKNL-----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
+P LY+ NL K+ + + + +F S +G + L + M+ +MRGQA +T
Sbjct: 24 SPNQTLYVTNLPSAKIQKNDLRTELYLLF-STYGPV------LDIVAMKTMKMRGQAHIT 76
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
F ++ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 77 FRDIQAATQAMRSLEGFEFLGRPLSIQYAKS 107
>gi|339255862|ref|XP_003370674.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316965776|gb|EFV50450.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 220
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +Y+ NL + + D+ ++F + +K + +MRGQAF+ F +
Sbjct: 6 PNQTIYVNNLNEKIKKDELKRALHAVFHQFGTILDIVCLKTL---KMRGQAFIVFKDLNS 62
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL + G+ F KPM IQ+ ++ + A
Sbjct: 63 ATNALRSMQGFPFYDKPMRIQYAKSESDA 91
>gi|50304193|ref|XP_452046.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641178|emb|CAH02439.1| KLLA0B11594p [Kluyveromyces lactis]
Length = 114
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 23 PASVLYIKNLAKDV----VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P + +Y+KNL + V + + +F + G ++K+ + RGQAF+TF
Sbjct: 30 PNNTVYVKNLNDQIKIQTVRESLYMLFATY---------GEVIKVSMTPKQRGQAFITFK 80
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110
SV+ A+ AL + +F KP+++QF +
Sbjct: 81 SVDEANLALLSLKDELFFNKPLVLQFSKQTTT 112
>gi|307195443|gb|EFN77329.1| U2 small nuclear ribonucleoprotein B'' [Harpegnathos saltator]
Length = 231
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 IGSATNALRSMQGFPFYDKPMRIQYAK 85
>gi|452001712|gb|EMD94171.1| hypothetical protein COCHEDRAFT_1020240 [Cochliobolus
heterostrophus C5]
Length = 325
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGR--MRGQAFVTFPSV 80
P +VLYI NL +V PD VF S FG I++ V+++ + R RG A+V + +V
Sbjct: 134 PHNVLYIGNLYYEVTPDQLKRVF-SRFGDIES------VRMVYDNRGLSRGFAYVEYKNV 186
Query: 81 ELAHRALNLVNGYVFKGKPMIIQF 104
A A++ ++ VF+G+ +++Q+
Sbjct: 187 SDAQAAIDNLDMQVFEGRNLVVQY 210
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 321 LYLKNL-DDGISDDQLRELFSTFGKITSCK----VMRDQNGVSKGSGFVAFSTREEASQA 375
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + GKP+ + F + K
Sbjct: 376 ITEMNGKMLSGKPLYVAFAQRKEERK 401
>gi|116781538|gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +Y+ NL + V ++ + S FG I IV L + ++RGQA+V F
Sbjct: 8 PNQTIYVNNLNERVKKEELKKSLYALFSQFGRI-----ADIVAL-KTTKLRGQAWVVFDE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A AL + G+ F KPM IQ+G++ + A
Sbjct: 62 ITAASNALRQMQGFPFYDKPMRIQYGKSKSDA 93
>gi|432953883|ref|XP_004085463.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Oryzias latipes]
Length = 217
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ V ++ +LF S + +K M RMRGQAFV F +
Sbjct: 5 PNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTM---RMRGQAFVVFKELAA 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A AL + G+ F KPM IQ+ + +
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDS 88
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM-QEGRMRGQAFVTFPSVELAHR 85
LYIKNL D + D+ + S FGSI VK+M +EGR +G + F S E A +
Sbjct: 394 LYIKNL-DDTIDDEKLWREFSSFGSISR------VKIMREEGRSKGFGLICFSSPEEATK 446
Query: 86 ALNLVNGYVFKGKPMIIQFGRNP 108
A+ +NG + KP+ I + P
Sbjct: 447 AMAEMNGRILGSKPLYIALAQKP 469
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
N A + LY+ +L DV D F F ++ S I + + R G A+V
Sbjct: 101 NVAAKYRQASLYVGDLHADVTEDLLF----KKFSTVGPVLSIRICRDLVTRRSLGYAYVN 156
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
F + A RAL+ +N KGKP+ + + + A + S
Sbjct: 157 FLKLADAQRALDTMNFDTIKGKPIRLMWSQRDAYLRKS 194
>gi|119193232|ref|XP_001247222.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|320040131|gb|EFW22065.1| pre-mRNA branch site protein p14 [Coccidioides posadasii str.
Silveira]
gi|392863538|gb|EAS35707.2| pre-mRNA branch site protein p14 [Coccidioides immitis RS]
Length = 115
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL+ +V DD F +FG FG I + G+ +G AFV + V A +
Sbjct: 14 ILFVKNLSYNVTADDLFDLFGK-FGPIRQIRQGIA------ANSKGTAFVVYEDVHDAKQ 66
Query: 86 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
A + +NG+ F+ + +++ + + AK
Sbjct: 67 ACDKLNGFNFQNRYLVVLYHQPEKMAKS 94
>gi|242790897|ref|XP_002481649.1| RNP domain protein [Talaromyces stipitatus ATCC 10500]
gi|218718237|gb|EED17657.1| RNP domain protein [Talaromyces stipitatus ATCC 10500]
Length = 478
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 15 FKNY--TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
F +Y + G+ ++V+Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 364 FTDYATSGGDKSAVIYVRNLPWSTCNEDLVDLFTTI-GKVERAE----IQYEGNGRSRGT 418
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V F S E A A++ GY + G+P+ I F R
Sbjct: 419 GVVEFDSPETAETAISKFTGYQYGGRPLGITFVR 452
>gi|212534696|ref|XP_002147504.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
gi|210069903|gb|EEA23993.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
Length = 434
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 15 FKNY--TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
F +Y + G+ ++V+Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 320 FTDYATSGGDKSAVIYVRNLPWSTCNEDLVDLFTTI-GKVERAE----IQYEGNGRSRGT 374
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V F S E A A++ GY + G+P+ I F R
Sbjct: 375 GVVEFDSPETAETAISKFTGYQYGGRPLGITFVR 408
>gi|293332553|ref|NP_001169063.1| uncharacterized protein LOC100382904 [Zea mays]
gi|223974745|gb|ACN31560.1| unknown [Zea mays]
Length = 426
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 15 FKNY--TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
F +Y + G+ ++V+Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 312 FTDYATSGGDKSAVIYVRNLPWSTCNEDLVDLFTTI-GKVERAE----IQYEGNGRSRGT 366
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V F S E A A++ GY + G+P+ I F R
Sbjct: 367 GVVEFDSPETAETAISKFTGYQYGGRPLGITFVR 400
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 225 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 278
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 279 VTEMNGRIVGSKPLYV 294
>gi|440639249|gb|ELR09168.1| hypothetical protein GMDG_03746 [Geomyces destructans 20631-21]
Length = 288
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P++ +Y++NL + + D LF ++ G I+ ++ + ++ GQAFV F +V
Sbjct: 45 PSATVYVRNLEEHIKVDQLKEALTELF-----SEYGEIIDIVAKTNLKAKGQAFVVFDTV 99
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A +A++ V G+ KPM + F + + A
Sbjct: 100 ESAQKAIDEVQGFELFEKPMQLAFAKTRSDA 130
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR RG FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSRGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFG 105
+ +NG + KP+ +
Sbjct: 350 VTEMNGIIVATKPLYVSLA 368
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFEKHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELSGKQIYV 263
>gi|169599889|ref|XP_001793367.1| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
gi|160705342|gb|EAT89501.2| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
Length = 328
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
G P+S +Y++NL +D +F + G ++ A+ ++ GR RG V F
Sbjct: 222 GGEPSSTIYVRNLPWSTSNEDLVELF-TTIGKVERAE----IQYEPNGRSRGTGVVEFEK 276
Query: 80 VELAHRALNLVNGYVFKGKPMIIQF 104
E A A+ GY + G+P+ +QF
Sbjct: 277 QEDAETAIAKFTGYQYGGRPLGLQF 301
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI----VKLMQEGRMRGQAFVTFPSVEL 82
+YI NL +V D +F AA +G + V + +GR +G V F +V+
Sbjct: 61 VYIANLPYNVGWQDLKDLF------RQAAHTGSVLRADVHVAPDGRPKGSGIVAFETVDD 114
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A A+N NGY ++G+ + ++ R
Sbjct: 115 ARNAINQFNGYEWQGRNLEVREDR 138
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 46 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 99
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 100 VTEMNGRIVGSKPLYV 115
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 302 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 355
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 356 VTEMNGRIVGSKPLYV 371
>gi|239611716|gb|EEQ88703.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 190
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIAYGK 95
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL + D +F S FG I + K + Q G +G FV+F + E A +A
Sbjct: 406 LYLKNLDDGITDDQLRELF-SNFGKITSCK----IMRDQNGVSKGSGFVSFSTREEASQA 460
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
L +NG + GKP+ + F + K
Sbjct: 461 LTEMNGKMISGKPLYVAFAQRKEERK 486
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 309 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 362
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 363 VTEMNGRIVGSKPLYVALAQRKEERK 388
>gi|238499763|ref|XP_002381116.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220692869|gb|EED49215.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 327
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P S +Y++NL + V D +F ++ G ++ ++ + ++ GQAF+ F SV
Sbjct: 13 PNSTVYVRNLEERVKVDQLKEALEEIF-----SEYGNVIDIVAKTNLKAKGQAFIVFDSV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A A++ +NG+ KPM++ F + + A
Sbjct: 68 ESASNAIDEINGFELFDKPMVLDFAKTRSDA 98
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 271 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 324
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 325 VTEMNGRIVGSKPLYVALAQRKEERK 350
>gi|170284570|gb|AAI61141.1| rbm23 protein [Xenopus (Silurana) tropicalis]
Length = 272
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE---GRM 69
M N GNP + LY+ +L ++ D +F FG I+ ++L++E GR
Sbjct: 87 MSNNLQRGNPGPMRLYVGSLHFNITEDMLRGIF-EPFGKIEN------IQLLKEPDTGRS 139
Query: 70 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 140 KGFGFITFTDAECARRALEQLNGFELAGRPMKV 172
>gi|395330403|gb|EJF62786.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 270
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
++ P + LY+KNL V D+ F + +G I L V ++ +M+GQAFV
Sbjct: 2 SSTQPNTTLYLKNLNDKVKKDELRAQLFALFTTYGRI------LDVVALKGPKMKGQAFV 55
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F + A AL G VF KPM I++ + + A
Sbjct: 56 VFTDLAGATAALRGCEGMVFYDKPMHIEYAKTKSYA 91
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
AFV F + E A++A+ +NG + + + +
Sbjct: 141 AFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
>gi|261201324|ref|XP_002627062.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239592121|gb|EEQ74702.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 190
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIAYGK 95
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL +V D+F +F +G++ +A ++ + +EG+ +G FV F + + A +A
Sbjct: 232 LYVKNLDPEVTQDEFIELFKK-YGNVTSA----VISVDEEGKSKGFGFVNFETHDEAQKA 286
Query: 87 LNLVNGYVFKGKPMIIQFGRNPA 109
++ +N + KGK + + + A
Sbjct: 287 VDELNDFELKGKKLFVSRAQKKA 309
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 293 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 346
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 347 VTEMNGRIVGSKPLYVALAQRKEERK 372
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|225719260|gb|ACO15476.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL V DD + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNGKVRKDDLKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ A AL + G+ F KPM I F ++ +
Sbjct: 59 ITSATNALRSMQGFPFYDKPMRITFSKSDS 88
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
AFV F + E A++A+ +NG + + + +
Sbjct: 141 AFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|340518827|gb|EGR49067.1| predicted protein [Trichoderma reesei QM6a]
Length = 493
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 9 ILSLPMFKNYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
+L P N TAG S ++Y++NL DD +F ++ G ++ A+ ++ G
Sbjct: 376 VLPNPFTDNATAGTERSEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQYEPSG 430
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
R RG V F S E A A+ GY + G+P+ + F
Sbjct: 431 RSRGTGVVRFDSPETAETAIAKFQGYQYGGRPLNLSF 467
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
AFV F + E A++A+ +NG + + + +
Sbjct: 141 AFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|225684043|gb|EEH22327.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb03]
Length = 314
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G +++++++NL +D +F S G ++ A+ ++ GR RG V F
Sbjct: 207 SGGERSAIIFVRNLPWSTCNEDLVDLF-STIGKVERAE----IQYEPNGRSRGTGVVEFD 261
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
SVE A A+N GY + G+P+ + F
Sbjct: 262 SVENAETAINKFTGYQYGGRPLGLTF 287
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 324 LYLKNL-DDSIGDDQLRELFSNFGKITSCK----VMRDQNGLSKGSGFVAFSTREEASQA 378
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L +NG + GKP+ + F +
Sbjct: 379 LTEMNGKMISGKPLYVAFAQ 398
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ +D +FG +G+I +A +V + +G+ R F+ F + + A RA
Sbjct: 221 VFVKNLSESTTKEDLLKIFGE-YGNITSA----VVMIGMDGKSRCFGFINFENPDAASRA 275
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 276 VQELNGKKINDKEWYV 291
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F S FG+I + K V + + G+ +G FV + E A A
Sbjct: 130 IFIKNLDKMIDNKSLHETFSS-FGTILSCK----VAMDEGGQSKGFGFVQYEKEEAAQNA 184
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 185 IKSLNGMLINDKPVFV 200
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|83764541|dbj|BAE54685.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 308
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 199 SGGEKGPVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 253
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
+ E A A+ GY + G+P+ I F
Sbjct: 254 NAETAETAIAKFTGYQYGGRPLGITF 279
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|308457664|ref|XP_003091202.1| CRE-RNP-2 protein [Caenorhabditis remanei]
gi|308257956|gb|EFP01909.1| CRE-RNP-2 protein [Caenorhabditis remanei]
Length = 206
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P S LYI NL + + D+ ++F G IV +M + +MRGQA V F V
Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLVAVFKQF-----GEIVSVMCFRTLKMRGQAHVIFTDV 60
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A A + G+ F KPM IQF R + A
Sbjct: 61 SSAAAAKEALTGFPFYEKPMKIQFAREESDA 91
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 318 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 371
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 372 VTEMNGRIVGSKPLYVALAQRKEERK 397
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN ++V D+ +F S FG L VK+M++ G+ +G FV++ E A+
Sbjct: 215 VYIKNFGEEVDDDNLKELF-SQFGKT------LSVKVMRDPSGKSKGFGFVSYEKHEDAN 267
Query: 85 RALNLVNGYVFKGKPMII 102
+A+ +NG GK + +
Sbjct: 268 KAVEEMNGKEMSGKAIFV 285
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 6 PEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ 65
P LSL +F + P + LY+ +L DV + F S G + + + + + M
Sbjct: 16 PSTELSLEVF--FRGHYPMASLYVGDLHSDVTEAMLYEKF-SPAGPVLSIR---VCRDMI 69
Query: 66 EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
R G A+V F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 70 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK 117
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 313 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 366
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRKEERK 392
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+A DV DDF +F +G + ++ + QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAADVTEDDFRQLF-EKYGDVTSSS----LARDQEGKSRGFGFVNFTTHESASKA 296
Query: 87 LNLVNGYVFKGKPMII 102
++ +N F G+ + +
Sbjct: 297 VDELNNKDFHGQDLYV 312
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|406605793|emb|CCH42784.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 436
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G S +Y+ NL DD F +F + G + AA+ +K GR G A V F S
Sbjct: 354 GEKNSTIYVDNLPFATSNDDLFELFETA-GRVSAAE----IKYDPTGRPAGSAVVKFESE 408
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNP 108
E A A+N +N Y + G+P+ I F + P
Sbjct: 409 ESAEAAINELNEYSYGGRPLNITFAKLP 436
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|449016405|dbj|BAM79807.1| unknown transcriptional coactivator [Cyanidioschyzon merolae strain
10D]
Length = 275
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G+ A V+ + NLA V D +F S+ +I A ++ +EG+ +G A V + +
Sbjct: 35 GSKAVVVSVSNLAPSVTSQDIADLFNSVGPTITA-----FIRHDREGKSKGVATVKYADM 89
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A RA+ + G+P+++Q + AAA
Sbjct: 90 ETAERAVKQFHSLTLDGQPLVVQIESSGAAA 120
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|363748204|ref|XP_003644320.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887952|gb|AET37503.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
Length = 113
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 23 PASVLYIKNLAKDV----VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P S LY+ NL + + + + +F + G ++K+ ++RGQAFVT
Sbjct: 29 PRSTLYVSNLNDQIKLEALKSNLYLIFSTF---------GEVLKISMSAKLRGQAFVTLK 79
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+V+ A+ A+ + F GKP+ IQF ++
Sbjct: 80 TVDEANLAMISLRDEPFFGKPLKIQFSKS 108
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
AFV F + E A++A+ +NG + + + +
Sbjct: 141 AFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|291234615|ref|XP_002737239.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 1-like
[Saccoglossus kowalevskii]
Length = 655
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S LYI NL+ DV DD V GSLF + +IV + G +RG AF S A
Sbjct: 2 SKLYIGNLSSDV--DDS--VLGSLFEEHGVVTTSVIVPRNENGSIRGYAFADCDSQGNAQ 57
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAA 110
+A++ +NGY +G+ +++++ + A
Sbjct: 58 KAIDKLNGYNLQGQVIVVEYSTSKKA 83
>gi|270047496|ref|NP_001161808.1| U1 small nuclear ribonucleoprotein A [Apis mellifera]
Length = 231
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 23 PASVLYIKNL----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P + +YI NL KD + + +F S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNVKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 EIASATNALRSMQGFPFYDKPMRIQYAK 85
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 313 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 366
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRKEERK 392
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 287 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 340
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 341 VTEMNGRIVGSKPLYVALAQRKEERK 366
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN ++V D+ +F S FG L VK+M++ G+ +G FV++ E A+
Sbjct: 184 VYIKNFGEEVDDDNLKELF-SQFGKT------LSVKVMRDPSGKSKGFGFVSYEKHEDAN 236
Query: 85 RALNLVNGYVFKGKPMII 102
+A+ +NG GK + +
Sbjct: 237 KAVEEMNGKEMSGKAIFV 254
>gi|324507603|gb|ADY43223.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P +YI NL + D+ ++F G I+ ++ + +MRGQA V F +
Sbjct: 6 PNHTIYINNLNEKTKKDELKKALYAIFSQF-----GQIIDILAFKTLKMRGQAHVIFKEI 60
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQF R
Sbjct: 61 SSATNALRAMQGFPFYDKPMRIQFAR 86
>gi|290562822|gb|ADD38806.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P+ +YI NL + V +D + S FG I L + ++ +MRGQAFV F
Sbjct: 3 ARPSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQI------LEIVALKTLKMRGQAFVIF 56
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A A+ + G+ F KPM I F +
Sbjct: 57 KEITSATNAMRSMQGFPFYDKPMRIAFSK 85
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
A+ LY+KNL D + ++ S FGSI + K V L Q+G +G FV F + E A
Sbjct: 314 AANLYLKNLG-DTIDEERLKELFSEFGSITSCK----VMLDQQGLSKGSGFVAFSTPEEA 368
Query: 84 HRALNLVNGYVFKGKPMII 102
RAL+ +NG + KP+ +
Sbjct: 369 SRALSEMNGKMIGKKPLYV 387
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL++ +D +F S +G+I +A IV Q G+ RG FV F S + A A
Sbjct: 214 VYVKNLSETTSDEDLKKIFSS-YGAITSA----IVMKDQNGKSRGFGFVNFQSPDSAAAA 268
Query: 87 LNLVNGYVFKGK 98
+ +NG F K
Sbjct: 269 VEKLNGMTFSDK 280
>gi|320589234|gb|EFX01696.1| pre-mRNA branch site protein [Grosmannia clavigera kw1407]
Length = 178
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFELFGK-FGPIRQVRQGI------ANNTKGTAFVVYEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NGY F+ + +++ + + AK
Sbjct: 68 CDKLNGYNFQNRYLVVLYHQPEKMAK 93
>gi|119478950|ref|XP_001259504.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
gi|119407658|gb|EAW17607.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
Length = 251
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P +Y++NL + + D +F ++ G IV ++ + ++ GQAF+ F +V
Sbjct: 13 PNPTVYVRNLEERIKIDQLKVALEEIF-----SEYGNIVDIVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A RA+ VNG+ KPM++ + + + A
Sbjct: 68 ESATRAIEEVNGFELFDKPMVLDYAKTRSDA 98
>gi|295672938|ref|XP_002797015.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282387|gb|EEH37953.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 197
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYGK 95
>gi|225680763|gb|EEH19047.1| U1 small nuclear ribonucleoprotein A [Paracoccidioides brasiliensis
Pb03]
Length = 197
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYGK 95
>gi|400593014|gb|EJP61025.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 481
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 13 PMFKNYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
P N T+G S ++Y++NL DD +F ++ G ++ A+ ++ GR RG
Sbjct: 368 PFTDNATSGTERSEIIYVRNLPWSTSNDDLIELFTTI-GKVEQAE----IQYEPSGRSRG 422
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
V F + E A A++ GY + G+P+ I F
Sbjct: 423 SGVVKFDTAETAETAISKFQGYQYGGRPLNISF 455
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S+FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRKEFSVFGTITSAKV-----MMDDGRSKGFGFVCFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 343 VTDMNGRIVGTKPLYV 358
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L DV F F ++ A S + + M R G A+V F ++ A RA
Sbjct: 4 LYVGDLHSDVTEAMLF----EKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERA 59
Query: 87 LNLVNGYVFKGKPMIIQFG-RNPAAAK 112
L+ +N + KG+PM I + R+P+ K
Sbjct: 60 LDTMNFDILKGRPMRIMWSQRDPSLRK 86
>gi|225710606|gb|ACO11149.1| U1 small nuclear ribonucleoprotein A [Caligus rogercresseyi]
Length = 217
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + V DD + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ AL + G+ F KPM I F + +
Sbjct: 59 ITSGTNALRSMQGFPFYDKPMRISFSKTDS 88
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YIKN++ +V D+F +F + FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 247 IYIKNISGEVTDDEFRDLF-TPFGDVTSSS----LARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 302 VDDLNGKDFRGQDLYV 317
>gi|68074359|ref|XP_679094.1| u1 small nuclear ribonucleoprotein a [Plasmodium berghei strain
ANKA]
gi|56499751|emb|CAH97936.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium berghei]
Length = 371
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI--VKLMQEGRMRGQAFVTFPSV 80
P LYIKNL + +D ++F GLI + +M+ +GQA++ + ++
Sbjct: 88 PNETLYIKNLNDKIKCEDMKKSLKNIFNQY-----GLIEDIIVMKSFWRKGQAWIVYDTI 142
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
E + +ALN + G+V GK M I + N +
Sbjct: 143 ESSTKALNSLQGFVLFGKIMQINYSHNKS 171
>gi|341897441|gb|EGT53376.1| CBN-RNP-2 protein [Caenorhabditis brenneri]
Length = 206
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P S LYI NL + + ++ ++F G IV +M + RMRGQA V F +
Sbjct: 6 PNSTLYINNLNEKIKIEELRKSLIAVFKQF-----GEIVSVMCFRTLRMRGQAHVIFTDI 60
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
A A + G+ F KPM IQF R A
Sbjct: 61 SAASAAKEALTGFPFYEKPMKIQFAREDA 89
>gi|342885057|gb|EGU85166.1| hypothetical protein FOXB_04281 [Fusarium oxysporum Fo5176]
Length = 243
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P S +Y++NL + V D ++F A+ G +V ++ + +R GQAFV + +
Sbjct: 6 PISTVYVQNLEERVKLDALVDTLRTVF-----AEFGNVVDIVAKKNLRAKGQAFVVYDNP 60
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
E A A+N ++G+ GKPM + F R +
Sbjct: 61 ESAQDAINEIDGFELFGKPMKLAFARTQS 89
>gi|326433216|gb|EGD78786.1| hypothetical protein PTSG_01762 [Salpingoeca sp. ATCC 50818]
Length = 462
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSVEL 82
+ +YI NL + V D+ ++F G I+++ M+ RGQAFV F SV+
Sbjct: 174 NTIYINNLNEKVKEDELKKALTAVFKQF-----GKILQIVAMKSYYRRGQAFVVFDSVDS 228
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A A++ + G+ F GKPM I F +
Sbjct: 229 AKAAISAMQGFPFVGKPMRINFAK 252
>gi|225713086|gb|ACO12389.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
P+ +YI NL + V +D + S FG I L + ++ +MRGQAFV F
Sbjct: 3 ARPSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQI------LEIVALKTLKMRGQAFVIF 56
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A A+ + G+ F KPM I F +
Sbjct: 57 KEITSATNAMRSMQGFPFYDKPMRIAFSK 85
>gi|255553401|ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223543140|gb|EEF44674.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 233
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + V ++ + S +G I L V ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRI------LDVVALKTPKLRGQAWVCFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + G+ F KPM IQ+ +
Sbjct: 62 VMAASNAVRQMQGFPFYDKPMRIQYAK 88
>gi|171849013|pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|171849018|pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|171849022|pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|290790099|pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 59 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 88
>gi|392570636|gb|EIW63808.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 281
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 25 SVLYIKNLAKDV-VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
LYI+NL + + +P + SL G + L V RMRGQAFV+F ++A
Sbjct: 56 ETLYIQNLNEKIKIP----VLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFADADVA 111
Query: 84 HRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+AL V G+ KPM I F R + A
Sbjct: 112 KKALKEVRGFPLYTKPMQISFARTRSDA 139
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|291234607|ref|XP_002737237.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Saccoglossus
kowalevskii]
Length = 249
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + V D+ + S FG I L + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDELKKSLYAIFSQFGQI------LDIVAMKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM I + +
Sbjct: 59 ISSATNALRSMQGFPFYDKPMRIGYSK 85
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL + D +F S FG I + K + Q G +G FV+F + E A +A
Sbjct: 207 LYLKNLDDGITDDQLRELF-SNFGKITSCK----IMRDQNGVSKGSGFVSFSTREEASQA 261
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
L +NG + GKP+ + F + K
Sbjct: 262 LTEMNGKMISGKPLYVAFAQRKEDRK 287
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ DD VF S +G+I +A +V + +G+ R FV F S + A RA
Sbjct: 104 VFVKNLSESTTKDDLVKVF-SGYGTITSA----VVMIGMDGKSRCFDFVNFESPDDAARA 158
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 159 VEELNGKKINDKEWYV 174
>gi|406988412|gb|EKE08420.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 123
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ NL D D +FGS +G + K I+ GR RG AFV + + A +A
Sbjct: 8 LYVGNLNFDASEDQVRELFGS-YGEVQEVK---IIMDRFSGRSRGFAFVRMATADEAGKA 63
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+ ++G F+GK ++I + R+ ++P+
Sbjct: 64 KDALSGQPFQGKSLVIDWARSEQTSRPA 91
>gi|409050372|gb|EKM59849.1| hypothetical protein PHACADRAFT_181793 [Phanerochaete carnosa
HHB-10118-sp]
Length = 258
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVT 76
++ P + LYIKNL V ++ +LF + G ++ + ++ +MRGQAFV
Sbjct: 2 SSTQPQATLYIKNLNDKVNKEELKHQLHALFTTY-----GRVIDVVALKTQKMRGQAFVV 56
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F + A AL G F KPM I++ + + A
Sbjct: 57 FGDLAGATAALRACEGLDFYDKPMHIEYAKQKSYA 91
>gi|126031306|pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031309|pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031312|pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031315|pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
Length = 94
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 4 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 57
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 58 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 87
>gi|449295579|gb|EMC91600.1| hypothetical protein BAUCODRAFT_38709 [Baudoinia compniacensis UAMH
10762]
Length = 239
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 23 PASVLYIKNLAKDV-----VP--DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
P++ +YIKNL +DV VP + F FG++ + AK + + +GQAF+
Sbjct: 10 PSATIYIKNLDEDVKLTTLVPALRELFEDFGNIIDIV--AKKSV--------KRKGQAFI 59
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ SV+ A A + +N + GKPM I+F + + A
Sbjct: 60 VYDSVDAAQDAKDEMNSFEIFGKPMHIEFAKTRSDA 95
>gi|1431699|pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431701|pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431703|pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
gi|28949021|pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
gi|28949022|pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
gi|269914461|pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
gi|269914463|pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
Length = 97
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 60
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|22219383|pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|22219386|pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|24987694|pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987697|pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987701|pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987705|pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987712|pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987713|pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|49259013|pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
gi|49259015|pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
gi|49259033|pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
gi|49259520|pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
gi|49259522|pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
gi|49259524|pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
gi|49259526|pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
gi|49259528|pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
gi|49259530|pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
gi|49259532|pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
gi|145580050|pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
gi|145580056|pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|52696011|pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
gi|75765951|pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
gi|262367893|pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367896|pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367899|pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367902|pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367905|pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367908|pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367911|pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367914|pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367929|pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367932|pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367935|pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367938|pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367941|pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367944|pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367947|pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367950|pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|266618687|pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|304445913|pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445915|pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445917|pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
gi|304445919|pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
gi|304445933|pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|327533656|pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
gi|345110840|pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
gi|345110843|pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
gi|345110846|pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
gi|345110849|pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
gi|367460217|pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
gi|367460220|pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
gi|367460223|pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
gi|367460226|pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|393233936|gb|EJD41503.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 249
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVE 81
+ LYI+NL + + +LF S G ++ ++ RMRGQAFV+F S +
Sbjct: 23 SETLYIQNLNEKIKITVMKQTLKNLFKSY-----GNVLDVVAHSNIRMRGQAFVSFESKD 77
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+A +AL V G+ KPM + F + + A
Sbjct: 78 IARKALKEVKGFPLYSKPMQVSFAKTRSDA 107
>gi|281500860|pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500861|pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500862|pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500863|pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 60
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ S FG+I +AK +++EG
Sbjct: 273 EQLKMERLTRYQGVN----LYVKNL-DDSIDDERLRKEFSPFGTITSAKV-----MLEEG 322
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 323 RSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
>gi|90103266|gb|ABD85478.1| small nuclear ribonucleoprotein polypeptide A [Ictalurus punctatus]
Length = 156
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + + +MRGQAFV F V
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVARTVKMRGQAFVIFKEVNS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQ 89
>gi|268553733|ref|XP_002634853.1| C. briggsae CBR-RNP-2 protein [Caenorhabditis briggsae]
Length = 206
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 22 NPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P S LYI NL + + D+ F FG I L V + +MRGQA + F
Sbjct: 5 QPNSTLYINNLNEKIKIDELRKSLFAVFKQFGEI------LDVMCFRTLKMRGQAHIIFA 58
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ A A ++G+ F KPM IQF R A
Sbjct: 59 EIPHATAAKEALSGFPFYEKPMKIQFAREDA 89
>gi|159164266|pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+S LY+ +L ++ D +F FG ID +++K GR +G F+TF E A
Sbjct: 5 SSGLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECA 60
Query: 84 HRALNLVNGYVFKGKPMII 102
RAL +NG+ G+PM +
Sbjct: 61 RRALEQLNGFELAGRPMRV 79
>gi|10880789|gb|AAG24388.1|AF275678_1 PP239 protein [Homo sapiens]
Length = 418
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 229 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGY 284
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 285 GFITFSDSECARRALEQLNGFELAGRPMRV 314
>gi|27803030|emb|CAD60733.1| unnamed protein product [Podospora anserina]
Length = 516
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 4 LPPEEILSLPMFKNYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+PP P N TAG + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 400 VPPN-----PFTDNATAGTEKNEIIYVRNLPWSTSNDDLVELFSTI-GKVEQAE----IQ 449
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F + + A A+N GY + G+P+ + +
Sbjct: 450 YEPSGRSRGSGVVRFDNADTAETAINKFQGYQYGGRPLGLSY 491
>gi|301624539|ref|XP_002941556.1| PREDICTED: RNA-binding protein 39 [Xenopus (Silurana) tropicalis]
Length = 420
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GNP + LY+ +L ++ D +F FG I+ + ++K GR +G
Sbjct: 235 MSNNLQRGNPGPMRLYVGSLHFNITEDMLRGIFEP-FGKIENIQ---LLKEPDTGRSKGF 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 291 GFITFTDAECARRALEQLNGFELAGRPM 318
>gi|282403767|pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403770|pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403773|pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403776|pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
Length = 90
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 55
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 56 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 85
>gi|297743790|emb|CBI36673.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P +++ A A+ L I++L + +P D LF S A+ V+ GR+R
Sbjct: 9 PRTQSFEAEKSAATLLIRHLP-EAIPQD---TLSRLFSSYGASS----VRPSTSGRLRNC 60
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
AFV F S LA +AL +NG F GK ++++ P
Sbjct: 61 AFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPT 97
>gi|402079726|gb|EJT74991.1| small nuclear ribonucleoprotein [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y++NL + V P+ V ++F G IV ++ + R +GQAFV F
Sbjct: 6 PISTVYVRNLEERVKPEALKEVLATIFSDY-----GTIVDIVAKTNLRAKGQAFVVFDDP 60
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA++ V G+ +PM + R + A
Sbjct: 61 DSAQRAVDEVQGFELFDRPMHLAIARTRSDA 91
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 107 LYIKNLD-DTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 160
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 161 VTEMNGRIVGSKPLYVALAQRKEERK 186
>gi|451998492|gb|EMD90956.1| hypothetical protein COCHEDRAFT_1137201 [Cochliobolus
heterostrophus C5]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVT 76
+ G P LY++NL + DD LF + G+I+++ ++ +MRGQA V
Sbjct: 14 SEGIPNRTLYVRNLPDKLQKDDLKRSLYMLFATY-----GVILEIVALKTMKMRGQAHVV 68
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
F V+ + +A+ + G+ F GK M I + +
Sbjct: 69 FRDVDASTQAMRALQGFTFFGKDMQIAYAKT 99
>gi|426376374|ref|XP_004054976.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Gorilla
gorilla gorilla]
Length = 403
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGY 272
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 273 GFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 326 EQLKIERLNRYQGVN----LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEG 375
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F E A +A+ +NG + KP+ +
Sbjct: 376 RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 410
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 134 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGASKGY 184
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 185 GFVHFETEEAANKSIDKVNGMLLNGKKVYV 214
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKIERLNRYQGVN----LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 367
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGASKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|266618701|pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
gi|266618702|pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 3 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 56
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 57 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 86
>gi|426376372|ref|XP_004054975.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Gorilla
gorilla gorilla]
Length = 437
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGY 306
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|440355222|gb|AGC00413.1| SNF [Antheraea pernyi]
Length = 222
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 ISSATVALRSMQGFPFYDKPMRIQYSK 85
>gi|1173326|sp|P45429.1|SNRPA_XENLA RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|65181|emb|CAA41021.1| U1 A protein [Xenopus laevis]
Length = 282
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRNLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 62 TSSATNALRSMQGFPFYDKPMRIQYSKT 89
>gi|408399464|gb|EKJ78565.1| hypothetical protein FPSE_01231 [Fusarium pseudograminearum CS3096]
Length = 173
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 73 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVTDAKQA 125
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG+ F+ + +++ + + AK
Sbjct: 126 CDKLNGFNFQNRYLVVLYHQPDKMAK 151
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ S FG+I +AK +++EG
Sbjct: 273 EQLKMERLTRYQGVN----LYVKNL-DDSIDDERLRKEFSPFGTITSAKV-----MLEEG 322
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 323 RSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V ++G +G
Sbjct: 82 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDEKGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ ++ VNG + GK + +
Sbjct: 133 GFVHFETEESANTSIEKVNGMLLNGKKVYV 162
>gi|148222234|ref|NP_001080089.1| U1 small nuclear ribonucleoprotein A [Xenopus laevis]
gi|27924189|gb|AAH44979.1| Snf protein [Xenopus laevis]
Length = 282
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRNLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 62 TSSATNALRSMQGFPFYDKPMRIQYSK 88
>gi|426376370|ref|XP_004054974.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Gorilla
gorilla gorilla]
Length = 421
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGY 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 291 GFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|148687025|gb|EDL18972.1| mCG119436 [Mus musculus]
Length = 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + F S FG I L + + + +MR QAFV F V
Sbjct: 14 TIYINNLNEKIKKDELKKSLYAFFSQFGQI------LDILVSRSLKMRSQAFVIFKEVTS 67
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 68 ATNALRSMQGFPFYDKPMRIQYAKT 92
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE-GRMRGQAFVTFPSVELAHR 85
LYIKNL + + + F S FGSI VK+MQE GR +G + F S E A +
Sbjct: 295 LYIKNLDETIDDEKLRREFSS-FGSISR------VKVMQEEGRSKGFGLICFSSAEEATK 347
Query: 86 ALNLVNGYVFKGKPMIIQFGRNP 108
A+ +NG + KP+ I + P
Sbjct: 348 AMTEMNGRILGSKPLNIALAQKP 370
>gi|2982060|pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
gi|157874113|pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
gi|157874114|pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------LDILVSRSLKMRGQAFVIFKE 60
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 VSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|358379777|gb|EHK17456.1| hypothetical protein TRIVIDRAFT_194675 [Trichoderma virens Gv29-8]
Length = 196
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 23 PASVLYIKNL--AKDVVPD--DFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P LY+ NL AK PD ++ S FG + L + ++ MRGQA + F
Sbjct: 25 PNQTLYVTNLPSAKIQKPDLRTALYMLFSTFGPV------LDIVALKTMEMRGQAHIVFR 78
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++ A +A+ ++G F G+PM IQ+ ++
Sbjct: 79 DIQAATQAMRSLDGQTFLGRPMKIQYAKS 107
>gi|350296577|gb|EGZ77554.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 356
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K + S L++ NL + DD + + F + AKS +V + GR RG +V
Sbjct: 99 KTEEVADDKSTLWVGNLGWGI--DDAILL--AEFEDCEGAKSARVVTDRESGRSRGFGYV 154
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
F + E A +A + +G + +G+ M + F A KP
Sbjct: 155 DFATNEQAQKAYDAKSGALLEGREMRLDFAAKDAGNKP 192
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 44 VFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103
V F S+ + S I + GR +G A+VTF SVE A A +NG G+P+ +
Sbjct: 227 VVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLD 286
Query: 104 FGR 106
+ +
Sbjct: 287 YAK 289
>gi|336464486|gb|EGO52726.1| hypothetical protein NEUTE1DRAFT_91358 [Neurospora tetrasperma FGSC
2508]
Length = 356
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K + S L++ NL + DD + + F + AKS +V + GR RG +V
Sbjct: 99 KTEEVADDKSTLWVGNLGWGI--DDAILL--AEFEDCEGAKSARVVTDRESGRSRGFGYV 154
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
F + E A +A + +G + +G+ M + F A KP
Sbjct: 155 DFATNEQAQKAYDAKSGALLEGREMRLDFAAKDAGNKP 192
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 44 VFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103
V F S+ + S I + GR +G A+VTF SVE A A +NG G+P+ +
Sbjct: 227 VVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLD 286
Query: 104 FGR 106
+ +
Sbjct: 287 YAK 289
>gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+YI NL + + D+ ++F L+ ++M +M+GQAFV F V A
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIM---KMKGQAFVIFKEVNSASN 67
Query: 86 ALNLVNGYVFKGKPMIIQFGRN 107
AL + G+ F KPM IQ+ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKQ 89
>gi|327297312|ref|XP_003233350.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326464656|gb|EGD90109.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 256
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y++NL + + + +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 13 PNPTVYVRNLEERIKVEQLKEALTEIF-----SEYGSILEIVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A RA++ VNG+ KPM++++ + + A
Sbjct: 68 ESATRAIDEVNGFELFEKPMVLEYAKTKSDA 98
>gi|443925378|gb|ELU44231.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 154
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVE 81
+ LYI+NL + V + SLF G I+ ++ G RMRGQAFV+F S E
Sbjct: 53 SETLYIQNLNEKVKIEQMKSTLRSLFKGY-----GKILDVVAHGNLRMRGQAFVSFESKE 107
Query: 82 LAHRALNLVNGYVFKGKPMI 101
+A +AL V + KPM+
Sbjct: 108 VAAKALKEVKNFPLYAKPMV 127
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 206 EQLKIERLNRYQGVN----LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEG 255
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F E A +A+ +NG + KP+ +
Sbjct: 256 RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 290
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGASKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|46107306|ref|XP_380712.1| hypothetical protein FG00536.1 [Gibberella zeae PH-1]
Length = 173
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 73 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVTDAKQA 125
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG+ F+ + +++ + + AK
Sbjct: 126 CDKLNGFNFQNRYLVVLYHQPDKMAK 151
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+A DV DDF +F +G + ++ + QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAADVTEDDFRQLF-EKYGDVTSSS----LARDQEGKSRGFGFVNFTTHESAFKA 296
Query: 87 LNLVNGYVFKGKPMII 102
++ +N F G+ + +
Sbjct: 297 VDELNNKDFHGQDLYV 312
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 305 EQLKIERLNRYQGVN----LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEG 354
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F E A +A+ +NG + KP+ +
Sbjct: 355 RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 389
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 113 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VTQDESGASKGY 163
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A++++ VNG + GK + +
Sbjct: 164 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 193
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 318 LYLKNL-DDSIGDDQLCELFSNFGKITSYK----VMRDQNGLSKGSGFVAFSTREEASQA 372
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
L +NG + GKP+ + F + K
Sbjct: 373 LTEMNGKMISGKPLYVAFAQRKEDRK 398
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 8 EILSLPMFKN------YTAGNPASV------LYIKNLAKDVVPDDFFFVFGSLFGSIDAA 55
E+L+ N Y+ +P+S ++IKNL K + F S FG+I +
Sbjct: 93 EVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSS-FGTILSC 151
Query: 56 KSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
K V + + G+ +G FV + E A A+ +NG + KP+ +
Sbjct: 152 K----VAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFV 194
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ +D +FG +G I +A +V + +G+ R F+ F + + A A
Sbjct: 215 VFVKNLSESTTKEDLLKIFGE-YGDITSA----VVMIGMDGKSRCFGFINFENPDAASHA 269
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 270 VQELNGKKINDKEWYV 285
>gi|326427500|gb|EGD73070.1| hypothetical protein PTSG_12213 [Salpingoeca sp. ATCC 50818]
Length = 1010
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
+ L+++NLA V +D ++F I + IVK Q G RG +V F E A
Sbjct: 24 ATLFVRNLAFSVTAEDL----ENVFSDIGPVRQCFIVKTPQGGS-RGFGYVLFGMREDAM 78
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
A ++G+ G+PM +QF R A P+
Sbjct: 79 EAQKQLDGHKLHGRPMSVQFARRKGAQGPA 108
>gi|358387229|gb|EHK24824.1| hypothetical protein TRIVIDRAFT_215683 [Trichoderma virens Gv29-8]
Length = 116
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ G +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------GNTKGTAFVVYEDVMDAKQA 68
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE-GRMRGQAF 74
K G + LYIKNL +++ + F S FGSI VK+MQE G+ +G
Sbjct: 284 KERIRGCQGAKLYIKNLDENIDDEKLRKEFSS-FGSISR------VKVMQEEGQSKGFGL 336
Query: 75 VTFPSVELAHRALNLVNGYVFKGKPMII 102
+ F S E A RA+ ++NG + KP+ I
Sbjct: 337 ICFSSSEDAARAMTVMNGRILGSKPLNI 364
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN D+ + VF S +G I L VK+M G+ RG FV+F S E A
Sbjct: 192 VYIKNFGDDMDDERLREVF-STYGRI------LSVKVMTNSCGKSRGFGFVSFDSHEAAR 244
Query: 85 RALNLVNGYVFKGKPMII 102
+A+ +NG G+P+ +
Sbjct: 245 KAVEEMNGKEVNGQPIFV 262
>gi|371874989|ref|NP_001243119.1| U2 small nuclear ribonucleoprotein B'' [Danio rerio]
Length = 220
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M RMRGQAFV F +
Sbjct: 5 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTM---RMRGQAFVIFKELSA 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAK 85
>gi|119586631|gb|EAW66227.1| RNA binding motif protein 23, isoform CRA_f [Homo sapiens]
Length = 269
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 81 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGY 136
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 137 GFITFSDSECARRALEQLNGFELAGRPMRV 166
>gi|448537900|ref|XP_003871410.1| Gbp2 single-strand telomeric DNA-binding protein [Candida
orthopsilosis Co 90-125]
gi|380355767|emb|CCG25285.1| Gbp2 single-strand telomeric DNA-binding protein [Candida
orthopsilosis]
Length = 452
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P ++++NL DD F +F ++ G + A+ ++ ++GR G A V F VE
Sbjct: 373 PNDTIFVENLPFSTQNDDLFDLFETI-GRVTKAE----IQYQEDGRASGNAVVQFELVES 427
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +LN +NGY + G+ + I + R
Sbjct: 428 ATASLNELNGYEYGGRRLKISYKR 451
>gi|259016306|sp|O59670.2|PM14_SCHPO RecName: Full=Pre-mRNA branch site p14-like protein
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S+L+IKNL+ + ++ + +FG +G + + G V+ RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGR-YGPVRQIRLGNTVQ------TRGTAFVVYENVQDAR 64
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAK 112
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN++ DV ++F +F +G + ++ + QEG+ RG FV F + E A++A
Sbjct: 242 VYVKNISPDVTDNEFRELF-EKYGDVTSSS----LARDQEGKSRGFGFVNFTTHEAAYKA 296
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 297 VDELNGNDFRGQELYV 312
>gi|221044666|dbj|BAH14010.1| unnamed protein product [Homo sapiens]
Length = 270
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 81 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGY 136
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 137 GFITFSDSECARRALEQLNGFELAGRPMRV 166
>gi|384495073|gb|EIE85564.1| hypothetical protein RO3G_10274 [Rhizopus delemar RA 99-880]
Length = 437
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D+ D F F +FG I +A+ +++ Q + RG FV+F E A RA
Sbjct: 102 LYIKNLDLDIESMDLFTHF-RVFGKIVSAR---VMRHPQTNQSRGFGFVSFSRAEDALRA 157
Query: 87 LNLVNGYVFKGKPMIIQF 104
+NG KPM++ F
Sbjct: 158 KQEMNGQRLGSKPMVVAF 175
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 254 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 303
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 304 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGK 98
FV F + E A+++++ VNG + GK
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|443720886|gb|ELU10438.1| hypothetical protein CAPTEDRAFT_179768 [Capitella teleta]
Length = 218
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ F S FG I + + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLFAIFSQFGHI------IDIVALKTLKMRGQAFVIFKD 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A AL + G+ F KPM I + + + A
Sbjct: 59 ISSATNALRSMQGFPFYDKPMRINYSKKDSDA 90
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 262 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 311
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 312 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 346
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
FV F + E A+++++ VNG + GK +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKL 169
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|295442846|ref|NP_595835.2| Pre-mRNA branch site p14-like protein [Schizosaccharomyces pombe
972h-]
gi|254745590|emb|CAA18384.2| U2 snRNP-associated protein SF3B14 ortholog (predicted)
[Schizosaccharomyces pombe]
Length = 114
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S+L+IKNL+ + ++ + +FG +G + + G V+ RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGR-YGPVRQIRLGNTVQ------TRGTAFVVYENVQDAR 64
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAK 112
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 254 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 303
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 304 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGK 98
FV F + E A+++++ VNG + GK
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S G + + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLFEKFSSA-GPVLSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL +V D F +F S FG++ +A +++ +EG+ +G FV F + E A +A
Sbjct: 237 LYVKNLDLEVTQDQFVELF-SQFGAVTSA----VIQTDEEGKSKGFGFVNFENHEQAAKA 291
Query: 87 LNLVNGYVFKGKPMIIQFGRNPA 109
++ ++ F GK + + + A
Sbjct: 292 VDTLHDTDFNGKKLFVSRAQKKA 314
>gi|377835922|ref|XP_003688944.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + Q +MRGQ FV F V +
Sbjct: 14 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSQSLKMRGQVFVIFKEVTI 67
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 68 ATNALRSMLGFPFYDKPMRIQYAKT 92
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D+ F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N + KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRK 95
>gi|320162914|gb|EFW39813.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 844
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 18 YTAGNPASVLYIKNLAKDVVPDDFFFVF--------GSLFGSIDAAKSGLIVKLMQEGRM 69
Y G+ +S L+I+NL+ D + V+ G+ S+ AA + ++L+ G
Sbjct: 704 YQPGSQSSRLFIRNLSDRTRLRDLYAVYNRYRAGLTGAPEASLAAASQNVRIQLITGGPF 763
Query: 70 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN--PAAAKPS 114
+ QAFVT + A AL +G V KGKP+++ F + P AK +
Sbjct: 764 KHQAFVTLANEACASVALEETHGVVIKGKPLVVHFATSDRPRKAKAA 810
>gi|307110924|gb|EFN59159.1| hypothetical protein CHLNCDRAFT_50008 [Chlorella variabilis]
Length = 236
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPS 79
N +Y+ NL + V DD +FG G I+ ++ R+RGQA+V F
Sbjct: 19 NEGHTVYVNNLPEKVSQDDLKKAMHCIFGQF-----GKILDVVSRRTYRLRGQAWVVFEK 73
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A AL+ + G+ F KP+ I + + A
Sbjct: 74 AEDAKNALDCMQGFPFLDKPLRIALAKTKSDA 105
>gi|327276255|ref|XP_003222885.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Anolis
carolinensis]
Length = 280
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P +YI NL + + D F L SG I+ ++ +MRGQAFV F V
Sbjct: 8 PNHTIYINNLNEKIKKDGKFISVSMLLNP-----SGQILDILVSHSMKMRGQAFVIFKEV 62
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F KPM IQ+ +
Sbjct: 63 SSSTNALRSMQGFPFYDKPMRIQYAK 88
>gi|313238053|emb|CBY13172.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFP 78
G P LY+KNL + + ++F + G+++ +M + ++RGQAF+T+
Sbjct: 4 GTPCHTLYVKNLNDKIKKIELTRQLYAMFSTY-----GMVLDIMVSKAPKLRGQAFITYK 58
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F K M+I F +
Sbjct: 59 DISDAANALKRMQGFPFYEKAMMISFAK 86
>gi|85111281|ref|XP_963862.1| hypothetical protein NCU03092 [Neurospora crassa OR74A]
gi|28925605|gb|EAA34626.1| predicted protein [Neurospora crassa OR74A]
Length = 428
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K + S L++ NL + DD + + F + AKS +V + GR RG +V
Sbjct: 171 KTEEVADDKSTLWVGNLGWGI--DDAILL--AEFEDCEGAKSARVVTDRESGRSRGFGYV 226
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
F + E A +A + +G + +G+ M + F A KP
Sbjct: 227 DFATNEQAQKAYDAKSGALLEGREMRLDFAAKDAGNKP 264
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 44 VFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103
V F S+ + S I + GR +G A+VTF SVE A A +NG G+P+ +
Sbjct: 299 VVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLD 358
Query: 104 FGR 106
+ +
Sbjct: 359 YAK 361
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ +V D+F +F FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 244 VYVKNINHEVTDDEFRELF-EKFGEVTSSS----LARDQEGKTRGFGFVNFTTHEAAAKA 298
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 299 VDDLNGKDFRGQDLYV 314
>gi|37748043|gb|AAH59527.1| Snrpb2 protein [Danio rerio]
Length = 229
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M RMRGQAFV F +
Sbjct: 14 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTM---RMRGQAFVIFKELSA 70
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 71 ATNALRQLQGFPFYNKPMRIQYAK 94
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL +V ++F +F + +GS+ +A IV++ EGR +G FV + S E A A
Sbjct: 228 LYIKNLDTEVTQEEFEELF-NRYGSVTSA----IVQVDDEGRSKGFGFVNYESHEEAQAA 282
Query: 87 LNLVNGYVFKGKPMII 102
++ ++ KGK + +
Sbjct: 283 VDNLHDTDLKGKKLYV 298
>gi|315044563|ref|XP_003171657.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311344000|gb|EFR03203.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 256
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y++NL + + D +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 13 PNPTVYVRNLEERIKIDQLKEALTEIF-----SEYGSILEIVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA++ VNG+ KPM++++ + + A
Sbjct: 68 DSATRAIDEVNGFELFEKPMVLEYAKTRSDA 98
>gi|225707030|gb|ACO09361.1| U2 small nuclear ribonucleoprotein B [Osmerus mordax]
Length = 219
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P +YI N+ + D+ +LF G IV + M+ +MRGQAFV F +
Sbjct: 5 PNHTIYINNVNDKIKKDELKRSLYALFSQF-----GQIVDIVAMKTIKMRGQAFVVFKEL 59
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F KPM IQ+ +
Sbjct: 60 AASTNALRQLQGFPFYNKPMRIQYAK 85
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S+FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDEHLRREFSVFGTITSAKV-----MMDDGRSKGFGFVCFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +N + KP+ + + K
Sbjct: 343 VTEMNNRIVGTKPLYVALAQRKEERK 368
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G+ +G
Sbjct: 82 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDETGQSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + A +++ VNG + GK + +
Sbjct: 133 GFVHFDMEQSATQSIEKVNGMLLNGKKVFV 162
>gi|389586007|dbj|GAB68736.1| U1A small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 376
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P LY+KNL + D+ LF + G+I L M+ +GQA+V + +V
Sbjct: 204 PNETLYVKNLNDRIKIDEMKKSLKDLF-----KQYGVIEDLVVMKSFWRKGQAWVVYDTV 258
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
E + +ALN + G+V GK M I + N +
Sbjct: 259 ESSTKALNALQGFVLFGKIMQINYSHNKS 287
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFEKHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELSGKQIYV 263
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 330 LYLKNL-DDSIGDDQLRELFSNFGKITSYK----VMRDQNGLSKGSGFVAFSTREEASQA 384
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L +NG + GKP+ + F +
Sbjct: 385 LTEMNGKMISGKPLYVAFAQ 404
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ +D VFG +GSI +A +V + +G+ R F+ F + + A RA
Sbjct: 227 VFVKNLSESTTKEDLLKVFGE-YGSITSA----VVMIGMDGKSRCFGFINFENPDAASRA 281
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 282 VQELNGKKINDKEWYV 297
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 8 EILSLPMFKN------YTAGNPASV------LYIKNLAKDVVPDDFFFVFGSLFGSIDAA 55
E+L+ + N Y+ +P+S ++IKNL K + F S FG+I +
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSS-FGTILSC 163
Query: 56 KSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
K V + + G+ +G FV + E A A+ +NG + KP+ +
Sbjct: 164 K----VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 206
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ NL + D +F S FG + +AK I+K + GR RG FV P+ E +A
Sbjct: 3 IYVANLHYRLNDADLHQIF-SEFGEVTSAK---IIKDHETGRSRGFGFVEMPNQEEGSKA 58
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
++ +NG +GK +++ R
Sbjct: 59 MDSLNGTEIEGKQLMVNEAR 78
>gi|189091838|ref|XP_001929752.1| hypothetical protein [Podospora anserina S mat+]
gi|188219272|emb|CAP49252.1| unnamed protein product [Podospora anserina S mat+]
Length = 488
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 4 LPPEEILSLPMFKNYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+PP P N TAG + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 372 VPPN-----PFTDNATAGTEKNEIIYVRNLPWSTSNDDLVELFSTI-GKVEQAE----IQ 421
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F + + A A+N GY + G+P+ + +
Sbjct: 422 YEPSGRSRGSGVVRFDNADTAETAINKFQGYQYGGRPLGLSY 463
>gi|335310533|ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa]
Length = 443
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 267 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 322
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM I
Sbjct: 323 LEQLNGFELAGRPMRI 338
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPS 79
N + +YIKN D+ + +F S FG I L VK+M + GR +G FV+F S
Sbjct: 187 NEFTNVYIKNFGDDMDDERLKEIF-SHFGKI------LSVKVMTDSRGRSKGFGFVSFDS 239
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
E A RA+ ++NG G+P+ + GR A+
Sbjct: 240 HEAAQRAVEIMNGKDLSGQPLFV--GRAQKKAE 270
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM-QEGRMRGQAFVTFPSVELAHR 85
LYIKNL D + D+ S FGSI VK+M +EGR +G + F S E A +
Sbjct: 295 LYIKNL-DDSIDDERLRREFSSFGSISR------VKVMKEEGRSKGFGLICFSSPEEATK 347
Query: 86 ALNLVNGYVFKGKPMIIQFGRNP 108
A+ +NG + K + I + P
Sbjct: 348 AMVEMNGRILGSKSLNIALAQRP 370
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + + F S FG I ++K + + RG AFV F S A RA
Sbjct: 100 VFIKNLHKSIDNKTLYEHF-SAFGKILSSKV-----MSDDAGSRGYAFVHFQSQTAADRA 153
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KG + +
Sbjct: 154 IEAMNGALLKGCRLFV 169
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGAITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLWKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNLA +V D +F S G+I + K V G+ +G FV F S + A RA
Sbjct: 306 LYVKNLADEVDDDALRDLFTSC-GTITSCK----VMKDTSGKSKGFGFVCFTSHDEATRA 360
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KGKP+ + +
Sbjct: 361 VTEMNGKMVKGKPLYVALAQ 380
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV---E 81
S LY+ +L KDV F LF S+ S + + R G A+V + S +
Sbjct: 21 SSLYVGDLEKDVTEAQLF----ELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 76
Query: 82 LAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RA+ +N +V GKPM I + R+P+A K
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWSHRDPSARK 108
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 318 VTEMNGRIVATKPLYV 333
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 161 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 214 KAVDEMNGKELNGKHIYV 231
>gi|170100094|ref|XP_001881265.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643944|gb|EDR08195.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
T P S L + NL ++ P D +FG + + +++ + GR G AF+ F
Sbjct: 50 TTTTPNSKLVVSNLHYEITPKDLTAIFGQIGTLVREP----LIRYDRSGRSSGTAFIAFE 105
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFG----RNP 108
+ A RA +G + KG+PM I F RNP
Sbjct: 106 TNAEATRAKKQFDGILAKGQPMEIVFDALPPRNP 139
>gi|440906315|gb|ELR56591.1| Putative RNA-binding protein 23 [Bos grunniens mutus]
Length = 463
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN V LY+ +L ++ D + FG ID +++K + GR +G
Sbjct: 266 MANNLQKGNGGPVRLYVGSLHCNITEDMLRGILEP-FGKIDNI---VLMKDSETGRSKGY 321
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM I
Sbjct: 322 GFITFSDSECARRALEQLNGFELAGRPMRI 351
>gi|46136649|ref|XP_390016.1| hypothetical protein FG09840.1 [Gibberella zeae PH-1]
Length = 591
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 5 PPEEILSLPMFKNY-TAG-NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
PP + F +Y TAG + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 370 PPASSVPPNPFTDYATAGSDRGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQ 424
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 425 YEPSGRSRGTGVVRFDSAETAETAITKFQGYQYGGRPLNLSF 466
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLWKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|410909846|ref|XP_003968401.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Takifugu rubripes]
Length = 273
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+YI NL + + D+ ++F L+ + M +M+GQAFV F V A
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTM---KMKGQAFVIFKEVNSASN 67
Query: 86 ALNLVNGYVFKGKPMIIQFGRN 107
AL + G+ F KPM IQ+ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKQ 89
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ FG+I +AK +I L GR +G FV F S E A +A
Sbjct: 288 LYVKNL-DDSIDDEGLREAFKQFGNITSAK--VITDL--NGRSKGFGFVCFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG +F GKP+ +
Sbjct: 343 VTEMNGRIFGGKPLYV 358
>gi|149756178|ref|XP_001494868.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Equus
caballus]
Length = 446
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 268 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 323
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 324 LEQLNGFELAGRPMRV 339
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAR 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|156548050|ref|XP_001606482.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Nasonia vitripennis]
gi|345485456|ref|XP_003425274.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Nasonia vitripennis]
Length = 230
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
+ A AL + G+ F KPM I + +
Sbjct: 59 IASATNALRSMQGFPFYDKPMRINYSK 85
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKHIYV 263
>gi|410909848|ref|XP_003968402.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Takifugu rubripes]
Length = 279
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+YI NL + + D+ ++F L+ + M +M+GQAFV F V A
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTM---KMKGQAFVIFKEVNSASN 67
Query: 86 ALNLVNGYVFKGKPMIIQFGRN 107
AL + G+ F KPM IQ+ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKQ 89
>gi|402220077|gb|EJU00150.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 276
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +Y++NL + V + +LF + L V RMRGQAFV+F E
Sbjct: 51 PCETVYVQNLNESVTMNTLKQTLTNLFKNYGEV---LDVVAHHNLRMRGQAFVSFADPEA 107
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A +A+ V+ + GKPM + F + + A
Sbjct: 108 AAKAVKEVDRFPLYGKPMKLSFAKTRSDA 136
>gi|240273174|gb|EER36696.1| RNA binding domain-containing protein [Ajellomyces capsulatus H143]
gi|325089200|gb|EGC42510.1| RNA binding domain-containing protein [Ajellomyces capsulatus H88]
Length = 190
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDIVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I + R
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYAR 95
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|47211375|emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI N+ V ++ + S FG I + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNINDKVKKEELKRSLYALLSQFGQI------VDIVAMKTMKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LTAATNALRQLQGFPFYNKPMRIQYAKT 86
>gi|449439191|ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
gi|449520549|ref|XP_004167296.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
Length = 231
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + V ++ + S +G I L V ++ R+RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKVKKEELKRSLYALFSQYGRI------LDVVALKTPRLRGQAWVAFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAK 88
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN++ + DDF +F +G + ++ + QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNISPEATEDDFRQLF-EQYGDVTSSS----LARDQEGKSRGFGFVNFTTHESAAKA 297
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>gi|343475984|emb|CCD12779.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 230
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA DV D +F S FG +D A+ I+ Q +G FV F E A A
Sbjct: 132 LIVNYLAPDVTSSDLHELF-SRFGELDGAR---IIYDKQTNMSKGYGFVYFCHAEDAKEA 187
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+ ++GY F GK + + + NP PS
Sbjct: 188 MERMSGYEFHGKWLKVGYSTNPLNIVPS 215
>gi|432890232|ref|XP_004075429.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Oryzias latipes]
gi|432890234|ref|XP_004075430.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Oryzias latipes]
Length = 272
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +M+GQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVARTLKMKGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ +
Sbjct: 62 INSASNALRSMQGFPFYDKPMRIQYSKT 89
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ DV D+F +F FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIGPDVTDDEFRELF-EKFGDVTSSS----LARDQEGKPRGFGFVNFTTHEAAFKA 296
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG F+G+ + +
Sbjct: 297 VEDLNGKDFRGQELYV 312
>gi|317028095|ref|XP_001400564.2| pre-mRNA branch site p14-like protein [Aspergillus niger CBS
513.88]
Length = 122
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 9 ILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGR 68
ILS P A +L++KNL +V + F +FG FG I + G+
Sbjct: 4 ILSHPRMSRKLAPEANRILFVKNLNYNVTAEQLFDLFGK-FGPIRQIRQGIA------NN 56
Query: 69 MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
+G AFV + V A +A + +NG+ F+ + +++
Sbjct: 57 SKGTAFVVYEDVHDAKQACDKLNGFNFQNRYLVV 90
>gi|410917616|ref|XP_003972282.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Takifugu rubripes]
Length = 246
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI N+ V ++ + S FG I + + M+ +MRGQAFV F
Sbjct: 32 PNHTIYINNINDKVKKEELKRSLYALLSQFGQI------VDIVAMKTMKMRGQAFVIFKE 85
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ +
Sbjct: 86 LTAATNALRQLQGFPFYNKPMRIQYAKT 113
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
>gi|149756180|ref|XP_001494897.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Equus
caballus]
Length = 430
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 307
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 308 LEQLNGFELAGRPMRV 323
>gi|221060785|ref|XP_002261962.1| U1 small nuclear ribonucleoprotein a [Plasmodium knowlesi strain H]
gi|193811112|emb|CAQ41840.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium knowlesi
strain H]
Length = 499
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P LY+KNL + D+ LF + G+I L M+ +GQA+V + +V
Sbjct: 218 PNETLYVKNLNDRIKIDEMKKSLKDLF-----KQYGVIEDLVVMKSFWRKGQAWVVYDTV 272
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRN 107
E + +ALN + G+V GK M I + N
Sbjct: 273 ESSTKALNALQGFVLFGKIMQINYSHN 299
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL D + D+ S FG+I +AK +M++
Sbjct: 283 EALKMERLNRYQGVN----LYVKNL-DDTIDDERLRKEFSPFGTITSAKV-----MMEDN 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F S E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 367
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + + + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDRSIDNKAMYDTF-SAFGNILSCK----VAQDENGTSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL +V DDF +F FG++ +A +++ ++G+ RG FV F + E A +A
Sbjct: 231 IYVKNLDPEVTQDDFVKLF-EQFGNVTSA----VIQTDEQGQSRGFGFVNFETHEEAQKA 285
Query: 87 LNLVNGYVFKGKPMIIQFGRNPA 109
+ ++ + G+ + + + A
Sbjct: 286 VETLHDSEYHGRKLFVSRAQKKA 308
>gi|258574487|ref|XP_002541425.1| pre-mRNA branch site protein p14 [Uncinocarpus reesii 1704]
gi|237901691|gb|EEP76092.1| pre-mRNA branch site protein p14 [Uncinocarpus reesii 1704]
Length = 115
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL+ +V D+ F +FG FG I + G+ +G AFV + V A +
Sbjct: 14 ILFVKNLSYNVTADELFDLFGK-FGPIRQIRQGIA------ANSKGTAFVVYEDVHDAKQ 66
Query: 86 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
A + +NG+ F+ + +++ + + AK
Sbjct: 67 ACDKLNGFNFQNRYLVVLYHQPEKMAKS 94
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|149756182|ref|XP_001494921.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Equus
caballus]
Length = 412
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 234 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 289
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 290 LEQLNGFELAGRPMRV 305
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLQKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|359806644|ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycine max]
gi|255647802|gb|ACU24361.1| unknown [Glycine max]
Length = 232
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKN+ + V D+ + S +G I L V ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNINEKVKKDELKRSLYCLFSQYGRI------LDVIALKTPKLRGQAWVCFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKT 89
>gi|171696206|ref|XP_001913027.1| hypothetical protein [Podospora anserina S mat+]
gi|170948345|emb|CAP60509.1| unnamed protein product [Podospora anserina S mat+]
Length = 191
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +
Sbjct: 14 ALFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQ 66
Query: 86 ALNLVNGYVFKGKPMIIQF 104
A + +NGY F+ + +++ +
Sbjct: 67 ACDKLNGYNFQNRYLVVLY 85
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLQKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|346326972|gb|EGX96568.1| RNP domain-containing protein [Cordyceps militaris CM01]
Length = 609
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 17 NYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
N T+G S ++Y++NL DD +F ++ G ++ A+ ++ GR RG V
Sbjct: 438 NATSGTERSEIIYVRNLPWSTSNDDLIELFTTI-GKVEQAE----IQYEPSGRSRGSGVV 492
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQF 104
F + E A A++ GY + G+P+ + F
Sbjct: 493 KFDTAETAETAISKFQGYQYGGRPLNLSF 521
>gi|223649102|gb|ACN11309.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + D+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTM---KMRGQAFVVFKELAS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F KPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYNKPMRIQYAK 85
>gi|258568094|ref|XP_002584791.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906237|gb|EEP80638.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 420
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 4 LPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL 63
+PP + G ++++Y++NL +D +F ++ G ++ A+ ++
Sbjct: 301 IPPNPFTDFATY----GGERSALIYVRNLPWSTCNEDLVELFSTI-GKVERAE----IQY 351
Query: 64 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
Q GR RG V F ++E A A++ +GY + G+P+ + F
Sbjct: 352 EQNGRSRGTGVVQFDTIENAETAISKFSGYQYGGRPLGLTF 392
>gi|212545797|ref|XP_002153052.1| nucleic acid-binding protein [Talaromyces marneffei ATCC 18224]
gi|210064572|gb|EEA18667.1| nucleic acid-binding protein [Talaromyces marneffei ATCC 18224]
Length = 308
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
+P+ +YI NL D+ +D S FG ++ K+ +I G +G +VTF SVE
Sbjct: 107 DPSPTIYIGNLFFDITAEDLKSKMES-FGVVE--KAAIISDAR--GLSKGFGYVTFDSVE 161
Query: 82 LAHRALNLVNGYVFKGKPMIIQFG 105
A RA+ +N V++G+ +++QF
Sbjct: 162 AAQRAIEEMNQQVYEGRRVLVQFS 185
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LYI NLA D+ + +F S+ I+ + Q G RG A F
Sbjct: 197 GQPTRSLYIGNLAYDLTDRELNELFKSVRNVIEV----RVAVDRQTGNPRGFAHADFLDT 252
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNP 108
A AL +++ G+ + + F +NP
Sbjct: 253 PSAQAALEILSSKAPHGRRLKVDFSQNP 280
>gi|389744433|gb|EIM85616.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 280
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 14 MFKNYTAGNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMR 70
M + T P + LY+ NL + ++ F + +G + + V + +MR
Sbjct: 1 MASSSTVTQPNTTLYLNNLNDQIQKEELRGQLFALFTTYGKV------IDVVATKTQKMR 54
Query: 71 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
GQAF+ F + A AL +G +F KP+ +Q+ + + A
Sbjct: 55 GQAFLVFTDLAAATSALRATDGMLFYDKPLRVQYAKTKSYA 95
>gi|259484735|tpe|CBF81211.1| TPA: U1 small nuclear ribonucleoprotein A, putative
(AFU_orthologue; AFUA_6G06490) [Aspergillus nidulans
FGSC A4]
Length = 188
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 17 GLPNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTV---LDIVAMKTEKMRGQAHVVFKDI 73
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GKPM I + +
Sbjct: 74 QASTQAMRALQGFEFFGKPMKIVYAK 99
>gi|358054072|dbj|GAA99871.1| hypothetical protein E5Q_06574 [Mixia osmundae IAM 14324]
Length = 302
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+ +YI NL + V + +LF + L V + + RMRGQAFV F + A
Sbjct: 69 SETIYINNLNETVTIKNMKQTLRNLFRNFGTV---LDVVVHRNLRMRGQAFVAFEHKKSA 125
Query: 84 HRALNLVNGYVFKGKPMIIQFGRNPAAA 111
RA+N V + GKPM + + + A A
Sbjct: 126 WRAVNEVKDFPLYGKPMQLAYAKTQADA 153
>gi|440640405|gb|ELR10324.1| pre-mRNA branch site protein p14 [Geomyces destructans 20631-21]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV F V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVFEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F+ + +++
Sbjct: 68 CDKLNGFNFQSRYLVV 83
>gi|309266585|ref|XP_003086803.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 282
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 23 PASVLYIKNLAKDVVPDDF----FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P +YI +L + + D+ + +F S FG I L + + Q +MRGQ+FV F
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIF-SQFGQI------LDILVSQSLKMRGQSFVIFK 60
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V AL + G+ F GKPM IQ+ +
Sbjct: 61 EVSSTINALRSMQGFPFYGKPMHIQYAKT 89
>gi|73962357|ref|XP_537365.2| PREDICTED: probable RNA-binding protein 23 isoform 1 [Canis lupus
familiaris]
Length = 445
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 266 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 321
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 322 LEQLNGFELAGRPMRV 337
>gi|73962355|ref|XP_848788.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Canis lupus
familiaris]
Length = 429
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 250 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 305
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 306 LEQLNGFELAGRPMRV 321
>gi|410961880|ref|XP_003987506.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Felis catus]
Length = 445
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 266 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 321
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 322 LEQLNGFELAGRPMRV 337
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ FG+I +AK +I L GR +G FV F S E A +A
Sbjct: 288 LYVKNL-DDSIDDEGLREAFKQFGNITSAK--VITDL--NGRSKGFGFVCFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG +F GKP+ +
Sbjct: 343 VTEMNGRIFGGKPLYV 358
>gi|197102126|ref|NP_001124751.1| probable RNA-binding protein 23 [Pongo abelii]
gi|55725769|emb|CAH89665.1| hypothetical protein [Pongo abelii]
Length = 423
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 249 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 304
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 305 LEQLNGFELAGRPMRV 320
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDAIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M Q G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGPT------LSVKVMTDQSGKSKGFGFVSFEKHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|367052823|ref|XP_003656790.1| hypothetical protein THITE_2171338 [Thielavia terrestris NRRL 8126]
gi|347004055|gb|AEO70454.1| hypothetical protein THITE_2171338 [Thielavia terrestris NRRL 8126]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|342877370|gb|EGU78838.1| hypothetical protein FOXB_10660 [Fusarium oxysporum Fo5176]
Length = 177
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 77 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVADAKQA 129
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG+ F+ + +++ + + AK
Sbjct: 130 CDKLNGFNFQNRYLVVLYHQPDKMAK 155
>gi|340923936|gb|EGS18839.1| hypothetical protein CTHT_0054490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKTA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|301781270|ref|XP_002926046.1| PREDICTED: probable RNA-binding protein 23-like isoform 2
[Ailuropoda melanoleuca]
Length = 430
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 251 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 306
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 307 LEQLNGFELAGRPMRV 322
>gi|410961882|ref|XP_003987507.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Felis catus]
Length = 429
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 250 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 305
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 306 LEQLNGFELAGRPMRV 321
>gi|397473313|ref|XP_003808159.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Pan paniscus]
Length = 442
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 306
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPM 334
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + AGN ++IKNL K + + F SLFG+I + K V + +EG +G
Sbjct: 112 PAMRRSGAGN----IFIKNLDKVIDNKSIYDTF-SLFGNILSCK----VAIDEEGSSKGY 162
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A A+ VNG + GK + +
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL + V + F S FG+I +AK V + GR +G FV F E A A
Sbjct: 319 LYVKNLDESVDDEALKKQFES-FGNITSAK----VMTDENGRSKGFGFVCFEKPEEATTA 373
Query: 87 LNLVNGYVFKGKPMII 102
+ +N + KP+ +
Sbjct: 374 VTEMNSKMVCSKPLYV 389
>gi|164427672|ref|XP_964127.2| hypothetical protein NCU02837 [Neurospora crassa OR74A]
gi|157071838|gb|EAA34891.2| conserved hypothetical protein [Neurospora crassa OR74A]
gi|336463638|gb|EGO51878.1| hypothetical protein NEUTE1DRAFT_89652 [Neurospora tetrasperma FGSC
2508]
gi|350294965|gb|EGZ76029.1| hypothetical protein NEUTE2DRAFT_97428 [Neurospora tetrasperma FGSC
2509]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D V D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 46 LYIKNL-DDTVGDENLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPE-AIKA 98
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG V KP+ + R
Sbjct: 99 VTKMNGCVMSSKPLYVALAR 118
>gi|402086724|gb|EJT81622.1| pre-mRNA branch site protein p14 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKTA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|301781268|ref|XP_002926045.1| PREDICTED: probable RNA-binding protein 23-like isoform 1
[Ailuropoda melanoleuca]
Length = 446
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 267 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 322
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 323 LEQLNGFELAGRPMRV 338
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D V D+ S FG+I + K V L +G +G FV F + E A RA
Sbjct: 324 LYLKNL-DDSVNDEKLXELFSEFGTITSCK----VMLDPQGLSKGSGFVAFLTPEEATRA 378
Query: 87 LNLVNGYVFKGKPMII 102
LN++NG + KP+ +
Sbjct: 379 LNVMNGKMIGRKPLYV 394
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 16 KNYTAGNPA-SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAF 74
+N G+P + +Y+KNL++ DD +FG +GSI +A +V G + F
Sbjct: 208 RNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGK-YGSITSA----VVMRDASGMSKCFGF 262
Query: 75 VTFPSVELAHRALNLVNGYVF 95
V F S + A A+ +NG F
Sbjct: 263 VNFQSSDSAAAAVEHLNGATF 283
>gi|440893400|gb|ELR46188.1| U2 small nuclear ribonucleoprotein B'', partial [Bos grunniens
mutus]
Length = 233
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 13 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 69
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 70 STNALRQLQGFPFYGKPMRIQYAK 93
>gi|66806007|ref|XP_636725.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
gi|74996697|sp|Q54J05.1|RU2B_DICDI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|60465122|gb|EAL63221.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
Length = 241
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P LY+ NL + + LF +K G I++++ + +MRGQAF+ F +
Sbjct: 10 PNQTLYVNNLYEKISKKKLIEQLLLLF-----SKYGPILEIVGSKSLKMRGQAFIVFKDI 64
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL +NG+ F +PM IQ+ ++ + A
Sbjct: 65 TSASNALREMNGFNFLDRPMKIQYCKSKSDA 95
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + AGN ++IKNL K + + F SLFG+I + K V + +EG +G
Sbjct: 112 PAMRRSGAGN----IFIKNLDKVIDNKSIYDTF-SLFGNILSCK----VAIDEEGSSKGY 162
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A A+ VNG + GK + +
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL + V + F S FG+I +AK V + GR +G FV F E A A
Sbjct: 319 LYVKNLDESVDDEALKKQFES-FGNITSAK----VMTDENGRSKGFGFVCFEKPEEATTA 373
Query: 87 LNLVNGYVFKGKPMII 102
++ +N + KP+ +
Sbjct: 374 VSEMNSKMVCSKPLYV 389
>gi|63592914|ref|XP_356179.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1 [Mus
musculus]
Length = 281
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 23 PASVLYIKNLAKDVVPDDF----FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P +YI +L + + D+ + +F S FG I L + + Q +MRGQ+FV F
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIF-SQFGQI------LDILVSQSLKMRGQSFVIFK 60
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V AL + G+ F GKPM IQ+ +
Sbjct: 61 EVSSTINALRSMQGFPFYGKPMHIQYAKT 89
>gi|7022544|dbj|BAA91638.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 272
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 273 GFITFSDSECARRALEQLNGFELAGRPM 300
>gi|354542538|ref|NP_001238897.1| U2 small nuclear ribonucleoprotein B'' [Canis lupus familiaris]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|4507123|ref|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|38149981|ref|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|332238115|ref|XP_003268248.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Nomascus leucogenys]
gi|332238117|ref|XP_003268249.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Nomascus leucogenys]
gi|397478615|ref|XP_003810638.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Pan
paniscus]
gi|397478617|ref|XP_003810639.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pan
paniscus]
gi|426391004|ref|XP_004061878.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Gorilla gorilla gorilla]
gi|426391006|ref|XP_004061879.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Gorilla gorilla gorilla]
gi|134095|sp|P08579.1|RU2B_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|340105|gb|AAA36796.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|17390031|gb|AAH18022.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|22477822|gb|AAH36737.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|119630689|gb|EAX10284.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|119630690|gb|EAX10285.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|123979922|gb|ABM81790.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|189066590|dbj|BAG35840.1| unnamed protein product [Homo sapiens]
gi|410226668|gb|JAA10553.1| small nuclear ribonucleoprotein polypeptide B [Pan troglodytes]
gi|410226670|gb|JAA10554.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410263358|gb|JAA19645.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410342435|gb|JAA40164.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|403283665|ref|XP_003933231.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Saimiri
boliviensis boliviensis]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|383419607|gb|AFH33017.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 265 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 320
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 321 LEQLNGFELAGRPMRV 336
>gi|301787297|ref|XP_002929064.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Ailuropoda
melanoleuca]
gi|410954385|ref|XP_003983845.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Felis
catus]
gi|410954387|ref|XP_003983846.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Felis
catus]
gi|281346668|gb|EFB22252.1| hypothetical protein PANDA_019153 [Ailuropoda melanoleuca]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|261858408|dbj|BAI45726.1| RNA binding motif protein 23 [synthetic construct]
Length = 406
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 272
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 273 GFITFSDSECARRALEQLNGFELAGRPM 300
>gi|261191117|ref|XP_002621967.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591011|gb|EEQ73592.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239613076|gb|EEQ90063.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 253
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y++NL + + + +F ++ G I+ ++ + + +GQAF+ F +V
Sbjct: 13 PNSTVYVRNLEERIKVEPLKEALAEIF-----SEYGNIIDIVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA+ +NG+ KPM++ + R + A
Sbjct: 68 DSATRAIEEINGFELFEKPMVLDYARTRSDA 98
>gi|126303676|ref|XP_001374230.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like isoform 1
[Monodelphis domestica]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|380096344|emb|CCC06392.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|355784710|gb|EHH65561.1| U2 small nuclear ribonucleoprotein B'' [Macaca fascicularis]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|297706381|ref|XP_002830019.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pongo
abelii]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|55732648|emb|CAH93023.1| hypothetical protein [Pongo abelii]
Length = 225
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|67515655|ref|XP_657713.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|40746131|gb|EAA65287.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|259489698|tpe|CBF90183.1| TPA: U1 small nuclear ribonucleoprotein, putative (AFU_orthologue;
AFUA_5G11930) [Aspergillus nidulans FGSC A4]
Length = 252
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y++NL + + D +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 12 PNPTVYVRNLEERIKLDQLKEALSEIF-----SEYGTILEIVAKRNLKAKGQAFIVFDNV 66
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA++ VNG+ KPM++ + + + A
Sbjct: 67 DSATRAIDEVNGFDLFDKPMVLDYAKTRSDA 97
>gi|452840644|gb|EME42582.1| hypothetical protein DOTSEDRAFT_73428 [Dothistroma septosporum
NZE10]
Length = 114
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 14 MFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQA 73
M +N A L++KNL+ +V ++ F +FG FGSI + G+ +G A
Sbjct: 1 MSRNKLAPEVNRALFVKNLSYNVTTEELFDLFGK-FGSIRQIRQGIA------SNTKGTA 53
Query: 74 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
FV + V A A + +NG+ F+ + +++ + + AK
Sbjct: 54 FVVYEDVMDAKSACDKLNGFNFQNRYLVVLYHQPEKMAKSQ 94
>gi|384947948|gb|AFI37579.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 249 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 304
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 305 LEQLNGFELAGRPMRV 320
>gi|359718900|ref|NP_001240769.1| U2 small nuclear ribonucleoprotein B'' [Equus caballus]
gi|328908863|gb|AEB61099.1| u2 small nuclear ribonucleoprotein B''-like protein [Equus
caballus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|123994687|gb|ABM84945.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|261861662|dbj|BAI47353.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|114681082|ref|XP_514523.2| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 5 [Pan
troglodytes]
gi|114681084|ref|XP_001137830.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 4 [Pan
troglodytes]
gi|296200238|ref|XP_002747509.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Callithrix jacchus]
gi|296200240|ref|XP_002747510.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 3
[Callithrix jacchus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|116181616|ref|XP_001220657.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88185733|gb|EAQ93201.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|444729539|gb|ELW69952.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|417397429|gb|JAA45748.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|395507829|ref|XP_003758221.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Sarcophilus
harrisii]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|344279401|ref|XP_003411476.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Loxodonta
africana]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRREFSAFGTIKSAKV-----MMDDGRSKGFGFVYFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 343 VTDMNGRIVGTKPLYV 358
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR---GQAFVTFPSVELA 83
LY+ +L DV F F S G+I L +++ + R G A+V F ++ A
Sbjct: 4 LYVGDLHSDVTEAMLFEKF-STVGAI------LSIRVCRHVITRSSLGYAYVNFQNIADA 56
Query: 84 HRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
RAL+ +N + KG PM I + R+P+ K
Sbjct: 57 ERALDTMNFDILKGHPMRIMWSQRDPSLRK 86
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + + + F S FG+I + K V + G +G
Sbjct: 82 PSLRKSGVGN----VFIKNLDRSIDNKAMYDTF-SAFGNILSCK----VAQDETGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQ--FGRN 107
FV F + + A +++ VNG + GK + + GRN
Sbjct: 133 GFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRN 169
>gi|119586626|gb|EAW66222.1| RNA binding motif protein 23, isoform CRA_a [Homo sapiens]
Length = 483
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 295 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 350
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 351 GFITFSDSECARRALEQLNGFELAGRPM 378
>gi|119586630|gb|EAW66226.1| RNA binding motif protein 23, isoform CRA_e [Homo sapiens]
Length = 449
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 261 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 316
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 317 GFITFSDSECARRALEQLNGFELAGRPM 344
>gi|116734698|ref|NP_001070820.1| probable RNA-binding protein 23 isoform 3 [Homo sapiens]
gi|119586628|gb|EAW66224.1| RNA binding motif protein 23, isoform CRA_c [Homo sapiens]
Length = 405
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 272
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 273 GFITFSDSECARRALEQLNGFELAGRPM 300
>gi|116734696|ref|NP_001070819.1| probable RNA-binding protein 23 isoform 1 [Homo sapiens]
gi|34925229|sp|Q86U06.1|RBM23_HUMAN RecName: Full=Probable RNA-binding protein 23; AltName:
Full=RNA-binding motif protein 23; AltName:
Full=RNA-binding region-containing protein 4; AltName:
Full=Splicing factor SF2
gi|28071058|emb|CAD61910.1| unnamed protein product [Homo sapiens]
gi|119586629|gb|EAW66225.1| RNA binding motif protein 23, isoform CRA_d [Homo sapiens]
Length = 439
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 306
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPM 334
>gi|12803481|gb|AAH02566.1| RNA binding motif protein 23 [Homo sapiens]
gi|189055004|dbj|BAG37988.1| unnamed protein product [Homo sapiens]
gi|312151810|gb|ADQ32417.1| RNA binding motif protein 23 [synthetic construct]
Length = 424
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 291 GFITFSDSECARRALEQLNGFELAGRPM 318
>gi|317037413|ref|XP_001399113.2| RNA binding domain protein [Aspergillus niger CBS 513.88]
Length = 196
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
G P LY NL + D ++ S +G++ L V M+ +MRGQA + F
Sbjct: 21 GLPNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTV------LDVVAMKTQKMRGQAHIVF 74
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V+ + +A+ + G+ F GK M I + + P+
Sbjct: 75 KDVQASTQAMRALQGFEFFGKQMKIVYAKGPS 106
>gi|301781272|ref|XP_002926047.1| PREDICTED: probable RNA-binding protein 23-like isoform 3
[Ailuropoda melanoleuca]
Length = 412
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 233 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 288
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 289 LEQLNGFELAGRPMRV 304
>gi|149640848|ref|XP_001514376.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Ornithorhynchus anatinus]
gi|345329106|ref|XP_003431335.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Ornithorhynchus anatinus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|119586634|gb|EAW66230.1| RNA binding motif protein 23, isoform CRA_h [Homo sapiens]
Length = 467
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 279 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 334
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 335 GFITFSDSECARRALEQLNGFELAGRPM 362
>gi|50738734|ref|XP_419331.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Gallus
gallus]
gi|326914835|ref|XP_003203728.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Meleagris
gallopavo]
Length = 226
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|386781069|ref|NP_001247823.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|402883260|ref|XP_003905142.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Papio
anubis]
gi|402883262|ref|XP_003905143.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Papio
anubis]
gi|402883264|ref|XP_003905144.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 3 [Papio
anubis]
gi|355563375|gb|EHH19937.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|380787253|gb|AFE65502.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|383414075|gb|AFH30251.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|384942630|gb|AFI34920.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|300796380|ref|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos taurus]
gi|426240672|ref|XP_004014218.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Ovis
aries]
gi|296481542|tpg|DAA23657.1| TPA: small nuclear ribonucleoprotein polypeptide B'' [Bos taurus]
Length = 218
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|291389004|ref|XP_002711008.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B''
[Oryctolagus cuniculus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|148689095|gb|EDL21042.1| mCG15722 [Mus musculus]
Length = 281
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 23 PASVLYIKNLAKDVVPDDF----FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P +YI +L + + D+ + +F S FG I L + + Q +MRGQ+FV F
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIF-SQFGQI------LDILVSQSLKMRGQSFVIFK 60
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
V AL + G+ F GKPM IQ+ +
Sbjct: 61 EVSSTINALRSMQGFPFYGKPMHIQYAKT 89
>gi|410961884|ref|XP_003987508.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Felis catus]
Length = 411
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 232 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 287
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 288 LEQLNGFELAGRPMRV 303
>gi|345804022|ref|XP_003435135.1| PREDICTED: probable RNA-binding protein 23 [Canis lupus familiaris]
Length = 411
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 232 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 287
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 288 LEQLNGFELAGRPMRV 303
>gi|157819927|ref|NP_001102062.1| U2 small nuclear ribonucleoprotein B'' [Rattus norvegicus]
gi|354492046|ref|XP_003508163.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cricetulus
griseus]
gi|149041257|gb|EDL95190.1| rCG27500, isoform CRA_c [Rattus norvegicus]
gi|197245976|gb|AAI68760.1| Small nuclear ribonucleoprotein polypeptide B'' [Rattus norvegicus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus musculus]
gi|52783420|sp|Q9CQI7.1|RU2B_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|12847289|dbj|BAB27510.1| unnamed protein product [Mus musculus]
gi|12851400|dbj|BAB29026.1| unnamed protein product [Mus musculus]
gi|20072417|gb|AAH26794.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gi|126035620|gb|ABN72533.1| U2 small nuclear ribonucleoprotein B [Mus spretus]
gi|148696479|gb|EDL28426.1| mCG19497, isoform CRA_c [Mus musculus]
Length = 225
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 190 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 245
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 246 LEQLNGFELAGRPMRV 261
>gi|395858003|ref|XP_003801365.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Otolemur
garnettii]
Length = 225
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|320167853|gb|EFW44752.1| SNF [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P+ LY+ NL + + ++ ++F + +K + +MRGQAF+ F +
Sbjct: 21 PSQTLYVNNLNEKLKKEELRAALYTIFTQFGPVLDIVALKTL---KMRGQAFIVFHDITS 77
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ AL + G+ F GKPM I F ++ + A
Sbjct: 78 SANALRSLQGFSFYGKPMRITFAKSRSYA 106
>gi|116175273|ref|NP_001070696.1| uncharacterized protein LOC768116 [Sus scrofa]
gi|426240670|ref|XP_004014217.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Ovis
aries]
gi|115371759|gb|ABI96204.1| RU2B [Sus scrofa]
Length = 225
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+A +V D+F +F + FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 217 VYVKNIANEVTDDEFRDLFAA-FGDVTSSS----LARDQEGKSRGFGFVNFTTHEAAAKA 271
Query: 87 LNLVNGYVFKGKPMII 102
+ +N F+G+ + +
Sbjct: 272 VEDLNNKDFRGQDLYV 287
>gi|397473315|ref|XP_003808160.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Pan paniscus]
Length = 408
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 272
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 273 GFITFSDSECARRALEQLNGFELAGRPM 300
>gi|116734694|ref|NP_060577.3| probable RNA-binding protein 23 isoform 2 [Homo sapiens]
gi|18848317|gb|AAH24208.1| RNA binding motif protein 23 [Homo sapiens]
gi|119586627|gb|EAW66223.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
gi|119586633|gb|EAW66229.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
Length = 423
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 291 GFITFSDSECARRALEQLNGFELAGRPM 318
>gi|426246411|ref|XP_004016988.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Ovis aries]
Length = 225
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|351695324|gb|EHA98242.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 224
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|358373502|dbj|GAA90100.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 196
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
G P LY NL + D ++ S +G++ L V M+ +MRGQA + F
Sbjct: 21 GLPNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTV------LDVVAMKTQKMRGQAHIVF 74
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V+ + +A+ + G+ F GK M I + + P+
Sbjct: 75 KDVQASTQAMRALQGFEFFGKQMKIVYAKGPS 106
>gi|397473311|ref|XP_003808158.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Pan paniscus]
Length = 426
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 291 GFITFSDSECARRALEQLNGFELAGRPM 318
>gi|357491327|ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355517286|gb|AES98909.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|388501104|gb|AFK38618.1| unknown [Medicago truncatula]
Length = 233
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + + D+ + S +G I L + ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAK 88
>gi|367019080|ref|XP_003658825.1| hypothetical protein MYCTH_105822 [Myceliophthora thermophila ATCC
42464]
gi|347006092|gb|AEO53580.1| hypothetical protein MYCTH_105822 [Myceliophthora thermophila ATCC
42464]
Length = 115
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVLDAKQA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 603 LYVKNL-DDTIDDERLRREFSAFGTIKSAKV-----MMDDGRSKGFGFVYFSSPEEATKA 656
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 657 VTDMNGRIVGTKPLYVTLAQ 676
>gi|449495575|ref|XP_004176204.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 225
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|119174440|ref|XP_001239581.1| hypothetical protein CIMG_09202 [Coccidioides immitis RS]
gi|303314307|ref|XP_003067162.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106830|gb|EER25017.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037431|gb|EFW19368.1| U1 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869777|gb|EAS28302.2| U1 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 251
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y++NL + + + +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 13 PNSTVYVRNLEERIKVEQLKEALSEIF-----SEYGSILEIVAKTNVKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA+ +NG+ KPM++ + + + A
Sbjct: 68 DSATRAIEEINGFELFEKPMVLDYAKTRSDA 98
>gi|449280001|gb|EMC87413.1| U2 small nuclear ribonucleoprotein B'' [Columba livia]
Length = 226
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|58331942|ref|NP_001011120.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
gi|54038268|gb|AAH84519.1| hypothetical LOC496533 [Xenopus (Silurana) tropicalis]
gi|89268683|emb|CAJ82680.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
Length = 223
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL V + +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELSS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAK 85
>gi|388501866|gb|AFK38999.1| unknown [Medicago truncatula]
Length = 234
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + + D+ + S +G I L + ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAK 88
>gi|451848678|gb|EMD61983.1| hypothetical protein COCSADRAFT_192065 [Cochliobolus sativus
ND90Pr]
Length = 178
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVT 76
+ G P LY++NL + DD LF + G+I+ + ++ +MRGQA V
Sbjct: 14 SEGIPNRTLYVRNLPDKLQKDDLKRSLYMLFATY-----GVILDIVALKTMKMRGQAHVV 68
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
F ++ + +A+ + G+ F GK M I + +
Sbjct: 69 FRDIDSSTQAMRALQGFTFFGKDMQIAYAKT 99
>gi|134084710|emb|CAK43367.1| unnamed protein product [Aspergillus niger]
gi|350630864|gb|EHA19236.1| hypothetical protein ASPNIDRAFT_126281 [Aspergillus niger ATCC
1015]
Length = 177
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 22 NPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+P LY NL + D ++ S +G++ L V M+ +MRGQA + F
Sbjct: 3 DPNCSLYCTNLPDKLRKHDLRLSLYMLFSTYGTV------LDVVAMKTQKMRGQAHIVFK 56
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
V+ + +A+ + G+ F GK M I + + P+
Sbjct: 57 DVQASTQAMRALQGFEFFGKQMKIVYAKGPS 87
>gi|348581624|ref|XP_003476577.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cavia
porcellus]
Length = 224
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|217069866|gb|ACJ83293.1| unknown [Medicago truncatula]
Length = 211
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + + D+ + S +G I L + ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAKT 89
>gi|171913967|ref|ZP_02929437.1| RNP-1 like RNA-binding protein [Verrucomicrobium spinosum DSM 4136]
Length = 238
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ NL+ D D F LF K+ +V + R +G AFVT SV+ A +A
Sbjct: 129 LYVGNLSYDASESDLF----ELFNGSGRVKNAEVVVNNRTQRSKGFAFVTMMSVDEAKKA 184
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F G+P+++
Sbjct: 185 VDDLNGKDFMGRPLVV 200
>gi|226293434|gb|EEH48854.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb18]
Length = 478
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G +++++++NL +D +F ++ G ++ A+ ++ GR RG V F
Sbjct: 371 SGGERSAIIFVRNLPWSTCNEDLVDLFSTI-GKVERAE----IQYEPNGRSRGTGVVEFD 425
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
SVE A A+N GY + G+P+ + F
Sbjct: 426 SVENAETAINKFTGYQYGGRPLGLTF 451
>gi|429854655|gb|ELA29652.1| pre-mRNA branch site protein p14 [Colletotrichum gloeosporioides
Nara gc5]
Length = 109
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
A L++KNL+ +V P++ F +FG FG I + G+ +G AFV +
Sbjct: 2 ADCSCRALFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SGTKGTAFVVYED 54
Query: 80 VELAHRALNLVNGYVFKGKPMII 102
V A +A + +NG+ F+ + +I+
Sbjct: 55 VMDAKQACDKLNGFNFQNRYLIV 77
>gi|240275413|gb|EER38927.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325091251|gb|EGC44561.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus H88]
Length = 253
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPS 79
P S +Y++NL + + + +F ++ G I+ ++ + + +GQAFV F +
Sbjct: 12 TPNSTIYVRNLEERIKIESLKEALTEIF-----SEYGNIIDIVAKTNLKAKGQAFVVFDN 66
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
V+ A RA+ +NG+ KPM++ + + + A
Sbjct: 67 VDSATRAIEEINGFELFEKPMVLDYAKTRSDA 98
>gi|147902216|ref|NP_001085460.1| MGC80122 protein [Xenopus laevis]
gi|49257361|gb|AAH72799.1| MGC80122 protein [Xenopus laevis]
Length = 223
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL V + +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELSS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A AL + G+ F KPM IQ+ ++ +
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAKSDS 88
>gi|119630691|gb|EAX10286.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_b
[Homo sapiens]
Length = 242
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|348538124|ref|XP_003456542.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Oreochromis
niloticus]
Length = 218
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI N+ + ++ + S FG + + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGQV------IDIVAMKTMKMRGQAFVIFKE 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LAAATNALRQLQGFPFYNKPMRIQYAKT 86
>gi|156045603|ref|XP_001589357.1| hypothetical protein SS1G_09992 [Sclerotinia sclerotiorum 1980]
gi|154694385|gb|EDN94123.1| hypothetical protein SS1G_09992 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 194
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG+I + G+ +G AFV + V + A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGAIRQIRQGIATN------TKGTAFVVYEDVTDSKTA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +++ +
Sbjct: 68 CDKLNGFNFQNRYLVVLY 85
>gi|431894149|gb|ELK03949.1| U2 small nuclear ribonucleoprotein B'' [Pteropus alecto]
Length = 291
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 67 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 123
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 124 STNALRQLQGFPFYGKPMRIQYAK 147
>gi|70997421|ref|XP_753458.1| U1 small nuclear ribonucleoprotein [Aspergillus fumigatus Af293]
gi|66851094|gb|EAL91420.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
Af293]
gi|159126813|gb|EDP51929.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
A1163]
Length = 255
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 9 ILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGR 68
+ S + TA + ++NL + + D +F ++ G IV+++ +
Sbjct: 3 VSSSACYNERTAHLTSLTKQVRNLEERIKVDQLKVALEEIF-----SEYGNIVEIVAKTN 57
Query: 69 MR--GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
++ GQAF+ F +VE A RA+ VNG+ KPM++ + + + A
Sbjct: 58 LKAKGQAFIVFDNVESATRAIEEVNGFELFDKPMVLDYAKTKSDA 102
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI A+ ++++GR +G FV F S E A +A
Sbjct: 292 LYIKNL-DDTIDDEKLRKEFSPFGSITRAEV-----MLEDGRSKGFGFVCFSSPEEATKA 345
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 346 VTEMNGRIVGSKPLYVALAQRKEERK 371
>gi|347829902|emb|CCD45599.1| hypothetical protein [Botryotinia fuckeliana]
Length = 201
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 23 PASVLYIKNL-AKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P +YI NL + + DD + S +G + L V ++ +MRGQA V +
Sbjct: 16 PNQTIYITNLPSSKIQKDDLRRELYTLCSTYGPV------LDVIALKSMKMRGQAHVVYR 69
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++ A +A+ + G+ F G+ M IQ+ ++
Sbjct: 70 DIQTATQAMRALQGFEFLGREMNIQYAKS 98
>gi|340521610|gb|EGR51844.1| predicted protein [Trichoderma reesei QM6a]
Length = 298
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y+ NL + V P+ ++F G +V ++ + + +GQAFV F
Sbjct: 62 PISTVYVHNLEERVKPEVLTDALKTIFSEF-----GNVVDIVAKRNLKAKGQAFVVFDEP 116
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
AH+A+ V G+ GKPM + R
Sbjct: 117 SAAHKAIEEVEGFELFGKPMRVAMAR 142
>gi|154309565|ref|XP_001554116.1| hypothetical protein BC1G_07253 [Botryotinia fuckeliana B05.10]
gi|347838315|emb|CCD52887.1| similar to pre-mRNA branch site protein p14 [Botryotinia
fuckeliana]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG+I + G+ +G AFV + V + A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGAIRQIRQGIATN------TKGTAFVVYEDVTDSKTA 67
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +++ +
Sbjct: 68 CDKLNGFNFQNRYLVVLY 85
>gi|156102613|ref|XP_001616999.1| U1A small nuclear ribonucleoprotein [Plasmodium vivax Sal-1]
gi|148805873|gb|EDL47272.1| U1A small nuclear ribonucleoprotein, putative [Plasmodium vivax]
Length = 504
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P LY+KNL + D+ LF + G+I L M+ +GQA+V + +V
Sbjct: 225 PNETLYVKNLNDRIKIDEMKKNLKDLF-----KQYGVIEDLVVMKSFWRKGQAWVVYDNV 279
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
E + +ALN + G+V GK M I + N +
Sbjct: 280 ESSTKALNALQGFVLFGKIMQINYSHNKS 308
>gi|291566709|dbj|BAI88981.1| RNA-binding protein [Arthrospira platensis NIES-39]
Length = 93
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ NL+ DV PDD F +G++ K +I + GR RG FV S + A
Sbjct: 3 IYVGNLSYDVTPDDLSAAFAE-YGTV---KRSMIPTDRETGRSRGFGFVEMSSEDEEKVA 58
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+N ++G +KG+ + + R
Sbjct: 59 INALDGAEWKGRSLKVNKAR 78
>gi|443326633|ref|ZP_21055280.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
gi|442793754|gb|ELS03194.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
Length = 150
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ NL K+ + D ++F D S ++K + G+ RG AFVT P+ E+A +
Sbjct: 5 LYVGNLPKEAIEKDALV---AMFADDDQQVSTKLIKDRKTGKCRGFAFVTVPTDEMADQF 61
Query: 87 LNLVNGYVFKGKPMIIQ 103
+ NG F P+ I+
Sbjct: 62 IEKYNGQSFMESPLKIE 78
>gi|367052635|ref|XP_003656696.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
gi|347003961|gb|AEO70360.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
Length = 203
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 23 PASVLYIKNL-AKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P LY+ NL + + +D ++ S +GS+ L V ++ +MRGQA + +
Sbjct: 20 PNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSV------LDVVALKTMKMRGQAHIVYK 73
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++ A +A+ ++G+ F G+PM I + ++
Sbjct: 74 DIQTATQAMRSLDGFEFLGRPMKISYAKS 102
>gi|261326987|emb|CBH09962.1| RNA-binding protein RBP6, putative [Trypanosoma brucei gambiense
DAL972]
Length = 241
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA DV D +F S FG +D A+ I+ Q +G FV F E A A
Sbjct: 143 LIVNYLAPDVTSTDLHELF-SRFGELDGAR---IIYDKQTNMSKGYGFVYFCHAEDAKEA 198
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+ ++GY F GK + + + NP PS
Sbjct: 199 VERMSGYEFHGKWLKVGYSTNPLNIVPS 226
>gi|72386923|ref|XP_843886.1| RNA-binding protein RBP6 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359014|gb|AAX79463.1| RNA-binding protein RBP6, putative [Trypanosoma brucei]
gi|70800418|gb|AAZ10327.1| RNA-binding protein RBP6, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 239
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA DV D +F S FG +D A+ I+ Q +G FV F E A A
Sbjct: 141 LIVNYLAPDVTSTDLHELF-SRFGELDGAR---IIYDKQTNMSKGYGFVYFCHAEDAKEA 196
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
+ ++GY F GK + + + NP PS
Sbjct: 197 VERMSGYEFHGKWLKVGYSTNPLNIVPS 224
>gi|380495949|emb|CCF32001.1| RNP domain-containing protein [Colletotrichum higginsianum]
Length = 187
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 15 FKNY-TAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
F +Y TAG S +Y++NL +D +F + G ++ A+ ++ GR RG
Sbjct: 74 FTDYATAGTDRSETIYVRNLPWSTSNEDLVELF-TTIGKVEQAE----IQYEPSGRSRGT 128
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V F S E A A+ GY + G+P+ + F R
Sbjct: 129 GVVRFDSAETAETAIAKFQGYQYGGRPLGLSFVR 162
>gi|324523388|gb|ADY48239.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 228
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL + ++ ++F L K + +MRGQA V F +
Sbjct: 6 PNHTIYINNLNEKTKKEELRKALYTIFSEFGQVIDVLAFKTL---KMRGQAHVIFKEMSS 62
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQF R
Sbjct: 63 ASNALRAMQGFPFYDKPMRIQFAR 86
>gi|317029025|ref|XP_003188692.1| RNP domain protein [Aspergillus niger CBS 513.88]
Length = 428
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G+ ++V+Y++NL +D +F ++ G +D A+ ++ GR RG V F
Sbjct: 319 SGGDKSAVIYVRNLPWSTCNEDLVDLFSTI-GKVDRAE----IQYEPNGRSRGTGVVQFD 373
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
S + A A+ GY + G+P+ I F
Sbjct: 374 SADTAETAIAKFTGYQYGGRPLGITF 399
>gi|225561807|gb|EEH10087.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus G186AR]
Length = 249
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y++NL + + + +F ++ G I+ ++ + + +GQAFV F +V
Sbjct: 13 PNSTIYVRNLEERIKIESLKEALTEIF-----SEYGNIIDIVAKTNLKAKGQAFVVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA+ +NG+ KPM++ + + + A
Sbjct: 68 DSATRAIEEINGFELFEKPMVLDYAKTRSDA 98
>gi|408390063|gb|EKJ69476.1| hypothetical protein FPSE_10356 [Fusarium pseudograminearum CS3096]
Length = 564
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 5 PPEEILSLPMFKNY-TAG-NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
PP + F +Y TAG + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 442 PPASSVPPNPFTDYATAGSDRGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQ 496
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 497 YEPSGRSRGTGVVRFDSAETAETAITKFQGYQYGGRPLNLSF 538
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE-GRMRGQAFVTFPSVELAHR 85
LYIKNL + + + F S FGSI VK+MQE GR +G + F S E A +
Sbjct: 295 LYIKNLDETIDDEKLRREFSS-FGSISR------VKVMQEEGRSKGFGLICFSSPEEATK 347
Query: 86 ALNLVNGYVFKGKPMIIQFGRNP 108
A+ +NG + KP+ I + P
Sbjct: 348 AMTEMNGRILGSKPLNIALAQKP 370
>gi|326481613|gb|EGE05623.1| U1 small nuclear ribonucleoprotein [Trichophyton equinum CBS
127.97]
Length = 256
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y++NL + + + +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 13 PNPTVYVRNLEERIKVEQLKEALTEIF-----SEYGSILEIVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA++ VNG+ KPM++++ + + A
Sbjct: 68 DSATRAIDEVNGFELFEKPMVLEYAKTKSDA 98
>gi|340520969|gb|EGR51204.1| predicted protein [Trichoderma reesei QM6a]
Length = 172
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 23 PASVLYIKNL-AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
P +YI NL + + D LF + + +K M+ MRGQA + F ++
Sbjct: 25 PNQTIYITNLPSAKIQKQDLRTALYMLFSTFGPVLDIVALKTME---MRGQAHIVFRDIQ 81
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRN 107
A +A+ ++G F G+PM IQ+ ++
Sbjct: 82 AATQAMRTMDGQTFLGRPMKIQYAKS 107
>gi|149263421|ref|XP_995150.2| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + Q +MRGQ FV F V +
Sbjct: 14 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSQSLKMRGQVFVIFKEVTI 67
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 68 ATNALWSMLGFPFYDKPMRIQYTKT 92
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNLA+ DD FG +G I +A +V EG+ +G FV F + + A RA
Sbjct: 217 VYVKNLAESTTDDDLKNAFGE-YGKITSA----VVMKDGEGKSKGFGFVNFENADDAARA 271
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F K +
Sbjct: 272 VESLNGHKFDDKEWYV 287
>gi|358060915|dbj|GAA93431.1| hypothetical protein E5Q_00072 [Mixia osmundae IAM 14324]
Length = 298
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLF---GSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + LY++ L + +D + SLF G + L V ++ +MRGQAFV + S
Sbjct: 13 PNTTLYVQGLDASIKKEDLKRLLHSLFSVHGHL------LDVVALKGPKMRGQAFVVYES 66
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A A +G +F G+PM I + + + A
Sbjct: 67 LTSATTARRREDGAIFCGQPMRISYAKTKSHA 98
>gi|325089108|gb|EGC42418.1| RNP domain-containing protein [Ajellomyces capsulatus H88]
Length = 471
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
G +PP + G ++ +Y++NL +D +F ++ G ++ A+ +
Sbjct: 351 GSVPPNPFTDFAT----SGGERSATIYVRNLPWSTCNEDLVDLFSTI-GKVEKAE----I 401
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
+ GR RG V F + E A A+N GY + G+P+ + F
Sbjct: 402 QYEPNGRSRGTGVVEFDTAENAETAINKFTGYQYGGRPLGLTF 444
>gi|393216080|gb|EJD01571.1| pre-mRNA branch site protein p14 [Fomitiporia mediterranea MF3/22]
Length = 123
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL ++ DD + +FG +GSI + G+ E +G AFV + V A
Sbjct: 17 ILFVKNLNYNITGDDLYELFGR-YGSIRQIRLGV------ESNTKGTAFVVYDDVTDAKN 69
Query: 86 ALNLVNGYVFKGKPMIIQF---GRNPAAA 111
AL +NG+ + + +++ + R AAA
Sbjct: 70 ALEHLNGFHLQERYIVVLYHMPSRQDAAA 98
>gi|317029023|ref|XP_001390966.2| RNP domain protein [Aspergillus niger CBS 513.88]
Length = 480
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G+ ++V+Y++NL +D +F ++ G +D A+ ++ GR RG V F
Sbjct: 371 SGGDKSAVIYVRNLPWSTCNEDLVDLFSTI-GKVDRAE----IQYEPNGRSRGTGVVQFD 425
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
S + A A+ GY + G+P+ I F
Sbjct: 426 SADTAETAIAKFTGYQYGGRPLGITF 451
>gi|350630184|gb|EHA18557.1| hypothetical protein ASPNIDRAFT_52545 [Aspergillus niger ATCC 1015]
Length = 486
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G+ ++V+Y++NL +D +F ++ G +D A+ ++ GR RG V F
Sbjct: 377 SGGDKSAVIYVRNLPWSTCNEDLVDLFSTI-GKVDRAE----IQYEPNGRSRGTGVVQFD 431
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
S + A A+ GY + G+P+ I F
Sbjct: 432 SADTAETAIAKFTGYQYGGRPLGITF 457
>gi|325182719|emb|CCA17174.1| U1 small nuclear ribonucleoprotein A putative [Albugo laibachii
Nc14]
Length = 234
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LYI NL + PD + SL+ S L + + + +RGQA++TF V
Sbjct: 25 PIHTLYIHNLNDKIKPDR---LKQSLYASFSQFGKVLEIAIFKARFLRGQAWITFDDVPS 81
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A AL +N K MI+QF + +
Sbjct: 82 ASNALRSMNNTTIFDKNMIVQFAKQES 108
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNLA+ DD FG +G I +A +V EG+ +G FV F + + A RA
Sbjct: 201 VYVKNLAESTTDDDLKNAFGE-YGKITSA----VVMKDGEGKSKGFGFVNFENADDAARA 255
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F K +
Sbjct: 256 VESLNGHKFDDKEWYV 271
>gi|398394979|ref|XP_003850948.1| hypothetical protein MYCGRDRAFT_28783, partial [Zymoseptoria
tritici IPO323]
gi|339470827|gb|EGP85924.1| hypothetical protein MYCGRDRAFT_28783 [Zymoseptoria tritici IPO323]
Length = 90
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
G P +++Y+KNL DD +F ++ G ++ A+ V+ GR RG V F S
Sbjct: 8 GGQPNAIIYVKNLPWATSDDDLVELFQTI-GIVERAE----VQYKANGRHRGAGVVQFGS 62
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
A A+ + GY + G+P+ + + R
Sbjct: 63 QGDATTAIMRLQGYSYGGRPLHLNYAR 89
>gi|225560818|gb|EEH09099.1| RNP domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 471
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
G +PP + G ++ +Y++NL +D +F ++ G ++ A+ +
Sbjct: 351 GSVPPNPFTDFAT----SGGERSATIYVRNLPWSTCNEDLVDLFSTI-GKVEKAE----I 401
Query: 62 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
+ GR RG V F + E A A+N GY + G+P+ + F
Sbjct: 402 QYEPNGRSRGTGVVEFDTAENAETAINKFTGYQYGGRPLGLTF 444
>gi|359457481|ref|ZP_09246044.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 137
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYI NL K++ D+ +F + G + + K +V + G+ RG FVT + E A +
Sbjct: 5 LYIGNLPKELDRDELAALFTAEVGELTSTK---VVTDRKTGKCRGFGFVTVETDEQADQV 61
Query: 87 LNLVNGYVFKGKPMIIQ 103
+ +NG+VFK + I+
Sbjct: 62 IAKLNGHVFKDNALKIE 78
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
LYIKNL D V D+ S FG+I + K+M++ G RG FV+F E A
Sbjct: 308 LYIKNL-DDSVGDEELMELFSEFGTITS------CKVMRDPNGISRGSGFVSFSIAEGAT 360
Query: 85 RALNLVNGYVFKGKPMIIQFGR 106
RAL +NG + GKP+ + +
Sbjct: 361 RALGEMNGKMVAGKPLYVALAQ 382
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL + D +FG +G+I +A +V +G+ +G FV F +V+ A +A
Sbjct: 205 VFVKNLLDSMTEADLERIFGE-YGAITSA----VVMRDVDGKSKGFGFVNFANVDDAAKA 259
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG F GK +
Sbjct: 260 VEALNGKNFDGKEWYV 275
>gi|347841226|emb|CCD55798.1| hypothetical protein [Botryotinia fuckeliana]
Length = 323
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 13 PMFKNYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
P + TAG S ++Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 210 PFTDHATAGTERSEIIYVRNLPWSTSNEDLVELFTTI-GKVEQAE----IQYEPNGRSRG 264
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
V F S E A A+ +GY + G+P+ + F
Sbjct: 265 TGVVRFDSAENADTAIEKFSGYQYGGRPLGLSF 297
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK----LMQEGRMRGQAFVTFPSVEL 82
+Y+ NL V D +F AA++G +V+ + +GR +G V F S +
Sbjct: 61 IYVSNLPYTVGWQDLKDLFRG------AARNGAVVRADVHVGPDGRPKGSGIVAFESPDD 114
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A A+ NGY ++G+P+ ++ R
Sbjct: 115 ARNAIQQFNGYDWQGRPLEVREDR 138
>gi|346978177|gb|EGY21629.1| pre-mRNA branch site protein p14 [Verticillium dahliae VdLs.17]
Length = 117
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVMDAKQA 68
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F+ + +++
Sbjct: 69 CDKLNGFNFQNRYLVV 84
>gi|226443332|ref|NP_001139849.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
gi|221219334|gb|ACM08328.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + D+ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTM---KMRGQAFVVFKELAS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F PM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYNNPMRIQYAK 85
>gi|297826425|ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
gi|297326934|gb|EFH57354.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
Length = 232
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI+NL + + ++ + S FG I L V ++ ++RGQA+VTF
Sbjct: 8 PNQSIYIQNLNEKIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRLQYAK 88
>gi|452838817|gb|EME40757.1| hypothetical protein DOTSEDRAFT_27368 [Dothistroma septosporum
NZE10]
Length = 234
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 23 PASVLYIKNLAKDV-VP------DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
P + +YIKNL + V +P D F FG + + AK L R RGQAF+
Sbjct: 6 PNATIYIKNLDEKVKIPALEAALRDTFEEFGDIIDVV--AKKNL--------RARGQAFI 55
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F S E A AL + G+ +PM IQ+ + + A
Sbjct: 56 VFSSPEEAELALESLQGFEIFERPMDIQYAKTRSDA 91
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL D+ +F +F FG+I +A +++ EG+ RG FV + + E A RA
Sbjct: 336 IYVKNLDTDITEAEFRVMF-EEFGNITSA----VLQTDNEGKSRGFGFVNYENHEEAERA 390
Query: 87 LNLVNGYVFKGKPMII 102
+N ++ KGK + +
Sbjct: 391 VNEMHEKEIKGKVLFV 406
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KN+ D + D+ + FG + + K V + +GR +G FV F + E H A
Sbjct: 317 LYLKNI-DDSINDEGLKILFEEFGQVTSCK----VMVDAQGRSKGSGFVLFATAEAGHSA 371
Query: 87 LNLVNGYVFKGKPMII 102
+N +NG + KP+ +
Sbjct: 372 INGMNGRIVGKKPLYV 387
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL + + + +F S FG+I + K V G+ +G FV + + E A A
Sbjct: 127 LFVKNLEPSIDSKNLYEMFSS-FGTILSCK----VATDSAGQSKGYGFVQYETEESAQDA 181
Query: 87 LNLVNGYVFKGKPMII 102
+N +NG + + M +
Sbjct: 182 INRLNGMLANDREMFV 197
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG-RMRGQAFVTFPSVELAHR 85
LYIKNL D + D+ S FGSI VK+MQEG + +G + F S+E A +
Sbjct: 266 LYIKNL-DDTIDDEKLRKEFSSFGSISR------VKVMQEGGQSKGFGLICFSSLEEATK 318
Query: 86 ALNLVNGYVFKGKPMII 102
A+ +NG++ KP+ I
Sbjct: 319 AMTEMNGHILGSKPLSI 335
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D D+ S FG+I + K V + GR +G FV+F + E A +A
Sbjct: 320 LYLKNL-DDSFSDEKLKDLFSEFGTITSCK----VMIDSNGRSKGSGFVSFSTPEEASKA 374
Query: 87 LNLVNGYVFKGKPMII 102
LN +NG + KP+ +
Sbjct: 375 LNEMNGKLIGRKPLYV 390
>gi|343427935|emb|CBQ71460.1| related to NSR1-nuclear localization sequence binding protein
[Sporisorium reilianum SRZ2]
Length = 459
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P+S L+I NL+ D+ DD + F S G + + + K GR +G +V F + E
Sbjct: 304 PSSTLFIGNLSFDISEDDVWNAF-SEHGEVSGVR---LPKDPDSGRPKGFGYVEFAAQES 359
Query: 83 AHRALNLVNGYVFKGKPMIIQF 104
A AL+ + G G+P+ + F
Sbjct: 360 AQAALDAMTGQELAGRPLRLDF 381
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S LY+KNL++ + +FG +G I +AK V + GR +G FV F + E +
Sbjct: 304 SNLYVKNLSESMNETRLREIFGC-YGQIVSAK----VMCHENGRSKGFGFVCFSNCEESK 358
Query: 85 RALNLVNGYVFKGKPMIIQ 103
+A +NG++ GKP++++
Sbjct: 359 QAKRYLNGFLVDGKPIVVR 377
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD + S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG V KP+ + + K
Sbjct: 344 VTELNGRVVGSKPLYVALAQRKEERK 369
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 365 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 418
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ I
Sbjct: 419 VTEMNGRIVATKPLYI 434
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D V D+ S FG+I + K V L +G +G FV F + E A RA
Sbjct: 758 LYLKNL-DDSVNDEKLKELFSEFGTITSCK----VMLDPQGLSKGSGFVAFLTPEEATRA 812
Query: 87 LNLVNGYVFKGKPMII 102
LN++NG + KP+ +
Sbjct: 813 LNVMNGKMIGRKPLYV 828
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 16 KNYTAGNPA-SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAF 74
+N G+P + +Y+KNL++ DD +FG +GSI +A +V G + F
Sbjct: 642 RNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGK-YGSITSA----VVMRDASGMSKCFGF 696
Query: 75 VTFPSVELAHRALNLVNGYVF 95
V F S + A A+ +NG F
Sbjct: 697 VNFQSSDSAAAAVEHLNGATF 717
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD + S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG V KP+ + + K
Sbjct: 344 VTELNGRVVGSKPLYVALAQRKEERK 369
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|119467920|ref|XP_001257766.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
gi|119405918|gb|EAW15869.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
Length = 213
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K+ AG P LY NL + D +LF + L V ++ +MRGQA +
Sbjct: 15 KSVPAGVPNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTV---LDVVALKTEKMRGQAHI 71
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
F V+ + +A+ + G+ F G+ M+ FG N
Sbjct: 72 VFKDVQASTQAMRALQGFEFFGREMVGAFGFN 103
>gi|74354072|gb|AAI02329.1| SNRPB2 protein [Bos taurus]
Length = 106
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ AL + G+ F GKPM IQ+ + +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDS 88
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D D+ S FG+I + K V + GR +G FV+F + E A +A
Sbjct: 320 LYLKNL-DDSFSDEKLKDLFSEFGTITSCK----VMIDSNGRSKGSGFVSFSTPEEASKA 374
Query: 87 LNLVNGYVFKGKPMII 102
LN +NG + KP+ +
Sbjct: 375 LNEMNGKLIGRKPLYV 390
>gi|326472389|gb|EGD96398.1| U1 small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
Length = 267
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVELAH 84
LY++NL + + + +F ++ G I++++ + + +GQAF+ F +V+ A
Sbjct: 28 LYVRNLEERIKVEQLKEALTEIF-----SEYGSILEIVAKTNLKAKGQAFIVFDNVDSAT 82
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAA 111
RA++ VNG+ KPM++++ + + A
Sbjct: 83 RAIDEVNGFELFEKPMVLEYAKTKSDA 109
>gi|154309069|ref|XP_001553869.1| hypothetical protein BC1G_07429 [Botryotinia fuckeliana B05.10]
Length = 157
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P + LY+ NL + + P LF ++ G I++++ + ++ GQAF+ F V
Sbjct: 13 PNATLYVNNLEESIKPAALIEALTELF-----SEYGTILEIVAKTNLKAKGQAFIVFEDV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A +A+ + G+ GK M I + + + A
Sbjct: 68 ESATKAIEDIQGFELFGKEMRIAYAKTRSDA 98
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FGSI +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGSITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L +DV + F S G+I + + + + M R G A+V F
Sbjct: 9 PIASLYVGDLHQDVTEAMLYEKF-SPAGAIVSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRK 95
>gi|403418853|emb|CCM05553.1| predicted protein [Fibroporia radiculosa]
Length = 123
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL + DD + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGDDLYDLFGR-YGSIRQIRIG------NEQKSRGTAFVVFDDVMDAKN 69
Query: 86 ALNLVNGYVFKGKPMIIQF 104
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|407860731|gb|EKG07463.1| hypothetical protein TCSYLVIO_001404 [Trypanosoma cruzi]
Length = 601
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S L++ L V ++ + F LFG I++AK ++ + G+ RG AFV F V A
Sbjct: 237 SNLFVSGLHASVTDNELYKHF-HLFGEIESAK---VMLDIHTGKSRGIAFVKFKEVANAE 292
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+A +N VF G+ + ++ + AA +P
Sbjct: 293 KAAEEMNNSVFHGETIAVRVAKPHAAYRP 321
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 14 MFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQA 73
M NYT +YIKNL DV D+F LF A S I + + G+ RG
Sbjct: 235 MKANYTN------IYIKNLHADVTDDEFR----KLFEQYGAVTSSTIARDQETGKSRGFG 284
Query: 74 FVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+ F + E A +A+ +N G+ + +
Sbjct: 285 FINFTTHESAAKAVEELNSREIHGQELYV 313
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D V D+ S FG+I + K V L +G +G FV F + E A RA
Sbjct: 298 LYLKNL-DDSVNDEKLKELFSEFGTITSCK----VMLDPQGLSKGSGFVAFLTPEEATRA 352
Query: 87 LNLVNGYVFKGKPMII 102
LN++NG + KP+ +
Sbjct: 353 LNVMNGKMIGRKPLYV 368
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 16 KNYTAGNPA-SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAF 74
+N G+P + +Y+KNL++ DD +FG +GSI +A +V G + F
Sbjct: 182 RNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGK-YGSITSA----VVMRDASGMSKCFGF 236
Query: 75 VTFPSVELAHRALNLVNGYVF 95
V F S + A A+ +NG F
Sbjct: 237 VNFQSSDSAAAAVEHLNGATF 257
>gi|260834973|ref|XP_002612484.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
gi|229297861|gb|EEN68493.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
Length = 466
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID + ++K + GR +G F+TF E A +A
Sbjct: 146 LYVGSLHFNITEDMLRGIF-EPFGKIDNIQ---LMKDSETGRSKGYGFITFHDAECAKKA 201
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 202 LEQLNGFELAGRPMKV 217
>gi|389633809|ref|XP_003714557.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae 70-15]
gi|351646890|gb|EHA54750.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae 70-15]
gi|440466499|gb|ELQ35764.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae Y34]
gi|440482089|gb|ELQ62610.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae P131]
Length = 115
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F+ + +++
Sbjct: 68 CDKLNGFNFQNRYLVV 83
>gi|3659937|pdb|1A9N|B Chain B, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
gi|3659938|pdb|1A9N|D Chain D, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 96
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ AL + G+ F GKPM IQ+ + +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDS 88
>gi|303312245|ref|XP_003066134.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105796|gb|EER23989.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 135
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGL-----IVKLMQEGRM---------RG 71
+L++KNL+ +V DD F +FG FG I A L +KL GR +G
Sbjct: 14 ILFVKNLSYNVTADDLFDLFGK-FGPIRYAALHLPTALAHLKLTISGRQIRQGIAANSKG 72
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112
AFV + V A +A + +NG+ F+ + +++ + + AK
Sbjct: 73 TAFVVYEDVHDAKQACDKLNGFNFQNRYLVVLYHQPEKMAK 113
>gi|392568273|gb|EIW61447.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 260
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
++ P + LYIKNL V ++ + + +G I L V ++ +M+GQAF+
Sbjct: 2 SSTQPNTTLYIKNLNDKVKKEELRAQLYALFTTYGRI------LDVVALKGPKMKGQAFL 55
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
F + A AL G VF KPM I++ + + A
Sbjct: 56 VFSDLAGATAALRGCEGTVFYDKPMHIEYAKTKSYA 91
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M++G
Sbjct: 254 EQLKLERLSRYQGVN----LYVKNL-DDSINDERLRREFAPFGTITSAKV-----MMEDG 303
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 304 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGK 98
FV F + E A+++++ VNG + GK
Sbjct: 142 GFVHFETEEAANKSIDKVNGMLLNGK 167
>gi|348534739|ref|XP_003454859.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Oreochromis
niloticus]
Length = 282
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + + +M+GQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVARNIKMKGQAFVIFKEINS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAK 88
>gi|295314954|gb|ADF97627.1| small nuclear ribonucleoprotein polypeptide A [Hypophthalmichthys
molitrix]
Length = 281
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + +MRGQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSPTLKMRGQAFVIFKEINS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQ 89
>gi|71024221|ref|XP_762340.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
gi|46101864|gb|EAK87097.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
Length = 475
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P+S L+I NL+ DV DD + F S G + + + K GR +G +V F + E
Sbjct: 310 PSSTLFIGNLSFDVSEDDVWNAF-SEHGEVSGVR---LPKDPDSGRPKGFGYVEFAAQES 365
Query: 83 AHRALNLVNGYVFKGKPMIIQF 104
A A++ + G G+P+ + F
Sbjct: 366 AQAAIDAMTGQELAGRPLRLDF 387
>gi|149234914|ref|XP_001523336.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453125|gb|EDK47381.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 437
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 19 TAGN--PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
T GN P+ ++++NL DD F +F ++ G + A+ ++ +GR G A V
Sbjct: 284 TGGNEEPSETIFVENLPFSTQNDDLFDLFETV-GRVTKAE----IQYQADGRASGNAVVQ 338
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 108
F EL+ +A+ +N Y + G+ + I + P
Sbjct: 339 FELAELSDKAIQELNDYEYGGRRLQISYAHRP 370
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
V+L GR RG V F + E A +A+N+ GY G+ + + GR+ A +
Sbjct: 208 VRLDDWGRSRGFGTVVFATPEEADKAVNMFQGYSLDGRVLDTRHGRSTAVS 258
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL V D FG + G+I +AK I++ + RG FV F + E A RA
Sbjct: 354 LYVKNLDDAVTDDMLRDEFGGM-GTITSAK---IMRDAKTNNSRGFGFVCFSTPEDATRA 409
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+N ++G + GKP+ + +
Sbjct: 410 VNEMSGKIVAGKPIYVSLAQ 429
>gi|393215680|gb|EJD01171.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 268
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P LY+ NL + D+ F F + +G + + + ++ RM+GQAFV F
Sbjct: 7 PNPTLYVNNLNDKINKDELKKQLFSFFTTYGRV------IDIIAIKSARMKGQAFVVFAD 60
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A A+ G +F KP+ I + ++ + A
Sbjct: 61 LPEATTAMRACEGMIFYDKPLHIHYAKSKSYA 92
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M++G
Sbjct: 283 EQLKLERLSRYQGVN----LYVKNL-DDSINDERLRREFAPFGTITSAKV-----MMEDG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ +V ++F +F + FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNINNEVTDEEFRELF-AKFGEVTSSS----LARDQEGKTRGFGFVNFTTHEAAAQA 297
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVEL 82
S +Y+KN+ DV ++ F S FG+I ++K LM++ G +G FV F + +
Sbjct: 296 SNVYVKNIDDDVTDEELRERF-SQFGTITSSK------LMRDDKGINKGFGFVCFSNPDE 348
Query: 83 AHRALNLVNGYVFKGKPMII 102
A RA+N + G +F GKP+ +
Sbjct: 349 AKRAVNTLQGCMFHGKPLYL 368
>gi|429864037|gb|ELA38421.1| u1 small nuclear [Colletotrichum gloeosporioides Nara gc5]
Length = 247
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 23 PASVLYIKNLAK----DVVPDDFFFVFGSLFGSID-AAKSGLIVKLMQEGRMRGQAFVTF 77
P + +Y++NL + D + D +F +D AKS L R +GQAFV F
Sbjct: 6 PITTVYVRNLEERAKIDQLKDALLQIFSEYGNVLDIVAKSNL--------RAKGQAFVVF 57
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
S E A +A++ V G+ KPM + R + A
Sbjct: 58 DSPESAQKAIDDVQGFELFDKPMQLALARTRSDA 91
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L L Y N LY+KNL D + D+ + FG+I +AK +M++G
Sbjct: 283 EQLKLERLSRYQGVN----LYVKNL-DDSINDERLRREFAPFGTITSAKV-----MMEDG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K++ + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNILSCK----VAQDESGVSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG-RMRGQAFVTFPSVELAHR 85
LY+KNL DVV D+ S FG+I +A+ +M EG R +G FV F S E A +
Sbjct: 297 LYVKNL-DDVVDDERLRKEFSQFGTITSAR------VMSEGGRSKGFGFVCFSSPEEATK 349
Query: 86 ALNLVNGYVFKGKPMII 102
A+ +NG + KP+ +
Sbjct: 350 AVTEMNGRIIVSKPLYV 366
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKIA-----SDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A +A+ VNG + GK + +
Sbjct: 141 GFVHFETEEAARQAIEKVNGMLLNGKKVYV 170
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG V KP+ + +
Sbjct: 350 VTEMNGRVVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|355721044|gb|AES07134.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 120
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 15 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 71
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ AL + G+ F GKPM IQ+ + +
Sbjct: 72 STNALRQLQGFPFYGKPMRIQYAKTDS 98
>gi|27692318|gb|AAH08311.1| Similar to small nuclear ribonucleoprotein polypeptide B'', partial
[Homo sapiens]
Length = 109
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ AL + G+ F GKPM IQ+ + +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDS 88
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KN+ D + D+ + FG+I +AK ++++G
Sbjct: 283 EQLKMERLSRYQGVN----LYVKNI-DDNIDDERLRKEFTPFGTITSAKV-----MLEDG 332
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F S E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYV 367
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKAMYDTF-STFGNILSCK----VAQDESGTSKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIDKVNGMLLNGKRVFV 171
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV F F S S + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDVTEAMLF----EKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNYDPLKGKPIRIMWSQRDPSLRK 95
>gi|302922980|ref|XP_003053579.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734520|gb|EEU47866.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 116
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 68
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|12836810|dbj|BAB23823.1| unnamed protein product [Mus musculus]
Length = 101
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
+ AL + G+ F GKPM IQ+ + +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDS 88
>gi|322704095|gb|EFY95694.1| RNA splicing factor Pad-1 [Metarhizium anisopliae ARSEF 23]
Length = 558
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 19 TAGNPASV----LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQ 72
T+GNP SV LY+ N+ +V D VF FG ++ V+L ++ GR RG
Sbjct: 263 TSGNPNSVPFHRLYVGNIHFNVTEQDLQAVFEP-FGELE------YVQLQKDDNGRSRGY 315
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
FV F A AL +NG+ G+P+ + G +
Sbjct: 316 GFVQFRDATQAREALEKMNGFDLAGRPIRVGLGND 350
>gi|410261842|gb|JAA18887.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349771|gb|JAA41489.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K G +G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGHSKGY 306
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL +V ++F +F S FG I +A +++ +EG +G FV F + E A RA
Sbjct: 257 LYVKNLDTEVGEEEFEGLF-SQFGPITSA----VIQKDEEGNSKGFGFVNFENHEDAQRA 311
Query: 87 LNLVNGYVFKGKPMII 102
+ ++ GKP+ +
Sbjct: 312 VEELDNKEIHGKPVFV 327
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S LYIKNL DV + F FG+I + K V ++G +G FV F S + A
Sbjct: 358 SNLYIKNLEDDVDDEKLRAEF-EPFGTITSCK----VMRDEKGTSKGFGFVCFSSPDEAT 412
Query: 85 RALNLVNGYVFKGKPMII 102
RA++ +N + KP+ +
Sbjct: 413 RAMSEMNNKIVGTKPLYV 430
>gi|405123760|gb|AFR98523.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 284
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
RMRGQAFV+FP +E A+ A VN + GK + IQF +
Sbjct: 99 RMRGQAFVSFPDIESANEARKDVNEFPLYGKSIQIQFAK 137
>gi|358398756|gb|EHK48107.1| hypothetical protein TRIATDRAFT_155183 [Trichoderma atroviride IMI
206040]
Length = 116
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVMDAKQA 68
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|322694933|gb|EFY86751.1| RNA splicing factor Pad-1 [Metarhizium acridum CQMa 102]
Length = 562
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 19 TAGNPASV----LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQ 72
T+GNP SV LY+ N+ +V D VF FG ++ V+L ++ GR RG
Sbjct: 267 TSGNPNSVPFHRLYVGNIHFNVTEQDLQAVFEP-FGELE------YVQLQKDDNGRSRGY 319
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
FV F A AL +NG+ G+P+ + G +
Sbjct: 320 GFVQFRDATQAREALEKMNGFDLAGRPIRVGLGND 354
>gi|121709896|ref|XP_001272564.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119400714|gb|EAW11138.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 194
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K+ AG P LY NL + D +LF + L V M+ +MRGQA +
Sbjct: 15 KSLPAGLPNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTV---LDVVAMKTEKMRGQAHI 71
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
F V+ + +A+ + G+ F GK M I + +
Sbjct: 72 VFKDVQASTQAMRALQGFDFFGKEMKIVYAK 102
>gi|410218752|gb|JAA06595.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307724|gb|JAA32462.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307728|gb|JAA32464.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K G +G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGHSKGY 306
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 463 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 516
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 517 VTEMNGRIVATKPLYV 532
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 360 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 412
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 413 KAVDEMNGKELNGKQIYV 430
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E + F+ Y N LY+KNL D + D+ S +G+I +AK V ++G
Sbjct: 306 EEKRMEQFQKYQGAN----LYVKNL-DDSIDDETLKQEFSRYGNITSAK----VMRDEKG 356
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
+G FV F S E A RA NG + GKP+ +
Sbjct: 357 ISKGFGFVCFTSPEEASRAATETNGLMINGKPIYV 391
>gi|407915850|gb|EKG09360.1| hypothetical protein MPH_13626 [Macrophomina phaseolina MS6]
Length = 218
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 15 FKNY--TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
F +Y + G ++++Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 105 FTDYATSGGERSNIIYVRNLPWSTSNEDLVELFTTI-GKVERAE----IQYEPNGRSRGT 159
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
V F + E A A++ GY + G+P+ + F
Sbjct: 160 GVVEFDTAENAETAISKFTGYQYGGRPLGLSF 191
>gi|410218750|gb|JAA06594.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307726|gb|JAA32463.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K G +G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGHSKGY 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 291 GFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ + D+F +F + FG++ +A +++ +EGR RG FV F + E A +A
Sbjct: 235 VYVKNIDPEANDDEFRELF-TPFGNVTSA----VLQRDEEGRSRGFGFVNFETHEEAQKA 289
Query: 87 LNLVNGYVFKGKPMII 102
++ ++ FKG+ + +
Sbjct: 290 VDTLHDSDFKGRKLFV 305
>gi|342321005|gb|EGU12943.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 24 ASVLYIKNLAK----DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+ VLY+ NL + D++ +F +G + L V + RMRGQAFVT S
Sbjct: 55 SEVLYVNNLNEKIKLDIMKQSLKVLFRE-YGRV------LGVTAHRNVRMRGQAFVTLDS 107
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A +A+ V + GKPM + F R + A
Sbjct: 108 KEAAVKAVKEVQKFPLYGKPMQLTFARTESDA 139
>gi|410261840|gb|JAA18886.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349769|gb|JAA41488.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349773|gb|JAA41490.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K G +G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGHSKGY 290
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM +
Sbjct: 291 GFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|322699127|gb|EFY90891.1| pre-mRNA branch site protein p14 [Metarhizium acridum CQMa 102]
Length = 177
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
L++KNL+ V P++ F +FG FG I + G+ +G AFV + V A +
Sbjct: 15 ALFVKNLSYSVTPEELFDLFGK-FGPIRQVRQGISTS------TKGTAFVVYEDVMDAKQ 67
Query: 86 ALNLVNGYVFKGKPMIIQF 104
A + +NG+ F+ + +++ +
Sbjct: 68 ACDKLNGFNFQNRYLVVLY 86
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 13 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 66
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 67 VTEMNGRIVATKPLYV 82
>gi|72393389|ref|XP_847495.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359593|gb|AAX80026.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70803525|gb|AAZ13429.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 666
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S L+I L V +F S FGSI++AK L + GR RG AFV F + A
Sbjct: 272 SNLFISGLRHSVTDSGLHELF-SPFGSIESAKVMLDI---HTGRSRGIAFVKFVRLCDAQ 327
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
RA+ +NG +F G+ + ++ + AA +P
Sbjct: 328 RAVEALNGSIFCGETITVRVAKPNAAYRP 356
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D+ ++ F S FG+I +AK +M GR +G FV F + E A A
Sbjct: 395 LYIKNLDDDIDDENLRKEFSS-FGTITSAKV-----MMNNGRSKGFGFVCFSAPEEATTA 448
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 449 VTEMNGRLVASKPLYVALAQ 468
>gi|225554392|gb|EEH02691.1| RNA binding domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 190
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDIVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I + +
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYAK 95
>gi|261330753|emb|CBH13738.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 666
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S L+I L V +F S FGSI++AK L + GR RG AFV F + A
Sbjct: 272 SNLFISGLRHSVTDSGLHELF-SPFGSIESAKVMLDI---HTGRSRGIAFVKFVRLCDAQ 327
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
RA+ +NG +F G+ + ++ + AA +P
Sbjct: 328 RAVEALNGSIFCGETITVRVAKPNAAYRP 356
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG+I + K V G RG FV F + E A RA
Sbjct: 313 LYVKNL-DDSITDDKLKELFSEFGTITSCK----VMRDPNGVSRGSGFVAFSTAEEASRA 367
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L +NG + KP+ + +
Sbjct: 368 LTEMNGKMVVSKPLYVALAQ 387
>gi|296809910|ref|XP_002845293.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
gi|238842681|gb|EEQ32343.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
Length = 256
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P +Y++NL + + + +F ++ G I++++ + + +GQAF+ F +V
Sbjct: 13 PNPTVYVRNLEERIKIEQLKEALTEIF-----SEYGSILEIVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA++ VNG+ KPM++++ + + A
Sbjct: 68 DSATRAIDEVNGFELFEKPMVLEYAKTRSDA 98
>gi|401396957|ref|XP_003879947.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
gi|325114355|emb|CBZ49912.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
Length = 234
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG-RMRGQAFVTFPSVE 81
P LY NL + D F + GL+++++ G MRGQAFV F +
Sbjct: 34 PNQTLYCNNLNDKLHKQDLQACLYEFFSAY-----GLVLEVVVRGTNMRGQAFVVFADLS 88
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL G F GKP+ +Q+ + + A
Sbjct: 89 SATAALRAAQGKDFLGKPLRVQYAKTKSDA 118
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD + S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG V KP+ + + K
Sbjct: 344 VTELNGRVVGSKPLYVALAQRKEERK 369
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 25 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 78
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 79 VTEMNGRIVATKPLYV 94
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 298 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 351
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 352 VTEMNGRIVGTKPLYV 367
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKTIDNKAMYDTF-SAFGNILSCK----VAQDETGASKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ +V ++F +F + FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNINNEVTDEEFRELF-AKFGEVTSSS----LARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>gi|422294869|gb|EKU22169.1| U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis
gaditana CCMP526]
Length = 289
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 23 PASVLYIKNLAKDV----VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P LY++NL + + + + F + ID IV E +RGQA+V F
Sbjct: 69 PNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVID------IVACRGES-LRGQAWVVFD 121
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
SV A AL + G+ F GKPM IQF + + A
Sbjct: 122 SVGSATTALRSLQGFPFLGKPMRIQFAKGKSNA 154
>gi|154278922|ref|XP_001540274.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412217|gb|EDN07604.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 190
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDIVAMKTAKMRGQAHVVFRDI 69
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK M I + +
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYAK 95
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FG+I +AK +M+ GR +G FV F S + A +A
Sbjct: 330 LYIKNL-DDTINDEHLRKEFSPFGTITSAKV-----MMENGRSKGFGFVCFSSSKDAAKA 383
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+NG + KP+ + +
Sbjct: 384 SREMNGKLVASKPLYVSLAQ 403
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ DV DDF +F FG + S + + + G+ RG FV F S E A +A
Sbjct: 244 IYVKNIQLDVTDDDFRALF-EKFGHV---TSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 87 LNLVNGYVFKGKPMII 102
+ +N F G+ + +
Sbjct: 300 VEELNEKEFHGQNLYV 315
>gi|345567447|gb|EGX50379.1| hypothetical protein AOL_s00076g143 [Arthrobotrys oligospora ATCC
24927]
Length = 195
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P LYI NL + D +LF + G+++ + ++ +MRGQA V F +
Sbjct: 24 PNQTLYISNLNDKIHKPDLKIALYTLFSTY-----GVVLDVIALKTAKMRGQAHVAFRDI 78
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 109
A A+ G V GK M IQ+ R+ +
Sbjct: 79 AGASSAMRGCQGMVIFGKEMKIQYARSKS 107
>gi|146093385|ref|XP_001466804.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398019095|ref|XP_003862712.1| hypothetical protein, conserved [Leishmania donovani]
gi|134071167|emb|CAM69853.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322500942|emb|CBZ36019.1| hypothetical protein, conserved [Leishmania donovani]
Length = 210
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA+DV D +F + FG +D A+ I+ Q RG FV F + A +A
Sbjct: 115 LIVNYLAQDVTSADLHTLF-ARFGPLDGAR---IIFDRQTSMPRGYGFVYFRYPDSAKQA 170
Query: 87 LNLVNGYVFKGKPMIIQFGRNP 108
++ +NGY F GK + + + NP
Sbjct: 171 VDTMNGYEFHGKRLKVGYSTNP 192
>gi|169589|gb|AAA33847.1| spliceosomal protein [Solanum tuberosum]
Length = 231
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL--MQEGRMRGQAFVTFPSV 80
P +YIKNL + V ++ LF ++ G IV + ++ ++RGQ++V F V
Sbjct: 9 PNQTIYIKNLNEKVKKEELKRSLYCLF-----SQYGRIVDIVALKTPKLRGQSWVVFSEV 63
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRN 107
A A+ + + F KPM IQ+ ++
Sbjct: 64 TAASNAVRQMQNFPFYDKPMRIQYAKS 90
>gi|347838217|emb|CCD52789.1| similar to u2 small nuclear ribonucleoprotein b'' [Botryotinia
fuckeliana]
Length = 252
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMR--GQAFVTFPSV 80
P + LY+ NL + + P LF ++ G I++++ + ++ GQAF+ F V
Sbjct: 13 PNATLYVNNLEESIKPAALIEALTELF-----SEYGTILEIVAKTNLKAKGQAFIVFEDV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
E A +A+ + G+ GK M I + + + A
Sbjct: 68 ESATKAIEDIQGFELFGKEMRIAYAKTRSDA 98
>gi|119472580|ref|XP_001258373.1| RNP domain protein [Neosartorya fischeri NRRL 181]
gi|119406525|gb|EAW16476.1| RNP domain protein [Neosartorya fischeri NRRL 181]
Length = 463
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G + ++Y++NL DD +F ++ G ++ A+ ++ GR RG V F
Sbjct: 354 SGGEKSPIIYVRNLPWSTCNDDLVDLFSTI-GKVERAE----IQYEPNGRSRGTGVVQFD 408
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
+ E A A+ GY + G+P+ I F
Sbjct: 409 NAETAETAIAKFTGYQYGGRPLGITF 434
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 170 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 223
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 224 VTEMNGRIVATKPLYV 239
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 67 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 120 KAVDEMNGKELNGKQIYV 137
>gi|340052756|emb|CCC47040.1| putative RNA-binding protein TbRBP6 [Trypanosoma vivax Y486]
Length = 231
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA DV ++ +F S FG +D A+ ++ Q +G FV F +VE A A
Sbjct: 133 LIVNYLAPDVTSNELHELF-SRFGELDGAR---VIYDRQTHMSKGYGFVYFSNVEDAKDA 188
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+NGY GK + + + NP P
Sbjct: 189 FERMNGYELHGKWLKVSYSTNPVNIVP 215
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRNKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ I
Sbjct: 350 VTEMNGRIVATKPLYI 365
>gi|449295164|gb|EMC91186.1| hypothetical protein BAUCODRAFT_59124, partial [Baudoinia
compniacensis UAMH 10762]
Length = 97
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI+NL + + +D ++ S +G + L V ++ +MRGQA VT
Sbjct: 1 PNQSIYIQNLPEKLQKEDLRRELYMLFSTYGPV------LDVIALKTAKMRGQAHVTMRD 54
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
V+ A +A+ G+ G+ M + + +N + A
Sbjct: 55 VQSATQAIRACQGFELCGREMRLSYSKNRSDA 86
>gi|440801091|gb|ELR22116.1| hypothetical protein ACA1_159130 [Acanthamoeba castellanii str.
Neff]
Length = 270
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LY+ NL + V D+ + +L+G + L + + ++RGQAFV F +
Sbjct: 7 PNETLYVNNLNEKVKRDE---LRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIGS 63
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRNPA 109
A AL + + F KPM IQ+ ++ +
Sbjct: 64 ASTALKALQSFAFYDKPMHIQYAKSKS 90
>gi|428775117|ref|YP_007166904.1| RNP-1 like RNA-binding protein [Halothece sp. PCC 7418]
gi|428689396|gb|AFZ42690.1| RNP-1 like RNA-binding protein [Halothece sp. PCC 7418]
Length = 164
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ NL KD V +FG D + S ++K + G RG AFVT P+ E A
Sbjct: 5 LYVGNLPKDTVE---RQELQEVFGEADESLSIKVIKDRKTGNCRGFAFVTVPNDEKAEEI 61
Query: 87 LNLVNGYVFKGKPMIIQ 103
+ NG F+ + I+
Sbjct: 62 IEKYNGQTFRENALKIE 78
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFEKHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELSGKQIYV 263
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL + + + F +F S FG I +A +V+ +EG+ +G F+ F + E AH+A
Sbjct: 222 VYVKNLDESINDEQFKEMF-SKFGPITSA----LVQTDEEGKSKGFGFINFENYEDAHKA 276
Query: 87 LNLVNGYVFKGKPMII 102
++ +N GK + +
Sbjct: 277 VDTLNETEHNGKTLYV 292
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D+ + F S++G I +AK V ++G +G FV F S + A +A
Sbjct: 325 LYIKNLDDDIDDEKLRQEF-SVYGVITSAK----VMCDEKGTSKGFGFVCFSSPDEATKA 379
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 380 VTEMNGRMIGSKPIYVALAQ 399
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL KD+ F F S FG+I + + V ++G RG
Sbjct: 91 PSLRKSGVGN----VFIKNLHKDIDNKAIFDTF-SAFGNILSCR----VATDEQGNSRGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ A+N VNG + K + +
Sbjct: 142 GFVHFETEEAANEAINKVNGMLLNEKKVFV 171
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E L + Y N LY+KNL DV+ D+ + +G+I +AK ++
Sbjct: 283 EQLKMERMTRYQGVN----LYVKNL-DDVIDDERLRREFAPYGTITSAK---VMMDSTGA 334
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
R +G FV F S E A +A+ +NG + KP+ +
Sbjct: 335 RSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYV 369
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 7 EEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE 66
E L ++ + P LYI NL +V D VF S FG I+ VK++ +
Sbjct: 174 ETTLRTRPRRDTSDAPPGRTLYIGNLYYEVTADQLQRVF-SRFGEIEN------VKIIYD 226
Query: 67 GR--MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
R RG +V F ++ A A++ ++ VF+G+ +++QF R
Sbjct: 227 NRGLSRGFGYVEFKNIPDAQTAIDNLDMQVFEGRNLVVQFHR 268
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 8 EILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG 67
E + F+ Y N LY+KNL D + D+ S +G+I +AK V ++G
Sbjct: 305 EEKRMEQFQKYQGAN----LYVKNL-DDSIDDETLKQEFSRYGNITSAK----VMRDEKG 355
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
+G FV F S E A RA NG + GKP+ +
Sbjct: 356 ISKGFGFVCFTSPEEASRAATETNGLMINGKPIYV 390
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 27 LYIKNLAKDV---VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
++IKNL + + D F FG + A Q+GR +G FV F + E A
Sbjct: 127 IFIKNLDESIDNKALHDTFIAFGPILSCKIA---------HQDGRSKGYGFVHFETDEAA 177
Query: 84 HRALNLVNGYVFKGKPMII 102
+ A+ VNG GK + +
Sbjct: 178 NLAIEKVNGMQLVGKKVFV 196
>gi|427726072|ref|YP_007073349.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
gi|427357792|gb|AFY40515.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
Length = 148
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ NL KDVV D F F S ++K + G+ RG AFVT P+ E A
Sbjct: 5 LYVGNLPKDVVEKDALTTF---FADAGENASTKVIKDRKTGKCRGFAFVTVPTDEEADAF 61
Query: 87 LNLVNGYVFKGKPMIIQFG--RNPAAAKPS 114
+ NG F + I+ R KPS
Sbjct: 62 IEKYNGQSFMDSELKIEKALPRAKTDEKPS 91
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|389594239|ref|XP_003722366.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438864|emb|CBZ12624.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 210
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA+DV D +F + FG +D A+ I+ Q RG FV F + A +A
Sbjct: 115 LIVNYLAQDVTSADLHTLF-ARFGPLDGAR---IIFDRQTSMPRGYGFVYFRYPDSAKQA 170
Query: 87 LNLVNGYVFKGKPMIIQFGRNP 108
++ +NGY F GK + + + NP
Sbjct: 171 VDTMNGYEFHGKRLKVGYSTNP 192
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L V+LM + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVELMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 298 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 351
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 352 VTEMNGRIVGTKPLYV 367
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F + FG+I + K V + G +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKTIDNKAMYDTF-TAFGNILSCK----VAQDETGASKGY 141
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A++++ VNG + GK + +
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|317142939|ref|XP_001819205.2| pre-mRNA branch site p14-like protein [Aspergillus oryzae RIB40]
Length = 146
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 10 LSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRM 69
LS P A +L++KNL +V + F +FG FG I + G+
Sbjct: 29 LSHPRMSRKLAPEANRILFVKNLNYNVTAEQLFDLFGK-FGPIRQIRQGIA------NNS 81
Query: 70 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102
+G AFV + V A +A + +NG+ F+ + +++
Sbjct: 82 KGTAFVVYEDVHDAKQACDKLNGFNFQNRYLVV 114
>gi|41054443|ref|NP_955965.1| U1 small nuclear ribonucleoprotein A [Danio rerio]
gi|39850066|gb|AAH64308.1| Small nuclear ribonucleoprotein polypeptide A [Danio rerio]
Length = 281
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + + +M+GQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRTLKMKGQAFVIFKEINS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYSKQ 89
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM---QEGRMRGQAFVTFPSVELA 83
LY+ +L ++ D +F FG ID+ ++LM + GR +G F+TF E A
Sbjct: 248 LYVGSLHFNITEDMLRGIF-EPFGRIDS------IQLMMDSETGRSKGYGFITFSDAECA 300
Query: 84 HRALNLVNGYVFKGKPMII 102
+AL +NG+ G+PM +
Sbjct: 301 KKALEQLNGFELAGRPMKV 319
>gi|403373310|gb|EJY86574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 303
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 4 LPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL 63
LPP++ + P LY++NL + V D LF + + V
Sbjct: 47 LPPQQPSMMQKIMEEPLNPPNPTLYVQNLNERVKAADLKNALYQLFSNYGEV---IEVHA 103
Query: 64 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ +MRGQAFV E A A+ + GY+F GKP+ + + +
Sbjct: 104 KKNIKMRGQAFVVCQDEEAADSAIQALRGYMFFGKPLRLNYAK 146
>gi|390601524|gb|EIN10918.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 247
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFP 78
P + LY+ NL V ++ +LF + G ++ ++ + +MRGQAF+ F
Sbjct: 2 AQPNTTLYVNNLNDKVNKEELRAQLYALFTTY-----GKVIDVIASKTPKMRGQAFLVFS 56
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A AL G VF KP+ IQ+ + + A
Sbjct: 57 ELAGATSALRACEGMVFYDKPLRIQYAKTKSYA 89
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG------RMRGQAFVTFPSV 80
LY+KNL +V D+ F + +G+I +AK +M +G R RG FV F S
Sbjct: 144 LYVKNLDDNVTDDELREAFAT-YGTITSAK------IMSDGECSTGERSRGFGFVCFSSP 196
Query: 81 ELAHRALNLVNGYVFKGKPMII 102
E A +A+ +NG + KP+ +
Sbjct: 197 EEATKAVTEMNGRIVGTKPLYV 218
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D S FGSI +AK V ++G +G FV F + E A +A
Sbjct: 9 LYVKNL-DDAIDDARLKEEFSKFGSITSAK----VMCDEKGASKGFGFVCFATQEEASKA 63
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAKP 113
+N ++G + KP+ + F + K
Sbjct: 64 INEMSGRIIVSKPLYVTFAQRKEERKA 90
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 343 VTEMNGRIVGTKPLYV 358
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + F F S FG+I + K V + G +G
Sbjct: 82 PSLRKSGVGN----VFIKNLDKSIDNKALFDTF-SAFGNILSCK----VAQDETGASKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
FV F + E A++++ VNG + GK ++ GR
Sbjct: 133 GFVHFETEEAANKSIEKVNGMLLNGK--MVYVGR 164
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 316 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 369
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 370 VTEMNGRIVATKPLYV 385
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 213 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 266 KAVDEMNGKELNGKQIYV 283
>gi|444728803|gb|ELW69245.1| putative RNA-binding protein 23 [Tupaia chinensis]
Length = 450
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 247 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 301
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 302 SECARRALEQLNGFELAGRPM 322
>gi|15227729|ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
gi|75318049|sp|O22922.1|RU2B1_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|2347192|gb|AAC16931.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis thaliana]
gi|110743428|dbj|BAE99600.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|330253269|gb|AEC08363.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
Length = 232
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI+NL + + ++ + S FG I L V ++ ++RGQA+VTF
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAAGHAVRQMQNFPFYDKPMRLQYAK 88
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 316 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 369
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 370 VTEMNGRIVATKPLYV 385
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 213 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 266 KAVDEMNGKELNGKQIYV 283
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI K + +EGR +G + F S E A RA
Sbjct: 295 LYIKNL-DDTIDDEKLRREFSSFGSISRVKV-----MKEEGRSKGFGLICFSSPEEATRA 348
Query: 87 LNLVNGYVFKGKPMIIQFGRN 107
+ +NG + KP+ I ++
Sbjct: 349 MTEMNGRILGSKPLNIALAQS 369
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 318 VTEMNGRIVATKPLYV 333
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 161 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 214 KAVDEMNGKELNGKQIYV 231
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 187 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 240
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 241 VTEMNGRIVATKPLYV 256
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 84 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 136
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 137 KAVDEMNGKELNGKQIYV 154
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 232 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 285
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 286 VTEMNGRIVATKPLYV 301
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 129 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 181
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 182 KAVDEMNGKELNGKQIYV 199
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 232 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 285
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 286 VTEMNGRIVATKPLYV 301
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 129 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 181
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 182 KAVDEMNGKELNGKQIYV 199
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|400595349|gb|EJP63154.1| pre-mRNA branch site protein p14 [Beauveria bassiana ARSEF 2860]
Length = 169
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +
Sbjct: 15 ALFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SATKGTAFVVYEDVIDAKQ 67
Query: 86 ALNLVNGYVFKGKPMIIQF 104
A + +NG+ F+ + +++ +
Sbjct: 68 ACDKLNGFNFQNRYLVVLY 86
>gi|295670367|ref|XP_002795731.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284816|gb|EEH40382.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 253
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSV 80
P S +Y++NL + + + +F ++ G I+ L+ + + +GQAF+ F +V
Sbjct: 13 PNSTVYVQNLEERIKVEALKEALTEIF-----SEYGNIIDLVAKTNLKAKGQAFIVFDNV 67
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A RA+ +NG+ KPM++ + + + A
Sbjct: 68 DSATRAIEEINGFELFEKPMVLDYAKTRSDA 98
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|380091978|emb|CCC10246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 456
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K + S L++ NL + D +F F + AKS +V + GR RG +V
Sbjct: 158 KTEEVADDKSTLWVGNLGWGI---DDAILFAE-FEECEGAKSARVVTDRESGRSRGFGYV 213
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
F + + A +A + +G + +G+ M + F A KP
Sbjct: 214 DFENNDQAQKAYDAKSGGLLEGREMRLDFASKDAGNKP 251
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 47 SLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
F S+ + S I + GR +G A+VTF S+E A A + +NG +G+P+ + + +
Sbjct: 289 DFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIEDAKNAFDQLNGSDLQGRPVRLDYAK 348
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 225 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 278
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 279 VTEMNGRIVATKPLYV 294
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 122 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 174
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 175 KAVDEMNGKELNGKQIYV 192
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNLA+ + +F FG++ +AK +IVK GR +G FV+F S E A +A
Sbjct: 304 LFVKNLAESTDDEHLRKIFAP-FGTVTSAK--VIVK---GGRRKGFGFVSFSSREEAKKA 357
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ ++G + +P+ + + R
Sbjct: 358 VEEMHGKMLSARPLYVSYAR 377
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 342
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 343 VTEMNGRIVGTKPLYV 358
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K V + G +G
Sbjct: 82 PSLRKSGVGN----VFIKNLDKAIDNKAMYDTF-SAFGNILSCK----VAQDENGASKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A++++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 162
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P LY+KNL D + D+ + +G+I + K V G RG FV F + E
Sbjct: 315 PGLNLYLKNL-DDTISDEKLKEMFADYGTITSCK----VMRDPTGISRGSGFVAFSTPEE 369
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A RAL +NG +F GKP+ + +
Sbjct: 370 ATRALGEMNGKMFAGKPLYVALAQ 393
>gi|326428976|gb|EGD74546.1| hypothetical protein PTSG_05910 [Salpingoeca sp. ATCC 50818]
Length = 215
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 23 PASVLYIKNL----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
P LY+ NL K+ + +F+F S FG I L V ++ +MRGQAF+ F
Sbjct: 5 PNQTLYVNNLNDKIHKEELRRSLYFLF-SQFGPI------LDVVALKTPKMRGQAFIAFK 57
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ A A+ + + GKPM I + ++ + A
Sbjct: 58 DITCATNAMRALQSFNLFGKPMKIAYAKSKSIA 90
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 225 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 278
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 279 VTEMNGRIVATKPLYV 294
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 122 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 174
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 175 KAVDEMNGKELNGKQIYV 192
>gi|380473728|emb|CCF46147.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 105
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SGTKGTAFVVYEDVMDAKQA 68
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +I+ +
Sbjct: 69 CDKLNGFNFQNRYLIVLY 86
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 311 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 364
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 365 VTEMNGRIVATKPLYV 380
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 208 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 261 KAVDEMNGKELNGKQIYV 278
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNLA+ DD +FG FG I +A +V EG+ +G FV F + + A +A
Sbjct: 221 VYVKNLAESTTDDDLKNIFGE-FGKITSA----VVMKDGEGKPKGFGFVNFENADDAAKA 275
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG F K +
Sbjct: 276 VESLNGKTFDDKEWFV 291
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+S LY+KNL D V D+ + +G++ + K V G RG FV F + E A
Sbjct: 321 SSNLYVKNL-DDSVSDEKLKELFTPYGTVTSCK----VMRDPNGMSRGSGFVAFSTPEEA 375
Query: 84 HRALNLVNGYVFKGKPMII 102
+A++ ++G + + KP+ +
Sbjct: 376 TKAMSEMSGKMIENKPLYV 394
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D V DD S FGSI K + +EG+ +G V F S E A +A
Sbjct: 407 LYIKNL-DDTVDDDRLRRAFSSFGSISRVKV-----MEEEGQRKGFGLVCFSSPEEAAKA 460
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG V KP+ I +
Sbjct: 461 MTQMNGRVLGSKPLNIALAK 480
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|167520490|ref|XP_001744584.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776915|gb|EDQ90533.1| predicted protein [Monosiga brevicollis MX1]
Length = 86
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
++VL + L++D +FG FG ++ +I+ Q GR RG FVTF S E A
Sbjct: 1 SNVLGVFGLSRDTDERQLDSIFGD-FGQLEKC---IIIHDRQNGRSRGFGFVTFVSDEDA 56
Query: 84 HRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
RA +NG G+ + + F A P
Sbjct: 57 QRAREKLNGARIDGRNVRVDFSVTKRAHTP 86
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDEGGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 300 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 353
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 354 VTEMNGRIVATKPLYV 369
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 197 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 249
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 250 KAVDEMNGKELNGKQIYV 267
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNLA+DV F F S+ G+ +AK V EG+ RG A V + +LA RA
Sbjct: 105 LFVKNLAEDVDNKTIFDTFASI-GAPSSAK----VMTTAEGKSRGFAIVHYDDPQLAQRA 159
Query: 87 LNLVNGYVFKGK 98
L+ + G V GK
Sbjct: 160 LDELEGVVVNGK 171
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|443898591|dbj|GAC75925.1| FOG: RRM domain [Pseudozyma antarctica T-34]
Length = 593
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P T P+ +++KNL +D +F + G +D A+ + + GR +G
Sbjct: 469 PRSSGPTPTAPSQQIFVKNLPWSTSNEDLVELFQTT-GKVDEAEI-----MFEGGRSKGC 522
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
V F SV+ A A+ N YV+ G+P+ I F R
Sbjct: 523 GVVQFASVQDAETAIAKFNNYVYGGRPLEIYFNR 556
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 237 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 290
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 291 VTEMNGRIVATKPLYV 306
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 134 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 186
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 187 KAVDEMNGKELNGKQIYV 204
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 347 VTEMNGRIVATKPLYVALAQ 366
>gi|387018110|gb|AFJ51173.1| U1 small nuclear ribonucleoprotein A [Crotalus adamanteus]
Length = 281
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 26 VLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
+YI NL + + D+ + S FG I L + + + +MRGQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRNLKMRGQAFVIFKEICS 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F KPM IQ+ +
Sbjct: 65 STNALRSMQGFPFYDKPMRIQYAK 88
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|296483628|tpg|DAA25743.1| TPA: RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N G+ V LY+ +L ++ D + FG ID +++K + GR +G
Sbjct: 266 MANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEP-FGKIDNI---VLMKDSETGRSKGY 321
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM I
Sbjct: 322 GFITFSDSECARRALEQLNGFELAGRPMRI 351
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 347 VTEMNGRIVATKPLYVALAQ 366
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 259 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 312
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 313 VTEMNGRIVATKPLYV 328
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 156 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 208
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 209 KAVDEMNGKELNGKQIYV 226
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|452840135|gb|EME42073.1| hypothetical protein DOTSEDRAFT_72991 [Dothistroma septosporum
NZE10]
Length = 506
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G P ++++KNL +D +F ++ G+++ A+ ++ GR RG V F
Sbjct: 403 SGGEPNPIIHVKNLPWSTSNEDLVELFQTI-GTVEQAE----IQYEGNGRSRGSGVVRFS 457
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFGRNP 108
S A A+ GY + G+P+ + + + P
Sbjct: 458 SQPDAQTAIEKFQGYSYGGRPLGLDYAKYP 487
>gi|402217410|gb|EJT97490.1| RNA-binding domain-containing protein, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 176
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSV 80
P + LYI NL + ++ +LF G ++ ++ +M+GQAFV F +
Sbjct: 5 PNTCLYINNLNDKINKEELRAQLYALFTPY-----GKVIDVVARKGTKMKGQAFVVFGDL 59
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A A+ ++G F KPM IQ+GR + A
Sbjct: 60 AGATTAMRAMDGEFFYDKPMHIQYGRTKSHA 90
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 318 VTEMNGRIVATKPLYVALAQ 337
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ DD LFG A L VK+M + G+ +G FV+F E A
Sbjct: 161 VYIKNFGEDM--DDEHL--KDLFGKFGPA---LSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 85 RALNLVNGYVFKGKPMII 102
+A++++NG GK + +
Sbjct: 214 KAVDVMNGKELNGKQIYV 231
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 18 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 71
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 72 VTEMNGRIVATKPLYV 87
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 92 LYVKNL-DDGIDDEHLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 145
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG KP+ + +
Sbjct: 146 VKEMNGRTVATKPLYVALAQ 165
>gi|296214508|ref|XP_002753659.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Callithrix
jacchus]
Length = 439
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E A RA
Sbjct: 264 LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSDSECARRA 319
Query: 87 LNLVNGYVFKGKPM 100
++ +NG+ G+PM
Sbjct: 320 MDQLNGFELAGRPM 333
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD V S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRVAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAPSEATCA 343
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG V KP+ + + K
Sbjct: 344 VTELNGRVVGSKPLYVALAQRKEERK 369
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDKAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 347 VTEMNGRIVATKPLYVALAQ 366
>gi|115497272|ref|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus]
gi|113911797|gb|AAI22594.1| RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N G+ V LY+ +L ++ D + FG ID +++K + GR +G
Sbjct: 266 MANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEP-FGKIDNI---VLMKDSETGRSKGY 321
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
F+TF E A RAL +NG+ G+PM I
Sbjct: 322 GFITFSDSECARRALEQLNGFELAGRPMRI 351
>gi|327289313|ref|XP_003229369.1| PREDICTED: probable RNA-binding protein 23-like [Anolis
carolinensis]
Length = 445
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ + +F FG ID S ++++ G+ +G F+TF E A RA
Sbjct: 268 LYVGSLHCNITKEMLRGIF-EPFGKID---SIVLMRDQDTGQSKGYGFITFSEAECARRA 323
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 324 LEQLNGFELAGRPMRV 339
>gi|291403543|ref|XP_002718110.1| PREDICTED: RNA binding motif protein 23 isoform 3 [Oryctolagus
cuniculus]
Length = 428
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E RA
Sbjct: 251 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECGRRA 306
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 307 LEQLNGFELAGRPMRV 322
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV---E 81
S LY+ +L KDV F LF S+ S + + R G A+V + S +
Sbjct: 23 SSLYVGDLEKDVTEAQLF----ELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 82 LAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RA+ +N +V GKPM I + R+P+A K
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARK 110
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI--VKLMQE--GRMRGQAFVTFPSVEL 82
LY+KNL+ + V DD LF A SG I K+M++ G+ +G FV F S +
Sbjct: 308 LYVKNLSDEEVDDD---ALRELF-----ANSGTITSCKVMKDGSGKSKGFGFVCFTSHDE 359
Query: 83 AHR-ALNLVNGYVFKGKPMIIQFGR 106
A R + +NG + KGKP+ + +
Sbjct: 360 ATRPPVTEMNGKMVKGKPLYVALAQ 384
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|340054118|emb|CCC48412.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 773
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
P +V+YI LA DVV +D +F G I + K +Q G AF F SVE
Sbjct: 426 TPTNVVYIGQLASDVVEEDVEDMFEPFEGFISS-------KFIQSS---GIAFAHFDSVE 475
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRN 107
A A +N KG P+ I FG+N
Sbjct: 476 HARIARVALNNAHLKGSPIRISFGKN 501
>gi|322708822|gb|EFZ00399.1| pre-mRNA branch site protein p14 [Metarhizium anisopliae ARSEF 23]
Length = 116
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYSVTPEELFDLFGK-FGPIRQVRQGISTS------TKGTAFVVYEDVMDAKQA 68
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F+ + +++
Sbjct: 69 CDKLNGFNFQNRYLVV 84
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 332 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 385
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 386 VTEMNGRIVATKPLYV 401
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 229 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 281
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 282 KAVDEMNGKELNGKQIYV 299
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA++ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>gi|45184845|ref|NP_982563.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|44980454|gb|AAS50387.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|374105762|gb|AEY94673.1| FAAR022Wp [Ashbya gossypii FDAG1]
Length = 114
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 21 GNPASVLYIKNLAKDV----VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
G P S LYI NL V + + + +F + G ++++ ++RGQAFV
Sbjct: 28 GMPRSTLYISNLNDQVKISTLRTNLYLLFSTF---------GEVLRIAMSPKLRGQAFVV 78
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+V+ A+ A+ + F GKP+ IQF ++
Sbjct: 79 LSTVDEANLAMISLKDESFFGKPLRIQFSKS 109
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|403263452|ref|XP_003924046.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Saimiri
boliviensis boliviensis]
gi|197692169|dbj|BAG70048.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|197692419|dbj|BAG70173.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
Length = 225
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAF F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFAIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|384497191|gb|EIE87682.1| hypothetical protein RO3G_12393 [Rhizopus delemar RA 99-880]
Length = 267
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
+ ++ L + NL++DV D + +F + FGSI + + + +G AFV+F + E
Sbjct: 185 DDSATLRVTNLSEDVTDSDIYDLF-NRFGSIARV---YLARDRETNLCKGFAFVSFNNRE 240
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGR 106
A RA +NGY + + ++F R
Sbjct: 241 DADRAQQAINGYGYDNLILRVEFAR 265
>gi|291403541|ref|XP_002718109.1| PREDICTED: RNA binding motif protein 23 isoform 2 [Oryctolagus
cuniculus]
Length = 444
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E RA
Sbjct: 267 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECGRRA 322
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 323 LEQLNGFELAGRPMRV 338
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 342 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 395
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 396 VTEMNGRIVATKPLYV 411
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 239 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 291
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 292 KAVDEMNGKELNGKQIYV 309
>gi|310793958|gb|EFQ29419.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 110
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 10 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SGTKGTAFVVYEDVMDAKQA 62
Query: 87 LNLVNGYVFKGKPMIIQF 104
+ +NG+ F+ + +I+ +
Sbjct: 63 CDKLNGFNFQNRYLIVLY 80
>gi|336267120|ref|XP_003348326.1| hypothetical protein SMAC_02824 [Sordaria macrospora k-hell]
Length = 377
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
K + S L++ NL + D +F F + AKS +V + GR RG +V
Sbjct: 158 KTEEVADDKSTLWVGNLGWGI---DDAILFAE-FEECEGAKSARVVTDRESGRSRGFGYV 213
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
F + + A +A + +G + +G+ M + F A KP
Sbjct: 214 DFENNDQAQKAYDAKSGGLLEGREMRLDFASKDAGNKP 251
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 47 SLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
F S+ + S I + GR +G A+VTF S+E A A + +NG +G+P+ + + +
Sbjct: 289 DFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIEDAKNAFDQLNGSDLQGRPVRLDYAK 348
>gi|261203825|ref|XP_002629126.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239586911|gb|EEQ69554.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|327356167|gb|EGE85024.1| hypothetical protein BDDG_07969 [Ajellomyces dermatitidis ATCC
18188]
Length = 471
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
+ G ++ +Y++NL +D +F ++ G ++ A+ ++ GR RG V F
Sbjct: 364 SGGERSATIYVRNLPWSTCNEDLVDLFSTI-GKVERAE----IQYEPNGRSRGTGVVEFD 418
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQF 104
S E A A+N GY + G+P+ + F
Sbjct: 419 SAENAETAINKFTGYQYGGRPLGLTF 444
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S FG+I + K V G RG FV F + E A RA
Sbjct: 316 LYVKNL-DDSIADDKLRELFSEFGTITSCK----VMRDPNGISRGSGFVAFSTAEEASRA 370
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L +NG + KP+ + +
Sbjct: 371 LADMNGKMVASKPLYVALAQ 390
>gi|408396032|gb|EKJ75200.1| hypothetical protein FPSE_04591 [Fusarium pseudograminearum CS3096]
Length = 202
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 23 PASVLYIKNL-AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
P LY+ NL + + DD LF + + +K M +MRGQA +TF V+
Sbjct: 26 PNQTLYVTNLPSSKIQKDDLRTALYLLFSTYGPVLDVVALKTM---KMRGQAHITFRDVQ 82
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRN 107
A +A+ + G F G+ + IQ+ ++
Sbjct: 83 SATQAMRSLEGQSFLGRDLKIQYAKS 108
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 318 VTEMNGRIVATKPLYV 333
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L +DV + F S G+I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKF-SPAGAILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRK 95
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + FGSI +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFTPFGSITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA++ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L +DV + F S G+I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKF-SPAGAILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRK 95
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 46 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 99
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 100 VTEMNGRIVATKPLYV 115
>gi|425768949|gb|EKV07460.1| hypothetical protein PDIG_73210 [Penicillium digitatum PHI26]
gi|425776211|gb|EKV14439.1| hypothetical protein PDIP_43690 [Penicillium digitatum Pd1]
Length = 491
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 15 FKNYTAGN--PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
F +Y N ++V+Y++NL +D +F ++ G +D A+ ++ GR RG
Sbjct: 377 FTDYATSNGEKSAVIYVRNLPWSTCNEDLIDLFSTI-GKVDRAE----IQYEPNGRSRGT 431
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
V F + + A A+ +GY + G+P+ I F
Sbjct: 432 GVVQFDTPDTAETAIAKFSGYQYGGRPLGITF 463
>gi|332222976|ref|XP_003260645.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Nomascus
leucogenys]
Length = 442
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 259 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 313
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 314 SECARRALEQLNGFELAGRPM 334
>gi|358340304|dbj|GAA48227.1| U1 small nuclear ribonucleoprotein A [Clonorchis sinensis]
Length = 314
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 20 AGNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
G+P + LYI+NL + + D+ + FG I L + + +MRGQAFV
Sbjct: 47 TGSPNNTLYIRNLNEKIKRDELKKSLYAVFVQFGQI------LDIITSRTLKMRGQAFVV 100
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
F V A AL + + KPM I+F +
Sbjct: 101 FDDVNSATTALRAMQSFPLYEKPMRIEFAK 130
>gi|342877151|gb|EGU78658.1| hypothetical protein FOXB_10844 [Fusarium oxysporum Fo5176]
Length = 490
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 5 PPEEILSLPMFKNY-TAGNP-ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
PP + F ++ TAG ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 368 PPASSVPPNPFTDFATAGTERGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQ 422
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 423 YEPSGRSRGTGVVRFDSAETAETAIAKFQGYQYGGRPLNLSF 464
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P++ L+I LA + DD + F FG + + + K + GR +G +V F S +
Sbjct: 493 PSNTLFIGGLAWALTEDDIWNAFAE-FGEVTGVR---LPKEIDSGRPKGFGYVEFVSQDN 548
Query: 83 AHRALNLVNGYVFKGKPMIIQFG 105
A +AL +NG G+P+ I F
Sbjct: 549 AAKALETMNGQALGGRPIRIDFA 571
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S +G+I + K V L Q G +G FV F S + A +A
Sbjct: 319 LYIKNL-DDHIDDEKLKELFSEYGTITSCK----VMLDQHGLSKGSGFVAFSSPDEATKA 373
Query: 87 LNLVNGYVFKGKPMII 102
LN +NG + KP+ +
Sbjct: 374 LNEMNGKMKGRKPLYV 389
>gi|425770060|gb|EKV08535.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum Pd1]
gi|425771753|gb|EKV10190.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum PHI26]
Length = 188
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 13 PMFKNYTAGNPASVLYIKNL-AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
P K G P LY NL + + +D +LF + L V M+ +MRG
Sbjct: 12 PDSKAIATGAPNQTLYCTNLPDRRIQKNDLRTALYALFSTYGTV---LDVVTMKTVKMRG 68
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
QA + F V+ + +AL + G+ F GK M I + +
Sbjct: 69 QAHIVFKDVQASTQALRALQGFEFFGKQMKIVYAK 103
>gi|255075981|ref|XP_002501665.1| predicted protein [Micromonas sp. RCC299]
gi|226516929|gb|ACO62923.1| predicted protein [Micromonas sp. RCC299]
Length = 667
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G+ S +Y+KNL++DV D + G +F A +S +++ + RG FV F V
Sbjct: 27 GSQHSNVYVKNLSEDV---DELTLKG-VFDKFGAVESCCVIRDVSTNSSRGFGFVKFMQV 82
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A A+ +NG V +GK + ++F + ++A
Sbjct: 83 HQAEAAIKEMNGKVIRGKVLEVKFANSDSSA 113
>gi|119194811|ref|XP_001248009.1| hypothetical protein CIMG_01780 [Coccidioides immitis RS]
Length = 464
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 4 LPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL 63
+PP + G ++ +Y++NL +D +F ++ G ++ A+ ++
Sbjct: 345 IPPNPFTDFATY----GGERSATIYVRNLPWSTCNEDLVELFSTI-GKVERAE----IQY 395
Query: 64 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F +VE A A++ GY + G+P+ + F
Sbjct: 396 EANGRSRGTGVVQFDTVENAETAISKFTGYQYGGRPLGLTF 436
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIV 61
K P E+ + M N G+ + LY+ +L ++ D +F FG I++ +
Sbjct: 135 KSPAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIES------I 187
Query: 62 KLMQE---GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100
+LM + GR +G F+TF E A +AL +NG+ G+PM
Sbjct: 188 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 229
>gi|256083949|ref|XP_002578197.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232716|emb|CCD80071.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 328
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 6 PEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ 65
P+ + +P + G P + +YI N+ + + D+ ++F G I+ ++
Sbjct: 43 PQALTRMP----ESIGQPNNTIYINNMNEKIKCDELKKSLCAVFDQF-----GQILDIIT 93
Query: 66 EG--RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+MRGQAFV F + A AL + G+ KPM I F +
Sbjct: 94 SRTLKMRGQAFVVFDDISSASTALRSMQGFPLYEKPMRIHFAK 136
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN +V ++F +F FGS+ +A +++ EGR RG FV F + A +A
Sbjct: 227 IYVKNFDPEVTEEEFMALF-QQFGSVTSA----VIQRDDEGRSRGFGFVNFEVHDEAQKA 281
Query: 87 LNLVNGYVFKGKPMIIQFGRNPA 109
+ ++ FKGK + + + A
Sbjct: 282 VEGLHDLDFKGKKLFVSRAQKKA 304
>gi|389746772|gb|EIM87951.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 123
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRMG------NEQKTRGTAFVVFDDVMDAKN 69
Query: 86 ALNLVNGYVFKGKPMIIQF 104
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|291403539|ref|XP_002718108.1| PREDICTED: RNA binding motif protein 23 isoform 1 [Oryctolagus
cuniculus]
Length = 410
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L ++ D +F FG ID +++K GR +G F+TF E RA
Sbjct: 233 LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSDTGRSKGYGFITFSDSECGRRA 288
Query: 87 LNLVNGYVFKGKPMII 102
L +NG+ G+PM +
Sbjct: 289 LEQLNGFELAGRPMRV 304
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 341 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 394
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 395 VTEMNGRIVATKPLYV 410
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S +G+I + K V L Q G +G FV F S + A +A
Sbjct: 319 LYIKNL-DDHIDDEKLKELFSEYGTITSCK----VMLDQHGLSKGSGFVAFSSPDEATKA 373
Query: 87 LNLVNGYVFKGKPMII 102
LN +NG + KP+ +
Sbjct: 374 LNEMNGKMKGRKPLYV 389
>gi|387539272|gb|AFJ70263.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 439
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 259 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 313
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 314 SECARRALEQLNGFELAGRPM 334
>gi|387539270|gb|AFJ70262.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 423
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 243 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 297
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 298 SECARRALEQLNGFELAGRPM 318
>gi|355693134|gb|EHH27737.1| hypothetical protein EGK_18008 [Macaca mulatta]
Length = 441
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 259 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 313
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 314 SECARRALEQLNGFELAGRPM 334
>gi|313219885|emb|CBY30800.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLF---GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+YI N+++ + ++F G+I L + + RMRGQAF+ F VE A
Sbjct: 39 IYINNISEKIKIQTLLTELQAIFEQFGNI------LEIHAKKNLRMRGQAFIVFEEVESA 92
Query: 84 HRALNLVNGYVFKGKPMIIQFGR 106
+A+N + G+ F K M I F +
Sbjct: 93 QKAVNSMQGFPFHDKKMRIAFAK 115
>gi|384497441|gb|EIE87932.1| hypothetical protein RO3G_12643 [Rhizopus delemar RA 99-880]
Length = 291
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81
+ ++ L + NL++DV D + +F + FG+I + + + +G AFV+F S E
Sbjct: 209 DDSATLRVTNLSEDVTDSDIYDLF-NRFGNIARV---YLARDRETNLCKGFAFVSFNSRE 264
Query: 82 LAHRALNLVNGYVFKGKPMIIQFGRN 107
A RA +NGY + + ++F R+
Sbjct: 265 DADRAQQAINGYGYDNLILRVEFARS 290
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S LY+KNL D V D+ S +G++ + K V + +G RG FV + S E A
Sbjct: 341 SNLYLKNL-DDSVNDEKLKEMFSEYGNVTSCK----VMMNSQGLSRGFGFVAYSSPEEAS 395
Query: 85 RALNLVNGYVFKGKPMIIQFGR 106
RAL+ +NG + KP+ + F +
Sbjct: 396 RALSEMNGKMIGRKPLYVAFAQ 417
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNL K++ D+ FG +G I +A +V Q G R FV F S E A A
Sbjct: 240 VYVKNLPKEITDDELKKTFGK-YGDISSA----VVMKDQSGNSRSFGFVNFESPEAAAVA 294
Query: 87 LNLVNG 92
+ +NG
Sbjct: 295 VEKMNG 300
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGINDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ DD LFG AA L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDM--DDERL--KDLFGKFGAA---LSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNLA+ DD FG +G I +A +V +G+ +G FV F + + A RA
Sbjct: 217 VYVKNLAESTTDDDLKNAFGE-YGKITSA----VVMKDGDGKSKGFGFVNFENADDAARA 271
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F K +
Sbjct: 272 VESLNGHKFDDKEWYV 287
>gi|212543363|ref|XP_002151836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
gi|210066743|gb|EEA20836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
Length = 177
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80
G P LYIKNL + D +LF + L V +++ +MRGQA + + +
Sbjct: 16 GAPNQTLYIKNLPDKIKKPDLRMALYTLFSTYGPV---LDVVVLKTAKMRGQAHIVYRDI 72
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGR 106
+ + +A+ + G+ F GK + I + +
Sbjct: 73 QASTQAMRALQGFDFFGKELNIVYAK 98
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
LY+KNL D + DD S +G I + K+M++ G +G FV F + E A
Sbjct: 323 LYMKNL-DDSIGDDQLCELFSNYGKITS------CKIMRDANGVSKGSGFVAFSTREEAS 375
Query: 85 RALNLVNGYVFKGKPMIIQFGR 106
+AL +NG + GKP+ + F +
Sbjct: 376 QALTEMNGKMISGKPLYVAFAQ 397
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ +D +FG+ +G+I +A ++ + +G+ R F+ F S + A RA
Sbjct: 220 VFVKNLSESTTKEDLVKIFGA-YGNITSA----VIMVGMDGKSRCFGFINFKSPDDAARA 274
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 275 VEELNGKKINDKEWYV 290
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
LY+KNL D + DD S +G I + K+M++ G +G FV F + E A
Sbjct: 323 LYMKNL-DDSIGDDQLCELFSNYGKITS------CKIMRDANGVSKGSGFVAFSTREEAS 375
Query: 85 RALNLVNGYVFKGKPMIIQFGR 106
+AL +NG + GKP+ + F +
Sbjct: 376 QALTEMNGKMISGKPLYVAFAQ 397
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ +D +FG+ +G+I +A ++ + +G+ R F+ F S + A RA
Sbjct: 220 VFVKNLSESTTKEDLVKIFGA-YGNITSA----VIMVGMDGKSRCFGFINFKSPDDAARA 274
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 275 VEELNGKKINDKEWYV 290
>gi|431907193|gb|ELK11259.1| Putative RNA-binding protein 23 [Pteropus alecto]
Length = 914
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 239 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSE 293
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 294 SECARRALEQLNGFELAGRPM 314
>gi|409049784|gb|EKM59261.1| hypothetical protein PHACADRAFT_205445 [Phanerochaete carnosa
HHB-10118-sp]
Length = 123
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRVG------SEQKTRGTAFVVFDDVMDAKN 69
Query: 86 ALNLVNGYVFKGKPMIIQF 104
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|332222974|ref|XP_003260644.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Nomascus
leucogenys]
Length = 426
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 243 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 297
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 298 SECARRALEQLNGFELAGRPM 318
>gi|303310955|ref|XP_003065489.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105151|gb|EER23344.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 439
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 4 LPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL 63
+PP + G ++ +Y++NL +D +F ++ G ++ A+ ++
Sbjct: 320 IPPNPFTDFATY----GGERSATIYVRNLPWSTCNEDLVELFSTI-GKVERAE----IQY 370
Query: 64 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
GR RG V F +VE A A++ GY + G+P+ + F
Sbjct: 371 EANGRSRGTGVVQFDTVENAETAISKFTGYQYGGRPLGLTF 411
>gi|440467309|gb|ELQ36539.1| RNP domain-containing protein [Magnaporthe oryzae Y34]
gi|440478902|gb|ELQ59700.1| RNP domain-containing protein [Magnaporthe oryzae P131]
Length = 500
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 4 LPPEEILSLPMFKNYTAG-NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+PP P N TAG + + +Y++NL +D +F ++ G ++ A+ ++
Sbjct: 383 VPPN-----PFTDNATAGADRSETIYVRNLPWSTSNEDLVELFTTI-GKVEQAE----IQ 432
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR--NPAAA 111
GR RG V F + E A ++ GY + G+P+ + F + NPA
Sbjct: 433 YEPSGRSRGSGVVRFDNAETAETSIAKFQGYQYGGRPLNLSFVKYVNPAGG 483
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 271 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 324
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 325 VTEMNGRIVATKPLYV 340
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 168 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 220
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 221 KAVDEMNGKELNGKQIYV 238
>gi|313232389|emb|CBY24056.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLF---GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
+YI N+++ + ++F G+I L + + RMRGQAF+ F VE A
Sbjct: 39 IYINNISEKIKIQTLLTELQAIFEQFGNI------LEIHAKKNLRMRGQAFIVFEEVESA 92
Query: 84 HRALNLVNGYVFKGKPMIIQFGR 106
+A+N + G+ F K M I F +
Sbjct: 93 QKAVNSMQGFPFHDKKMRIAFAK 115
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ SL+G+I +AK V +EGR +G FV F S A A
Sbjct: 289 LYVKNL-DDSIDDERLRKEFSLYGTITSAK----VMTDEEGRSKGFGFVCFISPNEATCA 343
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG V KP+ + + K
Sbjct: 344 VTELNGRVIGSKPLYVALAQRKEERK 369
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDKAIDNKAIYDTF-SAFGNILSCK----VATDEKGTSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|167518960|ref|XP_001743820.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777782|gb|EDQ91398.1| predicted protein [Monosiga brevicollis MX1]
Length = 213
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P+ +YIKNL + ++ + S FG I L V ++ +MRGQAF+ F
Sbjct: 5 PSPTIYIKNLNDRIQKEELRRTLYGLFSQFGGI------LDVVALKTNKMRGQAFIVFKD 58
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A AL + + KPM IQ+ +
Sbjct: 59 VGCASNALRSMQKFPLFDKPMSIQYAK 85
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 347 VTEMNGRIVATKPLYV 362
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
LY+KNL D + DD S +G I + K+M++ G +G FV F + E A
Sbjct: 322 LYMKNL-DDSIGDDQLCELFSNYGKITS------CKIMRDANGVSKGSGFVAFSTREEAS 374
Query: 85 RALNLVNGYVFKGKPMIIQFGR 106
+AL +NG + GKP+ + F +
Sbjct: 375 QALTEMNGKMISGKPLYVAFAQ 396
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+++KNL++ +D +FG+ +G+I +A ++ + +G+ R F+ F S + A RA
Sbjct: 219 VFVKNLSESTTKEDLVKIFGA-YGNITSA----VIMVGMDGKSRCFGFINFKSPDDAARA 273
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG K +
Sbjct: 274 VEELNGKKINDKEWYV 289
>gi|225434417|ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
gi|297745807|emb|CBI15863.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIKNL + V ++ + S +G I L V ++ ++RGQA+V F
Sbjct: 8 PNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRI------LDVVALKTPKLRGQAWVVFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRVQYAK 88
>gi|154300366|ref|XP_001550599.1| hypothetical protein BC1G_11372 [Botryotinia fuckeliana B05.10]
Length = 493
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 13 PMFKNYTAGNPAS-VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
P + TAG S ++Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 380 PFTDHATAGTERSEIIYVRNLPWSTSNEDLVELFTTI-GKVEQAE----IQYEPNGRSRG 434
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104
V F S E A A+ +GY + G+P+ + F
Sbjct: 435 TGVVRFDSAENADTAIEKFSGYQYGGRPLGLSF 467
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK----LMQEGRMRGQAFVTFPSVEL 82
+Y+ NL V D +F AA++G +V+ + +GR +G V F S +
Sbjct: 231 IYVSNLPYTVGWQDLKDLFRG------AARNGAVVRADVHVGPDGRPKGSGIVAFESPDD 284
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A A+ NGY ++G+P+ ++ R
Sbjct: 285 ARNAIQQFNGYDWQGRPLEVREDR 308
>gi|388490330|ref|NP_001253303.1| probable RNA-binding protein 23 [Macaca mulatta]
gi|380814244|gb|AFE78996.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
gi|384947950|gb|AFI37580.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 259 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 313
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 314 SECARRALEQLNGFELAGRPM 334
>gi|290992905|ref|XP_002679074.1| predicted protein [Naegleria gruberi]
gi|284092689|gb|EFC46330.1| predicted protein [Naegleria gruberi]
Length = 212
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
+ RGQAF+ F V A A +NGYVF KPM I F ++ + A
Sbjct: 60 KTRGQAFIVFKDVATATAAKKKLNGYVFHDKPMHINFAKSKSDA 103
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P+SVL+I+NL +DV + +LF + D K ++L+ E +G AFV + ++E
Sbjct: 136 PSSVLFIENLPRDVEKSSE--LLETLFNNYDGYKK---LRLVGE---KGVAFVEYETIEQ 187
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A A + + K +PM I F +
Sbjct: 188 ATSAREGLQSWKIKQQPMRISFKK 211
>gi|242786438|ref|XP_002480805.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720952|gb|EED20371.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
Length = 180
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 21 GNPASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
G P LYIKNL + D ++ S +G + L V +M+ +MRGQA + +
Sbjct: 19 GAPNQTLYIKNLPDKIRKPDLRMALYMLFSTYGPV------LDVVVMRTAKMRGQAHIVY 72
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFGR 106
++ + +A+ + G+ F G+ + I + +
Sbjct: 73 RDIQASTQAMRALQGFDFFGRELAIVYAK 101
>gi|154341356|ref|XP_001566631.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063954|emb|CAM40145.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 210
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
L + LA+DV D +F + FG +D A+ I+ Q RG FV F + A +A
Sbjct: 115 LIVNYLAQDVTSADLHTLF-ARFGPLDGAR---IIFDRQTSMPRGYGFVYFRYPDSAKQA 170
Query: 87 LNLVNGYVFKGKPMIIQFGRNP 108
++ +NGY F GK + + + NP
Sbjct: 171 VDSMNGYEFHGKRLKVGYSTNP 192
>gi|378726083|gb|EHY52542.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 200
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 20 AGNPASVLYIKNLAKDVVPDDF----FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFV 75
AG P LY+KNL + + ++ + +F + +D + + K MRGQA +
Sbjct: 18 AGTPNQTLYVKNLNEKINKNELKRALYMLFSTYGPVLDIVTTRVGSKCQN---MRGQAHI 74
Query: 76 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
+ ++ + +A+ + G+ GK M+I +G+
Sbjct: 75 VYRDIQTSTQAMRALQGFDLFGKEMVIVYGK 105
>gi|297838525|ref|XP_002887144.1| hypothetical protein ARALYDRAFT_475881 [Arabidopsis lyrata subsp.
lyrata]
gi|297332985|gb|EFH63403.1| hypothetical protein ARALYDRAFT_475881 [Arabidopsis lyrata subsp.
lyrata]
Length = 519
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 12 LPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRG 71
P GN L I NL V +F ++G + + + R
Sbjct: 156 FPQLNAVPEGNNQGSLVIMNLEPTVSSTTLRHIF-QVYGEVKQVR--------ETPYKRE 206
Query: 72 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
Q FV F V A +AL ++NG V GKPM+IQF R
Sbjct: 207 QRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 241
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ +DV ++F +F +G I +A + + + G+ RG FV F E A A
Sbjct: 241 IYVKNVEQDVTDEEFRGLF-EKYGEITSA---TLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 87 LNLVNGYVFKGKPMII 102
+ +N Y KG+ + +
Sbjct: 297 VEALNEYELKGQKLYV 312
>gi|380814242|gb|AFE78995.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
gi|383419605|gb|AFH33016.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
+G P LY+ +L ++ D +F FG ID +++K GR +G F+TF
Sbjct: 243 SGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGYGFITFSD 297
Query: 80 VELAHRALNLVNGYVFKGKPM 100
E A RAL +NG+ G+PM
Sbjct: 298 SECARRALEQLNGFELAGRPM 318
>gi|209364023|ref|YP_001424629.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
gi|207081956|gb|ABS78255.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
Length = 112
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ +L+ DV D+ FG +G I+ AK ++ + GR +G AF+T+ + + A A
Sbjct: 11 IYVGSLSYDVTADELQSFFGQ-YGEIEEAK---LIMDRETGRSKGFAFITYGTQDAAQEA 66
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
++ NG +G+ + + R
Sbjct: 67 VSKANGIDLQGRKIRVNIAR 86
>gi|147902061|ref|NP_001088194.1| small nuclear ribonucleoprotein polypeptide B [Xenopus laevis]
gi|54035240|gb|AAH84107.1| LOC495019 protein [Xenopus laevis]
Length = 223
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI NL V + +LF + +K M +MRGQ FV F +
Sbjct: 5 PNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTM---KMRGQGFVIFKELSS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A AL + G+ F KPM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAK 85
>gi|402226279|gb|EJU06339.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 123
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL + +D + +FG +G+I ++L E + RG AFV + V A
Sbjct: 18 ILFVKNLNYTITGEDLYDLFGR-YGTIRQ------IRLGNEQKTRGTAFVVYDDVMDAKN 70
Query: 86 ALNLVNGYVFKGKPMIIQFG---RNPAAAK 112
AL+ +NG+ + + +++ + R AAA+
Sbjct: 71 ALDHLNGFHLQERYIVVLYHMPTRQEAAAQ 100
>gi|255945691|ref|XP_002563613.1| Pc20g11240 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588348|emb|CAP86453.1| Pc20g11240 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 356
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P S LY+ NL DV +D F A ++ LIV + G +G +VTF +VE
Sbjct: 119 PKSTLYVGNLFFDVTAEDL----RKHFEKYGAVENALIVHDAR-GLSKGFGYVTFSTVEE 173
Query: 83 AHRALNLVNGYVFKGKPMIIQFG----RNPAAAKPS 114
A +A+ +G + +G+ +++QF R A KPS
Sbjct: 174 ATQAITQQHGGILEGREVVVQFSNTTYRAMAENKPS 209
>gi|153208628|ref|ZP_01946885.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|120575889|gb|EAX32513.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
Length = 103
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ +L+ DV D+ FG +G I+ AK ++ + GR +G AF+T+ + + A A
Sbjct: 6 IYVGSLSYDVTADELQSFFGQ-YGEIEEAK---LIMDRETGRSKGFAFITYGTQDAAQEA 61
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
++ NG +G+ + + R
Sbjct: 62 VSKANGIDLQGRKIRVNIAR 81
>gi|165919016|ref|ZP_02219102.1| RNA-binding protein [Coxiella burnetii Q321]
gi|165917271|gb|EDR35875.1| RNA-binding protein [Coxiella burnetii Q321]
Length = 107
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ +L+ DV D+ FG +G I+ AK ++ + GR +G AF+T+ + + A A
Sbjct: 6 IYVGSLSYDVTADELQSFFGQ-YGEIEEAK---LIMDRETGRSKGFAFITYGTQDAAQEA 61
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
++ NG +G+ + + R
Sbjct: 62 VSKANGIDLQGRKIRVNIAR 81
>gi|161830439|ref|YP_001597044.1| RNA-binding protein [Coxiella burnetii RSA 331]
gi|161762306|gb|ABX77948.1| RNA-binding protein [Coxiella burnetii RSA 331]
Length = 107
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ +L+ DV D+ FG +G I+ AK ++ + GR +G AF+T+ + + A A
Sbjct: 6 IYVGSLSYDVTADELQSFFGQ-YGEIEEAK---LIMDRETGRSKGFAFITYGTQDAAQEA 61
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
++ NG +G+ + + R
Sbjct: 62 VSKANGIDLQGRKIRVNIAR 81
>gi|409991967|ref|ZP_11275186.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|409937161|gb|EKN78606.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 93
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+ NL+ DV PDD F +G++ K +I + GR RG FV S + A
Sbjct: 3 IYVGNLSYDVTPDDLSAAFAE-YGTV---KRSMIPTDRETGRSRGFGFVEMSSEDEEKVA 58
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
++ ++G +KG+ + + R
Sbjct: 59 IDALDGAEWKGRSLKVNKAR 78
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + DD S FG+I + K V G RG FV F + E A RA
Sbjct: 302 LYIKNL-DDSIGDDKLKELFSEFGTITSCK----VMRDPSGISRGSGFVAFSTSEEASRA 356
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L +NG + KP+ + +
Sbjct: 357 LTEMNGKMVVSKPLYVALAQ 376
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + DD S FG+I + K V G RG FV F + E A RA
Sbjct: 302 LYIKNL-DDSIGDDKLKELFSEFGTITSCK----VMRDPSGISRGSGFVAFSTSEEASRA 356
Query: 87 LNLVNGYVFKGKPMIIQFGR 106
L +NG + KP+ + +
Sbjct: 357 LTEMNGKMVVSKPLYVALAQ 376
>gi|242208894|ref|XP_002470296.1| predicted protein [Postia placenta Mad-698-R]
gi|220730603|gb|EED84457.1| predicted protein [Postia placenta Mad-698-R]
Length = 123
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRIG------NEQKTRGTAFVVFDDVMDAKN 69
Query: 86 ALNLVNGYVFKGKPMIIQF 104
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G A V F S E
Sbjct: 300 PGVPIYIKNLDETIDDEKLKEEFSS-FGSISRAKV-----MMEMGQGKGFAVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG V KP+ + G+
Sbjct: 354 ATKAVDEMNGPVLGSKPLSVTLGQ 377
>gi|350630544|gb|EHA18916.1| hypothetical protein ASPNIDRAFT_42727 [Aspergillus niger ATCC 1015]
Length = 249
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P+ N T N + + L + + ++ F +G++ + AK+ L + +GQ
Sbjct: 9 PIPPNCTVRNLEERIKVDQLKEAL--EEIFSEYGTVLEIV--AKTNL--------KAKGQ 56
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
AFV F +VE A RA++ +NG+ KPM++ + +
Sbjct: 57 AFVVFDTVEAATRAIDEINGFELFDKPMVLDYAKT 91
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,838,367,959
Number of Sequences: 23463169
Number of extensions: 66002743
Number of successful extensions: 144132
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 2050
Number of HSP's that attempted gapping in prelim test: 139777
Number of HSP's gapped (non-prelim): 6119
length of query: 114
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 33
effective length of database: 6,163,711,382
effective search space: 203402475606
effective search space used: 203402475606
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)