Query 033648
Match_columns 114
No_of_seqs 118 out of 1043
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 6.5E-21 1.4E-25 117.9 11.7 86 21-110 31-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 9.6E-20 2.1E-24 126.6 10.9 83 24-110 269-351 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.5E-19 1.2E-23 122.8 10.5 84 23-110 2-85 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 1.2E-18 2.5E-23 121.0 10.5 85 21-109 104-188 (346)
5 PF00076 RRM_1: RNA recognitio 99.8 6.6E-18 1.4E-22 92.0 9.1 70 27-101 1-70 (70)
6 KOG0122 Translation initiation 99.8 4E-18 8.7E-23 110.9 8.7 82 23-108 188-269 (270)
7 TIGR01659 sex-lethal sex-letha 99.7 5.4E-17 1.2E-21 112.8 10.5 84 23-110 192-277 (346)
8 TIGR01645 half-pint poly-U bin 99.7 8.9E-17 1.9E-21 117.7 9.5 81 22-106 105-185 (612)
9 TIGR01645 half-pint poly-U bin 99.7 1.2E-16 2.7E-21 116.9 10.2 84 23-110 203-286 (612)
10 KOG0146 RNA-binding protein ET 99.7 2.5E-17 5.5E-22 108.8 5.4 89 21-113 282-370 (371)
11 TIGR01628 PABP-1234 polyadenyl 99.7 2.1E-16 4.6E-21 115.9 10.2 82 25-110 1-82 (562)
12 PF14259 RRM_6: RNA recognitio 99.7 2.9E-16 6.4E-21 85.8 8.3 70 27-101 1-70 (70)
13 TIGR01622 SF-CC1 splicing fact 99.7 4.7E-16 1E-20 111.5 10.2 80 23-106 185-264 (457)
14 KOG0111 Cyclophilin-type pepti 99.7 5.1E-17 1.1E-21 104.7 4.6 87 21-111 7-93 (298)
15 TIGR01628 PABP-1234 polyadenyl 99.7 4.5E-16 9.7E-21 114.2 10.1 83 22-109 283-365 (562)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 8.8E-16 1.9E-20 111.3 11.5 83 22-108 293-375 (509)
17 KOG0121 Nuclear cap-binding pr 99.7 1.7E-16 3.8E-21 94.4 6.3 81 22-106 34-114 (153)
18 KOG0107 Alternative splicing f 99.7 5.7E-16 1.2E-20 96.5 8.4 80 21-109 7-86 (195)
19 KOG0125 Ataxin 2-binding prote 99.7 4.8E-16 1E-20 104.9 7.8 79 24-108 96-174 (376)
20 PLN03120 nucleic acid binding 99.6 2.2E-15 4.8E-20 100.0 9.4 75 24-106 4-78 (260)
21 KOG0148 Apoptosis-promoting RN 99.6 1.9E-15 4.2E-20 99.8 8.9 81 21-111 161-241 (321)
22 KOG4207 Predicted splicing fac 99.6 7.9E-16 1.7E-20 98.3 6.8 82 22-107 11-92 (256)
23 KOG0149 Predicted RNA-binding 99.6 7.8E-16 1.7E-20 99.8 6.7 79 24-107 12-90 (247)
24 PLN03213 repressor of silencin 99.6 1.5E-15 3.2E-20 107.6 8.5 79 22-108 8-88 (759)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 2.3E-15 4.9E-20 110.0 9.6 79 23-106 57-136 (578)
26 KOG0126 Predicted RNA-binding 99.6 1.9E-17 4.1E-22 103.7 -1.1 86 17-106 27-113 (219)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 3E-15 6.6E-20 108.2 10.1 78 22-108 273-351 (481)
28 TIGR01622 SF-CC1 splicing fact 99.6 4.1E-15 9E-20 106.7 10.0 81 22-107 87-167 (457)
29 KOG0145 RNA-binding protein EL 99.6 4.3E-15 9.3E-20 98.0 8.4 85 23-111 40-124 (360)
30 KOG0113 U1 small nuclear ribon 99.6 8.7E-15 1.9E-19 97.8 9.7 83 22-108 99-181 (335)
31 KOG0148 Apoptosis-promoting RN 99.6 3.7E-15 8.1E-20 98.5 7.9 82 24-109 62-143 (321)
32 KOG0108 mRNA cleavage and poly 99.6 2.2E-15 4.7E-20 106.8 7.1 82 25-110 19-100 (435)
33 KOG0130 RNA-binding protein RB 99.6 4.6E-15 1E-19 89.1 7.1 82 22-107 70-151 (170)
34 smart00362 RRM_2 RNA recogniti 99.6 1E-14 2.2E-19 78.9 7.9 72 26-103 1-72 (72)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 7.5E-15 1.6E-19 106.2 9.5 77 23-109 1-79 (481)
36 TIGR01648 hnRNP-R-Q heterogene 99.6 8.8E-15 1.9E-19 107.0 9.2 75 23-109 232-308 (578)
37 KOG0131 Splicing factor 3b, su 99.6 3.3E-15 7.2E-20 93.7 5.9 82 21-106 6-87 (203)
38 KOG0114 Predicted RNA-binding 99.6 1.8E-14 3.9E-19 82.9 8.3 79 23-108 17-95 (124)
39 smart00360 RRM RNA recognition 99.6 1.6E-14 3.6E-19 77.7 7.6 71 29-103 1-71 (71)
40 COG0724 RNA-binding proteins ( 99.6 1.7E-14 3.7E-19 95.7 9.2 79 24-106 115-193 (306)
41 KOG0117 Heterogeneous nuclear 99.6 2.4E-14 5.1E-19 100.1 9.7 81 22-106 81-162 (506)
42 KOG0145 RNA-binding protein EL 99.6 2.1E-14 4.5E-19 94.8 8.7 82 23-108 277-358 (360)
43 KOG4206 Spliceosomal protein s 99.6 2.8E-14 6E-19 92.1 7.9 83 22-111 7-93 (221)
44 PLN03121 nucleic acid binding 99.5 6.5E-14 1.4E-18 91.9 9.6 77 22-106 3-79 (243)
45 cd00590 RRM RRM (RNA recogniti 99.5 2.1E-13 4.5E-18 74.0 9.4 74 26-104 1-74 (74)
46 KOG0144 RNA-binding protein CU 99.5 4.1E-14 8.9E-19 98.6 6.9 83 24-110 34-119 (510)
47 KOG0117 Heterogeneous nuclear 99.5 9.8E-14 2.1E-18 97.0 7.0 75 25-111 260-334 (506)
48 KOG0105 Alternative splicing f 99.5 1.2E-13 2.5E-18 87.2 6.6 81 21-108 3-83 (241)
49 KOG0127 Nucleolar protein fibr 99.5 1.3E-13 2.8E-18 98.6 7.4 84 24-111 292-381 (678)
50 KOG0124 Polypyrimidine tract-b 99.5 3.1E-14 6.7E-19 97.8 4.0 77 25-105 114-190 (544)
51 KOG0127 Nucleolar protein fibr 99.4 5.6E-13 1.2E-17 95.4 8.5 83 22-109 115-197 (678)
52 PF13893 RRM_5: RNA recognitio 99.4 5.8E-13 1.2E-17 69.8 6.5 56 41-105 1-56 (56)
53 smart00361 RRM_1 RNA recogniti 99.4 7E-13 1.5E-17 72.6 7.0 63 38-103 2-70 (70)
54 KOG0147 Transcriptional coacti 99.4 2E-13 4.3E-18 97.4 5.7 81 22-106 276-356 (549)
55 KOG0415 Predicted peptidyl pro 99.4 6.4E-13 1.4E-17 91.0 6.3 88 18-109 233-320 (479)
56 KOG4208 Nucleolar RNA-binding 99.4 1.6E-12 3.4E-17 83.1 7.4 84 21-108 46-130 (214)
57 KOG0144 RNA-binding protein CU 99.4 7.7E-13 1.7E-17 92.4 6.2 89 20-112 420-508 (510)
58 KOG0131 Splicing factor 3b, su 99.4 1.5E-12 3.3E-17 81.8 6.5 85 22-109 94-178 (203)
59 KOG0109 RNA-binding protein LA 99.4 1E-12 2.2E-17 87.8 5.4 74 25-110 3-76 (346)
60 KOG0146 RNA-binding protein ET 99.4 1.8E-12 3.9E-17 86.0 5.8 85 22-111 17-104 (371)
61 KOG4661 Hsp27-ERE-TATA-binding 99.3 8E-12 1.7E-16 90.3 7.9 82 25-110 406-487 (940)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.3 8.2E-12 1.8E-16 90.8 8.0 85 22-107 407-501 (509)
63 KOG0123 Polyadenylate-binding 99.3 7.3E-12 1.6E-16 87.9 7.5 77 27-110 79-155 (369)
64 KOG4212 RNA-binding protein hn 99.3 1.9E-11 4.2E-16 85.9 8.5 78 25-106 45-122 (608)
65 KOG0110 RNA-binding protein (R 99.3 3.7E-12 8.1E-17 93.2 4.5 90 16-109 605-694 (725)
66 KOG0109 RNA-binding protein LA 99.2 1.5E-11 3.2E-16 82.4 4.8 77 21-109 75-151 (346)
67 KOG4212 RNA-binding protein hn 99.2 6.5E-11 1.4E-15 83.3 7.6 76 21-105 533-608 (608)
68 KOG0110 RNA-binding protein (R 99.2 6.4E-11 1.4E-15 86.9 7.0 80 25-106 516-596 (725)
69 KOG0533 RRM motif-containing p 99.2 3.4E-10 7.4E-15 75.0 8.8 86 21-111 80-165 (243)
70 KOG0132 RNA polymerase II C-te 99.1 1.9E-10 4.1E-15 85.3 7.3 76 24-109 421-496 (894)
71 KOG1548 Transcription elongati 99.1 3.6E-10 7.8E-15 77.3 7.7 83 24-107 134-220 (382)
72 KOG1457 RNA binding protein (c 99.1 7.2E-10 1.6E-14 72.1 8.5 85 24-111 34-121 (284)
73 KOG0151 Predicted splicing reg 99.1 1.2E-10 2.5E-15 85.8 5.4 86 22-108 172-257 (877)
74 KOG0153 Predicted RNA-binding 99.1 5.5E-10 1.2E-14 76.4 7.4 76 22-107 226-302 (377)
75 KOG0123 Polyadenylate-binding 99.1 6.5E-10 1.4E-14 78.2 7.7 75 25-109 2-76 (369)
76 KOG0124 Polypyrimidine tract-b 99.1 5.9E-10 1.3E-14 77.1 6.5 80 25-108 211-290 (544)
77 PF04059 RRM_2: RNA recognitio 98.9 2.2E-08 4.7E-13 57.8 9.3 82 24-108 1-87 (97)
78 KOG0226 RNA-binding proteins [ 98.9 1.5E-09 3.3E-14 71.7 5.1 78 23-104 189-266 (290)
79 KOG0116 RasGAP SH3 binding pro 98.9 5.3E-09 1.1E-13 74.3 8.1 82 23-109 287-368 (419)
80 KOG4660 Protein Mei2, essentia 98.9 1.5E-09 3.3E-14 78.0 4.7 71 22-101 73-143 (549)
81 KOG4205 RNA-binding protein mu 98.9 1.9E-09 4E-14 74.0 4.2 84 23-111 5-88 (311)
82 KOG4205 RNA-binding protein mu 98.8 7.7E-09 1.7E-13 71.0 5.9 83 24-111 97-179 (311)
83 KOG4209 Splicing factor RNPS1, 98.8 1.4E-08 3.1E-13 67.2 5.6 83 21-108 98-180 (231)
84 PF11608 Limkain-b1: Limkain b 98.8 3.1E-08 6.8E-13 55.2 5.4 70 25-108 3-77 (90)
85 KOG0106 Alternative splicing f 98.7 1.4E-08 3.1E-13 66.2 3.9 71 25-107 2-72 (216)
86 KOG0120 Splicing factor U2AF, 98.7 2.9E-08 6.3E-13 71.7 4.1 82 24-109 289-370 (500)
87 KOG1190 Polypyrimidine tract-b 98.6 2.4E-07 5.1E-12 65.1 7.4 77 24-109 297-374 (492)
88 KOG1190 Polypyrimidine tract-b 98.6 3E-07 6.4E-12 64.6 7.1 89 11-107 400-490 (492)
89 KOG4454 RNA binding protein (R 98.5 3.8E-08 8.2E-13 64.0 1.9 81 22-108 7-87 (267)
90 KOG1457 RNA binding protein (c 98.5 2E-07 4.3E-12 60.9 3.7 66 22-95 208-273 (284)
91 KOG4849 mRNA cleavage factor I 98.3 1.3E-06 2.9E-11 60.5 4.5 81 24-106 80-161 (498)
92 KOG0120 Splicing factor U2AF, 98.3 2E-06 4.4E-11 62.3 5.3 68 40-108 425-492 (500)
93 KOG2416 Acinus (induces apopto 98.2 3.5E-06 7.7E-11 61.7 5.1 81 19-108 439-522 (718)
94 KOG0147 Transcriptional coacti 98.2 7.9E-07 1.7E-11 64.3 1.6 78 24-106 179-256 (549)
95 KOG1995 Conserved Zn-finger pr 98.1 4.8E-06 1E-10 57.6 5.0 87 22-109 64-155 (351)
96 COG5175 MOT2 Transcriptional r 98.1 1.1E-05 2.4E-10 55.8 5.8 78 24-107 114-202 (480)
97 KOG1456 Heterogeneous nuclear 98.1 4.3E-05 9.4E-10 53.6 8.5 80 20-108 283-363 (494)
98 KOG4211 Splicing factor hnRNP- 98.1 2.7E-05 5.9E-10 56.0 7.6 78 23-108 9-86 (510)
99 KOG4206 Spliceosomal protein s 98.1 2.7E-05 5.9E-10 50.9 7.0 78 20-106 142-220 (221)
100 PF08777 RRM_3: RNA binding mo 98.0 1.8E-05 3.8E-10 46.5 5.1 71 24-104 1-76 (105)
101 KOG1548 Transcription elongati 98.0 4.4E-05 9.5E-10 52.9 7.3 79 22-108 263-352 (382)
102 KOG0106 Alternative splicing f 98.0 8.7E-06 1.9E-10 53.3 3.7 73 22-106 97-169 (216)
103 KOG4210 Nuclear localization s 97.9 6.4E-06 1.4E-10 56.4 2.5 82 24-110 184-266 (285)
104 KOG3152 TBP-binding protein, a 97.9 7.2E-06 1.6E-10 54.6 1.8 74 23-99 73-157 (278)
105 KOG2202 U2 snRNP splicing fact 97.8 1.3E-05 2.7E-10 53.4 2.6 64 39-106 83-146 (260)
106 KOG4211 Splicing factor hnRNP- 97.8 9.9E-05 2.2E-09 53.2 7.1 78 23-105 102-179 (510)
107 KOG4307 RNA binding protein RB 97.8 0.00016 3.5E-09 54.4 8.1 75 25-104 868-943 (944)
108 KOG0112 Large RNA-binding prot 97.4 0.00019 4.2E-09 55.1 4.2 78 21-108 452-531 (975)
109 KOG2193 IGF-II mRNA-binding pr 97.4 0.00022 4.8E-09 50.9 4.1 74 25-108 2-76 (584)
110 PF08952 DUF1866: Domain of un 97.4 0.00067 1.5E-08 41.9 5.7 77 19-108 22-107 (146)
111 KOG2314 Translation initiation 97.4 0.00078 1.7E-08 49.7 6.8 78 23-105 57-141 (698)
112 KOG1996 mRNA splicing factor [ 97.4 0.00066 1.4E-08 46.4 5.6 66 38-107 300-366 (378)
113 KOG1456 Heterogeneous nuclear 97.3 0.001 2.2E-08 46.9 6.4 80 21-109 117-200 (494)
114 KOG4676 Splicing factor, argin 97.3 0.00035 7.6E-09 49.3 4.1 77 26-104 9-85 (479)
115 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00097 2.1E-08 34.3 4.5 52 25-87 2-53 (53)
116 PF15023 DUF4523: Protein of u 97.2 0.0029 6.3E-08 39.0 7.0 76 19-106 81-160 (166)
117 KOG0129 Predicted RNA-binding 97.1 0.0015 3.3E-08 47.6 5.8 64 24-91 259-327 (520)
118 KOG1365 RNA-binding protein Fu 97.1 0.0014 3.1E-08 46.3 5.3 83 21-105 277-359 (508)
119 KOG1855 Predicted RNA-binding 97.1 0.00039 8.5E-09 49.6 2.5 70 22-92 229-308 (484)
120 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0034 7.3E-08 36.6 5.9 80 24-106 6-90 (100)
121 KOG0129 Predicted RNA-binding 96.8 0.0042 9.1E-08 45.3 6.0 67 20-89 366-432 (520)
122 KOG1365 RNA-binding protein Fu 96.6 0.011 2.3E-07 42.1 6.6 64 25-89 162-225 (508)
123 KOG0128 RNA-binding protein SA 96.4 0.0019 4.2E-08 49.6 2.1 78 25-107 737-814 (881)
124 KOG0105 Alternative splicing f 96.3 0.023 5E-07 36.7 6.1 62 24-96 115-176 (241)
125 KOG0115 RNA-binding protein p5 96.3 0.0087 1.9E-07 40.3 4.4 63 25-92 32-94 (275)
126 PF11767 SET_assoc: Histone ly 96.3 0.027 5.9E-07 30.2 5.4 55 35-102 11-65 (66)
127 KOG0128 RNA-binding protein SA 96.2 0.00026 5.7E-09 54.1 -3.4 66 25-94 668-733 (881)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.011 2.3E-07 38.0 4.3 84 22-107 5-97 (176)
129 PF07576 BRAP2: BRCA1-associat 96.1 0.13 2.7E-06 30.5 9.1 68 24-97 12-81 (110)
130 PF08675 RNA_bind: RNA binding 96.1 0.031 6.7E-07 31.4 5.1 54 25-91 10-63 (87)
131 KOG4660 Protein Mei2, essentia 95.9 0.019 4E-07 42.4 4.7 82 22-106 386-471 (549)
132 KOG0112 Large RNA-binding prot 95.8 0.0019 4.2E-08 49.9 -0.6 78 23-105 371-448 (975)
133 KOG0804 Cytoplasmic Zn-finger 95.4 0.14 2.9E-06 37.3 7.6 69 24-97 74-142 (493)
134 PF10309 DUF2414: Protein of u 95.1 0.23 4.9E-06 26.3 6.3 54 25-90 6-62 (62)
135 KOG2253 U1 snRNP complex, subu 95.1 0.028 6.1E-07 42.4 3.4 75 17-104 33-107 (668)
136 KOG2068 MOT2 transcription fac 95.0 0.0063 1.4E-07 42.3 -0.2 78 25-108 78-163 (327)
137 KOG4307 RNA binding protein RB 94.9 0.03 6.6E-07 42.7 3.2 79 21-103 431-509 (944)
138 PF03880 DbpA: DbpA RNA bindin 94.9 0.23 5E-06 27.1 6.0 64 34-105 11-74 (74)
139 KOG4574 RNA-binding protein (c 94.3 0.055 1.2E-06 42.1 3.4 74 28-111 302-377 (1007)
140 PF04847 Calcipressin: Calcipr 94.1 0.11 2.5E-06 33.5 4.1 61 38-108 9-71 (184)
141 KOG4285 Mitotic phosphoprotein 93.8 0.46 1E-05 33.0 6.7 61 27-99 200-260 (350)
142 KOG2591 c-Mpl binding protein, 92.7 0.26 5.6E-06 36.9 4.5 76 19-104 170-248 (684)
143 KOG2135 Proteins containing th 91.0 0.21 4.5E-06 36.6 2.4 74 25-109 373-447 (526)
144 KOG4410 5-formyltetrahydrofola 90.7 1.3 2.8E-05 30.8 5.8 47 25-80 331-377 (396)
145 KOG4210 Nuclear localization s 88.7 0.42 9.1E-06 33.0 2.5 78 23-104 87-164 (285)
146 KOG4483 Uncharacterized conser 81.0 4.6 9.9E-05 29.5 4.7 55 25-89 392-446 (528)
147 KOG2193 IGF-II mRNA-binding pr 80.1 0.075 1.6E-06 38.5 -4.2 78 22-106 78-155 (584)
148 KOG4676 Splicing factor, argin 76.8 0.47 1E-05 34.2 -1.1 69 25-102 152-220 (479)
149 PF02714 DUF221: Domain of unk 71.7 7.6 0.00016 27.0 3.9 36 73-110 1-36 (325)
150 KOG2318 Uncharacterized conser 69.1 50 0.0011 25.5 7.6 90 19-108 169-308 (650)
151 KOG2295 C2H2 Zn-finger protein 60.7 0.91 2E-05 34.1 -2.4 71 24-99 231-302 (648)
152 KOG0156 Cytochrome P450 CYP2 s 53.5 53 0.0011 24.7 5.6 70 16-100 25-97 (489)
153 KOG4019 Calcineurin-mediated s 51.0 40 0.00086 22.0 4.0 38 70-107 51-89 (193)
154 KOG4008 rRNA processing protei 49.8 21 0.00046 24.2 2.7 34 19-53 35-68 (261)
155 PF10567 Nab6_mRNP_bdg: RNA-re 49.1 63 0.0014 22.8 4.9 79 24-106 15-106 (309)
156 KOG0862 Synaptobrevin/VAMP-lik 46.9 22 0.00048 23.7 2.5 32 39-81 89-120 (216)
157 KOG3424 40S ribosomal protein 43.3 75 0.0016 19.3 5.1 49 35-84 34-83 (132)
158 COG0724 RNA-binding proteins ( 41.9 32 0.00069 22.2 2.8 34 21-55 222-255 (306)
159 PF11823 DUF3343: Protein of u 41.4 50 0.0011 17.6 3.0 26 71-96 2-27 (73)
160 KOG1295 Nonsense-mediated deca 41.0 35 0.00076 24.8 2.9 66 25-96 8-78 (376)
161 KOG2891 Surface glycoprotein [ 39.7 55 0.0012 23.0 3.6 36 21-57 146-193 (445)
162 PF07292 NID: Nmi/IFP 35 domai 36.5 23 0.0005 20.1 1.2 25 21-45 49-73 (88)
163 PTZ00071 40S ribosomal protein 35.9 1.1E+02 0.0023 18.9 5.6 51 34-85 34-86 (132)
164 PF15513 DUF4651: Domain of un 35.4 73 0.0016 16.9 3.6 16 39-55 9-24 (62)
165 PF09707 Cas_Cas2CT1978: CRISP 35.1 88 0.0019 17.7 3.8 48 24-78 25-72 (86)
166 KOG0115 RNA-binding protein p5 34.4 51 0.0011 22.7 2.7 27 81-107 5-31 (275)
167 PHA01632 hypothetical protein 34.4 60 0.0013 16.8 2.4 21 27-47 19-39 (64)
168 PRK11558 putative ssRNA endonu 33.9 91 0.002 18.1 3.4 49 24-79 27-75 (97)
169 PF03468 XS: XS domain; Inter 33.6 1.1E+02 0.0023 18.2 4.6 42 36-84 29-70 (116)
170 PF11411 DNA_ligase_IV: DNA li 32.0 37 0.00079 15.9 1.3 14 34-47 19-32 (36)
171 TIGR01873 cas_CT1978 CRISPR-as 30.6 94 0.002 17.6 3.0 51 23-79 24-74 (87)
172 PF00220 Hormone_4: Neurohypop 29.7 31 0.00066 11.0 0.6 6 28-33 2-7 (9)
173 PF15407 Spo7_2_N: Sporulation 29.7 21 0.00046 19.1 0.3 24 22-45 25-48 (67)
174 KOG2187 tRNA uracil-5-methyltr 29.1 31 0.00068 26.2 1.2 41 68-108 61-101 (534)
175 COG0030 KsgA Dimethyladenosine 28.6 83 0.0018 21.7 3.0 23 25-47 96-118 (259)
176 COG0150 PurM Phosphoribosylami 28.3 35 0.00076 24.5 1.3 48 38-93 275-322 (345)
177 PF03439 Spt5-NGN: Early trans 28.1 80 0.0017 17.4 2.5 28 67-94 41-68 (84)
178 cd06404 PB1_aPKC PB1 domain is 27.5 1.2E+02 0.0027 17.0 7.4 63 26-94 10-72 (83)
179 PRK11901 hypothetical protein; 27.5 2.4E+02 0.0051 20.3 5.8 52 36-94 254-308 (327)
180 TIGR03067 Planc_TIGR03067 Plan 26.3 91 0.002 18.2 2.6 22 93-114 83-104 (107)
181 smart00596 PRE_C2HC PRE_C2HC d 25.1 1.3E+02 0.0027 16.3 2.9 61 39-106 2-63 (69)
182 PF08394 Arc_trans_TRASH: Arch 23.1 1E+02 0.0022 14.5 1.9 16 91-106 4-19 (37)
183 PHA01782 hypothetical protein 22.0 1E+02 0.0022 19.7 2.4 22 31-53 62-83 (177)
184 PRK01178 rps24e 30S ribosomal 21.9 1.8E+02 0.0039 16.9 6.1 48 34-85 29-80 (99)
185 PF14893 PNMA: PNMA 21.6 85 0.0018 22.5 2.2 26 22-47 16-41 (331)
186 PF08156 NOP5NT: NOP5NT (NUC12 21.4 77 0.0017 16.8 1.5 22 70-91 44-65 (67)
187 COG5594 Uncharacterized integr 21.3 1.3E+02 0.0028 24.4 3.2 37 70-107 357-393 (827)
188 KOG0821 Predicted ribosomal RN 20.5 1.7E+02 0.0036 20.1 3.2 29 18-47 124-152 (326)
189 PF05573 NosL: NosL; InterPro 20.4 2.1E+02 0.0046 17.6 3.6 23 70-92 114-136 (149)
190 PRK08559 nusG transcription an 20.3 1.2E+02 0.0026 18.9 2.4 26 69-94 45-70 (153)
191 cd00027 BRCT Breast Cancer Sup 20.3 1.3E+02 0.0028 14.6 3.3 26 25-51 2-27 (72)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=6.5e-21 Score=117.87 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
...+++|||+|||+++++++|+++|.+ ||.|..++ .+.+..++++++||||+|.+.++|+.|+..||+..++|+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~---i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAK---VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEE---EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 355788999999999999999999999 99999887 46678899999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
+|+++..+..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999986654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.83 E-value=9.6e-20 Score=126.59 Aligned_cols=83 Identities=24% Similarity=0.487 Sum_probs=76.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+.+|||+|||+.+++++|+++|++ ||.|.+++ .+.+..+|.++|||||+|.+.++|.+|+..|||..++||.|+|.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~---i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVK---IIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEE---EeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 447999999999999999999999 99999987 46677799999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 033648 104 FGRNPAA 110 (114)
Q Consensus 104 ~a~~~~~ 110 (114)
|+.++..
T Consensus 345 ~~~~~~~ 351 (352)
T TIGR01661 345 FKTNKAY 351 (352)
T ss_pred EccCCCC
Confidence 9987653
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=5.5e-19 Score=122.77 Aligned_cols=84 Identities=24% Similarity=0.432 Sum_probs=77.5
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
+.++|||+|||..+++++|+++|++ ||.|.+++ .+.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~-~G~i~~v~---i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTS-IGEIESCK---LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHc-cCCEEEEE---EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 4689999999999999999999999 99999987 4667778999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 033648 103 QFGRNPAA 110 (114)
Q Consensus 103 ~~a~~~~~ 110 (114)
+++++...
T Consensus 78 ~~a~~~~~ 85 (352)
T TIGR01661 78 SYARPSSD 85 (352)
T ss_pred Eeeccccc
Confidence 99986653
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.2e-18 Score=121.04 Aligned_cols=85 Identities=25% Similarity=0.473 Sum_probs=77.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
....++|||+|||+++++++|+++|.. ||.|..++ .+.+..++++++||||+|.+.++|++|++.|||..+.+++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~---i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCR---IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 356789999999999999999999999 99999887 45677899999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
+|.++++..
T Consensus 180 ~V~~a~p~~ 188 (346)
T TIGR01659 180 KVSYARPGG 188 (346)
T ss_pred eeecccccc
Confidence 999998653
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=6.6e-18 Score=91.98 Aligned_cols=70 Identities=37% Similarity=0.581 Sum_probs=63.6
Q ss_pred EEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 27 l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
|||+|||+++++++|+.+|.+ ||.+..++ +....++..+++|||+|.+.++|+.|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~----~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIK----VMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEE----EEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccc----ccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 99998775 22337788999999999999999999999999999999885
No 6
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4e-18 Score=110.86 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=77.5
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..++|.|+||+.++++++|+++|.+ ||.+.++. ..+++.||.++|||||.|.+.++|.+|+..|||+-++.-.|.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvy---lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVY---LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeE---EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 4578999999999999999999999 99999886 5789999999999999999999999999999999999999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
+|++++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999986
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=5.4e-17 Score=112.79 Aligned_cols=84 Identities=27% Similarity=0.516 Sum_probs=75.1
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC--ceE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--KPM 100 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g--~~l 100 (114)
..++|||+|||..+++++|+++|++ ||.|..++ .+.+..+++.++||||+|.+.++|++|++.||+..+.+ ++|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~---i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKN---ILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEE---EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 4578999999999999999999999 99998886 45677799999999999999999999999999998865 689
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|.+|+....
T Consensus 268 ~V~~a~~~~~ 277 (346)
T TIGR01659 268 TVRLAEEHGK 277 (346)
T ss_pred EEEECCcccc
Confidence 9999986543
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=8.9e-17 Score=117.68 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=74.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
...++|||+|||+.+++++|+.+|.+ ||.|.+++ .+.+..+|+++|||||+|.+.++|.+|+..|||..++|+.|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~---I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDP-FGPIKSIN---MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEE---EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 44679999999999999999999999 99999887 456788999999999999999999999999999999999999
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
|.+..
T Consensus 181 V~rp~ 185 (612)
T TIGR01645 181 VGRPS 185 (612)
T ss_pred ecccc
Confidence 98654
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=1.2e-16 Score=116.94 Aligned_cols=84 Identities=17% Similarity=0.319 Sum_probs=76.5
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..++|||+|||+++++++|+.+|++ ||.|.+++ ...+..++.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svr---l~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQ---LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEE---EEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3478999999999999999999999 99999887 4566778899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 033648 103 QFGRNPAA 110 (114)
Q Consensus 103 ~~a~~~~~ 110 (114)
.++.+...
T Consensus 279 ~kAi~pP~ 286 (612)
T TIGR01645 279 GKCVTPPD 286 (612)
T ss_pred EecCCCcc
Confidence 99986543
No 10
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.5e-17 Score=108.79 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=83.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
++.+|+|||.+||..+.+.+|..+|.+ ||.|.+.+ ...++.|..+++|+||.|.+..+++.||.+|||..|+-+.|
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaK---VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAK---VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhcc-ccceeeee---eeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 577899999999999999999999999 99999887 57788899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCC
Q 033648 101 IIQFGRNPAAAKP 113 (114)
Q Consensus 101 ~v~~a~~~~~~~~ 113 (114)
+|++.+++.+.+|
T Consensus 358 KVQLKRPkdanRP 370 (371)
T KOG0146|consen 358 KVQLKRPKDANRP 370 (371)
T ss_pred hhhhcCccccCCC
Confidence 9999999988775
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.69 E-value=2.1e-16 Score=115.91 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=74.7
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
.+|||+|||.++++++|+++|++ ||.|.+++ .+++..+++++|||||.|.+.++|++|+..+|+..+.|++|+|.|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~-~G~v~~v~---v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKP-FGPVLSVR---VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 36999999999999999999999 99998886 456777899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
+..+..
T Consensus 77 s~~~~~ 82 (562)
T TIGR01628 77 SQRDPS 82 (562)
T ss_pred cccccc
Confidence 875543
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=2.9e-16 Score=85.79 Aligned_cols=70 Identities=37% Similarity=0.632 Sum_probs=60.3
Q ss_pred EEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 27 l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
|||+|||+++++++|..+|.. +|.+..+. ....+. +..+++|||+|.+.++|.+|+..++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~---~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVR---LIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEE---EEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEE---EEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999 99987775 233434 78899999999999999999999999999999874
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=4.7e-16 Score=111.52 Aligned_cols=80 Identities=26% Similarity=0.567 Sum_probs=74.2
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..++|||+|||..+++++|+.+|.+ ||.|..+. .+.+..+|.++|||||+|.+.++|..|+..|||..+.|++|.|
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~---~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQ---LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEE---EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 3689999999999999999999999 99998886 4566778899999999999999999999999999999999999
Q ss_pred Eecc
Q 033648 103 QFGR 106 (114)
Q Consensus 103 ~~a~ 106 (114)
.+|.
T Consensus 261 ~~a~ 264 (457)
T TIGR01622 261 GYAQ 264 (457)
T ss_pred EEcc
Confidence 9976
No 14
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.1e-17 Score=104.69 Aligned_cols=87 Identities=23% Similarity=0.339 Sum_probs=80.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.+..++||||+|...+++.-|...|.+ ||.|..+++ ..+..+++.+||+||+|...|+|.+|+..||+.++.||.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqi---PlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQI---PLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhcccc-ccchhhccc---ccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 355689999999999999999999999 999999984 4477899999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
+|.+|+|.+..
T Consensus 83 rVN~AkP~kik 93 (298)
T KOG0111|consen 83 RVNLAKPEKIK 93 (298)
T ss_pred EEeecCCcccc
Confidence 99999987655
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=4.5e-16 Score=114.21 Aligned_cols=83 Identities=30% Similarity=0.496 Sum_probs=75.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
...++|||+||++.+++++|+++|++ ||.|.++++ +.+ .+|.++|||||+|.+.++|.+|+..|||..++|++|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~-~G~i~~~~i---~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~ 357 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSE-CGEITSAKV---MLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY 357 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHh-cCCeEEEEE---EEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence 45678999999999999999999999 999998863 333 6789999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|.+|..+.
T Consensus 358 V~~a~~k~ 365 (562)
T TIGR01628 358 VALAQRKE 365 (562)
T ss_pred EEeccCcH
Confidence 99998654
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.67 E-value=8.8e-16 Score=111.35 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=75.3
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+..+|||+|||..+++++|+++|.. ||.|..+. .+.+..+|.++|||||+|.+.++|..|+..|||..++|+.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~---~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLES-FGDLKAFN---LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEE---EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34578999999999999999999999 99998876 456677899999999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
|.+|...
T Consensus 369 v~~a~~~ 375 (509)
T TIGR01642 369 VQRACVG 375 (509)
T ss_pred EEECccC
Confidence 9998643
No 17
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=94.37 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=70.2
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
..+++||||||+..++++++.++|++ .|.|..+-.. .++.+-...|||||+|.+.++|+.|++.++|+.+..++|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMG---Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMG---LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEec---cccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 56799999999999999999999999 9999876322 2334445669999999999999999999999999999999
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
+.|.-
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 98864
No 18
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=5.7e-16 Score=96.54 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=70.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.+-.+.||||||+...+..+|+..|.. ||.+..+ |+-. ...|||||+|.+..+|+.|+..|+|..|.|..+
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsv----WvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSK-YGPLRSV----WVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHh-cCcceeE----EEee----cCCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 355789999999999999999999999 9998765 4322 467999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
.|+++....
T Consensus 78 rVE~S~G~~ 86 (195)
T KOG0107|consen 78 RVELSTGRP 86 (195)
T ss_pred EEEeecCCc
Confidence 999998654
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=4.8e-16 Score=104.92 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=70.5
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
..+|+|+|||+.+.+.||+.+|.+ ||.|.++++ |.+ ...+||||||+|.+.++|++|=.+|||..+.||+|.|.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEI---IfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEI---IFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CceeEeecCCccccCccHHHHHHh-hCceeeEEE---Eec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 468999999999999999999999 999998874 222 23579999999999999999999999999999999999
Q ss_pred eccCC
Q 033648 104 FGRNP 108 (114)
Q Consensus 104 ~a~~~ 108 (114)
.|...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98743
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=2.2e-15 Score=99.96 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.++|||+|||+.+++++|+++|+. ||.|.++.+ +.+. ..+|||||+|.+.++|+.|+ .|||..+.|+.|.|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I---~~d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEM---QSEN---ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---eecC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEE
Confidence 468999999999999999999999 999998863 2232 25689999999999999999 599999999999999
Q ss_pred ecc
Q 033648 104 FGR 106 (114)
Q Consensus 104 ~a~ 106 (114)
.+.
T Consensus 76 ~a~ 78 (260)
T PLN03120 76 PAE 78 (260)
T ss_pred ecc
Confidence 987
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.9e-15 Score=99.82 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.+.+|++|+||++..++++++++.|++ ||.|.++++ . +.+||+||.|.+.|+|.+||..+||.+++|..+
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRv---F------k~qGYaFVrF~tkEaAahAIv~mNntei~G~~V 230 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRV---F------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLV 230 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEE---e------cccceEEEEecchhhHHHHHHHhcCceeCceEE
Confidence 467899999999999999999999999 999998763 2 367999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
++.|.|.....
T Consensus 231 kCsWGKe~~~~ 241 (321)
T KOG0148|consen 231 RCSWGKEGDDG 241 (321)
T ss_pred EEeccccCCCC
Confidence 99999976544
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.64 E-value=7.9e-16 Score=98.31 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=75.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
...+.|.|-||...++.++|+.+|++ ||.|..+. +..+..|+..+|||||.|....+|+.|+.+|+|..++|+.|.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVy---IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVY---IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHH-hCccccee---cccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44578999999999999999999999 99998886 455788999999999999999999999999999999999999
Q ss_pred EEeccC
Q 033648 102 IQFGRN 107 (114)
Q Consensus 102 v~~a~~ 107 (114)
|++|+=
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 999983
No 23
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=7.8e-16 Score=99.79 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=69.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
-+.||||+|+|.+..+.|++.|+. ||+|.+.. .+.++.+|+++||+||+|.+.++|.+|++. ..-.|+||.-.+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeq-fGeI~eav---vitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAV---VITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHH-hCceEEEE---EEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 367999999999999999999999 99998876 688999999999999999999999999853 3356899998888
Q ss_pred eccC
Q 033648 104 FGRN 107 (114)
Q Consensus 104 ~a~~ 107 (114)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7763
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.5e-15 Score=107.64 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=70.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCH--HHHHHHHHHhCCcccCCce
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV--ELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~g~~~~g~~ 99 (114)
....+||||||++.+++++|+..|+. ||.|..+++ + +.+| +|||||+|.+. .++.+|+..|||..+.|+.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEI---p--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEF---V--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEE---e--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 44578999999999999999999999 999998873 2 4566 89999999987 7899999999999999999
Q ss_pred EEEEeccCC
Q 033648 100 MIIQFGRNP 108 (114)
Q Consensus 100 l~v~~a~~~ 108 (114)
|+|..|++.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999999853
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=2.3e-15 Score=110.01 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=70.1
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-CceEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GKPMI 101 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~l~ 101 (114)
..++|||+|||+++++++|+++|++ ||.|..++ .+++ .+|.++|||||+|.+.++|++|++.||+..+. |+.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~-~G~I~~vr---l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEK-AGPIYELR---LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHh-hCCEEEEE---EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 3589999999999999999999999 99998886 3445 78999999999999999999999999999985 78777
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
|..+.
T Consensus 132 V~~S~ 136 (578)
T TIGR01648 132 VCISV 136 (578)
T ss_pred ccccc
Confidence 76553
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.9e-17 Score=103.73 Aligned_cols=86 Identities=19% Similarity=0.411 Sum_probs=77.6
Q ss_pred cCCCC-CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 17 NYTAG-NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 17 ~~~~~-~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
.|+.. ..++-+||||||+..|+.+|..+|+. ||.+..+. .+++..||+++||||++|.+..+.-.|+..|||..+
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSq-yGe~vdin---LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki 102 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQ-YGEIVDIN---LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI 102 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeec-cCceEEEE---EEecCCCCcccceEEEEecCccceEEEEeccCCcee
Confidence 44443 56788999999999999999999999 99999887 578999999999999999999999999999999999
Q ss_pred CCceEEEEecc
Q 033648 96 KGKPMIIQFGR 106 (114)
Q Consensus 96 ~g~~l~v~~a~ 106 (114)
.||.|+|...-
T Consensus 103 ~gRtirVDHv~ 113 (219)
T KOG0126|consen 103 LGRTIRVDHVS 113 (219)
T ss_pred cceeEEeeecc
Confidence 99999998654
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.63 E-value=3e-15 Score=108.20 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=69.8
Q ss_pred CCCCeEEecCCCC-CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 22 NPASVLYIKNLAK-DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
+++++|||+|||+ .+++++|+.+|+. ||.|..++++ .+ .+|+|||+|.+.++|..|+..|||..+.|++|
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~-yG~V~~vki~---~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCV-YGNVERVKFM---KN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHh-cCCeEEEEEE---eC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 5778999999998 6999999999999 9999988642 22 36999999999999999999999999999999
Q ss_pred EEEeccCC
Q 033648 101 IIQFGRNP 108 (114)
Q Consensus 101 ~v~~a~~~ 108 (114)
.|++++..
T Consensus 344 ~v~~s~~~ 351 (481)
T TIGR01649 344 RVCPSKQQ 351 (481)
T ss_pred EEEEcccc
Confidence 99999764
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=4.1e-15 Score=106.66 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=73.5
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+..+|||+|||..+++++|+++|.+ +|.|..++ .+.+..++.++|||||+|.+.++|.+|+. |+|..+.|++|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~---i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSK-VGKVRDVQ---CIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEE---EeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeE
Confidence 45679999999999999999999999 99998887 45677789999999999999999999994 999999999999
Q ss_pred EEeccC
Q 033648 102 IQFGRN 107 (114)
Q Consensus 102 v~~a~~ 107 (114)
|+.+..
T Consensus 162 v~~~~~ 167 (457)
T TIGR01622 162 VQSSQA 167 (457)
T ss_pred Eeecch
Confidence 998754
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.3e-15 Score=98.00 Aligned_cols=85 Identities=25% Similarity=0.478 Sum_probs=80.1
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..+.|.|.-||..+|+++++.+|.. .|+|.+|+ .++++-+|.+-||+||-|.++++|++|+..|||..+..+.|+|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~S-iGeiEScK---LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGS-IGEIESCK---LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhc-ccceeeee---eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3467999999999999999999999 99999998 5889999999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 033648 103 QFGRNPAAA 111 (114)
Q Consensus 103 ~~a~~~~~~ 111 (114)
+||++.+++
T Consensus 116 SyARPSs~~ 124 (360)
T KOG0145|consen 116 SYARPSSDS 124 (360)
T ss_pred EeccCChhh
Confidence 999998765
No 30
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=8.7e-15 Score=97.78 Aligned_cols=83 Identities=19% Similarity=0.402 Sum_probs=77.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.|-+||||+.|+.++++..|+..|.. ||.|..+. .|.+..||+++|||||+|...-+...|-+.-+|.+|+|+.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~-YG~Ikrir---lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIR---LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHh-cCcceeEE---EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 55689999999999999999999999 99999887 688889999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
|.+-...
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 9876543
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.7e-15 Score=98.50 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=76.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.-.+||+.|...++.+.|++.|.+ ||.|.+++ .+++..|++++||+||.|...++|+.||..|||..|++|.|+-.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~p-FGevS~ak---virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAK---VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhcc-ccccccce---EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 346999999999999999999999 99999998 68899999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 033648 104 FGRNPA 109 (114)
Q Consensus 104 ~a~~~~ 109 (114)
||.-+.
T Consensus 138 WATRKp 143 (321)
T KOG0148|consen 138 WATRKP 143 (321)
T ss_pred ccccCc
Confidence 997543
No 32
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.61 E-value=2.2e-15 Score=106.77 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=77.9
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
+.+||||+|+++++++|..+|+. .|.|...+ .+.|+.+|+.+||||++|.+.++|..|++.|||.++.||+|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~---~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFR---LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceee---ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 88999999999999999999999 99998887 577999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
+..++.
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 987754
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=4.6e-15 Score=89.13 Aligned_cols=82 Identities=17% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
-.+..|||+++....+++++...|.. ||.|..+++.+ +..||..+||++|+|.+.+.|++|+..+||..+.|..|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNL---DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNL---DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhh-cccccceeecc---ccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 33578999999999999999999999 99999887544 678999999999999999999999999999999999999
Q ss_pred EEeccC
Q 033648 102 IQFGRN 107 (114)
Q Consensus 102 v~~a~~ 107 (114)
|.|+=-
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 998853
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.60 E-value=1e-14 Score=78.86 Aligned_cols=72 Identities=36% Similarity=0.621 Sum_probs=62.8
Q ss_pred eEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 26 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+|+|+|||..++.++|+.+|.+ ||.+..+.+ ... . +..+++|||+|.+.++|..|+..++|..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~---~~~-~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKI---PKD-T-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEE---ecC-C-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 4899999999999999999999 999987642 222 2 6778999999999999999999999999999998873
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=7.5e-15 Score=106.17 Aligned_cols=77 Identities=25% Similarity=0.435 Sum_probs=67.8
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHh--CCcccCCceE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLV--NGYVFKGKPM 100 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~g~~~~g~~l 100 (114)
|+.+|||+|||+.+++++|+++|++ ||.|..+.+ + +.+++|||+|.+.++|.+|+..+ ++..++|++|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~-fG~V~~v~i---~------~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l 70 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIP-FGPVSYVMM---L------PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPA 70 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEE---E------CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEE
Confidence 5789999999999999999999999 999988753 1 24689999999999999999875 7788999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
.|+++..+.
T Consensus 71 ~v~~s~~~~ 79 (481)
T TIGR01649 71 FFNYSTSQE 79 (481)
T ss_pred EEEecCCcc
Confidence 999997543
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=8.8e-15 Score=106.98 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=67.6
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhc--CCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLF--GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~--G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
...+|||+||+..+++++|+++|++ | |.|..+++ .++||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~-----------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I 299 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKK-----------IRDYAFVHFEDREDAVKAMDELNGKELEGSEI 299 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEe-----------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 3468999999999999999999999 9 99876641 35699999999999999999999999999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
.|.+|++..
T Consensus 300 ~V~~Akp~~ 308 (578)
T TIGR01648 300 EVTLAKPVD 308 (578)
T ss_pred EEEEccCCC
Confidence 999998754
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=93.66 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=75.4
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
-+...+||||||+..++++.|+++|-. .|.|..++ ..++..++..+||||++|.++|+|+-|++.||+..+.|++|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~---iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQ-AGPVVNLH---IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHh-cCceeeee---cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 356789999999999999999999999 99998887 45577788899999999999999999999999999999999
Q ss_pred EEEecc
Q 033648 101 IIQFGR 106 (114)
Q Consensus 101 ~v~~a~ 106 (114)
+|..+.
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 999887
No 38
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=82.93 Aligned_cols=79 Identities=23% Similarity=0.523 Sum_probs=69.9
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
-...|||.|||..+|.++..++|.+ ||.|..++ ...+-..+|.|||.|++..+|.+|+..|+|+.+.++.|.|
T Consensus 17 vnriLyirNLp~~ITseemydlFGk-yg~IrQIR------iG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIR------IGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhc-ccceEEEE------ecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3567999999999999999999999 99997554 3345567899999999999999999999999999999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
-+-.+.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 887654
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=1.6e-14 Score=77.74 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=62.4
Q ss_pred ecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 29 IKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 29 v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
|+|||..+++++|+.+|.+ ||.+..+. ......++..+++|||+|.+.++|..|+..+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~---i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVR---LVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEE---EEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999 99998775 23344467889999999999999999999999999999998873
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=1.7e-14 Score=95.70 Aligned_cols=79 Identities=33% Similarity=0.590 Sum_probs=72.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
..+|||+|||..+++++|..+|.. ||.+..+. ...+..++..+|+|||.|.+.+++..|+..++|..+.|++|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~---~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVR---LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEE---eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 589999999999999999999999 99998775 34455789999999999999999999999999999999999999
Q ss_pred ecc
Q 033648 104 FGR 106 (114)
Q Consensus 104 ~a~ 106 (114)
.+.
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 964
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.4e-14 Score=100.07 Aligned_cols=81 Identities=26% Similarity=0.398 Sum_probs=73.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc-CCceE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF-KGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~-~g~~l 100 (114)
+.+|-||||.||.++.+++|..+|.+ .|.|-+++ .++++.+|.++|||||.|.+.+.|+.|++.||+++| .|+.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~elR---LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYELR---LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHh-ccceeeEE---EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 55789999999999999999999999 99998887 466889999999999999999999999999999998 58888
Q ss_pred EEEecc
Q 033648 101 IIQFGR 106 (114)
Q Consensus 101 ~v~~a~ 106 (114)
.|+.+-
T Consensus 157 gvc~Sv 162 (506)
T KOG0117|consen 157 GVCVSV 162 (506)
T ss_pred EEEEee
Confidence 877654
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.1e-14 Score=94.79 Aligned_cols=82 Identities=23% Similarity=0.474 Sum_probs=76.2
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
.+.++||.||.++.++.-|+++|++ ||.+..++ .+++..+.+.+||+||.+.+-++|..|+..|||+.+++|.|.|
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVK---virD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGP-FGAVTNVK---VIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCc-ccceeeEE---EEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 3579999999999999999999999 99999998 5778888999999999999999999999999999999999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
.|...+
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 987654
No 43
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.55 E-value=2.8e-14 Score=92.14 Aligned_cols=83 Identities=39% Similarity=0.679 Sum_probs=74.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHH----HHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 22 NPASVLYIKNLAKDVVPDDFFF----VFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~----~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
+|..+|||.||+..+..++|+. +|+. ||.|.. +.-..+.+.+|-|||.|.+.+.|..|+..|+|..+.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsq-fG~ild------I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILD------ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHh-hCCeEE------EEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 4555999999999999998887 9999 998864 4455788999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
++++++||+.+++.
T Consensus 80 K~mriqyA~s~sdi 93 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDI 93 (221)
T ss_pred chhheecccCccch
Confidence 99999999988653
No 44
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=6.5e-14 Score=91.89 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
+.+.+|||+||++.+++++|+++|+. ||.|.++++ +.+ +..+++|||+|.+.++++.|+ .|+|..|.+++|.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I---~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~ 74 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEI---IRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVC 74 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEE---ecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEE
Confidence 35689999999999999999999999 999998863 333 455689999999999999998 7999999999999
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
|..+.
T Consensus 75 It~~~ 79 (243)
T PLN03121 75 ITRWG 79 (243)
T ss_pred EEeCc
Confidence 98754
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=2.1e-13 Score=73.99 Aligned_cols=74 Identities=31% Similarity=0.612 Sum_probs=64.0
Q ss_pred eEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 26 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
+|+|+|||..+++++++.+|.. +|.+..+. +.....+..+++|||+|.+.++|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~----~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVR----IVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEE----EeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999 99987765 22333336689999999999999999999999999999999864
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.1e-14 Score=98.61 Aligned_cols=83 Identities=17% Similarity=0.373 Sum_probs=74.6
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc-c--CCceE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-F--KGKPM 100 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-~--~g~~l 100 (114)
.-.+|||.+|..++|.+|+++|++ ||.|.+|. .++|+.++.++|||||.|.+.++|.+|+.+||... + ...+|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~-yg~V~ein---l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEK-YGNVYEIN---LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHH-hCceeEEE---eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 457999999999999999999999 99999987 68899999999999999999999999999999866 3 34689
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|.+|....+
T Consensus 110 qvk~Ad~E~e 119 (510)
T KOG0144|consen 110 QVKYADGERE 119 (510)
T ss_pred eecccchhhh
Confidence 9999987654
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=9.8e-14 Score=97.03 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=68.4
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
..|||.||+..+|++.|+++|.. ||.|..++. .+-||||-|.+.++|.+|++.+||+.+.|..|.|.+
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk-----------~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNE-FGKVERVKK-----------PRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHh-ccceEEeec-----------ccceeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 47999999999999999999999 999987752 356999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 033648 105 GRNPAAA 111 (114)
Q Consensus 105 a~~~~~~ 111 (114)
||+....
T Consensus 328 AKP~~k~ 334 (506)
T KOG0117|consen 328 AKPVDKK 334 (506)
T ss_pred cCChhhh
Confidence 9987544
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=87.23 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
....+++||+|||.++.+.+++.+|.+ ||.|..+. +++ .....+||||+|.+..+|+.||..-+|+.++|..|
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ie----LK~--r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIE----LKN--RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhh-hcceEEEE----ecc--CCCCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 355789999999999999999999999 99997664 222 22346899999999999999999999999999999
Q ss_pred EEEeccCC
Q 033648 101 IIQFGRNP 108 (114)
Q Consensus 101 ~v~~a~~~ 108 (114)
.|+|+..-
T Consensus 76 RVEfprgg 83 (241)
T KOG0105|consen 76 RVEFPRGG 83 (241)
T ss_pred EEEeccCC
Confidence 99999865
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=98.59 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=75.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHh-----CC-cccCC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLV-----NG-YVFKG 97 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-----~g-~~~~g 97 (114)
+.+|||.|||+++++++|.+.|++ ||.+.++. .+.++.|+.++|.|||.|.+...|..||..- .| ..++|
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~---iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAI---IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHh-hccceeEE---EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 479999999999999999999999 99999886 6778999999999999999999999999877 23 66899
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
|.|.|..|-++.++
T Consensus 368 R~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 368 RLLKVTLAVTRKEA 381 (678)
T ss_pred cEEeeeeccchHHH
Confidence 99999999887654
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=3.1e-14 Score=97.83 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=72.0
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
|++|||.+.+...++.++..|.+ ||.|.++.. .+++.|++++||+||+|.-.|.|+.|++.|||..++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~P-FGPIKSInM---SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDP-FGPIKSINM---SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccC-CCCcceeec---ccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 78999999999999999999999 999999984 45888999999999999999999999999999999999999974
Q ss_pred c
Q 033648 105 G 105 (114)
Q Consensus 105 a 105 (114)
-
T Consensus 190 P 190 (544)
T KOG0124|consen 190 P 190 (544)
T ss_pred C
Confidence 3
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=5.6e-13 Score=95.40 Aligned_cols=83 Identities=28% Similarity=0.444 Sum_probs=74.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+...|.|.|||+.+...+|+.+|+. ||.+..+.+ -....|+..|||||.|....+|..|++.|||.+|+||++-
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~I----P~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VA 189 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVI----PRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVA 189 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhh-cceEEEEEc----ccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeE
Confidence 34678999999999999999999999 999987753 2445677789999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|.||-++.
T Consensus 190 VDWAV~Kd 197 (678)
T KOG0127|consen 190 VDWAVDKD 197 (678)
T ss_pred Eeeecccc
Confidence 99998764
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=5.8e-13 Score=69.75 Aligned_cols=56 Identities=36% Similarity=0.710 Sum_probs=47.0
Q ss_pred HHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEec
Q 033648 41 FFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105 (114)
Q Consensus 41 l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 105 (114)
|..+|++ ||.|..+.+ .. .. +++|||+|.+.++|..|+..|||..++|++|+|+||
T Consensus 1 L~~~f~~-fG~V~~i~~-----~~-~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKI-----FK-KK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEE-----ET-TS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEE-----Ee-CC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 5788999 999987642 11 11 589999999999999999999999999999999986
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.44 E-value=7e-13 Score=72.56 Aligned_cols=63 Identities=29% Similarity=0.416 Sum_probs=52.2
Q ss_pred HhHHHHHHh----hhcCCceecccceeEEeccC--CCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 38 PDDFFFVFG----SLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 38 ~~~l~~~f~----~~~G~i~~~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+++|+.+|. + ||.+..+.. .+.++.+ +.++|++||.|.+.++|..|+..|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~--v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINK--IYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEE--EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 456777787 9 999987631 2345545 8899999999999999999999999999999999863
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.44 E-value=2e-13 Score=97.36 Aligned_cols=81 Identities=30% Similarity=0.498 Sum_probs=72.4
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.|-..||||||.+++++++|+..|.+ ||.|..+.+ .++..+|.++||+||+|...++|..|+..|||..+.|+.|+
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l---~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQL---TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccC-cccceeeee---ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 33344999999999999999999999 999988763 44667999999999999999999999999999999999999
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
|....
T Consensus 352 V~~v~ 356 (549)
T KOG0147|consen 352 VSVVT 356 (549)
T ss_pred EEEee
Confidence 98765
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.4e-13 Score=91.00 Aligned_cols=88 Identities=18% Similarity=0.370 Sum_probs=81.7
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
....+|.+.|||.-|.+-++.++|.-+|+. ||.|.+|. .+.+.+||.+-.||||+|.+.+++++|.-.|++..|.+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sce---VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCE---VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhh-cccceeee---EEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 445688999999999999999999999999 99999998 68899999999999999999999999999999999999
Q ss_pred ceEEEEeccCCC
Q 033648 98 KPMIIQFGRNPA 109 (114)
Q Consensus 98 ~~l~v~~a~~~~ 109 (114)
+.|+|.|+.+-+
T Consensus 309 rRIHVDFSQSVs 320 (479)
T KOG0415|consen 309 RRIHVDFSQSVS 320 (479)
T ss_pred ceEEeehhhhhh
Confidence 999999987543
No 56
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.40 E-value=1.6e-12 Score=83.08 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=73.8
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhc-CCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLF-GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~-G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
......+|+..+|..+.+.++...|.+ + |.+...+ .-++++||+++|||||+|.+.+.|.-|-+.||++.+.++.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q-~~g~v~r~r---lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQ-FGGTVTRFR---LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhh-cCCeeEEEE---eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 355567999999999999999999999 6 6666554 3468889999999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 033648 100 MIIQFGRNP 108 (114)
Q Consensus 100 l~v~~a~~~ 108 (114)
|.|.+-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999987765
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=7.7e-13 Score=92.38 Aligned_cols=89 Identities=21% Similarity=0.370 Sum_probs=81.3
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
.++.+..+||++||.++.+.+|...|.+ ||.|.+.+ ...++.++-+++|+||.|++..+|..||..|||..+++++
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~p-fG~Vlsak---vfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Kr 495 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQP-FGGVLSAK---VFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKR 495 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhcc-ccceeEEE---EEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcccc
Confidence 3577789999999999999999999999 99998886 5678889999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCC
Q 033648 100 MIIQFGRNPAAAK 112 (114)
Q Consensus 100 l~v~~a~~~~~~~ 112 (114)
|+|++...+....
T Consensus 496 lkVQlk~~~~np~ 508 (510)
T KOG0144|consen 496 LKVQLKRDRNNPY 508 (510)
T ss_pred ceEEeeeccCCCC
Confidence 9999988776544
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=1.5e-12 Score=81.82 Aligned_cols=85 Identities=20% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.-+..+||+||.+.+++..|...|+. ||.+...- -.+++..+|..++|+||-|.+.+.+.+|+..+||..++.+++.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P--~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPP--KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHh-ccccccCC--cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 44588999999999999999999999 99885431 1345667899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|.++..+.
T Consensus 171 v~ya~k~~ 178 (203)
T KOG0131|consen 171 VSYAFKKD 178 (203)
T ss_pred EEEEEecC
Confidence 99998553
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=1e-12 Score=87.85 Aligned_cols=74 Identities=18% Similarity=0.394 Sum_probs=67.4
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
..|||||||...++.+|+.+|.+ ||.|.+|.+ .+.||||-..+...++.|++.|||+.++|..|.|+-
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDI-----------vKNYgFVHiEdktaaedairNLhgYtLhg~nInVea 70 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDI-----------VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEA 70 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeee-----------ecccceEEeecccccHHHHhhcccceecceEEEEEe
Confidence 35899999999999999999999 999988852 467999999999999999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
+|+++.
T Consensus 71 SksKsk 76 (346)
T KOG0109|consen 71 SKSKSK 76 (346)
T ss_pred ccccCC
Confidence 988743
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.8e-12 Score=86.04 Aligned_cols=85 Identities=26% Similarity=0.424 Sum_probs=74.3
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc-cC--Cc
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FK--GK 98 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-~~--g~ 98 (114)
.....||||-|.....|++++.+|.+ ||.+++|. +.....|.++||+||.|.++.+|..||..|||.. +- .-
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~t----vlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECT----VLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcc-cCCcceeE----EecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 35678999999999999999999999 99999884 5566678999999999999999999999999976 33 45
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|.||.++++.
T Consensus 92 SLVVK~ADTdkER 104 (371)
T KOG0146|consen 92 SLVVKFADTDKER 104 (371)
T ss_pred ceEEEeccchHHH
Confidence 7999999988753
No 61
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.32 E-value=8e-12 Score=90.27 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=75.2
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
.+|||.+|...+...+|+.+|++ ||.|...+ .+.+..+-..+||+||++++.++|.+||..||.+.++|+.|.|+-
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSK-yGKVvGAK---VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSK-YGKVVGAK---VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cceeeeccccchhhhHHHHHHHH-hcceecee---eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 58999999999999999999999 99998887 567777777899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
+|....
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 997644
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=8.2e-12 Score=90.75 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCCeEEecCCCCC--C--------CHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 22 NPASVLYIKNLAKD--V--------VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 22 ~~~~~l~v~nlp~~--~--------~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
.++.+|++.|+... + ..++|++.|.+ ||.|..+.++....+..++...|++||+|.+.++|.+|+..||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 46778999999632 1 12578999999 9999988643211223345667999999999999999999999
Q ss_pred CcccCCceEEEEeccC
Q 033648 92 GYVFKGKPMIIQFGRN 107 (114)
Q Consensus 92 g~~~~g~~l~v~~a~~ 107 (114)
|..|+|+.|.|.|...
T Consensus 486 Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 486 GRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCEECCeEEEEEEeCH
Confidence 9999999999999764
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=7.3e-12 Score=87.87 Aligned_cols=77 Identities=29% Similarity=0.515 Sum_probs=69.2
Q ss_pred EEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEecc
Q 033648 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 27 l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 106 (114)
+||.||+++++..+|...|+. ||.|.+|+++ ....| ++|| ||+|.+++.|.+|+..+||..+.|++|.|..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~----~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSE-FGNILSCKVA----TDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeecCCCcccCcHHHHHHHHh-hcCeeEEEEE----EcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 999999999999999999999 9999999742 33444 8999 999999999999999999999999999998887
Q ss_pred CCCC
Q 033648 107 NPAA 110 (114)
Q Consensus 107 ~~~~ 110 (114)
.+..
T Consensus 152 ~~~e 155 (369)
T KOG0123|consen 152 RKEE 155 (369)
T ss_pred chhh
Confidence 6544
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=1.9e-11 Score=85.85 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=70.1
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
+.+||+|+|+++.+.+|+.++...-|.|.+|+ +....+|+.++||.|+|+++|.+++|++.||.+.+.||+|.|.-
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yve----Ll~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVE----LLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeee----eecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 45999999999999999999996589998886 33457899999999999999999999999999999999999985
Q ss_pred cc
Q 033648 105 GR 106 (114)
Q Consensus 105 a~ 106 (114)
..
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 44
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=3.7e-12 Score=93.24 Aligned_cols=90 Identities=16% Similarity=0.359 Sum_probs=77.4
Q ss_pred CcCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 16 KNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 16 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
+...+...++.|.|.|+|+..+..+++.+|.. ||.+..++++- ....+.++|||||.|-+..+|.+|+.+|.++.+
T Consensus 605 K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPK---K~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl 680 (725)
T KOG0110|consen 605 KKKSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPK---KIGKGAHRGFGFVDFLTPREAKNAFDALGSTHL 680 (725)
T ss_pred cccccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccch---hhcchhhccceeeeccCcHHHHHHHHhhcccce
Confidence 34444556789999999999999999999999 99999887422 234556789999999999999999999999999
Q ss_pred CCceEEEEeccCCC
Q 033648 96 KGKPMIIQFGRNPA 109 (114)
Q Consensus 96 ~g~~l~v~~a~~~~ 109 (114)
.||.|.++||+.+.
T Consensus 681 yGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 681 YGRRLVLEWAKSDN 694 (725)
T ss_pred echhhheehhccch
Confidence 99999999999875
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=1.5e-11 Score=82.37 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=70.4
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++++++|+|+.+.++..+++..|.+ ||.+.+|.+ -++|+||.|.-.++|..|++.|+|.++.|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdi-----------vkdy~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDI-----------VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcc-cCCceeeee-----------ecceeEEEEeeccchHHHHhccccccccccee
Confidence 457789999999999999999999999 999988763 46899999999999999999999999999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
+|+++.++-
T Consensus 143 ~vq~stsrl 151 (346)
T KOG0109|consen 143 HVQLSTSRL 151 (346)
T ss_pred eeeeecccc
Confidence 999988653
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.21 E-value=6.5e-11 Score=83.26 Aligned_cols=76 Identities=29% Similarity=0.360 Sum_probs=67.5
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.+..|+|+|.|||.++|+..|+.-|.. +|.+.+..+ ...|++++ .|.|.+.++|++|+..|+|..+.||.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre-~G~v~yadi------me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFRE-IGHVLYADI------MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHh-ccceehhhh------hccCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 356789999999999999999999999 999987753 24677777 899999999999999999999999999
Q ss_pred EEEec
Q 033648 101 IIQFG 105 (114)
Q Consensus 101 ~v~~a 105 (114)
.|.++
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99874
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=6.4e-11 Score=86.94 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=67.2
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+.|||.||+++++.+.+...|.+ .|.|.++.+... .++. .-.+.|||||+|.+.++|++|++.|+|+.+.|+.|.|+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k-~G~VlS~~I~kk-kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSK-QGTVLSIEISKK-KDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHh-cCeEEEEEEecc-ccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34999999999999999999999 999988753211 1111 12255999999999999999999999999999999999
Q ss_pred ecc
Q 033648 104 FGR 106 (114)
Q Consensus 104 ~a~ 106 (114)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 998
No 69
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.16 E-value=3.4e-10 Score=75.05 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=75.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
....+.|+|.|||..+..++|+++|.. ||.+..+ .+.....|.+.|.|-|.|...++|.+|++.|||..++|++|
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~----~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAE-FGELKRV----AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHH-hccceEE----eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 344578999999999999999999999 9976654 45566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.+....+.+.+
T Consensus 155 k~~~i~~~~~~ 165 (243)
T KOG0533|consen 155 KIEIISSPSQS 165 (243)
T ss_pred eeEEecCcccc
Confidence 99988766554
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.13 E-value=1.9e-10 Score=85.35 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=69.3
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
++|||||.|+..+++.+|..+|+. ||.|.++.+ -..++||||.+....+|++|+..|+...+.++.|+|.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~l---------i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIIL---------IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHh-cccceeEee---------ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 479999999999999999999999 999998752 1368999999999999999999999999999999999
Q ss_pred eccCCC
Q 033648 104 FGRNPA 109 (114)
Q Consensus 104 ~a~~~~ 109 (114)
||....
T Consensus 491 Wa~g~G 496 (894)
T KOG0132|consen 491 WAVGKG 496 (894)
T ss_pred eeccCC
Confidence 998654
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.12 E-value=3.6e-10 Score=77.29 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceec----ccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAA----KSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
++.|||+|||.++|.+++.++|++ +|.|..- +....++....|+.+|=|+++|...++...|+..|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356999999999999999999999 9988531 11124555567999999999999999999999999999999999
Q ss_pred EEEEeccC
Q 033648 100 MIIQFGRN 107 (114)
Q Consensus 100 l~v~~a~~ 107 (114)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999983
No 72
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.12 E-value=7.2e-10 Score=72.08 Aligned_cols=85 Identities=24% Similarity=0.417 Sum_probs=67.2
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC---CceE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK---GKPM 100 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---g~~l 100 (114)
-++|||.+||.++...+|..+|.. |..-..+.+ ....+.....+.+||+.|.+...|.+|+..|||..|+ +..|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslL--K~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLL--KYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhcc-CCCccceee--eeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 479999999999999999999998 765544432 2222222334589999999999999999999999986 6789
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
++++||.....
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999966443
No 73
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.11 E-value=1.2e-10 Score=85.80 Aligned_cols=86 Identities=26% Similarity=0.347 Sum_probs=77.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
+..++||++||++.++++.|-..|+. ||.+.++++||....-.....+.|+||.|-+..+|++|+..|+|..+.+..++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44578999999999999999999999 99999999877655555667789999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
+-|+++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999753
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=5.5e-10 Score=76.41 Aligned_cols=76 Identities=30% Similarity=0.429 Sum_probs=64.2
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC-cccCCceE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG-YVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g-~~~~g~~l 100 (114)
....+|||++|...+++.+|+..|.+ ||.|..+.+. ..+++|||+|.+.+.|+.|....-. ..++|..|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~---------~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRIL---------PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhh-cCCeeeEEee---------cccccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 33578999999999999999999999 9999876421 1356999999999999998866555 44899999
Q ss_pred EEEeccC
Q 033648 101 IIQFGRN 107 (114)
Q Consensus 101 ~v~~a~~ 107 (114)
.|.|+.+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999998
No 75
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=6.5e-10 Score=78.16 Aligned_cols=75 Identities=29% Similarity=0.430 Sum_probs=67.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
..|||| +++++..|.+.|++ +|.+.+++ ..++. + +-|||||-|.+.++|++|+..||...+.|+++.+.|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~-~~~v~s~r---vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~ 71 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSP-AGPVLSIR---VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMW 71 (369)
T ss_pred CceecC---CcCChHHHHHHhcc-cCCceeEE---EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeeh
Confidence 468999 89999999999999 99999887 34555 4 889999999999999999999999999999999999
Q ss_pred ccCCC
Q 033648 105 GRNPA 109 (114)
Q Consensus 105 a~~~~ 109 (114)
+.-+.
T Consensus 72 s~rd~ 76 (369)
T KOG0123|consen 72 SQRDP 76 (369)
T ss_pred hccCC
Confidence 87664
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=5.9e-10 Score=77.08 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=72.0
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
.++||..+.++.++++++.+|.. ||.|..|++ -+....+.++||+|++|.+..+...|+..||-..++|.-|+|-.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~L---Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEA-FGEIVKCQL---ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHh-hcceeeEEe---eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 58999999999999999999999 999999973 34566778899999999999999999999999999999999987
Q ss_pred ccCC
Q 033648 105 GRNP 108 (114)
Q Consensus 105 a~~~ 108 (114)
+-+.
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 7644
No 77
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.95 E-value=2.2e-08 Score=57.85 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=66.6
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhc-CCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC----Cc
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLF-GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK----GK 98 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~-G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~----g~ 98 (114)
.+||.|.|+|...+.++|.+.+...+ |..+-+. ...+..++.+.|||||-|.+++.+..-...++|..+. .+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~Y---LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFY---LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEE---eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 36899999999999999998887632 3333333 4567778889999999999999999999999999874 56
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
.+.|.+|+-+
T Consensus 78 vc~i~yAriQ 87 (97)
T PF04059_consen 78 VCEISYARIQ 87 (97)
T ss_pred EEEEehhHhh
Confidence 7888888743
No 78
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=71.66 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=70.0
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
...+||.|.|...++.+.|-..|.+ |-.-...+ .+++.++|+++||+||.|.+..++.+|+.+|+|..++.++|.+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~ak---viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAK---VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred ccceeecccccccccHHHHHHHHHh-ccchhhcc---ccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 3468999999999999999999999 88766665 5789999999999999999999999999999999999999877
Q ss_pred Ee
Q 033648 103 QF 104 (114)
Q Consensus 103 ~~ 104 (114)
.-
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 53
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=5.3e-09 Score=74.31 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=66.9
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
...+|||.|||++++.++|+++|.. ||.|....+ .++. ..++..+||||+|.+...++.|+.+ +-..+++++|.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I--~vr~-~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGI--QVRS-PGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhh-cccccccce--EEec-cCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEE
Confidence 3456999999999999999999999 999987763 3333 2345559999999999999999965 466789999999
Q ss_pred EeccCCC
Q 033648 103 QFGRNPA 109 (114)
Q Consensus 103 ~~a~~~~ 109 (114)
+--++..
T Consensus 362 eek~~~~ 368 (419)
T KOG0116|consen 362 EEKRPGF 368 (419)
T ss_pred Eeccccc
Confidence 9877644
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=1.5e-09 Score=78.00 Aligned_cols=71 Identities=31% Similarity=0.473 Sum_probs=63.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
-+..+|+|-|||..++.++|...|+. ||+|..++ .+-..++.+||+|.+..+|++|+++|++.++.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir--------~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIR--------ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHh-hcchhhhh--------cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999 99998754 3556789999999999999999999999999998887
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=1.9e-09 Score=74.04 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..+.+||++|+|.++++.|+..|.. ||.+..|. .++++.++++++|+||+|.+.+...+++.. .-+.+.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~---vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCV---VMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEE---EeccCCCCCcccccceecCCCcchheeecc-cccccCCccccc
Confidence 5678999999999999999999988 99999987 455777899999999999998888877642 346689999998
Q ss_pred EeccCCCCC
Q 033648 103 QFGRNPAAA 111 (114)
Q Consensus 103 ~~a~~~~~~ 111 (114)
.-|.+..+.
T Consensus 80 k~av~r~~~ 88 (311)
T KOG4205|consen 80 KRAVSREDQ 88 (311)
T ss_pred eeccCcccc
Confidence 888877654
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.85 E-value=7.7e-09 Score=71.04 Aligned_cols=83 Identities=24% Similarity=0.331 Sum_probs=72.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
...+||+.||.++++.+++..|.+ ||.|..+. .+++..+...++|+||.|.++++..+++ ...-+.++|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~---~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVV---IMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhc-cceeEeeE---EeecccccccccceeeEeccccccceec-ccceeeecCceeeEe
Confidence 458999999999999999999999 99887765 5678889999999999999999999886 456778999999999
Q ss_pred eccCCCCC
Q 033648 104 FGRNPAAA 111 (114)
Q Consensus 104 ~a~~~~~~ 111 (114)
.|.++...
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 99987654
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=1.4e-08 Score=67.24 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+...+||+|+....+.+++...|.. +|.+..+. ...+...+..++|+||+|.+.+....++. |+|..+.|+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~t---i~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVT---VPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCcccee---eeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 355678999999999999999999999 99997665 45677778899999999999999999997 99999999999
Q ss_pred EEEeccCC
Q 033648 101 IIQFGRNP 108 (114)
Q Consensus 101 ~v~~a~~~ 108 (114)
.|.+.+..
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 99987754
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.76 E-value=3.1e-08 Score=55.23 Aligned_cols=70 Identities=26% Similarity=0.426 Sum_probs=46.3
Q ss_pred CeEEecCCCCCCCHhH----HHHHHhhhcCC-ceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 25 SVLYIKNLAKDVVPDD----FFFVFGSLFGS-IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~----l~~~f~~~~G~-i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
+.|+|.|||-+.+... |++++.. +|. +..+ ..+.|++.|.+.+.|.+|.+.|+|-.+.|+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v-------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSV-------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEE-------------eCCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 4699999999888765 4555555 653 2211 3478999999999999999999999999999
Q ss_pred EEEEeccCC
Q 033648 100 MIIQFGRNP 108 (114)
Q Consensus 100 l~v~~a~~~ 108 (114)
|.|+|....
T Consensus 69 I~v~~~~~~ 77 (90)
T PF11608_consen 69 ISVSFSPKN 77 (90)
T ss_dssp -EEESS--S
T ss_pred EEEEEcCCc
Confidence 999999543
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.4e-08 Score=66.18 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=63.6
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
..+|||+||+...+.+++.+|.. ||.+..+.+ ..+|+||.|.+.-+|..|+..+||..+.|-.+.|++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~m-----------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADM-----------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-cccccccee-----------ecccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 35899999999999999999999 999876531 347889999999999999999999999998899999
Q ss_pred ccC
Q 033648 105 GRN 107 (114)
Q Consensus 105 a~~ 107 (114)
+..
T Consensus 70 ~r~ 72 (216)
T KOG0106|consen 70 ARG 72 (216)
T ss_pred ccc
Confidence 984
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=2.9e-08 Score=71.67 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.+.++|++||...++.++.++... ||.+...+ .+.+..+|.++||||-+|.+......|+..|||..++++.|.|+
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~---lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFR---LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHh-cccchhhe---eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 467999999999999999999999 99998876 46777889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 033648 104 FGRNPA 109 (114)
Q Consensus 104 ~a~~~~ 109 (114)
.|....
T Consensus 365 ~A~~g~ 370 (500)
T KOG0120|consen 365 RAIVGA 370 (500)
T ss_pred hhhccc
Confidence 987543
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.61 E-value=2.4e-07 Score=65.07 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=66.5
Q ss_pred CCeEEecCCC-CCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 24 ASVLYIKNLA-KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 24 ~~~l~v~nlp-~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
++.|.|.||. ..+|.+.|..+|+- ||.|.++++ +.+ .+--|+|+|.+...|+.|++.|+|..+.|++|+|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgv-YGdVqRVki---l~n-----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrv 367 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGV-YGDVQRVKI---LYN-----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRV 367 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhh-hcceEEEEe---eec-----CCcceeeeecchhHHHHHHHHhhcceecCceEEE
Confidence 5788899987 56899999999999 999999873 222 2367999999999999999999999999999999
Q ss_pred EeccCCC
Q 033648 103 QFGRNPA 109 (114)
Q Consensus 103 ~~a~~~~ 109 (114)
.++|...
T Consensus 368 t~SKH~~ 374 (492)
T KOG1190|consen 368 TLSKHTN 374 (492)
T ss_pred eeccCcc
Confidence 9999653
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.57 E-value=3e-07 Score=64.60 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=72.8
Q ss_pred cCCCCCcCCCC-CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 11 SLPMFKNYTAG-NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 11 ~~~~~~~~~~~-~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
+.|..+++... +|+.++...|+|+++++++++..|.. -|..... ...-++.+.++++.+.+.|+|-.|+..
T Consensus 400 kkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vka-------fkff~kd~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 400 KKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKA-------FKFFQKDRKMALPQLESVEEAIQALID 471 (492)
T ss_pred cCcccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEe-------eeecCCCcceeecccCChhHhhhhccc
Confidence 34566777665 88899999999999999999999998 6654211 123456788999999999999999999
Q ss_pred hCCcccCCc-eEEEEeccC
Q 033648 90 VNGYVFKGK-PMIIQFGRN 107 (114)
Q Consensus 90 l~g~~~~g~-~l~v~~a~~ 107 (114)
++.+.+++. .|+|+|++.
T Consensus 472 ~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 472 LHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccccCCCCceEEEEeecc
Confidence 999998765 899999885
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=3.8e-08 Score=63.99 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=68.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
+...+|||+|+...++++-|.++|.. .|.|..+. +...+.++.+ ||||.|.++.+..-|++.+||-.+.+++++
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~----ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVG----IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEe----CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 34578999999999999999999999 99987654 3333455556 999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
+++-...
T Consensus 81 ~~~r~G~ 87 (267)
T KOG4454|consen 81 RTLRCGN 87 (267)
T ss_pred cccccCC
Confidence 9887654
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.46 E-value=2e-07 Score=60.92 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=53.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
..+.+|||.||.+.+++++|+.+|+. |..-..++ .......+.||++|++.+.|..|+..|+|..+
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~-------~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSR-YPGFHILK-------IRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEE-------EecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 34568999999999999999999999 76543222 12333458999999999999999999999876
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.28 E-value=1.3e-06 Score=60.46 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=64.0
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce-EEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP-MII 102 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~-l~v 102 (114)
..++|||||-|++|.++|.+.+.. .|.-.-..+. .+.++.+|.++|||++...+....++.++.|.-..++|.. ..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmK-FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMK-FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhh-hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 357999999999999999998887 7744322211 3557778999999999999999999999999999999975 444
Q ss_pred Eecc
Q 033648 103 QFGR 106 (114)
Q Consensus 103 ~~a~ 106 (114)
.+-|
T Consensus 158 ~~NK 161 (498)
T KOG4849|consen 158 SYNK 161 (498)
T ss_pred ccch
Confidence 4433
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=2e-06 Score=62.34 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=53.5
Q ss_pred HHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEeccCC
Q 033648 40 DFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 108 (114)
Q Consensus 40 ~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 108 (114)
+++..+++ ||.|..|+++....+......-|..||+|.+.++|++|..+|+|.++.+|.+...|...+
T Consensus 425 dvr~ec~k-~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 425 DVRTECAK-FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHhcc-cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 46677778 999988875443222333445578899999999999999999999999999999987644
No 93
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.18 E-value=3.5e-06 Score=61.74 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=66.6
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc---
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF--- 95 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~--- 95 (114)
....+++.|+|.||-.-+|.-+|+.++....|.|... |+ .+.+..|||.|.+.++|.+...+|||..+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~----Wm-----DkIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF----WM-----DKIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHH----HH-----HHhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 3457789999999999999999999999735655443 21 35688999999999999999999999875
Q ss_pred CCceEEEEeccCC
Q 033648 96 KGKPMIIQFGRNP 108 (114)
Q Consensus 96 ~g~~l~v~~a~~~ 108 (114)
+++.|.+.|+..+
T Consensus 510 NPK~L~adf~~~d 522 (718)
T KOG2416|consen 510 NPKHLIADFVRAD 522 (718)
T ss_pred CCceeEeeecchh
Confidence 6778999998744
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.16 E-value=7.9e-07 Score=64.29 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=70.7
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
..++|+..++...+..+|.++|+. +|.|..+. .|.+..++.++|.+||+|.+.++...|+ .|.|..+.|-+|.|+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~-~gkVrdVr---iI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSI-VGKVRDVR---IIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHh-hcCcceeE---eeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 367888889989999999999999 99999886 6888889999999999999999999998 899999999999998
Q ss_pred ecc
Q 033648 104 FGR 106 (114)
Q Consensus 104 ~a~ 106 (114)
...
T Consensus 254 ~sE 256 (549)
T KOG0147|consen 254 LSE 256 (549)
T ss_pred ccH
Confidence 654
No 95
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.14 E-value=4.8e-06 Score=57.63 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceeccc----ce-eEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKS----GL-IVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~----~~-~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
....++||-+||..++.+.+..+|.+ +|.|..-+. +. ..+++.|+..++=|.|.|.+...|++|+.-+++..+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44568999999999999999999999 998864221 11 2356679999999999999999999999999999999
Q ss_pred CceEEEEeccCCC
Q 033648 97 GKPMIIQFGRNPA 109 (114)
Q Consensus 97 g~~l~v~~a~~~~ 109 (114)
+..|+|.+|.-..
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987554
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.08 E-value=1.1e-05 Score=55.81 Aligned_cols=78 Identities=19% Similarity=0.422 Sum_probs=60.1
Q ss_pred CCeEEecCCCCCCCHhH------HHHHHhhhcCCceecccceeEEeccCCC---cee--EEEEEeCCHHHHHHHHHHhCC
Q 033648 24 ASVLYIKNLAKDVVPDD------FFFVFGSLFGSIDAAKSGLIVKLMQEGR---MRG--QAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~------l~~~f~~~~G~i~~~~~~~~~~~~~~~~---~~g--~~fv~f~~~~~a~~a~~~l~g 92 (114)
..-+||-+||+.+..++ -.++|++ ||.|..+ +.++++.. ..+ -.||.|.+.++|.+||.+.+|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KI-----vvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKI-----VVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhh-ccceeEE-----EecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 35689999999887766 2578888 9998754 33433311 112 339999999999999999999
Q ss_pred cccCCceEEEEeccC
Q 033648 93 YVFKGKPMIIQFGRN 107 (114)
Q Consensus 93 ~~~~g~~l~v~~a~~ 107 (114)
..++||.|+..+..+
T Consensus 188 s~~DGr~lkatYGTT 202 (480)
T COG5175 188 SLLDGRVLKATYGTT 202 (480)
T ss_pred ccccCceEeeecCch
Confidence 999999999988764
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.07 E-value=4.3e-05 Score=53.56 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=68.8
Q ss_pred CCCCCCeEEecCCCCC-CCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 20 AGNPASVLYIKNLAKD-VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
...+++.+.|.+|... +..+.|..+|-- ||.|..+++|. | ..|.|.|++.+....++|+..||+..+.|.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFmk------T--k~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFMK------T--KPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEee------c--ccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 3567899999999854 667889999999 99999887432 1 357899999999999999999999999999
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
+|.|.++++.
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 9999999865
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.06 E-value=2.7e-05 Score=56.00 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
....|.+.+|||..|+++|..+|+. ++ |.. .+....+|+..|=|||+|.+.++++.|++ .+...+..|-|.|
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~-~~-I~~-----~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEV 80 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSN-CG-IEN-----LEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEV 80 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhc-Cc-eeE-----EEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEE
Confidence 3456888999999999999999988 65 332 23455679999999999999999999995 5666777787888
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
--+...
T Consensus 81 f~~~~~ 86 (510)
T KOG4211|consen 81 FTAGGA 86 (510)
T ss_pred EccCCc
Confidence 766543
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.06 E-value=2.7e-05 Score=50.89 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=65.1
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-Cc
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~ 98 (114)
..+|...+++.|+|..++.+.+...|.. |..-..+++ + -..++.|||+|.+...|..|...++|..+- ..
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~q-f~g~keir~---i-----~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~ 212 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQ-FPGFKEIRL---I-----PPRSGIAFVEFLSDRQASAAQQALQGFKITKKN 212 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhh-CcccceeEe---c-----cCCCceeEEecchhhhhHHHhhhhccceeccCc
Confidence 3577889999999999999999999998 877766541 1 124689999999999999999999998876 78
Q ss_pred eEEEEecc
Q 033648 99 PMIIQFGR 106 (114)
Q Consensus 99 ~l~v~~a~ 106 (114)
.+.|.+|+
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 88888875
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.02 E-value=1.8e-05 Score=46.54 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=42.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc-----ccCCc
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY-----VFKGK 98 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~-----~~~g~ 98 (114)
++.|.|.+++..++.++|+..|.. ||.|.++.+ .. .-.-|||.|.+.+.|+.|+..+... .+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~-------~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~ 70 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDF-------SR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGK 70 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-S-S--EEEEE---------T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSS
T ss_pred CeEEEEecCCCCcCHHHHHHHHHh-cCCcceEEe-------cC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCc
Confidence 367899999999999999999999 998876531 22 2357899999999999999877654 35666
Q ss_pred eEEEEe
Q 033648 99 PMIIQF 104 (114)
Q Consensus 99 ~l~v~~ 104 (114)
.+.++.
T Consensus 71 ~~~~~v 76 (105)
T PF08777_consen 71 EVTLEV 76 (105)
T ss_dssp SEEEE-
T ss_pred eEEEEE
Confidence 666554
No 101
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.99 E-value=4.4e-05 Score=52.87 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCCCeEEecCCCC----CCC-------HhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHh
Q 033648 22 NPASVLYIKNLAK----DVV-------PDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLV 90 (114)
Q Consensus 22 ~~~~~l~v~nlp~----~~~-------~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 90 (114)
...++|.+.|+=. .-+ .++|.+...+ ||.+..+. +.+ ....|.+-|.|.+.+.|..|++.|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K-~G~v~~vv----v~d---~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEK-FGQVRKVV----VYD---RHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHH-hCCcceEE----Eec---cCCCceeEEEeCChHHHHHHHHHh
Confidence 4457888888732 112 3567788889 99998763 333 246789999999999999999999
Q ss_pred CCcccCCceEEEEeccCC
Q 033648 91 NGYVFKGKPMIIQFGRNP 108 (114)
Q Consensus 91 ~g~~~~g~~l~v~~a~~~ 108 (114)
+|..+.||.|..+.....
T Consensus 335 ~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDGK 352 (382)
T ss_pred cCeeecceEEEEEEeCCc
Confidence 999999999999877644
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=8.7e-06 Score=53.34 Aligned_cols=73 Identities=26% Similarity=0.321 Sum_probs=62.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
...+.+.+.|++..+.+.+|...|.+ +|.+.... ...+++||+|++.+++..|+..++|..+.++.|.
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~-----------~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVD-----------ARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcc-cCCCchhh-----------hhccccceeehhhhhhhhcchhccchhhcCceee
Confidence 34577889999999999999999999 99873221 1568999999999999999999999999999999
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
+...-
T Consensus 165 ~~~~~ 169 (216)
T KOG0106|consen 165 VEKNS 169 (216)
T ss_pred ecccC
Confidence 95443
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.93 E-value=6.4e-06 Score=56.37 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=69.3
Q ss_pred CCeEE-ecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 24 ASVLY-IKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 24 ~~~l~-v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..++| +++++..+++++|+..|.. +|.+..++ ...+..++..++++++.|.....+..++.. +...+.++++.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r---~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVR---LPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred cccceeecccccccchHHHhhhccC-cCcceeec---cCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 34455 9999999999999988888 99887765 344667899999999999999999999876 788899999999
Q ss_pred EeccCCCC
Q 033648 103 QFGRNPAA 110 (114)
Q Consensus 103 ~~a~~~~~ 110 (114)
....+...
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 99887643
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.87 E-value=7.2e-06 Score=54.55 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=57.1
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEecc-------CCCce----eEEEEEeCCHHHHHHHHHHhC
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-------EGRMR----GQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-------~~~~~----g~~fv~f~~~~~a~~a~~~l~ 91 (114)
..-.+|+++||+.+...-|+++|+. ||.|.++.+ ...+.. .|..+ .=|+|+|.+-..|.++...||
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~-yGeVGRvyl--qpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYL--QPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHh-ccccceEEe--cchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3457999999999999999999999 999987642 111111 12222 335789999999999999999
Q ss_pred CcccCCce
Q 033648 92 GYVFKGKP 99 (114)
Q Consensus 92 g~~~~g~~ 99 (114)
+.+|+|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99999874
No 105
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.84 E-value=1.3e-05 Score=53.38 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=51.5
Q ss_pred hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEecc
Q 033648 39 DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 39 ~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 106 (114)
+++...|...||.+..++ +.+...-...|-++|.|...++|++|+..|||..+.|++|++.+..
T Consensus 83 Ed~f~E~~~kygEiee~~----Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN----VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhh----hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 456666663399997764 3344455667889999999999999999999999999999999875
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.84 E-value=9.9e-05 Score=53.20 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
+...|.+.+||+.+++++|.++|+. .--+... + .+.....++..+=|||+|.+.+.|+.|+. -|...++.|-|.|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~g-i--~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEv 176 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPDG-I--LLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEV 176 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcC-Ccccccc-e--eeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEe
Confidence 4568999999999999999999987 5444331 1 22233456678999999999999999984 4556677776666
Q ss_pred Eec
Q 033648 103 QFG 105 (114)
Q Consensus 103 ~~a 105 (114)
--+
T Consensus 177 F~S 179 (510)
T KOG4211|consen 177 FRS 179 (510)
T ss_pred ehh
Confidence 433
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.81 E-value=0.00016 Score=54.36 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=64.8
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCce-ecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSID-AAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+.|-+.|+|++++-+++-++|.. |-.+. ++ .++....|...|=|-|.|.+.++|.+|...+++.+|..+.+++.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~d-Y~~~p~sI----~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFND-YEPDPNSI----RIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcc-cccCCCce----eEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 48999999999999999999988 76553 33 35566678888999999999999999999999999999998886
Q ss_pred e
Q 033648 104 F 104 (114)
Q Consensus 104 ~ 104 (114)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.44 E-value=0.00019 Score=55.08 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC--c
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--K 98 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g--~ 98 (114)
..+.+.+++++|+++.....+..+|.. ||.+..+. -.+...|++|.|.+...++.|++.|-|..++| +
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Id---------y~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIID---------YRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhc-cCcceeee---------cccCCcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 456678999999999999999999999 99986542 12355799999999999999999999999987 4
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
.+.|.||...
T Consensus 522 r~rvdla~~~ 531 (975)
T KOG0112|consen 522 RLRVDLASPP 531 (975)
T ss_pred ccccccccCC
Confidence 6999998854
No 109
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.43 E-value=0.00022 Score=50.89 Aligned_cols=74 Identities=30% Similarity=0.421 Sum_probs=58.2
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc-cCCceEEEE
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FKGKPMIIQ 103 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-~~g~~l~v~ 103 (114)
+.+|++||.+..+..+++.+|.. .-......++ -..||+|+.+.+...|.+|++.++|.. +.|+.+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~-ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGD-AKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhcc-ccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 35899999999999999999876 4222222211 135899999999999999999999976 899999988
Q ss_pred eccCC
Q 033648 104 FGRNP 108 (114)
Q Consensus 104 ~a~~~ 108 (114)
..-++
T Consensus 72 ~sv~k 76 (584)
T KOG2193|consen 72 HSVPK 76 (584)
T ss_pred chhhH
Confidence 76654
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.42 E-value=0.00067 Score=41.91 Aligned_cols=77 Identities=18% Similarity=0.355 Sum_probs=48.7
Q ss_pred CCCCCCCeEEecCCCC------CCCH---hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 19 TAGNPASVLYIKNLAK------DVVP---DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~------~~~~---~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
..+||..++.|.=..+ .+.+ .+|.+.|.. ||.+.-++ . ..+.-+|+|.+.++|.+|+ .
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvR------f-----v~~~mwVTF~dg~sALaal-s 88 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVR------F-----VGDTMWVTFRDGQSALAAL-S 88 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEE------E-----ETTCEEEEESSCHHHHHHH-H
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEE------E-----eCCeEEEEECccHHHHHHH-c
Confidence 4467888877775551 2322 357777878 89764322 1 1245689999999999998 7
Q ss_pred hCCcccCCceEEEEeccCC
Q 033648 90 VNGYVFKGKPMIIQFGRNP 108 (114)
Q Consensus 90 l~g~~~~g~~l~v~~a~~~ 108 (114)
++|.+++|+.|+|++..++
T Consensus 89 ~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 89 LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp GCCSEETTEEEEEEE----
T ss_pred cCCcEECCEEEEEEeCCcc
Confidence 9999999999999987765
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00078 Score=49.68 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCeEEecCCCCCCC------HhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 23 PASVLYIKNLAKDVV------PDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~------~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
-.+.+.|-|+|---. ..-|..+|++ +|.+.... +-....|..+||.|++|.+..+|+.|++.|||+.++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~----~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMY----YPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHh-hcccccee----eccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 346788999985322 2346788888 99775433 112234568999999999999999999999999976
Q ss_pred C-ceEEEEec
Q 033648 97 G-KPMIIQFG 105 (114)
Q Consensus 97 g-~~l~v~~a 105 (114)
- +...|..-
T Consensus 132 knHtf~v~~f 141 (698)
T KOG2314|consen 132 KNHTFFVRLF 141 (698)
T ss_pred ccceEEeehh
Confidence 4 45555543
No 112
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.36 E-value=0.00066 Score=46.41 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=50.0
Q ss_pred HhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEeccC
Q 033648 38 PDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107 (114)
Q Consensus 38 ~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 107 (114)
++++++.+.+ ||.+..|-+ ..... .-.-....||+|...++|.+|+-.|||..|+||.+...|.+-
T Consensus 300 ede~keEceK-yg~V~~vii---feip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVII---FEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHh-hcceeeEEE---EecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 3567888999 999976631 11111 111235679999999999999999999999999999988763
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.34 E-value=0.001 Score=46.95 Aligned_cols=80 Identities=25% Similarity=0.360 Sum_probs=61.0
Q ss_pred CCCCCeEEec--CCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-C
Q 033648 21 GNPASVLYIK--NLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-G 97 (114)
Q Consensus 21 ~~~~~~l~v~--nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g 97 (114)
..++..|.++ |--..+|.+-|..+..+ .|.+.++- + .+++ .-.|.|+|.+.+.|++|...|||..|. |
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIv----I-fkkn---gVQAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIV----I-FKKN---GVQAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEE----E-Eecc---ceeeEEeechhHHHHHHHhhccccccccc
Confidence 3445555555 44467889999999999 99998763 2 2333 347999999999999999999999975 3
Q ss_pred -ceEEEEeccCCC
Q 033648 98 -KPMIIQFGRNPA 109 (114)
Q Consensus 98 -~~l~v~~a~~~~ 109 (114)
..|+|+|||+..
T Consensus 188 CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 188 CCTLKIEYAKPTR 200 (494)
T ss_pred ceeEEEEecCcce
Confidence 479999999763
No 114
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.32 E-value=0.00035 Score=49.34 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=60.3
Q ss_pred eEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 26 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
.|.|.||.+..+.+++..+|.- .|.|..+.+.-.+.+.........|||.|.+...+..|. .|..+.+-|+.|.|--
T Consensus 9 vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 7999999999999999999999 999998875433333334456789999999999888885 6777777776655543
No 115
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.28 E-value=0.00097 Score=34.27 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=39.0
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHH
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRAL 87 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 87 (114)
+.|-|.+.+++.. +.+...|.. ||.|....+ +....+.++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~---------~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFAS-FGEIVDIYV---------PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHh-cCCEEEEEc---------CCCCcEEEEEECCHHHHHhhC
Confidence 4577888887655 445568888 999976542 134678999999999999885
No 116
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.25 E-value=0.0029 Score=39.03 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCCCCCeEEecCCCCCC----CHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 19 TAGNPASVLYIKNLAKDV----VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~----~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
+..+|-.+|.|.=|..++ +-..+...++. ||.|.++. -..+.-|.|.|.+..+|..|+.+++. .
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT----------~cGrqsavVvF~d~~SAC~Av~Af~s-~ 148 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVT----------LCGRQSAVVVFKDITSACKAVSAFQS-R 148 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceee----------ecCCceEEEEehhhHHHHHHHHhhcC-C
Confidence 345666778776554443 33456677778 99998763 12456799999999999999999987 5
Q ss_pred cCCceEEEEecc
Q 033648 95 FKGKPMIIQFGR 106 (114)
Q Consensus 95 ~~g~~l~v~~a~ 106 (114)
.-|..+++.|-.
T Consensus 149 ~pgtm~qCsWqq 160 (166)
T PF15023_consen 149 APGTMFQCSWQQ 160 (166)
T ss_pred CCCceEEeeccc
Confidence 566677777643
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0015 Score=47.57 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=45.3
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccC--CCcee---EEEEEeCCHHHHHHHHHHhC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRG---QAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~--~~~~g---~~fv~f~~~~~a~~a~~~l~ 91 (114)
++.+|||+||+++++++|...|.. ||.+.- . |..+.... -..+| |+|+.|.++.+....+.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~-FGs~~V-d--WP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQ-FGSVKV-D--WPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhccc-ccceEe-e--cCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 468999999999999999999999 998731 1 11101111 11345 99999999888777665544
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.10 E-value=0.0014 Score=46.34 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++..+|.+.+||...+.+++..+|.. |..-..-+ ...+.....|+..|=|||+|.+++.|.+|....+.+...+|-|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~-gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGD-FATDIRFQ-GVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHH-Hhhhcccc-eeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 445678999999999999999999988 76432210 0023344567778999999999999999999998888878777
Q ss_pred EEEec
Q 033648 101 IIQFG 105 (114)
Q Consensus 101 ~v~~a 105 (114)
.|--+
T Consensus 355 Evfp~ 359 (508)
T KOG1365|consen 355 EVFPC 359 (508)
T ss_pred EEeec
Confidence 76544
No 119
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.09 E-value=0.00039 Score=49.57 Aligned_cols=70 Identities=26% Similarity=0.335 Sum_probs=53.2
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceeccccee--EEeccCCC--------ceeEEEEEeCCHHHHHHHHHHhC
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLI--VKLMQEGR--------MRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~--~~~~~~~~--------~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
-++.+|.+-|||-+-.-+.|.++|+. +|.|..+++.-. +-....+. .+-+|+|+|...+.|.+|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 47889999999999888999999999 999988763211 00011111 25789999999999999998775
Q ss_pred C
Q 033648 92 G 92 (114)
Q Consensus 92 g 92 (114)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.07 E-value=0.0034 Score=36.56 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEE----eccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVK----LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~----~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
.+.|.|-+.|+. ..+.+...|++ ||.|.+..-.+.-. .........+..|.|.+..+|.+|+ .-||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 345788889987 56778888999 99985431000000 0001123468899999999999999 57999998864
Q ss_pred -EEEEecc
Q 033648 100 -MIIQFGR 106 (114)
Q Consensus 100 -l~v~~a~ 106 (114)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466654
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0042 Score=45.34 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=53.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
+-.|..|+|||+||.-++..+|-.+|..-||.|..+.+ -.+++-...+|-|=|.|++..+--+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI---DtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI---DTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe---ccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34778999999999999999999999966999987653 22334456778888999999998888853
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.64 E-value=0.011 Score=42.12 Aligned_cols=64 Identities=27% Similarity=0.370 Sum_probs=45.9
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
-.+.+.+||++.+..++..+|.+ --.+...........+..|+..|=||+.|..+++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~-~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGP-PCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCC-CCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 35788999999999999999974 21121111111233444788889999999999999999854
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.44 E-value=0.0019 Score=49.55 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=65.7
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
..++|.|.|+.-|.++++.++.+ +|.+.+..+ ...+.|+.+|.+++.|.+..++.+++...+...+.-+.+.|+.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~----vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASK-TGNVTSLRL----VTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccc-cCCccccch----hhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 46999999999999999999999 999987652 2345788999999999999999999888887777777777777
Q ss_pred ccC
Q 033648 105 GRN 107 (114)
Q Consensus 105 a~~ 107 (114)
+++
T Consensus 812 snp 814 (881)
T KOG0128|consen 812 SNP 814 (881)
T ss_pred cCC
Confidence 554
No 124
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.31 E-value=0.023 Score=36.70 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=51.9
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
...+.|.+||+.-++.+|+..+.+ .|.++...+ . .-+++.|+|...|+.+-|+..|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv----~------rDg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADV----Q------RDGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHh-hCCeeeeee----e------cccceeeeeeehhhHHHHHHhhcccccc
Confidence 357999999999999999999999 999875431 1 1258899999999999999999987754
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.31 E-value=0.0087 Score=40.25 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=52.9
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
..|||.||...++.+.+...|+. ||.+... .++....++..+=++|.|...-.+..|+..+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~-fg~~e~a----v~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRR-FGPIERA----VAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhh-cCccchh----eeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 78999999999999999999999 9999765 233444567778889999999999999988853
No 126
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.25 E-value=0.027 Score=30.23 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=43.3
Q ss_pred CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 35 DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 35 ~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
.++.++++.-+.+ |+-. .+....+|- ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~-y~~~-------~I~~d~tGf-----YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRK-YRWD-------RIRDDRTGF-----YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhc-CCcc-------eEEecCCEE-----EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677889999988 8753 344545544 89999999999999999999988777654
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.00026 Score=54.05 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=54.1
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
+++|++||+..+.+.++...|.+ +|.+..+++. ....++..+|.||+.|...+.+.+|+....+..
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCc-cchhhhHHHH---HHhhccccccceeeEeecCCchhhhhhhhhhhh
Confidence 57899999999999999999999 9988776632 233467889999999999999999986544433
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.22 E-value=0.011 Score=37.96 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=48.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCc---eecccceeEEecc-CCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSI---DAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i---~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
.....|.|++||+..++++++..+.+.++.- .... ...-... .......|||.|.+.++...-...++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~--g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQ--GKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEE--EEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEe--cCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3456899999999999999888555423322 1111 0000111 12235789999999999999999999987632
Q ss_pred -----ceEEEEeccC
Q 033648 98 -----KPMIIQFGRN 107 (114)
Q Consensus 98 -----~~l~v~~a~~ 107 (114)
....|++|--
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 2456777653
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.13 E-value=0.13 Score=30.52 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=43.6
Q ss_pred CCeEEecCCCCC-CCHhHHHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 24 ASVLYIKNLAKD-VVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 24 ~~~l~v~nlp~~-~~~~~l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
++.+.+--.|+. ++.+.|..+.++ +- .+..++ .++ ....++..+++.|.+.++|......+||..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~-~~~~i~~~r---iir--d~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAP-FREDIEHIR---IIR--DGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhc-ccccEEEEE---Eee--CCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444455554 445556544444 33 333332 222 233477899999999999999999999999754
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.06 E-value=0.031 Score=31.41 Aligned_cols=54 Identities=22% Similarity=0.400 Sum_probs=38.6
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
..++++ .|..+...+|.++|++ ||.|. +. |+ .-.-|||.....+.+..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFsp-fG~I~-Vs---Wi-------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSP-FGQIY-VS---WI-------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCC-CCCEE-EE---EE-------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhcc-CCcEE-EE---EE-------cCCcEEEEeecHHHHHHHHHHhc
Confidence 345555 9999999999999999 99873 11 21 23469999999999999998876
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.019 Score=42.42 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=54.9
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc---C-C
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF---K-G 97 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~---~-g 97 (114)
.+.+++-|.|+|...|...|...-.+..|.-+-+. ...+-.+....|||||-|.+.+.+..+.+++||+.+ + .
T Consensus 386 ~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlY---LPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~ 462 (549)
T KOG4660|consen 386 CPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLY---LPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSE 462 (549)
T ss_pred CchhhhHhhccCchhhHHhhhhhhccccCccceEE---eccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcce
Confidence 33455666666666666555554333344444343 234445666789999999999999999999999873 3 3
Q ss_pred ceEEEEecc
Q 033648 98 KPMIIQFGR 106 (114)
Q Consensus 98 ~~l~v~~a~ 106 (114)
+.+.+.||+
T Consensus 463 Kia~itYAr 471 (549)
T KOG4660|consen 463 KIASITYAR 471 (549)
T ss_pred eeeeeehhh
Confidence 456777776
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.78 E-value=0.0019 Score=49.87 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
.+.+||+||++..+++.+++..|.. +|.+..+. +....-+.--.|+|+.|.+...+..|+..+.|..|....+.+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VD----iKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVD----IKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhh-hccccccc----cccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3468999999999999999999999 99998764 333333444579999999999999999999998876556555
Q ss_pred Eec
Q 033648 103 QFG 105 (114)
Q Consensus 103 ~~a 105 (114)
.+.
T Consensus 446 glG 448 (975)
T KOG0112|consen 446 GLG 448 (975)
T ss_pred ccc
Confidence 555
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.44 E-value=0.14 Score=37.33 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=55.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
++.|.|-.+|..++..++..|..+..-.|..++ .++ ..-..+-.++|.|.+.++|..--..+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~ir---ivR--d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIR---IVR--DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeE---Eee--cCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999999999999999999887344555554 344 233456788999999999999999999999764
No 134
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.11 E-value=0.23 Score=26.34 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=38.1
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhc-C--CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHh
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLF-G--SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLV 90 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~-G--~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 90 (114)
..|+|.++. ..+.++++.+|.. | . ....++ |+-+ .-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~-y~~~~~~~~IE---WIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSE-YFDEEGPFRIE---WIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHH-hcccCCCceEE---EecC-------CcEEEEECCHHHHHHHHHcC
Confidence 468899986 5778889999988 6 1 222333 3322 23678999999999998764
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.07 E-value=0.028 Score=42.39 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=62.6
Q ss_pred cCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 17 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
..++-++..++||+|+...+..+-++..+.. +|.|..++. -.|||-.|..+....+|+..++-..++
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr------------~~fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKR------------DKFGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhh------------hhhcccchhhHHHHHHHHHHhcccCCC
Confidence 4556678899999999999999999999999 998865541 129999999999999999999988898
Q ss_pred CceEEEEe
Q 033648 97 GKPMIIQF 104 (114)
Q Consensus 97 g~~l~v~~ 104 (114)
|..+.+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 88776654
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.96 E-value=0.0063 Score=42.27 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=55.7
Q ss_pred CeEEecCCCCCCCHhHH---HHHHhhhcCCceecccceeEEeccC-----CCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 25 SVLYIKNLAKDVVPDDF---FFVFGSLFGSIDAAKSGLIVKLMQE-----GRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l---~~~f~~~~G~i~~~~~~~~~~~~~~-----~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
.-+||-+|+.....+.+ .+.|.. ||.+..+. +...+ ....+-++|.|...++|..||...+|..++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~-----~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIV-----KNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEe-----ecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 45788889877665544 356666 78776542 12211 112345899999999999999999999999
Q ss_pred CceEEEEeccCC
Q 033648 97 GKPMIIQFGRNP 108 (114)
Q Consensus 97 g~~l~v~~a~~~ 108 (114)
|+.|++.+..+.
T Consensus 152 g~~lka~~gttk 163 (327)
T KOG2068|consen 152 GRALKASLGTTK 163 (327)
T ss_pred hhhhHHhhCCCc
Confidence 999888776644
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.89 E-value=0.03 Score=42.72 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
...+.+|||-.||..++...+..+|..-+-..+.+. +...-+++.++-|||.|...+.+..|..--+-..++.+.|
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~----lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~i 506 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE----LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRII 506 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeE----eccCCcccccchhhheeccccccchhhhcccccccCceEE
Confidence 344578999999999999999999987233333343 3344578888999999999888888765555555677778
Q ss_pred EEE
Q 033648 101 IIQ 103 (114)
Q Consensus 101 ~v~ 103 (114)
+|.
T Consensus 507 rv~ 509 (944)
T KOG4307|consen 507 RVD 509 (944)
T ss_pred Eee
Confidence 876
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.87 E-value=0.23 Score=27.06 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=34.9
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEec
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 105 (114)
..++..+|..++.. .+.+..-.+. .+. -...|+||+.... .+..++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~-~~gi~~~~IG-~I~-----I~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICN-EAGIPGRDIG-RID-----IFDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHT-CTTB-GGGEE-EEE-----E-SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHh-ccCCCHHhEE-EEE-----EeeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677888888887 6556443321 111 1345788888654 788899999999999999999875
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.29 E-value=0.055 Score=42.14 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=57.0
Q ss_pred EecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc--CCceEEEEec
Q 033648 28 YIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF--KGKPMIIQFG 105 (114)
Q Consensus 28 ~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 105 (114)
++-|.+-..+...|-.++++ ||.+.++. . =+.-..|.|+|.+.+.|-.|..+++|.++ -|-+.+|.+|
T Consensus 302 ~~~nn~v~~tSssL~~l~s~-yg~v~s~w----t-----lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSD-YGSVASAW----T-----LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhcccccchHHHHHHHHHh-hcchhhhe----e-----cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 33444556677789999999 99987652 1 12346899999999999999999999884 5778999999
Q ss_pred cCCCCC
Q 033648 106 RNPAAA 111 (114)
Q Consensus 106 ~~~~~~ 111 (114)
++...-
T Consensus 372 k~~~~~ 377 (1007)
T KOG4574|consen 372 KTLPMY 377 (1007)
T ss_pred cccccc
Confidence 976543
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.06 E-value=0.11 Score=33.52 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=41.7
Q ss_pred HhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC--CcccCCceEEEEeccCC
Q 033648 38 PDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN--GYVFKGKPMIIQFGRNP 108 (114)
Q Consensus 38 ~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~~ 108 (114)
...|+.+|.. ++.+.... .. ++-+-..|.|.+.+.|.+|...|+ +..+.|..+++.|+...
T Consensus 9 ~~~l~~l~~~-~~~~~~~~----~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFST-YDPPVQFS----PL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHT-T-SS-EEE----EE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHh-cCCceEEE----Ec-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4678889988 88775432 11 133557889999999999999999 99999999999998643
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.79 E-value=0.46 Score=33.02 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=45.2
Q ss_pred EEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 27 LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 27 l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
+-|-++|+.- ...+...|.+ +|.|.. +.++....|-+|.|.+..+|++|| ..||..|+|..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~-cG~Vvk---------hv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSR-CGEVVK---------HVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred EEEeccCccc-hhHHHHHHHh-hCeeee---------eecCCCCceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 5566777653 3456778889 998742 234455568999999999999999 57999988864
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.74 E-value=0.26 Score=36.95 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhh-hcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC--ccc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGS-LFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVF 95 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~ 95 (114)
-+....|.+.++-||..+-.++++.+|.. .+-.+.+|++ . .. .-=||+|.+..+|+.|.+.|.- ..|
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscef--a-------~N-~nWyITfesd~DAQqAykylreevk~f 239 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEF--A-------HN-DNWYITFESDTDAQQAYKYLREEVKTF 239 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee--e-------ec-CceEEEeecchhHHHHHHHHHHHHHhh
Confidence 34456688999999999999999999964 1233334431 1 11 1237999999999999877654 336
Q ss_pred CCceEEEEe
Q 033648 96 KGKPMIIQF 104 (114)
Q Consensus 96 ~g~~l~v~~ 104 (114)
-|++|...+
T Consensus 240 qgKpImARI 248 (684)
T KOG2591|consen 240 QGKPIMARI 248 (684)
T ss_pred cCcchhhhh
Confidence 666665543
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.96 E-value=0.21 Score=36.64 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=54.8
Q ss_pred CeEEecCCCCC-CCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 25 SVLYIKNLAKD-VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 25 ~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+.|-+--.|+. .+.++|...|.+ ||.|..|.+. ...-.|.|+|.+..+|-.|- ..++..|+++.|+|-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~-fG~i~n~qv~---------~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQ-FGEIENIQVD---------YSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhh-cCcccccccc---------Cchhhheeeeeccccccchh-ccccceecCceeEEE
Confidence 33444444544 356789999999 9999877632 22456889999999986664 678999999999999
Q ss_pred eccCCC
Q 033648 104 FGRNPA 109 (114)
Q Consensus 104 ~a~~~~ 109 (114)
|-++..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 988743
No 144
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=90.68 E-value=1.3 Score=30.78 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=34.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCH
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSV 80 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~ 80 (114)
+.+|++||+.++...+|+..+.+ .|...- .+. .....+-||.-|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~-~~~~pm-----~is---wkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRK-RECTPM-----SIS---WKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHh-cCCCce-----eEe---eecCCcceeEecCCc
Confidence 56999999999999999999998 776521 111 123467889988553
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.74 E-value=0.42 Score=33.04 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=56.6
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..+++|++++...+.+.+...++.. +|...... .........+++++++.|...+.+..++.........++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~-~g~~~~~~---~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSE-AGLRVDAR---SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchh-hcCcccch---hhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 4678999999999888877777777 78654443 2333456778999999999999999999654444555555444
Q ss_pred Ee
Q 033648 103 QF 104 (114)
Q Consensus 103 ~~ 104 (114)
.+
T Consensus 163 dl 164 (285)
T KOG4210|consen 163 DL 164 (285)
T ss_pred cc
Confidence 33
No 146
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.05 E-value=4.6 Score=29.47 Aligned_cols=55 Identities=25% Similarity=0.333 Sum_probs=43.4
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
..|-|.++|...-.++|...|.. |+.- .++++ |+ ...++|..|++...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~-yq~k-gfdIk-Wv-------DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFET-YQNK-GFDIK-WV-------DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHH-hhcC-CceeE-Ee-------ecceeEEeecchHHHHHHhhc
Confidence 67999999999999999999999 8754 23332 22 245799999999999999865
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.11 E-value=0.075 Score=38.48 Aligned_cols=78 Identities=10% Similarity=0.212 Sum_probs=61.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
..++.+-|.|+|+...++.+..++.. ||.+..|.. ..++. -....-++|...+.+..|+..++|..+....++
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~q-yg~ve~~eq--vnt~~----etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQ--VNTDS----ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhh--hccch----HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 34567899999999999999999999 999987752 11111 123345789999999999999999999888888
Q ss_pred EEecc
Q 033648 102 IQFGR 106 (114)
Q Consensus 102 v~~a~ 106 (114)
+.|-.
T Consensus 151 ~~YiP 155 (584)
T KOG2193|consen 151 VGYIP 155 (584)
T ss_pred cccCc
Confidence 87654
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=76.81 E-value=0.47 Score=34.18 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=51.1
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
.+++|.+|+..+...++-+.|.. +|.+.+... ..+....+|-+.|....+...|+ .++|..+.-....+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r-~Gev~ya~~-------ask~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFER-KGEVSYAHT-------ASKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRR 220 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhh-cchhhhhhh-------hccCCCcchhhhHhhhhhHHHHH-Hhcchhhhhhhhhh
Confidence 57999999999999999999999 999876541 23444566778998888888887 46776665333333
No 149
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=71.73 E-value=7.6 Score=26.98 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCcccCCceEEEEeccCCCC
Q 033648 73 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110 (114)
Q Consensus 73 ~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 110 (114)
|||.|++..+|..|.+.+.... ++.+.++.|....+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655443 34567777765443
No 150
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.12 E-value=50 Score=25.51 Aligned_cols=90 Identities=27% Similarity=0.259 Sum_probs=58.3
Q ss_pred CCCCCCCeEEecCCCCC-CCHhHHHHHHhh---hcCCceecccce-----------eEEec-------------------
Q 033648 19 TAGNPASVLYIKNLAKD-VVPDDFFFVFGS---LFGSIDAAKSGL-----------IVKLM------------------- 64 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~---~~G~i~~~~~~~-----------~~~~~------------------- 64 (114)
....++.+|-|-|+.|+ +...+|.-+|.. .-|.|.++.+-. .+..+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 33566788999999986 556777766664 124555543100 00000
Q ss_pred -------------cCCCc-eeEEEEEeCCHHHHHHHHHHhCCcccC--CceEEEEeccCC
Q 033648 65 -------------QEGRM-RGQAFVTFPSVELAHRALNLVNGYVFK--GKPMIIQFGRNP 108 (114)
Q Consensus 65 -------------~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~~~ 108 (114)
.-++. .-||.|+|.+.+.|.+.-..++|.++. +..|-+.|-..+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 00112 368899999999999999999999975 566777765433
No 151
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.66 E-value=0.91 Score=34.13 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEe-ccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
.|++++.|+++.++..+|..++.. +-....+- +.. ....+...++++.|+-......|+.+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~-i~~~lrfa----ls~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKG-IPGFLRFA----LSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhcc-Cchheeee----ccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 478999999999999999999987 54443221 111 112234567788898887888888889987765443
No 152
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.47 E-value=53 Score=24.69 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=45.6
Q ss_pred CcCCCCCCCCeEEecCCCCCCCH---hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 033648 16 KNYTAGNPASVLYIKNLAKDVVP---DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 16 ~~~~~~~~~~~l~v~nlp~~~~~---~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
.+.+|++++--+ ||||+.-... ..+..+-.+ ||.+-.+++ ...-.|..++.+.|+.++. -||
T Consensus 25 ~~lPPGP~~lPi-IGnl~~l~~~~~h~~~~~ls~~-yGpi~tl~l------------G~~~~Vviss~~~akE~l~-~~d 89 (489)
T KOG0156|consen 25 RNLPPGPPPLPI-IGNLHQLGSLPPHRSFRKLSKK-YGPVFTLRL------------GSVPVVVISSYEAAKEVLV-KQD 89 (489)
T ss_pred CCCCcCCCCCCc-cccHHHcCCCchhHHHHHHHHH-hCCeEEEEe------------cCceEEEECCHHHHHHHHH-hCC
Confidence 455666664444 8888854332 345555446 999865432 1224678889999999985 578
Q ss_pred cccCCceE
Q 033648 93 YVFKGKPM 100 (114)
Q Consensus 93 ~~~~g~~l 100 (114)
..+.+|+.
T Consensus 90 ~~fa~Rp~ 97 (489)
T KOG0156|consen 90 LEFADRPD 97 (489)
T ss_pred ccccCCCC
Confidence 88888875
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=51.01 E-value=40 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=31.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCcccCCc-eEEEEeccC
Q 033648 70 RGQAFVTFPSVELAHRALNLVNGYVFKGK-PMIIQFGRN 107 (114)
Q Consensus 70 ~g~~fv~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~ 107 (114)
.+..-|-|.+.+.|..|...+++..+.|. .+..-+|.+
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 34556789999999999999999999988 788777764
No 154
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=49.77 E-value=21 Score=24.21 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCce
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSID 53 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~ 53 (114)
+..+...++|+-|+|...+++.|.++.+. .|-+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsq-lg~vq 68 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQ-LGHVQ 68 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHH-hhhhh
Confidence 44566788999999999999999999988 87554
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=49.11 E-value=63 Score=22.76 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEec-------cCCCceeEEEEEeCCHHHHHH----HHHHhCC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM-------QEGRMRGQAFVTFPSVELAHR----ALNLVNG 92 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~----a~~~l~g 92 (114)
.+.|.+.|+...++--.+...|.+ ||.|.++.+ +... ...+......+.|-+.+.|.. .++.|..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL---~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYL---IKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhc-cCceeEEEE---ecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 355778899988888888888989 999998863 2222 122334667788888776643 3344443
Q ss_pred --cccCCceEEEEecc
Q 033648 93 --YVFKGKPMIIQFGR 106 (114)
Q Consensus 93 --~~~~g~~l~v~~a~ 106 (114)
..+....|.+.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 23778888888876
No 156
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.93 E-value=22 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHH
Q 033648 39 DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81 (114)
Q Consensus 39 ~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~ 81 (114)
++|.+.|.+.||.-. .+-..|.|+|++|.+.-
T Consensus 89 edL~~EF~~~~~~~~-----------~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNI-----------IQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHhccccc-----------CCccCCCeeEEehhHHH
Confidence 456666665466421 12357899999997653
No 157
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=43.32 E-value=75 Score=19.25 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=28.0
Q ss_pred CCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHH
Q 033648 35 DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAH 84 (114)
Q Consensus 35 ~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~ 84 (114)
.++.++|++-+++-|-.-.+.-+.+.+..+. +|++.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 5677888887776444322222222233322 4667788865 77777665
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=41.90 E-value=32 Score=22.23 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceec
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAA 55 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~ 55 (114)
......+++++++..++...+...|.. +|.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 255 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRA 255 (306)
T ss_pred ccccceeeccccccccchhHHHHhccc-cccceee
Confidence 455678999999999999999999999 9988543
No 159
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.35 E-value=50 Score=17.61 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.4
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 71 GQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 71 g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
.+.++.|.+..+|-+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 35789999999999988887765543
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.99 E-value=35 Score=24.77 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=44.6
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEec---c--CCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM---Q--EGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~---~--~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
+.+.|.+||+..+..++.+-..+ +-.- +. +.... . .....+.++|-|...++...-...++|+.+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p-~~~~--v~---~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINP-FPEH--VN---WEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCC-Cccc--cc---hheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 45779999999999888776655 4321 11 11111 1 1223578899999999988888888887753
No 161
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.74 E-value=55 Score=22.98 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=25.9
Q ss_pred CCCCCeEEecCCCCC------------CCHhHHHHHHhhhcCCceeccc
Q 033648 21 GNPASVLYIKNLAKD------------VVPDDFFFVFGSLFGSIDAAKS 57 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~------------~~~~~l~~~f~~~~G~i~~~~~ 57 (114)
+....++|+.++|-. .+++-|+..|.. ||.|..+.+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~ea-fg~ir~vdi 193 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEA-FGEIRNVDI 193 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHH-hccceecCC
Confidence 344467888888732 345679999999 999987664
No 162
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.49 E-value=23 Score=20.10 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=20.1
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHH
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVF 45 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f 45 (114)
.....++.++|||....+++|+..+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4556789999999999988887654
No 163
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=35.90 E-value=1.1e+02 Score=18.90 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHHhhhcCCce-ecccceeEEec-cCCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSID-AAKSGLIVKLM-QEGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~-~~~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..+|++-+.+.|+..+ +.-+.+.+... ..|.+.|||.| |.+.+.+..
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35678899888887566221 21110111111 13445566654 777666553
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=35.36 E-value=73 Score=16.86 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.0
Q ss_pred hHHHHHHhhhcCCceec
Q 033648 39 DDFFFVFGSLFGSIDAA 55 (114)
Q Consensus 39 ~~l~~~f~~~~G~i~~~ 55 (114)
.+++.+|+. .|.|.-+
T Consensus 9 ~~iR~~fs~-lG~I~vL 24 (62)
T PF15513_consen 9 AEIRQFFSQ-LGEIAVL 24 (62)
T ss_pred HHHHHHHHh-cCcEEEE
Confidence 578999999 9998633
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.10 E-value=88 Score=17.68 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFP 78 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~ 78 (114)
..-+||||++..+.+.-+..+... .+.-.. ++--....-.||.|-.+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~-~~~G~a------~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEW-IGDGSA------VMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhh-CCCccE------EEEEccCCCCCEEEEEeC
Confidence 445999999988776655555543 333221 111122336688887763
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=34.42 E-value=51 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCcccCCceEEEEeccC
Q 033648 81 ELAHRALNLVNGYVFKGKPMIIQFGRN 107 (114)
Q Consensus 81 ~~a~~a~~~l~g~~~~g~~l~v~~a~~ 107 (114)
..|+.|..+|++....|+.|.|.||..
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~ 31 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH 31 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc
Confidence 457778889999999999999999864
No 167
>PHA01632 hypothetical protein
Probab=34.36 E-value=60 Score=16.81 Aligned_cols=21 Identities=10% Similarity=0.244 Sum_probs=16.8
Q ss_pred EEecCCCCCCCHhHHHHHHhh
Q 033648 27 LYIKNLAKDVVPDDFFFVFGS 47 (114)
Q Consensus 27 l~v~nlp~~~~~~~l~~~f~~ 47 (114)
+.|-..|..-|+++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445688999999999988765
No 168
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=33.92 E-value=91 Score=18.09 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=27.1
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCC
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~ 79 (114)
..-+|||+++..+.+.-+..+-.. ++.-..+ +... +..-.||.|-.+..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~-~~~G~av-----mv~~-~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQL-AEEGNVV-----MAWA-TNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHh-CCCCcEE-----EEEc-CCCCCCcEEEecCC
Confidence 455999998877665544444443 5432211 1122 22334899887754
No 169
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.57 E-value=1.1e+02 Score=18.25 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHH
Q 033648 36 VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAH 84 (114)
Q Consensus 36 ~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 84 (114)
.+.+.|...|+. |..+. ++ .+.... .+.|+++|.|.+.-..-
T Consensus 29 ~~~~~l~~~l~~-f~p~k-v~---~l~~~~--gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 29 MSNEELLDKLAE-FNPLK-VK---PLYGKQ--GHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp --SHHHHHHHHH----SE-EE---EEEETT--EEEEEEEEE--SSHHHH
T ss_pred cCHHHHHHHHHh-cCCce-eE---ECcCCC--CCcEEEEEEECCChHHH
Confidence 345789999999 88764 22 233332 56799999997655433
No 170
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=32.00 E-value=37 Score=15.90 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=9.1
Q ss_pred CCCCHhHHHHHHhh
Q 033648 34 KDVVPDDFFFVFGS 47 (114)
Q Consensus 34 ~~~~~~~l~~~f~~ 47 (114)
.++++++|+..|.+
T Consensus 19 ~Dtd~~~Lk~vF~~ 32 (36)
T PF11411_consen 19 VDTDEDQLKEVFNR 32 (36)
T ss_dssp S---HHHHHHHHHC
T ss_pred ccCCHHHHHHHHHH
Confidence 36788999999876
No 171
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.58 E-value=94 Score=17.63 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCC
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS 79 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~ 79 (114)
...-+|||+++..+.+.-... ..+.+ +.... .++...+..-.||.|-.+..
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~-v~~~~--~~~G~---avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDY-LAQHC--PPKGS---LVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHH-HHHhC--CCCcc---EEEEEeCCCCCCcEEEecCC
Confidence 345599998887765543333 33312 21222 11122233345788876654
No 172
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=29.68 E-value=31 Score=10.96 Aligned_cols=6 Identities=50% Similarity=0.949 Sum_probs=3.2
Q ss_pred EecCCC
Q 033648 28 YIKNLA 33 (114)
Q Consensus 28 ~v~nlp 33 (114)
||.|.|
T Consensus 2 ~i~nCP 7 (9)
T PF00220_consen 2 YIRNCP 7 (9)
T ss_pred ccccCC
Confidence 455555
No 173
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=29.66 E-value=21 Score=19.14 Aligned_cols=24 Identities=4% Similarity=0.023 Sum_probs=16.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHH
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVF 45 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f 45 (114)
.-+.+++||.+|..+-.+.-..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 445789999999877765443333
No 174
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.05 E-value=31 Score=26.17 Aligned_cols=41 Identities=37% Similarity=0.594 Sum_probs=35.9
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEeccCC
Q 033648 68 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 108 (114)
Q Consensus 68 ~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 108 (114)
+...++++.|.+...+.+|+..++|..+.+..+.++.+.+.
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 34589999999999999999999999999988888877654
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=83 Score=21.68 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhh
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGS 47 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~ 47 (114)
....|+|||++++..-+..++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhc
Confidence 35679999999999999888865
No 176
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=28.30 E-value=35 Score=24.47 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=36.4
Q ss_pred HhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 033648 38 PDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY 93 (114)
Q Consensus 38 ~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 93 (114)
...+.+++.+ .|.+..-.. ..-.+.|.+|+..-..++++++++.+.+.
T Consensus 275 ~p~iF~~i~~-~G~v~~~EM-------~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQK-AGNVEREEM-------YRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHH-hcCCCHHHH-------HHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4677888888 897754321 12246789999999999999999999875
No 177
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.06 E-value=80 Score=17.43 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=22.1
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 67 GRMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 67 ~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
...+||-||+=.+..+...|+..+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4578999999999999999987666543
No 178
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.54 E-value=1.2e+02 Score=17.03 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=36.5
Q ss_pred eEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 26 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
.++|..++..++-++|.+-....|.....--+.+...+ ..|- .+.+++.++.+.|++.+.-..
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D-EEGD-----p~tiSS~~EL~EA~rl~~~n~ 72 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID-EEGD-----PCTISSQMELEEAFRLYELNK 72 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC-CCCC-----ceeecCHHHHHHHHHHHHhcC
Confidence 36788888888877765555442333322111112222 2233 378899999999988766433
No 179
>PRK11901 hypothetical protein; Reviewed
Probab=27.50 E-value=2.4e+02 Score=20.29 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=31.9
Q ss_pred CCHhHHHHHHhhhcCCceecccceeEEe-ccCCCceeEE--EEEeCCHHHHHHHHHHhCCcc
Q 033648 36 VVPDDFFFVFGSLFGSIDAAKSGLIVKL-MQEGRMRGQA--FVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 36 ~~~~~l~~~f~~~~G~i~~~~~~~~~~~-~~~~~~~g~~--fv~f~~~~~a~~a~~~l~g~~ 94 (114)
..++.|..+..+ .+ +... +++. ...|+ ..|. +-.|.+.++|..|+..|....
T Consensus 254 s~~~~L~~f~~~-~~-L~~~----~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 254 SRSDTLNAYAKK-QN-LSHY----HVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCHHHHHHHHHH-cC-cCce----EEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 456777777766 54 3332 2332 22333 3444 458999999999999887543
No 180
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=26.27 E-value=91 Score=18.18 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=16.7
Q ss_pred cccCCceEEEEeccCCCCCCCC
Q 033648 93 YVFKGKPMIIQFGRNPAAAKPS 114 (114)
Q Consensus 93 ~~~~g~~l~v~~a~~~~~~~~~ 114 (114)
+++.|..|.|+++-+....+|+
T Consensus 83 Y~l~gd~L~vC~~~~g~~~RPt 104 (107)
T TIGR03067 83 YKLDGDTLTVCFSGGGDKPRPT 104 (107)
T ss_pred EEEcCCEEEEEECCCCCCCCCC
Confidence 4578899999998877655553
No 181
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.09 E-value=1.3e+02 Score=16.34 Aligned_cols=61 Identities=7% Similarity=-0.051 Sum_probs=35.0
Q ss_pred hHHHHHHhhhcCCc-eecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEecc
Q 033648 39 DDFFFVFGSLFGSI-DAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 39 ~~l~~~f~~~~G~i-~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 106 (114)
.++++.|.+ .|-- ..+. .+....++.....-+|+.....+... .|+=..++|..+.|+-..
T Consensus 2 ~~I~~~L~~-~G~~v~~i~---~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKD-IGFPVLFIH---NMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHH-cCCceeEEE---cccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 356777777 6643 3332 23333444455677777765433222 455566888888887544
No 182
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=23.05 E-value=1e+02 Score=14.49 Aligned_cols=16 Identities=25% Similarity=0.698 Sum_probs=12.4
Q ss_pred CCcccCCceEEEEecc
Q 033648 91 NGYVFKGKPMIIQFGR 106 (114)
Q Consensus 91 ~g~~~~g~~l~v~~a~ 106 (114)
-|..+.|.++.+.+.+
T Consensus 4 CG~~I~~eP~~~k~~~ 19 (37)
T PF08394_consen 4 CGGEITGEPIVVKIGN 19 (37)
T ss_pred cCCcccCCEEEEEECC
Confidence 4778889998888754
No 183
>PHA01782 hypothetical protein
Probab=22.00 E-value=1e+02 Score=19.74 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.1
Q ss_pred CCCCCCCHhHHHHHHhhhcCCce
Q 033648 31 NLAKDVVPDDFFFVFGSLFGSID 53 (114)
Q Consensus 31 nlp~~~~~~~l~~~f~~~~G~i~ 53 (114)
-+|.......|..+|.. ||.+.
T Consensus 62 aMPKGsRrnAL~~wlv~-~Gkv~ 83 (177)
T PHA01782 62 AMPKGSRRNALAEWLVK-FGKVQ 83 (177)
T ss_pred HccccchhhHHHHHHHH-hCCcc
Confidence 47888888999999999 99885
No 184
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.91 E-value=1.8e+02 Score=16.90 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc----CCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ----EGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..++++-+.+.++.-...- .+..-. .|.+.|||.| |.+.+.+..
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~v---vv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELV---VVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEE---EEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 46678888888877566322221 122222 2445566654 777666554
No 185
>PF14893 PNMA: PNMA
Probab=21.58 E-value=85 Score=22.47 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=21.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhh
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGS 47 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~ 47 (114)
++-..|.|.+||.+++++++.+.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 44566889999999999998877654
No 186
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=21.43 E-value=77 Score=16.84 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=16.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhC
Q 033648 70 RGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 70 ~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
+-.+|..|.+.++|...+..+.
T Consensus 44 kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 44 KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred hhhhccCCCCHHHHHHHHHHhh
Confidence 3457999999998888776543
No 187
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=21.31 E-value=1.3e+02 Score=24.45 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=25.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEeccC
Q 033648 70 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 107 (114)
Q Consensus 70 ~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 107 (114)
...|||+|++...|+.|-+..-+....+.. ++..|..
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~-~v~iapa 393 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKL-KVEIAPA 393 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcce-eeeecCC
Confidence 568999999999999988765454444433 4444443
No 188
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=20.55 E-value=1.7e+02 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=20.0
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhh
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGS 47 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 47 (114)
|....| +.-.|||||+++...-+.+.+..
T Consensus 124 w~d~~p-~~H~IGNLPf~i~~pliik~l~~ 152 (326)
T KOG0821|consen 124 WEDDPP-NVHIIGNLPFSVSTPLIIKWLEN 152 (326)
T ss_pred cccCCC-ceEEeccCCccccchHHHHHHhh
Confidence 444433 44559999999888877776655
No 189
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=20.35 E-value=2.1e+02 Score=17.63 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=16.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCC
Q 033648 70 RGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 70 ~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
.|...+-|.+.++|++......|
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~GG 136 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEHGG 136 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHTEE
T ss_pred CCCcccccCCHHHHHHHHHHcCC
Confidence 46889999999999999877643
No 190
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.33 E-value=1.2e+02 Score=18.88 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 69 MRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 69 ~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
.+||.||+....+++..++..+.+..
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 78999999998888888887777643
No 191
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.32 E-value=1.3e+02 Score=14.61 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.4
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGS 51 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~ 51 (114)
..+++.+........+|.+.... +|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~-~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEK-LGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHH-cCC
Confidence 45777777767788999999988 775
Done!