BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033648
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96IZ5|RBM41_HUMAN RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE=1 SV=2
Length = 413
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI +PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 343 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>sp|Q3MHP0|RBM40_BOVIN RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1
Length = 516
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D F+FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 60 IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
+ L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 55 VRDLSDKGRLKHTAFATFPNEKTAVKALTRLHQLKLLGHTLVVEFAKE 102
>sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1
Length = 413
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 3 KLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK 62
+L EEI ++PMF +Y G P VLY+KNL+ V D SLF K I
Sbjct: 287 RLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARFQEKKGPPIQF 342
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 343 RMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>sp|Q5R6C7|RBM40_PONAB RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1
Length = 517
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKE 102
>sp|Q4G055|RBM40_RAT RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=2 SV=2
Length = 515
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 396 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 455
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 456 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 502
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q3UZ01|RBM40_MOUSE RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2
Length = 514
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLA+ V D F+FG S + +
Sbjct: 395 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 454
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 113
++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R +A+P
Sbjct: 455 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR---SARP 504
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q96LT9|RBM40_HUMAN RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1
Length = 517
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLI 60
G++ EE+ +L +F++Y G P +Y+KNLAK V D ++FG S + +
Sbjct: 397 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
Query: 61 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 63 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKE 102
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1
Length = 249
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P K + P+ LYI+N+ + + + LFGS + V+ + RMRGQ
Sbjct: 14 PSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKV---IDVQARKTLRMRGQ 70
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107
AFV F ++E A RAL + GY GKPM+IQ+ ++
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRSLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A AL + G+ F KPM IQ+ +
Sbjct: 62 VSSATNALRSMQGFPFYDKPMRIQYAKT 89
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHR 85
+YI NL + + D+ ++F L+ ++M +MRGQAFV F V A
Sbjct: 17 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIM---KMRGQAFVIFKEVTSATN 73
Query: 86 ALNLVNGYVFKGKPMIIQFGRN 107
AL + G+ F KPM IQ+ +
Sbjct: 74 ALRSMQGFPFYDKPMRIQYAKT 95
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV + F S G + + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKF-SPAGPVLSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRK 95
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN ++V + +F S FG L VK+M++ G+ +G FV++ E A+
Sbjct: 193 VYIKNFGEEVDDESLKELF-SQFGKT------LSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 85 RALNLVNGYVFKGKPMIIQFGR 106
+A+ +NG GK II GR
Sbjct: 246 KAVEEMNGKEISGK--IIFVGR 265
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
AFV F + E A +A+ +NG + + + +
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P + +YI NL + + D+ + S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQI------LDILVSRNLKMRGQAFVIFKE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
A AL + G+ F KPM IQ+ +
Sbjct: 62 TSSATNALRSMQGFPFYDKPMRIQYSKT 89
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2
Length = 115
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
S+L+IKNL+ + ++ + +FG +G + + G V+ RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGR-YGPVRQIRLGNTVQ------TRGTAFVVYENVQDAR 64
Query: 85 RALNLVNGYVFKGKPMIIQFGRNPAAAK 112
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSV 80
P LY+ NL + + LF +K G I++++ + +MRGQAF+ F +
Sbjct: 10 PNQTLYVNNLYEKISKKKLIEQLLLLF-----SKYGPILEIVGSKSLKMRGQAFIVFKDI 64
Query: 81 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111
A AL +NG+ F +PM IQ+ ++ + A
Sbjct: 65 TSASNALREMNGFNFLDRPMKIQYCKSKSDA 95
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 MFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
M N GN + LY+ +L ++ D +F FG ID +++K GR +G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDNI---VLMKDSDTGRSKGY 306
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPM 100
F+TF E A RAL +NG+ G+PM
Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPM 334
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KNLA+ DD FG +G I +A +V EG+ +G FV F + + A RA
Sbjct: 217 VYVKNLAESTTDDDLKNAFGE-YGKITSA----VVMKDGEGKSKGFGFVNFENADDAARA 271
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG+ F K +
Sbjct: 272 VESLNGHKFDDKEWYV 287
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84
+ LY+ +L +V F FG + G++ + + + + R G +V F + + A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQM-GTVVTVR---VCRDLVTRRSLGYGYVNFTNPQDAA 91
Query: 85 RALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
RA+ +N GKP+ + + R+P+ +
Sbjct: 92 RAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD + S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG V KP+ + + K
Sbjct: 344 VTELNGRVVGSKPLYVALAQRKEERK 369
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+ +L +DV F F S S + + + R G A+V F A RA
Sbjct: 4 LYVGDLPQDVNESGLF----DKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERA 59
Query: 87 LNLVNGYVFKGKPMIIQFG-RNPA 109
L+ +N + + KP+ I + R+P+
Sbjct: 60 LDTMNFDLVRNKPIRIMWSQRDPS 83
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ +V ++F +F + FG + ++ + QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNINNEVTDEEFRELF-AKFGEVTSSS----LARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 87 LNLVNGYVFKGKPMII 102
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YI+NL + + ++ + S FG I L V ++ ++RGQA+VTF
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGR 106
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAAGHAVRQMQNFPFYDKPMRLQYAK 88
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN +++KNL K + + S FG+I + + E +G
Sbjct: 91 PSLRKSGVGN----IFVKNLDKSINNKALYDTV-SAFGNILSCNV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA+ +NG + G+ + +
Sbjct: 141 GFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78
T P + LY+ +L DV + F S G I + + + L+ G A+V F
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKF-SPAGPILSIR--ICRDLITSGSS-NYAYVNFQ 60
Query: 79 SVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
+ A AL+ +N V KGKP+ I + R+P+ K
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L D + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM--QEGRMRGQAFVTFPSVELAH 84
+YIKN +D+ + +FG FG L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ + FGSI +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFTPFGSITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN +D+ DD FG AA L VK+M + G+ RG FV+F E A
Sbjct: 193 VYIKNFGEDM--DDERL--KEWFGQYGAA---LSVKVMTDDHGKSRGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK + +
Sbjct: 246 KAVDDMNGKDLNGKAIFV 263
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L DV + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA++ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG V KP+ + G+
Sbjct: 354 ATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YIKN+ +DV ++F +F FG I +A + QEG+ RG FV F + E A A
Sbjct: 232 VYIKNIDQDVTEEEFRELF-EKFGEITSA----TLSRDQEGKSRGFGFVNFSTHESAQAA 286
Query: 87 LNLVN 91
++ +N
Sbjct: 287 VDEMN 291
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 5 PPEEILSLPMFKNYTAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL 63
P E+ ++ A P S LY+ L V + LF SI S + +
Sbjct: 28 PAPEVTAVESTTAPNASQPHSASLYVGELDPSVTEAMLY----ELFSSIGQVASIRVCRD 83
Query: 64 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
R G A+V + + RAL +N + KGKP I + R+PA K
Sbjct: 84 AVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRK 133
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ ++ ++F +FG +G I +A +++ EG++RG FV F A +A
Sbjct: 221 VYVKNIDQETSQEEFEELFGK-YGKITSA----VLEKDSEGKLRGFGFVNFEDHAAAAKA 275
Query: 87 LNLVNGYVFKGKPMII 102
++ +N FKG+ + +
Sbjct: 276 VDELNELEFKGQKLYV 291
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YIKN+ ++V ++F +F FG I +A + QEG+ RG FV F + + A A
Sbjct: 235 VYIKNIDQEVTDEEFRKMF-EKFGEITSA----TLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 87 LNLVNGYVFKGKPMII 102
++ +N KG+ + +
Sbjct: 290 VDEMNDKEIKGQKLYV 305
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 19 TAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
+A P S LY+ L V + LF SI S + + R G A+V +
Sbjct: 45 SANQPHSASLYVGELDPSVTEAMLY----ELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
+ RAL +N + KGKP I + R+PA K
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRK 136
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YIKN+ ++V ++F +F FG I +A + QEG+ RG FV F + + A A
Sbjct: 235 VYIKNIDQEVTDEEFRKMF-EKFGEITSA----TLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 87 LNLVNGYVFKGKPMII 102
++ +N KG+ + +
Sbjct: 290 VDEMNDKEIKGQKLYV 305
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 19 TAGNPASV-LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTF 77
+A P S LY+ L V + LF SI S + + R G A+V +
Sbjct: 45 SASQPHSASLYVGELDPSVTEAMLY----ELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 78 PSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
+ RAL +N + KGKP I + R+PA K
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRK 136
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 83 AHRALNLVNGYVFKGKPMIIQFGR 106
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM---QEGRMRGQAFVTFPSVELA 83
LY+ +L ++ D +F FG I++ ++LM + GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGRIES------IQLMMDSETGRSKGYGFITFSDSECA 304
Query: 84 HRALNLVNGYVFKGKPMII 102
+AL +NG+ G+PM +
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM---QEGRMRGQAFVTFPSVELA 83
LY+ +L ++ D +F FG I++ ++LM + GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGRIES------IQLMMDSETGRSKGYGFITFSDSECA 304
Query: 84 HRALNLVNGYVFKGKPMII 102
+AL +NG+ G+PM +
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM---QEGRMRGQAFVTFPSVELA 83
LY+ +L ++ D +F FG I++ ++LM + GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGRIES------IQLMMDSETGRSKGYGFITFSDSECA 304
Query: 84 HRALNLVNGYVFKGKPMII 102
+AL +NG+ G+PM +
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE-GRMRGQAFVTFPSVELAHR 85
LYIKNL D + D+ S FGSI VK+MQE G+ +G + F S E A +
Sbjct: 295 LYIKNL-DDTIDDEKLRNEFSSFGSISR------VKVMQEEGQSKGFGLICFSSPEDATK 347
Query: 86 ALNLVNGYVFKGKPMIIQFGR 106
A+ +NG + KP+ I +
Sbjct: 348 AMTEMNGRILGSKPLSIALAQ 368
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN D+ + VF S +G L VK+M + G+ +G FV+F S E A
Sbjct: 192 VYIKNFGGDMDDERLKDVF-SKYGKT------LSVKVMTDSSGKSKGFGFVSFDSHEAAK 244
Query: 85 RALNLVNGYVFKGKPMII 102
+A+ +NG G+ + +
Sbjct: 245 KAVEEMNGRDINGQLIFV 262
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGR-MRGQAFVTFPSVELAHR 85
++IKNL K + + F S FG I L K+M + + +G AFV F + A R
Sbjct: 100 VFIKNLDKSIDNKTLYEHF-SAFGKI------LSSKVMSDDQGSKGYAFVHFQNQSAADR 152
Query: 86 ALNLVNGYVFKG 97
A+ +NG + KG
Sbjct: 153 AIEEMNGKLLKG 164
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVT 76
N A + LY+ +L DV D F F ++ S I + R G A+V
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLF----RKFSTVGPVLSIRICRDQVTRRSLGYAYVN 57
Query: 77 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPS 114
F + A +AL+ +N + KGK + + + + A + S
Sbjct: 58 FLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 95
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YIKNL ++ +F +FG FG I + L + Q + RG FV + + E A +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQ-FGEI----TSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 87 LNLVNGYVFKGKPMII 102
++ +N +KGK + +
Sbjct: 318 VDELNDKEYKGKKLYV 333
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
++ LY+ L V F LF SI S + + R G A+V F ++E
Sbjct: 79 SASLYVGELDPSVTEAMLF----ELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 84 HRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
+AL+ +N + KG+P I + R+P+ K
Sbjct: 135 EKALDELNYTLIKGRPCRIMWSQRDPSLRK 164
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL + F S FG I + K V + + G +G
Sbjct: 160 PSLRKMGTGN----VFIKNLDPAIDNKALHDTF-SAFGKILSCK----VAVDELGNAKGY 210
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F SVE A+ A+ VNG + K + +
Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + D+ FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFLPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAH 84
+YIKN D+ + +FG +G L VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGDDMNDERLKEMFGK-YGP------ALSVKVMTDDNGKSKGFGFVSFERHEDAQ 245
Query: 85 RALNLVNGYVFKGKPMII 102
+A++ +NG GK M +
Sbjct: 246 KAVDEMNGKDMNGKSMFV 263
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVEL 82
P + LY+ +L +DV + F S G I + + + + M R G A+V F
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKF-SPAGPILSIR---VCRDMITRRSLGYAYVNFQQPAD 64
Query: 83 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRK 95
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 13 PMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ 72
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 73 AFVTFPSVELAHRALNLVNGYVFKGKPMII 102
FV F + E A RA++ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 23 PASVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
P +YIK++ + + ++ + S FG + L V ++ ++RGQA+V F
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRL------LDVVALKTPKLRGQAWVVFTE 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFGRN 107
V A A+ + + F KPM IQ+ ++
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKS 89
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+YIKNL +++ ++F +F FG I +A + QEG+ RG FV + + + A A
Sbjct: 231 VYIKNLDQEISEEEFRQMF-EKFGEITSA----TLSRDQEGKSRGFGFVNYSTHDSAQAA 285
Query: 87 LNLVNGYVFKGKPMII 102
++ +N KG+ + +
Sbjct: 286 VDEMNDKEVKGQKLYV 301
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELA 83
++ LY+ L V + LF SI S + + R G A+V + +
Sbjct: 47 SASLYVGELDPSVTEAMLY----ELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 84 HRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
RAL +N + KGKP I + R+PA K
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQRDPALRK 132
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
LY+KNL D + DD S +G+I +AK + + G +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDDRLRKEFSPYGTITSAKV-----MTEGGHSKGFGFVCFSSPEEATKA 349
Query: 87 LNLVNGYVFKGKPMIIQFGRNPAAAK 112
+ +NG + KP+ + + K
Sbjct: 350 VTEMNGRIVSTKPLYVALAQRKEERK 375
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79
AG P + LY+ +L DV + F S G I + + + + + R G A++ F
Sbjct: 6 AGYPLASLYVGDLHPDVTEAMLYEKF-SPAGPIMSIR---VCRDIATRRSLGYAYINFQQ 61
Query: 80 VELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 112
A RAL+ +N V KG+P+ I + R+P K
Sbjct: 62 PADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK 95
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
++IKNL + + + F S FG+I + K + E RG FV F + E A+RA
Sbjct: 101 VFIKNLDESIDNKALYDTF-SAFGNILSCKV-----VCDEHGSRGYGFVHFETQEAANRA 154
Query: 87 LNLVNGYVFKGKPMII 102
+ +NG + + + +
Sbjct: 155 IQTMNGMLLNDRKVFV 170
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRA 86
+Y+KN+ +V D+F +F +G + S + + + G+ RG FV F S E A +A
Sbjct: 244 IYVKNINPEVTDDEFRTLF-EKYGDV---TSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 87 LNLVNGYVFKGKPMII 102
+ +N F G+ + +
Sbjct: 300 VQELNEKEFHGQNLYV 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,506,857
Number of Sequences: 539616
Number of extensions: 1584579
Number of successful extensions: 3973
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 3606
Number of HSP's gapped (non-prelim): 442
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)