Query 033648
Match_columns 114
No_of_seqs 118 out of 1043
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.5E-25 8.5E-30 129.0 10.8 82 22-107 17-98 (99)
2 3egn_A RNA-binding protein 40; 99.9 1.7E-25 5.9E-30 137.2 9.7 108 2-110 23-132 (143)
3 2cpx_A Hypothetical protein FL 99.9 6.2E-25 2.1E-29 130.1 10.2 107 2-112 3-109 (115)
4 3s8s_A Histone-lysine N-methyl 99.9 1.5E-23 5E-28 123.7 11.1 83 22-108 4-86 (110)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.6E-23 1.2E-27 116.8 10.5 84 21-108 3-86 (87)
6 2dnz_A Probable RNA-binding pr 99.9 6.9E-23 2.4E-27 117.4 11.2 88 21-112 2-89 (95)
7 2cpz_A CUG triplet repeat RNA- 99.9 1.3E-22 4.3E-27 120.2 12.5 89 21-113 22-110 (115)
8 2lxi_A RNA-binding protein 10; 99.9 1.1E-23 3.6E-28 120.4 7.5 84 24-111 1-86 (91)
9 2la6_A RNA-binding protein FUS 99.9 1.3E-22 4.5E-27 117.2 12.0 85 18-106 7-99 (99)
10 1p27_B RNA-binding protein 8A; 99.9 8.8E-23 3E-27 119.2 10.9 86 20-109 19-104 (106)
11 2do4_A Squamous cell carcinoma 99.9 2.3E-22 8E-27 116.3 12.5 89 17-110 10-98 (100)
12 3mdf_A Peptidyl-prolyl CIS-tra 99.9 6.3E-23 2.2E-27 115.3 9.8 82 21-106 4-85 (85)
13 2cq0_A Eukaryotic translation 99.9 8.1E-23 2.8E-27 118.8 10.6 89 21-113 12-100 (103)
14 1u6f_A Tcubp1, RNA-binding pro 99.9 2.9E-22 9.7E-27 122.2 13.4 89 19-111 37-125 (139)
15 2jrs_A RNA-binding protein 39; 99.9 1.3E-22 4.5E-27 119.1 11.4 86 21-110 23-108 (108)
16 3md1_A Nuclear and cytoplasmic 99.9 1.4E-22 4.8E-27 113.4 10.6 82 24-109 1-82 (83)
17 1whw_A Hypothetical protein ri 99.9 1.1E-22 3.8E-27 117.5 10.5 87 21-111 5-91 (99)
18 2lkz_A RNA-binding protein 5; 99.9 3.2E-23 1.1E-27 119.3 8.0 82 22-107 7-94 (95)
19 3p5t_L Cleavage and polyadenyl 99.9 2.2E-23 7.6E-28 118.7 7.1 84 25-112 2-87 (90)
20 2cpf_A RNA binding motif prote 99.9 1.6E-22 5.5E-27 116.6 10.8 87 22-112 3-92 (98)
21 2dgs_A DAZ-associated protein 99.9 1.7E-22 5.7E-27 116.7 10.8 89 19-112 5-93 (99)
22 2dnh_A Bruno-like 5, RNA bindi 99.9 4.3E-22 1.5E-26 116.0 12.6 88 21-113 12-102 (105)
23 1x5s_A Cold-inducible RNA-bind 99.9 1.7E-22 5.8E-27 117.2 10.8 90 19-112 7-96 (102)
24 2x1f_A MRNA 3'-END-processing 99.9 9.3E-23 3.2E-27 117.2 9.4 84 23-110 1-84 (96)
25 2cqc_A Arginine/serine-rich sp 99.9 2.2E-22 7.5E-27 115.3 11.0 85 19-107 10-94 (95)
26 2dgo_A Cytotoxic granule-assoc 99.9 4.9E-22 1.7E-26 117.6 12.8 87 21-111 12-98 (115)
27 1x5u_A Splicing factor 3B subu 99.9 1.8E-22 6.2E-27 117.7 10.7 89 19-111 10-98 (105)
28 1x5t_A Splicing factor 3B subu 99.9 1.1E-22 3.8E-27 116.8 9.7 86 22-111 3-89 (96)
29 2dnm_A SRP46 splicing factor; 99.9 1.2E-22 4E-27 118.2 9.7 88 20-111 9-96 (103)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.4E-22 4.7E-27 117.6 9.9 89 20-112 8-96 (102)
31 2d9p_A Polyadenylate-binding p 99.9 5.3E-22 1.8E-26 115.4 12.0 87 19-111 10-96 (103)
32 2cph_A RNA binding motif prote 99.9 3.6E-22 1.2E-26 116.7 11.0 90 19-112 10-101 (107)
33 4f25_A Polyadenylate-binding p 99.9 3.6E-22 1.2E-26 118.4 11.0 82 23-110 4-85 (115)
34 2div_A TRNA selenocysteine ass 99.9 4.2E-22 1.4E-26 115.0 10.7 87 20-110 5-96 (99)
35 2cqp_A RNA-binding protein 12; 99.9 6.7E-22 2.3E-26 113.9 11.6 86 20-109 11-96 (98)
36 2e5h_A Zinc finger CCHC-type a 99.9 2.3E-22 7.9E-27 115.0 9.2 84 19-106 11-94 (94)
37 1x4h_A RNA-binding protein 28; 99.9 4E-22 1.4E-26 117.2 10.5 88 21-112 12-105 (111)
38 1oo0_B CG8781-PA, drosophila Y 99.9 2.4E-22 8.4E-27 118.1 9.2 87 20-110 22-108 (110)
39 2dng_A Eukaryotic translation 99.9 7.8E-22 2.7E-26 114.7 11.1 87 19-111 10-96 (103)
40 2dgp_A Bruno-like 4, RNA bindi 99.9 4.5E-22 1.5E-26 116.2 10.1 88 20-111 9-99 (106)
41 3ex7_B RNA-binding protein 8A; 99.9 2.8E-22 9.7E-27 120.4 9.4 90 18-111 16-105 (126)
42 2dgv_A HnRNP M, heterogeneous 99.9 1.1E-21 3.9E-26 111.7 11.0 87 20-112 4-90 (92)
43 2cpe_A RNA-binding protein EWS 99.9 6.6E-22 2.3E-26 116.7 10.1 87 21-111 12-106 (113)
44 2kxn_B Transformer-2 protein h 99.9 4E-22 1.4E-26 120.5 9.1 88 19-110 41-128 (129)
45 2ek1_A RNA-binding protein 12; 99.9 5.9E-22 2E-26 113.5 9.4 83 21-107 12-94 (95)
46 3ulh_A THO complex subunit 4; 99.9 1.2E-21 4.2E-26 114.5 10.9 84 19-107 24-107 (107)
47 2a3j_A U1 small nuclear ribonu 99.9 1.1E-21 3.7E-26 118.3 10.8 85 19-110 24-112 (127)
48 4a8x_A RNA-binding protein wit 99.9 7.7E-22 2.6E-26 111.5 9.3 85 22-110 2-87 (88)
49 2fy1_A RNA-binding motif prote 99.9 1.1E-21 3.9E-26 116.4 10.4 85 21-110 4-88 (116)
50 3ns6_A Eukaryotic translation 99.9 1.4E-22 4.7E-27 117.5 5.9 83 22-108 4-93 (100)
51 1wi8_A EIF-4B, eukaryotic tran 99.9 9.4E-22 3.2E-26 114.5 9.3 87 19-111 10-97 (104)
52 3r27_A HnRNP L, heterogeneous 99.9 8.3E-22 2.8E-26 113.9 8.9 83 17-109 14-98 (100)
53 2dgx_A KIAA0430 protein; RRM d 99.9 1.2E-21 4.2E-26 112.6 9.6 84 21-111 6-93 (96)
54 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.9E-21 1E-25 112.2 11.3 87 20-112 11-97 (103)
55 3n9u_C Cleavage and polyadenyl 99.9 1.2E-21 4.2E-26 121.8 10.3 82 23-108 54-137 (156)
56 2do0_A HnRNP M, heterogeneous 99.9 6.3E-21 2.2E-25 112.6 12.8 86 18-108 9-94 (114)
57 1p1t_A Cleavage stimulation fa 99.9 1.8E-21 6.2E-26 113.2 10.2 84 22-109 6-89 (104)
58 2dgw_A Probable RNA-binding pr 99.9 4.7E-21 1.6E-25 109.0 11.7 85 19-110 5-89 (91)
59 2ywk_A Putative RNA-binding pr 99.9 1.5E-21 5.2E-26 111.8 9.7 83 20-107 12-94 (95)
60 2khc_A Testis-specific RNP-typ 99.9 4.5E-22 1.5E-26 118.3 7.4 82 21-106 37-118 (118)
61 2cq3_A RNA-binding protein 9; 99.9 4.9E-21 1.7E-25 111.2 11.5 88 18-111 9-96 (103)
62 2kn4_A Immunoglobulin G-bindin 99.9 2.6E-21 9E-26 120.1 10.9 87 21-111 67-153 (158)
63 2fc8_A NCL protein; structure 99.9 4.4E-21 1.5E-25 111.2 11.1 85 20-111 11-95 (102)
64 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.6E-21 1.9E-25 118.5 12.3 85 22-110 37-121 (156)
65 2dhg_A TRNA selenocysteine ass 99.9 3E-21 1E-25 112.3 10.3 88 20-111 5-93 (104)
66 3ucg_A Polyadenylate-binding p 99.9 2.6E-21 8.9E-26 109.5 9.7 81 24-109 6-86 (89)
67 2kt5_A RNA and export factor-b 99.9 4.2E-21 1.4E-25 115.0 11.0 86 21-111 32-117 (124)
68 2dis_A Unnamed protein product 99.9 1.9E-21 6.5E-26 114.0 9.0 88 20-110 4-94 (109)
69 1x4a_A Splicing factor, argini 99.9 1.2E-20 3.9E-25 110.7 12.3 85 20-111 18-102 (109)
70 2m2b_A RNA-binding protein 10; 99.9 9.5E-22 3.3E-26 119.0 7.9 84 21-109 20-109 (131)
71 2dh8_A DAZ-associated protein 99.9 2.2E-21 7.4E-26 113.1 9.1 88 19-111 11-98 (105)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.9E-21 1.3E-25 120.4 10.9 87 21-111 69-155 (165)
73 1sjq_A Polypyrimidine tract-bi 99.9 1.1E-21 3.8E-26 114.4 7.6 82 20-111 12-95 (105)
74 2fc9_A NCL protein; structure 99.9 4E-21 1.4E-25 111.3 9.9 85 19-111 10-94 (101)
75 3s7r_A Heterogeneous nuclear r 99.9 5.8E-21 2E-25 107.8 10.1 81 20-105 7-87 (87)
76 2cqd_A RNA-binding region cont 99.9 3.1E-21 1.1E-25 114.3 9.4 85 20-109 13-97 (116)
77 1x5o_A RNA binding motif, sing 99.9 1.4E-20 4.7E-25 111.2 11.9 84 21-109 22-113 (114)
78 2cqg_A TDP-43, TAR DNA-binding 99.9 2.5E-20 8.4E-25 108.3 12.7 85 21-111 12-96 (103)
79 1fj7_A Nucleolin RBD1, protein 99.9 1.1E-21 3.9E-26 113.6 6.9 85 21-111 14-98 (101)
80 2ad9_A Polypyrimidine tract-bi 99.9 6.6E-21 2.2E-25 113.5 10.2 84 18-111 25-110 (119)
81 2jvr_A Nucleolar protein 3; RN 99.9 3.9E-21 1.4E-25 113.3 9.2 84 21-112 25-109 (111)
82 1x4e_A RNA binding motif, sing 99.9 3.9E-22 1.3E-26 112.2 4.5 82 21-106 2-83 (85)
83 2dnq_A RNA-binding protein 4B; 99.9 6.6E-21 2.3E-25 108.2 9.7 80 20-111 4-83 (90)
84 1s79_A Lupus LA protein; RRM, 99.9 2.5E-21 8.5E-26 112.8 8.0 82 20-107 7-88 (103)
85 2lea_A Serine/arginine-rich sp 99.9 1.6E-21 5.4E-26 118.7 7.2 87 21-111 44-130 (135)
86 2j76_E EIF-4B, EIF4B, eukaryot 99.9 7.1E-22 2.4E-26 114.4 5.4 84 20-109 15-99 (100)
87 1wel_A RNA-binding protein 12; 99.9 5.9E-21 2E-25 114.5 9.4 85 19-108 20-104 (124)
88 2jwn_A Embryonic polyadenylate 99.9 1E-20 3.4E-25 113.3 10.3 83 24-111 36-118 (124)
89 2rs2_A Musashi-1, RNA-binding 99.8 3.9E-21 1.3E-25 113.0 8.2 88 19-111 20-107 (109)
90 1wex_A Hypothetical protein (r 99.8 7.2E-21 2.5E-25 111.0 9.3 84 19-112 10-95 (104)
91 1nu4_A U1A RNA binding domain; 99.8 3.7E-21 1.3E-25 110.5 7.9 83 21-110 5-91 (97)
92 1x4b_A Heterogeneous nuclear r 99.8 1.2E-21 4.2E-26 116.1 6.0 85 22-111 25-109 (116)
93 2dgt_A RNA-binding protein 30; 99.8 2.1E-20 7.1E-25 106.6 10.9 82 19-112 5-86 (92)
94 2xnq_A Nuclear polyadenylated 99.8 1.2E-20 4.2E-25 108.7 9.9 80 18-109 16-96 (97)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.7E-21 2.6E-25 115.7 9.4 81 21-105 60-140 (140)
96 1x4d_A Matrin 3; structural ge 99.8 3.9E-21 1.3E-25 111.7 7.6 81 20-110 11-94 (102)
97 2cpi_A CCR4-NOT transcription 99.8 3.4E-21 1.2E-25 113.5 7.4 85 22-110 13-103 (111)
98 2mss_A Protein (musashi1); RNA 99.8 3.1E-21 1.1E-25 106.1 6.8 75 26-105 1-75 (75)
99 2jvo_A Nucleolar protein 3; nu 99.8 8.5E-21 2.9E-25 111.4 8.7 82 17-110 24-105 (108)
100 2wbr_A GW182, gawky, LD47780P; 99.8 8.8E-21 3E-25 106.7 8.3 74 23-106 6-79 (89)
101 1why_A Hypothetical protein ri 99.8 2.5E-20 8.6E-25 107.2 10.4 83 18-110 11-95 (97)
102 2err_A Ataxin-2-binding protei 99.8 1.2E-20 4E-25 110.9 9.1 84 20-109 25-108 (109)
103 2e5j_A Methenyltetrahydrofolat 99.8 4.6E-20 1.6E-24 106.1 11.2 82 20-110 15-96 (97)
104 2ki2_A SS-DNA binding protein 99.8 1E-21 3.6E-26 111.5 4.2 81 25-110 2-82 (90)
105 1x4g_A Nucleolysin TIAR; struc 99.8 1.5E-20 5.3E-25 110.2 9.2 82 21-112 22-103 (109)
106 2nlw_A Eukaryotic translation 99.8 1.3E-20 4.4E-25 110.0 8.7 82 22-109 13-101 (105)
107 2cq1_A PTB-like protein L; RRM 99.8 1.8E-20 6.2E-25 108.8 9.3 82 20-111 11-94 (101)
108 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-20 4.3E-25 108.2 8.4 83 20-111 12-94 (96)
109 2dnp_A RNA-binding protein 14; 99.8 3.4E-20 1.2E-24 105.3 9.9 80 20-111 5-84 (90)
110 2cpd_A Apobec-1 stimulating pr 99.8 6.6E-20 2.3E-24 105.8 11.2 81 19-111 10-92 (99)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.6E-21 1.6E-25 105.8 6.1 76 25-105 1-76 (77)
112 2dgu_A Heterogeneous nuclear r 99.8 4.4E-20 1.5E-24 107.3 10.5 79 21-111 8-86 (103)
113 2diu_A KIAA0430 protein; struc 99.8 2.8E-20 9.5E-25 105.7 9.3 76 22-111 6-87 (96)
114 3q2s_C Cleavage and polyadenyl 99.8 1E-20 3.5E-25 124.1 8.5 81 23-107 67-149 (229)
115 1x4c_A Splicing factor, argini 99.8 5.2E-20 1.8E-24 107.9 10.5 82 19-111 10-96 (108)
116 2cq4_A RNA binding motif prote 99.8 8.3E-21 2.8E-25 112.2 6.9 80 24-108 25-104 (114)
117 2kvi_A Nuclear polyadenylated 99.8 1.6E-20 5.5E-25 107.9 7.8 79 20-110 6-85 (96)
118 2cqh_A IGF-II mRNA-binding pro 99.8 3.2E-20 1.1E-24 105.9 9.0 80 21-111 5-86 (93)
119 2db1_A Heterogeneous nuclear r 99.8 3.5E-20 1.2E-24 110.3 9.4 81 21-107 14-97 (118)
120 4f02_A Polyadenylate-binding p 99.8 5.7E-20 2E-24 119.1 11.2 86 20-109 11-96 (213)
121 2hgl_A HNRPF protein, heteroge 99.8 3E-20 1E-24 113.1 9.2 82 21-108 41-125 (136)
122 1wf1_A RNA-binding protein RAL 99.8 4.2E-20 1.4E-24 108.5 9.5 80 20-111 23-103 (110)
123 2la4_A Nuclear and cytoplasmic 99.8 1.4E-20 4.8E-25 108.9 7.3 77 22-108 25-101 (101)
124 3lqv_A PRE-mRNA branch site pr 99.8 5.7E-20 1.9E-24 108.7 10.0 83 20-109 4-86 (115)
125 2cpj_A Non-POU domain-containi 99.8 4.9E-20 1.7E-24 106.3 9.5 81 21-111 12-92 (99)
126 1b7f_A Protein (SXL-lethal pro 99.8 5.8E-20 2E-24 114.3 10.3 86 22-111 1-86 (168)
127 1wg5_A Heterogeneous nuclear r 99.8 5E-20 1.7E-24 107.3 9.3 86 19-110 10-96 (104)
128 1wez_A HnRNP H', FTP-3, hetero 99.8 4.4E-20 1.5E-24 107.3 9.0 84 20-110 11-94 (102)
129 2ytc_A PRE-mRNA-splicing facto 99.8 3.8E-20 1.3E-24 103.9 8.4 77 20-106 8-85 (85)
130 1fxl_A Paraneoplastic encephal 99.8 1.1E-19 3.7E-24 112.8 11.1 84 23-110 1-84 (167)
131 2cq2_A Hypothetical protein LO 99.8 4E-20 1.4E-24 109.2 8.4 85 20-114 21-112 (114)
132 2cpy_A RNA-binding protein 12; 99.8 2E-20 6.9E-25 110.7 7.2 83 20-108 11-94 (114)
133 2hvz_A Splicing factor, argini 99.8 3.3E-20 1.1E-24 107.4 7.8 77 25-110 1-77 (101)
134 1whx_A Hypothetical protein ri 99.8 4.2E-20 1.4E-24 108.9 8.3 78 22-109 8-85 (111)
135 2krb_A Eukaryotic translation 99.8 1.3E-20 4.4E-25 105.1 5.7 73 24-102 1-80 (81)
136 1x4f_A Matrin 3; structural ge 99.8 1.7E-20 5.9E-25 110.6 6.5 81 21-111 22-105 (112)
137 3md3_A Nuclear and cytoplasmic 99.8 2.6E-19 8.8E-24 111.0 11.8 84 20-107 83-166 (166)
138 2e44_A Insulin-like growth fac 99.8 8.5E-20 2.9E-24 104.7 8.9 85 20-111 11-95 (96)
139 2qfj_A FBP-interacting repress 99.8 2.5E-19 8.4E-24 115.5 11.8 86 22-111 123-208 (216)
140 2i2y_A Fusion protein consists 99.8 1.1E-19 3.6E-24 112.1 9.6 81 20-109 69-149 (150)
141 2lcw_A RNA-binding protein FUS 99.7 7.7E-22 2.6E-26 117.0 0.0 87 21-111 4-98 (116)
142 1wg1_A KIAA1579 protein, homol 99.8 7.9E-20 2.7E-24 103.4 7.9 78 22-110 3-80 (88)
143 2f3j_A RNA and export factor b 99.8 8.1E-20 2.8E-24 115.7 8.8 83 22-109 86-168 (177)
144 1iqt_A AUF1, heterogeneous nuc 99.8 2.3E-20 7.8E-25 102.5 5.1 75 26-105 1-75 (75)
145 2yh0_A Splicing factor U2AF 65 99.8 5.3E-19 1.8E-23 112.6 11.5 85 22-110 112-196 (198)
146 2g4b_A Splicing factor U2AF 65 99.8 4.3E-19 1.5E-23 110.8 10.5 83 20-106 90-172 (172)
147 3pgw_S U1-70K; protein-RNA com 99.8 2.9E-19 9.9E-24 126.6 10.8 84 22-109 100-183 (437)
148 2lmi_A GRSF-1, G-rich sequence 99.8 5.3E-20 1.8E-24 107.7 5.7 83 20-108 7-92 (107)
149 2e5g_A U6 snRNA-specific termi 99.8 4.1E-19 1.4E-23 101.6 9.0 80 22-111 6-85 (94)
150 2dnn_A RNA-binding protein 12; 99.8 1.2E-19 4.1E-24 106.6 6.8 79 22-107 14-92 (109)
151 1x5p_A Negative elongation fac 99.8 1.1E-18 3.8E-23 100.3 10.6 80 21-112 12-91 (97)
152 2xs2_A Deleted in azoospermia- 99.8 6.8E-20 2.3E-24 106.2 5.2 81 22-109 7-87 (102)
153 1l3k_A Heterogeneous nuclear r 99.8 8.2E-19 2.8E-23 111.6 10.1 85 20-109 9-93 (196)
154 1sjr_A Polypyrimidine tract-bi 99.8 1.6E-18 5.3E-23 108.1 10.7 78 24-109 46-125 (164)
155 3tyt_A Heterogeneous nuclear r 99.8 7E-19 2.4E-23 113.6 8.7 78 22-108 2-80 (205)
156 2dha_A FLJ20171 protein; RRM d 99.8 7.9E-19 2.7E-23 105.2 8.1 81 21-107 20-104 (123)
157 1l3k_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 110.2 10.1 86 22-112 102-187 (196)
158 2cjk_A Nuclear polyadenylated 99.8 3.8E-19 1.3E-23 110.6 6.8 81 23-108 86-166 (167)
159 4f02_A Polyadenylate-binding p 99.8 2.7E-18 9.2E-23 111.2 10.9 80 23-108 102-181 (213)
160 1b7f_A Protein (SXL-lethal pro 99.8 4.4E-18 1.5E-22 105.7 11.4 81 21-105 86-168 (168)
161 3zzy_A Polypyrimidine tract-bi 99.8 3.7E-18 1.3E-22 102.9 10.0 77 24-109 28-107 (130)
162 3beg_B Splicing factor, argini 99.8 1.3E-18 4.5E-23 103.0 7.7 78 22-110 14-96 (115)
163 3md3_A Nuclear and cytoplasmic 99.8 3.9E-18 1.3E-22 105.6 10.1 81 25-110 1-81 (166)
164 2hgn_A Heterogeneous nuclear r 99.8 1.8E-19 6.1E-24 110.1 3.7 83 21-110 43-125 (139)
165 2j8a_A Histone-lysine N-methyl 99.8 1.9E-18 6.6E-23 103.3 8.1 79 25-107 3-95 (136)
166 1fje_B Nucleolin RBD12, protei 99.8 2.5E-18 8.6E-23 107.7 9.1 80 21-109 96-175 (175)
167 2bz2_A Negative elongation fac 99.8 2.9E-18 1E-22 102.4 8.9 79 21-111 36-114 (121)
168 1fxl_A Paraneoplastic encephal 99.8 7E-18 2.4E-22 104.5 10.7 80 22-105 86-167 (167)
169 2e5i_A Heterogeneous nuclear r 99.8 8.5E-18 2.9E-22 100.7 10.3 79 21-109 20-103 (124)
170 2hgm_A HNRPF protein, heteroge 99.8 8.2E-19 2.8E-23 105.4 5.8 82 20-108 38-121 (126)
171 3d2w_A TAR DNA-binding protein 99.8 3.1E-18 1.1E-22 97.2 7.9 78 20-110 7-86 (89)
172 3nmr_A Cugbp ELAV-like family 99.8 9.6E-18 3.3E-22 104.7 10.6 80 22-106 93-175 (175)
173 2pe8_A Splicing factor 45; RRM 99.8 1.1E-17 3.7E-22 97.7 10.0 83 21-107 5-93 (105)
174 2qfj_A FBP-interacting repress 99.8 4.4E-18 1.5E-22 109.6 8.7 83 23-109 27-109 (216)
175 3pgw_A U1-A; protein-RNA compl 99.8 1.3E-17 4.4E-22 111.7 11.2 83 21-110 6-92 (282)
176 2hzc_A Splicing factor U2AF 65 99.8 3.5E-18 1.2E-22 96.1 7.1 73 21-104 3-86 (87)
177 3nmr_A Cugbp ELAV-like family 99.7 1.8E-17 6.3E-22 103.4 10.5 83 23-109 2-89 (175)
178 1fje_B Nucleolin RBD12, protei 99.7 2.1E-18 7.3E-23 108.1 6.1 86 19-110 8-93 (175)
179 2dnl_A Cytoplasmic polyadenyla 99.7 8.5E-18 2.9E-22 99.3 7.0 76 21-103 5-83 (114)
180 3smz_A Protein raver-1, ribonu 99.7 3.8E-17 1.3E-21 109.4 11.0 84 22-110 182-266 (284)
181 2adc_A Polypyrimidine tract-bi 99.7 1.7E-17 5.9E-22 108.4 8.9 81 19-108 29-110 (229)
182 3pgw_A U1-A; protein-RNA compl 99.7 3.3E-17 1.1E-21 109.7 10.4 79 19-106 202-281 (282)
183 3smz_A Protein raver-1, ribonu 99.7 5.1E-17 1.7E-21 108.8 11.3 85 21-109 92-176 (284)
184 2ghp_A U4/U6 snRNA-associated 99.7 1.4E-17 4.6E-22 112.0 8.4 83 21-108 207-291 (292)
185 3u1l_A PRE-mRNA-splicing facto 99.7 9.4E-18 3.2E-22 110.4 7.1 79 21-109 131-230 (240)
186 1wf0_A TDP-43, TAR DNA-binding 99.7 8E-18 2.7E-22 95.0 5.5 77 22-111 3-81 (88)
187 2voo_A Lupus LA protein; RNA-b 99.7 7.1E-17 2.4E-21 103.4 10.1 81 24-110 109-189 (193)
188 2cjk_A Nuclear polyadenylated 99.7 1.2E-17 4.2E-22 103.7 6.0 80 23-108 2-81 (167)
189 2dit_A HIV TAT specific factor 99.7 2.1E-16 7.1E-21 93.0 10.4 84 20-111 11-105 (112)
190 3tyt_A Heterogeneous nuclear r 99.7 5.8E-17 2E-21 104.6 7.6 78 22-105 121-204 (205)
191 2yh0_A Splicing factor U2AF 65 99.7 3.4E-17 1.2E-21 104.2 6.1 85 22-108 2-88 (198)
192 1qm9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 102.0 8.5 78 22-108 118-197 (198)
193 1qm9_A Polypyrimidine tract-bi 99.7 5.7E-17 2E-21 103.5 6.5 76 24-108 3-79 (198)
194 2g4b_A Splicing factor U2AF 65 99.7 1E-16 3.5E-21 99.9 7.3 86 23-110 3-90 (172)
195 2adc_A Polypyrimidine tract-bi 99.7 2.2E-16 7.4E-21 103.2 9.1 78 22-108 149-228 (229)
196 3sde_A Paraspeckle component 1 99.7 3.2E-16 1.1E-20 104.2 8.8 77 22-108 20-96 (261)
197 3sde_A Paraspeckle component 1 99.7 9.1E-16 3.1E-20 102.0 10.8 84 21-109 93-180 (261)
198 3v4m_A Splicing factor U2AF 65 99.7 3.4E-16 1.2E-20 91.3 7.3 83 21-107 2-96 (105)
199 2ghp_A U4/U6 snRNA-associated 99.7 4.1E-16 1.4E-20 104.8 8.7 84 22-110 115-199 (292)
200 3ue2_A Poly(U)-binding-splicin 99.7 1.5E-15 5.1E-20 90.3 9.6 82 22-107 18-108 (118)
201 1jmt_A Splicing factor U2AF 35 99.6 1.6E-16 5.3E-21 92.6 3.5 72 29-105 20-103 (104)
202 3tht_A Alkylated DNA repair pr 99.6 6.6E-15 2.3E-19 101.4 8.4 77 20-106 14-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.9E-14 1.3E-18 81.8 10.0 67 34-111 27-93 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1.3E-13 4.3E-18 81.4 9.0 78 21-106 4-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 1.5E-12 5.1E-17 73.2 6.5 77 20-109 3-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.9E-11 6.5E-16 72.6 8.2 77 21-107 15-95 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 5E-11 1.7E-15 77.3 8.7 67 36-106 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 9.4E-11 3.2E-15 66.3 6.7 75 19-106 10-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.6 4.6E-07 1.6E-11 52.4 8.1 73 22-104 19-96 (117)
210 1uw4_A UPF3X; nonsense mediate 98.0 7.8E-05 2.7E-09 41.8 8.2 80 25-108 2-88 (91)
211 1wey_A Calcipressin 1; structu 97.9 3.7E-05 1.3E-09 44.1 5.5 75 24-108 5-84 (104)
212 2dhx_A Poly (ADP-ribose) polym 97.5 0.0013 4.4E-08 37.6 8.3 72 23-106 7-82 (104)
213 1whv_A Poly(A)-specific ribonu 97.5 0.00071 2.4E-08 38.3 6.8 54 25-91 17-70 (100)
214 2l08_A Regulator of nonsense t 97.3 0.0009 3.1E-08 37.9 5.8 79 24-106 9-94 (97)
215 2i2y_A Fusion protein consists 97.1 0.00027 9.4E-09 42.7 2.5 41 66-107 9-50 (150)
216 3ctr_A Poly(A)-specific ribonu 96.9 0.00085 2.9E-08 38.1 3.2 54 25-91 7-60 (101)
217 1wwh_A Nucleoporin 35, nucleop 96.6 0.0096 3.3E-07 34.9 6.4 70 24-105 24-94 (119)
218 3p3d_A Nucleoporin 53; structu 96.6 0.0083 2.8E-07 35.7 6.0 81 23-106 6-97 (132)
219 2kn4_A Immunoglobulin G-bindin 96.6 0.0031 1E-07 38.2 4.2 27 68-94 11-37 (158)
220 3pq1_A Poly(A) RNA polymerase; 96.1 0.008 2.7E-07 43.0 4.9 53 25-87 54-106 (464)
221 3d45_A Poly(A)-specific ribonu 88.1 2 6.7E-05 31.1 6.8 55 25-92 441-495 (507)
222 2g0c_A ATP-dependent RNA helic 73.6 2.4 8.3E-05 22.0 2.2 64 35-106 12-75 (76)
223 1xn9_A 30S ribosomal protein S 52.3 29 0.001 19.4 6.0 52 34-86 28-80 (101)
224 2v94_A RPS24, 30S ribosomal pr 47.1 38 0.0013 19.2 5.9 51 34-85 37-88 (107)
225 4eyt_A Telomerase associated p 44.2 40 0.0014 18.6 6.8 58 22-91 10-67 (129)
226 2g1d_A 30S ribosomal protein S 39.6 35 0.0012 19.0 3.1 48 34-85 29-80 (98)
227 2xzm_P RPS24E; ribosome, trans 36.3 71 0.0024 19.2 5.5 48 34-85 31-82 (149)
228 3lpe_A Putative transcription 33.5 27 0.00093 18.9 2.0 27 68-94 48-74 (92)
229 1ywx_A 30S ribosomal protein S 32.3 69 0.0024 17.9 7.2 51 34-85 28-79 (102)
230 3uzu_A Ribosomal RNA small sub 21.8 31 0.0011 22.7 1.0 23 25-47 115-137 (279)
231 3p8b_B Transcription antitermi 21.3 66 0.0022 18.9 2.3 26 69-94 42-67 (152)
232 3u5c_Y RP50, 40S ribosomal pro 21.0 1.4E+02 0.0048 17.6 7.6 51 34-85 33-84 (135)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=129.01 Aligned_cols=82 Identities=24% Similarity=0.473 Sum_probs=76.4
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
-.+++|||+|||+++++++|+++|++ ||.|..++ .+.++.+|.++|||||+|.+.++|.+|+..|||..++|++|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~---i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAK---LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEE---EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeE---eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44688999999999999999999999 99999887 466778899999999999999999999999999999999999
Q ss_pred EEeccC
Q 033648 102 IQFGRN 107 (114)
Q Consensus 102 v~~a~~ 107 (114)
|++|+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999976
No 2
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=137.19 Aligned_cols=108 Identities=40% Similarity=0.787 Sum_probs=96.7
Q ss_pred CCCChhhhhcCCCCCcCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceec--ccceeEEeccCCCceeEEEEEeCC
Q 033648 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAA--KSGLIVKLMQEGRMRGQAFVTFPS 79 (114)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~--~~~~~~~~~~~~~~~g~~fv~f~~ 79 (114)
++++.+++..+|..+++.+..++++|||+|||+.+++++|+.+|++ ||.|..+ ++++.+....+|.++|||||+|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~ 101 (143)
T 3egn_A 23 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 101 (143)
T ss_dssp HBCCHHHHHHCGGGTTCCCCSCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSS
T ss_pred ccCCHHHHhhcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEeccCCCcccEEEEEeCC
Confidence 3678899999999889999999999999999999999999999999 9999876 334455556789999999999999
Q ss_pred HHHHHHHHHHhCCcccCCceEEEEeccCCCC
Q 033648 80 VELAHRALNLVNGYVFKGKPMIIQFGRNPAA 110 (114)
Q Consensus 80 ~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 110 (114)
.++|.+|+..|||..++|+.|.|++|++...
T Consensus 102 ~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 102 EKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp HHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 9999999999999999999999999987543
No 3
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.92 E-value=6.2e-25 Score=130.09 Aligned_cols=107 Identities=43% Similarity=0.740 Sum_probs=95.1
Q ss_pred CCCChhhhhcCCCCCcCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHH
Q 033648 2 GKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVE 81 (114)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~ 81 (114)
++++.++....+......+..++++|||+|||+.+++++|+.+|.+ ||.|..+.+.. +..++.++|||||+|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~ 78 (115)
T 2cpx_A 3 SGSSGEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQF---RMMTGRMRGQAFITFPNKE 78 (115)
T ss_dssp SCCCCSSSCCCSCCCCCCCCSCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEE---EEECSSSCSEEEEECSSHH
T ss_pred CCCChhhhhhcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEE---EcCCCccceEEEEEECCHH
Confidence 6789999999998888888899999999999999999999999999 99987664322 2238889999999999999
Q ss_pred HHHHHHHHhCCcccCCceEEEEeccCCCCCC
Q 033648 82 LAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 112 (114)
Q Consensus 82 ~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 112 (114)
+|.+|+..|||..++|+.|.|++|++.....
T Consensus 79 ~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 79 IAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp HHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 9999999999999999999999999877654
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=123.65 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=77.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
+|.++|||+|||+.+++++|+++|++ ||.|..++ .+.+..++.++|||||+|.+.++|++|+..|||..++|+.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~---i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVE---ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEE---EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 56789999999999999999999999 99999887 466788899999999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
|++|...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9999754
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=116.82 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=74.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||.++++++|+.+|++ ||.|..++ .+.+..++.++|||||+|.+.++|++|+..|||..++|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAP-FGRISDAR---VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEE---EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456789999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEeccCC
Q 033648 101 IIQFGRNP 108 (114)
Q Consensus 101 ~v~~a~~~ 108 (114)
.|++|+++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999875
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=6.9e-23 Score=117.44 Aligned_cols=88 Identities=31% Similarity=0.500 Sum_probs=79.7
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++++|||+|||+++++++|+++|++ ||.|..+. .+.+..++.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIV---LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEE---EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 457789999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 033648 101 IIQFGRNPAAAK 112 (114)
Q Consensus 101 ~v~~a~~~~~~~ 112 (114)
+|++++++....
T Consensus 78 ~V~~a~~~~~~~ 89 (95)
T 2dnz_A 78 RVGHVTERLDGG 89 (95)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEEcccccCCC
Confidence 999999876553
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=1.3e-22 Score=120.21 Aligned_cols=89 Identities=24% Similarity=0.368 Sum_probs=80.5
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++.++|||+|||+++++++|+++|.+ ||.|..++ .+.+..++.+++||||+|.+.++|++|+..|||..++|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAK---VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEE---EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 456789999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCC
Q 033648 101 IIQFGRNPAAAKP 113 (114)
Q Consensus 101 ~v~~a~~~~~~~~ 113 (114)
.|++++++...++
T Consensus 98 ~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 98 KVQLKRSKNDSKS 110 (115)
T ss_dssp EEECCCCSCCCCC
T ss_pred EEEEcCCCCcCCC
Confidence 9999998776543
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=120.35 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=74.6
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC-CcccCCceEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN-GYVFKGKPMI 101 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-g~~~~g~~l~ 101 (114)
+++|||+|||+++++++|+++|++ || .|.++++ ++++.+|.++|||||+|.+.++|.+|++.++ +..++|++|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i---~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRL---MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCS---SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEE---EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 468999999999999999999999 99 7888874 4577889999999999999999999999875 5679999999
Q ss_pred EEeccCCCCC
Q 033648 102 IQFGRNPAAA 111 (114)
Q Consensus 102 v~~a~~~~~~ 111 (114)
|++|+++...
T Consensus 77 V~~a~~~~~~ 86 (91)
T 2lxi_A 77 MHYSDPKPKI 86 (91)
T ss_dssp EECCCSCCCC
T ss_pred EEEcCCCCCC
Confidence 9999987643
No 9
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=117.22 Aligned_cols=85 Identities=20% Similarity=0.422 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCcee--------cccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDA--------AKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--------~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
..+.++.++|||+|||+++++++|+.+|++ ||.+.. ++ .+.++.+|.++|||||+|.+.++|.+|+..
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~---i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMIN---LYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEE---EEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEE---EEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 345677899999999999999999999999 999987 65 456677899999999999999999999999
Q ss_pred hCCcccCCceEEEEecc
Q 033648 90 VNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 90 l~g~~~~g~~l~v~~a~ 106 (114)
|||..+.|+.|.|++|+
T Consensus 83 l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HTTCBSSSSBCEEEECC
T ss_pred hCCCEeCCcEEEEEecC
Confidence 99999999999999985
No 10
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=8.8e-23 Score=119.18 Aligned_cols=86 Identities=16% Similarity=0.343 Sum_probs=78.6
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...++++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIH---LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEE---EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3456789999999999999999999999 99998886 4567778999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|++|+++.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998765
No 11
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=116.30 Aligned_cols=89 Identities=16% Similarity=0.317 Sum_probs=79.3
Q ss_pred cCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 17 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
......+.++|||+|||+.+++++|+.+|.+ ||.|..+. .+.+. +|..+|||||+|.+.++|.+|+..|||..++
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLR---LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEE---EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3445577889999999999999999999999 99998876 33444 8899999999999999999999999999999
Q ss_pred CceEEEEeccCCCC
Q 033648 97 GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 g~~l~v~~a~~~~~ 110 (114)
|+.|.|+++++...
T Consensus 85 g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 85 ENIIKVAISNSGPS 98 (100)
T ss_dssp SCEEEEEECCCCSC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999998764
No 12
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.90 E-value=6.3e-23 Score=115.33 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=75.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++.++|||+|||+++++++|+.+|++ ||.|..+. .+.+..++..+|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQ---IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEE---CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEE---EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999 99998886 34567789999999999999999999999999999999999
Q ss_pred EEEecc
Q 033648 101 IIQFGR 106 (114)
Q Consensus 101 ~v~~a~ 106 (114)
.|++|+
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=8.1e-23 Score=118.83 Aligned_cols=89 Identities=25% Similarity=0.427 Sum_probs=81.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+++++++|+.+|++ ||.|..+. .+.+..++.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIY---LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEE---EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEE---EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 466789999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCC
Q 033648 101 IIQFGRNPAAAKP 113 (114)
Q Consensus 101 ~v~~a~~~~~~~~ 113 (114)
.|++++++....+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9999998876654
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=2.9e-22 Score=122.18 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=80.3
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||.++++++|+.+|++ ||.|..++ .+.+..++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVK---IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEE---EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 33456789999999999999999999999 99998886 456777899999999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|++|++....
T Consensus 113 ~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 RLKVALAASGHQR 125 (139)
T ss_dssp EEEEEESSCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999977644
No 15
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=119.13 Aligned_cols=86 Identities=27% Similarity=0.492 Sum_probs=78.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++.++|||+|||+.+++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQ---LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEE---EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 466789999999999999999999999 99998886 45677789999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|++++++.+
T Consensus 99 ~V~~a~~k~d 108 (108)
T 2jrs_A 99 KVGHVTERTD 108 (108)
T ss_dssp EEECSCSSCC
T ss_pred EEEEcccCCC
Confidence 9999998753
No 16
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1.4e-22 Score=113.44 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=75.5
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
+.+|||+|||+++++++|+.+|++ ||.|..+. .+.+..++.++|||||+|.+.++|++|+..|||..++|++|.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~---i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGH---VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTT-STTEEEEE---EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEE---EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 358999999999999999999999 99998886 45567789999999999999999999999999999999999999
Q ss_pred eccCCC
Q 033648 104 FGRNPA 109 (114)
Q Consensus 104 ~a~~~~ 109 (114)
+|+++.
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 998764
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=117.45 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=79.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+.+|++ ||.|..+.+ +.+..++..+|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHY---PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEEC---CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEE---EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 466789999999999999999999999 999988763 4455688999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|++++++...
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999988764
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=119.27 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=72.9
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCc--eecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc----c
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSI--DAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV----F 95 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i--~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~----~ 95 (114)
..-.+|||+|||+.+|+++|+++|++ ||.+ ..++ .++++.+|.++|||||+|.+.++|.+|++.|||.. +
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~---i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIR---LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEE---CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEE---EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 45578999999999999999999999 9964 4554 35677889999999999999999999999999974 8
Q ss_pred CCceEEEEeccC
Q 033648 96 KGKPMIIQFGRN 107 (114)
Q Consensus 96 ~g~~l~v~~a~~ 107 (114)
+||+|.|+||++
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999986
No 19
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=2.2e-23 Score=118.66 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=70.0
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcC--CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFG--SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G--~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
.+|||+|||+++++++|+++|++ || .+.+++ .+.++.+|.++|||||+|.+.++|++|+..|||..++|+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~---i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIK---FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEE---EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEE---EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 47999999999999999999999 99 888776 4567789999999999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 033648 103 QFGRNPAAAK 112 (114)
Q Consensus 103 ~~a~~~~~~~ 112 (114)
.++++.....
T Consensus 78 ~~~~~~~~~~ 87 (90)
T 3p5t_L 78 TPSNKLEHHH 87 (90)
T ss_dssp CCC-------
T ss_pred EECCCCcccc
Confidence 9999876543
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.6e-22 Score=116.55 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=77.2
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEecc---CCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ---EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
.+.++|||+|||+++++++|+++|++ ||.|..+.+ +.+.. ++..+|||||+|.+.++|.+|+..|||..++|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTI---SKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEE---EEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---EecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 56789999999999999999999999 999988863 34444 558899999999999999999999999999999
Q ss_pred eEEEEeccCCCCCC
Q 033648 99 PMIIQFGRNPAAAK 112 (114)
Q Consensus 99 ~l~v~~a~~~~~~~ 112 (114)
.|.|+++++.....
T Consensus 79 ~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 79 KLEVRISERATKPA 92 (98)
T ss_dssp ECEEECSSCSSCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999999776543
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=116.72 Aligned_cols=89 Identities=16% Similarity=0.299 Sum_probs=79.3
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+++++++|+.+|++ ||.|..+. .+.+..++..+|||||+|.+.++|.+|+. |||..++|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVV---MIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEE---ECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 34567789999999999999999999999 99998886 34566788999999999999999999998 999999999
Q ss_pred eEEEEeccCCCCCC
Q 033648 99 PMIIQFGRNPAAAK 112 (114)
Q Consensus 99 ~l~v~~a~~~~~~~ 112 (114)
.|.|+++++.....
T Consensus 80 ~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 80 KVEVKRAEPRDSKS 93 (99)
T ss_dssp BCEEEECCCCCCCC
T ss_pred EEEEEECCCCcccC
Confidence 99999999876553
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=4.3e-22 Score=116.05 Aligned_cols=88 Identities=25% Similarity=0.469 Sum_probs=78.6
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC---
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--- 97 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g--- 97 (114)
..+.++|||+|||+.+++++|+.+|++ ||.|..+. .+.+ .++.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~---i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECT---VLRG-PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---EEEC-SSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEEC-CCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 466899999999999999999999999 99998886 2334 478999999999999999999999999999988
Q ss_pred ceEEEEeccCCCCCCC
Q 033648 98 KPMIIQFGRNPAAAKP 113 (114)
Q Consensus 98 ~~l~v~~a~~~~~~~~ 113 (114)
+.|.|.+|+++....+
T Consensus 87 ~~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 87 SSLVVKFADTDKESGP 102 (105)
T ss_dssp SCCEEEESCSSCCCSC
T ss_pred ccEEEEECccCcccCC
Confidence 9999999998876654
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=117.23 Aligned_cols=90 Identities=23% Similarity=0.384 Sum_probs=80.3
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+++++++|+.+|++ ||.|..++ .+.+..++..++||||+|.+.++|.+|+..|||..++|+
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVV---VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEE---ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEE---EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34567889999999999999999999999 99998876 344566888999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCC
Q 033648 99 PMIIQFGRNPAAAK 112 (114)
Q Consensus 99 ~l~v~~a~~~~~~~ 112 (114)
.|.|+++++....+
T Consensus 83 ~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 83 QIRVDQAGKSSDNR 96 (102)
T ss_dssp CCEEEEEECCCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999999876553
No 24
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=9.3e-23 Score=117.25 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=76.9
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
|+++|||+|||.++++++|+.+|++ ||.|..+++ +.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKM---MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEC---CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEE---EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 5789999999999999999999999 999988863 446668899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 033648 103 QFGRNPAA 110 (114)
Q Consensus 103 ~~a~~~~~ 110 (114)
++|++...
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99998754
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.2e-22 Score=115.28 Aligned_cols=85 Identities=28% Similarity=0.345 Sum_probs=77.5
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..++..+|||||+|.+.++|.+|+..|||..++|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVS---IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEE---EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEE---EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34566789999999999999999999999 99998886 456677889999999999999999999999999999999
Q ss_pred eEEEEeccC
Q 033648 99 PMIIQFGRN 107 (114)
Q Consensus 99 ~l~v~~a~~ 107 (114)
+|.|++|++
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999975
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=4.9e-22 Score=117.61 Aligned_cols=87 Identities=23% Similarity=0.417 Sum_probs=79.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+.+|.+ ||.|..++ .+.+..++..+|||||+|.+.++|++|+..|||..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDAR---VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 466789999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|.++++....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999976543
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.8e-22 Score=117.68 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=79.9
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|++ ||.|..+++ +.+..++..+|||||+|.+.++|.+|+..|||..++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHM---PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEEC---CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34567789999999999999999999999 999988863 44566899999999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|++|+++...
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999987654
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=116.76 Aligned_cols=86 Identities=23% Similarity=0.451 Sum_probs=78.2
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceec-ccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAA-KSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++++|||+|||+.+++++|+.+|++ ||.|..+ + .+.+..++..+|||||+|.+.++|++|+..|||..++|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPK---IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCE---ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEE---EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 56789999999999999999999999 9999877 6 34466789999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|++|++....
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 99999977654
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=118.17 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=79.0
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|++ ||.|..+.+ +.+..++.++|||||+|.+.++|++|+..|||..++|+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYI---PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEC---CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE---EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3466789999999999999999999999 999988763 446667899999999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|++|++....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dnm_A 85 LRVQVARYGRRD 96 (103)
T ss_dssp CEEEECSSCCSC
T ss_pred EEEEECCcCCCC
Confidence 999999976544
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=117.63 Aligned_cols=89 Identities=24% Similarity=0.314 Sum_probs=80.0
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+.+++++|+.+|++ ||.|..+++ +.+..++..+|||||+|.+.++|++|+..|||..++|+.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQI---PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEEC---CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEE---EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3467889999999999999999999999 999988863 446678899999999999999999999999999999999
Q ss_pred EEEEeccCCCCCC
Q 033648 100 MIIQFGRNPAAAK 112 (114)
Q Consensus 100 l~v~~a~~~~~~~ 112 (114)
|.|+++++.....
T Consensus 84 l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 84 IRVNLAKPMRIKE 96 (102)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876553
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.3e-22 Score=115.37 Aligned_cols=87 Identities=29% Similarity=0.462 Sum_probs=77.9
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|++ ||.|..+++ +.+ ++..++||||+|.+.++|.+|+..|||..+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKV---MME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEE---EEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE---EcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 33467889999999999999999999999 999988762 333 888999999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|++++++...
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 84 PLYVALAQRKEER 96 (103)
T ss_dssp BCEEEECSSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999987654
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.6e-22 Score=116.69 Aligned_cols=90 Identities=18% Similarity=0.364 Sum_probs=79.9
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEe-ccCCCceeEEEEEeCCHHHHHHHHHHh-CCcccC
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKL-MQEGRMRGQAFVTFPSVELAHRALNLV-NGYVFK 96 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~ 96 (114)
....+.++|||+|||+.+++++|+.+|++ ||.|..+++ +.+ ..++..+|||||+|.+.++|.+|+..| ||..+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFST-FGELKTVRL---PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEC---CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEE---ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 34567889999999999999999999999 999988763 334 568889999999999999999999999 999999
Q ss_pred CceEEEEeccCCCCCC
Q 033648 97 GKPMIIQFGRNPAAAK 112 (114)
Q Consensus 97 g~~l~v~~a~~~~~~~ 112 (114)
|+.|.|++|+++....
T Consensus 86 g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 86 GRRLVLEWADSEVTVQ 101 (107)
T ss_dssp SCBCEEEECCCCCCCC
T ss_pred CCEEEEEeCCCCCCCC
Confidence 9999999999876553
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=3.6e-22 Score=118.42 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=72.7
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
..++|||+|||+++++++|+++|++ ||.|.++++ +.+ .+.++|||||+|.+.++|++|+..|||..++|+.|.|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i---~~d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V 77 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKV---VCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEE---EEE--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEE---eec--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3568999999999999999999999 999998873 333 3457899999999999999999999999999999999
Q ss_pred EeccCCCC
Q 033648 103 QFGRNPAA 110 (114)
Q Consensus 103 ~~a~~~~~ 110 (114)
.+++++..
T Consensus 78 ~~a~~~~~ 85 (115)
T 4f25_A 78 GRFKSRKE 85 (115)
T ss_dssp EESSCCCC
T ss_pred EECCCccc
Confidence 99987654
No 34
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=115.00 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=79.2
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCce-ecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSID-AAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
...+.++|||+|||+++++++|+.+|++ ||.|. .++ .+.++.++.++|||||+|.+.++|++|+..|||..+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVK---IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEE---EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEE---EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 3567899999999999999999999999 99998 886 456777899999999999999999999999999999999
Q ss_pred e----EEEEeccCCCC
Q 033648 99 P----MIIQFGRNPAA 110 (114)
Q Consensus 99 ~----l~v~~a~~~~~ 110 (114)
. |.|++|++...
T Consensus 81 ~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 81 TPAKRFKLNYATYSGP 96 (99)
T ss_dssp SSCEECCEEETTCCSS
T ss_pred CcceeEEEeecCCCCC
Confidence 9 99999997754
No 35
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=6.7e-22 Score=113.93 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=78.0
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
..++.++|||+|||+++++++|+.+|.+ ||.|..+. .+.+..+|..+|||||+|.+.++|++|+..|||..++|+.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~---~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSV---CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTC---EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceE---EEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3456688999999999999999999999 99998775 4667788999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|++++...
T Consensus 87 l~V~~a~~~~ 96 (98)
T 2cqp_A 87 VKLVLGSGPS 96 (98)
T ss_dssp CEEEESSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998654
No 36
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=115.02 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=75.8
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
...++.++|||+|||+++++++|+++|++ ||.|..++ .+.+..++.+++||||+|.+.++|.+|+..|||..++|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVT---IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEE---ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEE---EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 33467789999999999999999999999 99998876 344666788999999999999999999999999999999
Q ss_pred eEEEEecc
Q 033648 99 PMIIQFGR 106 (114)
Q Consensus 99 ~l~v~~a~ 106 (114)
.|.|++|+
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999986
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4e-22 Score=117.22 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=79.6
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC------Ccc
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN------GYV 94 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------g~~ 94 (114)
..+.++|||+|||+++++++|+.+|.+ ||.|..+++ +.+..++..+|||||+|.+.++|.+|+..|| |..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRV---VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEC---CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEE---EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 466789999999999999999999999 999988863 4566788999999999999999999999999 999
Q ss_pred cCCceEEEEeccCCCCCC
Q 033648 95 FKGKPMIIQFGRNPAAAK 112 (114)
Q Consensus 95 ~~g~~l~v~~a~~~~~~~ 112 (114)
++|+.|.|++++++....
T Consensus 88 ~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSSCEEEEECCCCCCCCC
T ss_pred EcCEEEEEEECCCCccCC
Confidence 999999999999876553
No 38
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=2.4e-22 Score=118.06 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=78.6
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...++++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIH---LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3466789999999999999999999999 99998876 3446678899999999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 033648 100 MIIQFGRNPAA 110 (114)
Q Consensus 100 l~v~~a~~~~~ 110 (114)
|.|++++++..
T Consensus 98 l~V~~a~~~~~ 108 (110)
T 1oo0_B 98 IQVDWCFVKGP 108 (110)
T ss_dssp CEEEESEESSC
T ss_pred EEEEEcccCCC
Confidence 99999997764
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=7.8e-22 Score=114.69 Aligned_cols=87 Identities=18% Similarity=0.377 Sum_probs=78.1
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
.+..+.++|||+|||+++++++|+.+|++ || |..++ .+.+..++.++|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVR---LVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEE---EEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEE---EeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 44567889999999999999999999999 97 88776 4567778999999999999999999999 9999999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|+++++....
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2dng_A 84 SLRVDIAEGRKQD 96 (103)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 9999999977654
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=4.5e-22 Score=116.17 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=78.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc---C
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF---K 96 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~---~ 96 (114)
...+.++|||+|||+.+++++|+.+|++ ||.|..++ .+.+..++.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELT---VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEE---CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEE---EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3466789999999999999999999999 99998886 344667899999999999999999999999999997 8
Q ss_pred CceEEEEeccCCCCC
Q 033648 97 GKPMIIQFGRNPAAA 111 (114)
Q Consensus 97 g~~l~v~~a~~~~~~ 111 (114)
|+.|.|.+++++...
T Consensus 85 g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 NRPIQVKPADSESRG 99 (106)
T ss_dssp SSCCEEEECCCCSCC
T ss_pred CceEEEEECCccccc
Confidence 999999999987654
No 41
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=2.8e-22 Score=120.36 Aligned_cols=90 Identities=16% Similarity=0.300 Sum_probs=79.7
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
.....+.++|||+|||+.+++++|+.+|++ ||.|..+.+ +.+..++.++|||||+|.+.++|++|+..|||..++|
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHL---NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEC---CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 344566789999999999999999999999 999988763 4466688999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
+.|.|++|++....
T Consensus 92 ~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 QPISVDWCFVRGPP 105 (126)
T ss_dssp SBCEEEESEESSSC
T ss_pred eEEEEEEecCCCCC
Confidence 99999999876544
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=1.1e-21 Score=111.73 Aligned_cols=87 Identities=24% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
+..+.++|||+|||+++++++|+.+|++ ||.|..+++ +. .++..++||||+|.+.++|++|+..|||..++|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i---~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADI---KM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEE---EE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE---Ec--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3467889999999999999999999999 999988763 22 47889999999999999999999999999999999
Q ss_pred EEEEeccCCCCCC
Q 033648 100 MIIQFGRNPAAAK 112 (114)
Q Consensus 100 l~v~~a~~~~~~~ 112 (114)
|.|+++++.....
T Consensus 78 l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 78 IDVRIDRNASGPS 90 (92)
T ss_dssp CCCEECSCCSSCC
T ss_pred EEEEEcCCCCCCC
Confidence 9999999877543
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.6e-22 Score=116.70 Aligned_cols=87 Identities=22% Similarity=0.382 Sum_probs=78.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCce--------ecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSID--------AAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~--------~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
..+.++|||+|||+.+++++|+.+|.+ ||.|. .++ .+.+..++..+|||||+|.+.++|.+|+..|||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIH---IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEE---CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEE---EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 466789999999999999999999999 99997 465 344667899999999999999999999999999
Q ss_pred cccCCceEEEEeccCCCCC
Q 033648 93 YVFKGKPMIIQFGRNPAAA 111 (114)
Q Consensus 93 ~~~~g~~l~v~~a~~~~~~ 111 (114)
..+.|+.|.|+++++....
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999987654
No 44
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=4e-22 Score=120.49 Aligned_cols=88 Identities=28% Similarity=0.377 Sum_probs=79.6
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+++++++|+++|++ ||.|..++ .+.+..++..+|||||+|.+.++|++|+..|||..++|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~---i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVS---IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEE---EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34567789999999999999999999999 99998886 455667889999999999999999999999999999999
Q ss_pred eEEEEeccCCCC
Q 033648 99 PMIIQFGRNPAA 110 (114)
Q Consensus 99 ~l~v~~a~~~~~ 110 (114)
.|.|++++++..
T Consensus 117 ~l~V~~a~~~~p 128 (129)
T 2kxn_B 117 RIRVDFSITKRP 128 (129)
T ss_dssp CCEESCCSSSSC
T ss_pred EEEEEEecCCCC
Confidence 999999988653
No 45
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=5.9e-22 Score=113.53 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=73.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++.++|||+|||+++++++|+.+|.+ ||.|..+. .+.+..++..+|||||+|.+.++|++|+..|||..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~---~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSV---CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCC---EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceE---EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 345689999999999999999999999 99998776 46677889999999999999999999999999999999999
Q ss_pred EEEeccC
Q 033648 101 IIQFGRN 107 (114)
Q Consensus 101 ~v~~a~~ 107 (114)
.|+++++
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9999864
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=1.2e-21 Score=114.47 Aligned_cols=84 Identities=29% Similarity=0.358 Sum_probs=75.4
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|.+ ||.|..++ .+.+. +|..+|||||+|.+.++|.+|+..|||..++|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAA---VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEE---EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 33466789999999999999999999999 99998876 34444 899999999999999999999999999999999
Q ss_pred eEEEEeccC
Q 033648 99 PMIIQFGRN 107 (114)
Q Consensus 99 ~l~v~~a~~ 107 (114)
.|.|++|++
T Consensus 99 ~l~V~~a~s 107 (107)
T 3ulh_A 99 PMNIQLVTS 107 (107)
T ss_dssp ECEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999863
No 47
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=118.27 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=74.5
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHH----HHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFF----FVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
...+|+++|||+|||+.+++++|+ .+|++ ||.|..+. ...++.++|||||+|.+.++|..|+..|||..
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~------i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIV------VDLSDDNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEE------ECCCCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEE------eccCCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 345678999999999999998865 68999 99997653 23478899999999999999999999999999
Q ss_pred cCCceEEEEeccCCCC
Q 033648 95 FKGKPMIIQFGRNPAA 110 (114)
Q Consensus 95 ~~g~~l~v~~a~~~~~ 110 (114)
+.|++|.|.+|++++.
T Consensus 97 l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 97 FQGNPLVITFSETPQS 112 (127)
T ss_dssp CTTSCCEEEECCCCCH
T ss_pred eCCCEEEEEEccCcch
Confidence 9999999999997653
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=111.46 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCC-ceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGR-MRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
...++|||+|||.++++++|+.+|++ ||.|..+.+ +.+..++. .+|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i---~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDM---PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEEC---CEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEE---EeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 34678999999999999999999999 999988763 34554444 88999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|+++.+...
T Consensus 78 ~v~~a~~~~~ 87 (88)
T 4a8x_A 78 TATAVLAPWP 87 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 49
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=116.44 Aligned_cols=85 Identities=26% Similarity=0.417 Sum_probs=76.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||.++++++|+.+|++ ||.|..+. .+.+. +|..+|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVL---LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEE---EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 356789999999999999999999999 99998875 23344 88999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|++|++...
T Consensus 79 ~V~~a~~~~~ 88 (116)
T 2fy1_A 79 KVEQAKKPSF 88 (116)
T ss_dssp EEEECCCSSC
T ss_pred EEEECCCCCC
Confidence 9999996653
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.4e-22 Score=117.53 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCCCeEEecCCCC------CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 22 NPASVLYIKNLAK------DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 22 ~~~~~l~v~nlp~------~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
..+++|||+|||. .+++++|+++|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~---i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNME---FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEE---CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEE---EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 3467899999999 9999999999999 99999887 456778899999999999999999999999999999
Q ss_pred CC-ceEEEEeccCC
Q 033648 96 KG-KPMIIQFGRNP 108 (114)
Q Consensus 96 ~g-~~l~v~~a~~~ 108 (114)
.| +.|.|.+|.+.
T Consensus 80 ~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 80 DLKHRLFLYTMKDV 93 (100)
T ss_dssp SSSCBCEEEESHHH
T ss_pred CCCeEEEEEECchh
Confidence 99 99999999753
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.4e-22 Score=114.53 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=77.1
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccC-CCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE-GRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
.+..+.++|||+|||+.+++++|+.+|.+ || |..+.+ +.+..+ +.++|||||+|.+.++|++|+ .|||..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i---~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRL---PREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEEC---CBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEE---ecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34467789999999999999999999999 99 888763 345555 889999999999999999999 999999999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
+.|.|++++++...
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999987654
No 52
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=113.95 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=72.0
Q ss_pred cCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc--
Q 033648 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-- 94 (114)
Q Consensus 17 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-- 94 (114)
.....+|+.+|||+|||+.+++++|+.+|++ ||.|..+.+ + +.+|+|||+|.+.++|.+|+..|+|..
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i---~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVV---M------PKKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEE---E------TTTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEE---E------cCCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 4455688999999999999999999999999 999987752 1 257899999999999999999999976
Q ss_pred cCCceEEEEeccCCC
Q 033648 95 FKGKPMIIQFGRNPA 109 (114)
Q Consensus 95 ~~g~~l~v~~a~~~~ 109 (114)
+.|++|.|+||+++.
T Consensus 84 i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 84 IAGHPAFVNYSTSQK 98 (100)
T ss_dssp ETTEEEEEEECSCSC
T ss_pred eCCcEEEEEeccccc
Confidence 789999999999865
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=112.64 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=73.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHH----HHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFF----FVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
..+.++|||+|||+++++++|+ .+|++ ||.|..+++ +.+..+ ++||||+|.+.++|.+|+..|||..++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i---~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVEL---SPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEE---CSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEE---EeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567899999999999999999 99999 999988763 223333 789999999999999999999999999
Q ss_pred CceEEEEeccCCCCC
Q 033648 97 GKPMIIQFGRNPAAA 111 (114)
Q Consensus 97 g~~l~v~~a~~~~~~ 111 (114)
|+.|.|++|++....
T Consensus 79 gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 79 SKKILVSLATGASGP 93 (96)
T ss_dssp TEEEEEEECCCSSCC
T ss_pred CeEEEEEEcCCCCCC
Confidence 999999999877643
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-21 Score=112.20 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+.+++++|+.+|++ ||.|..+++ +.+ .+..++||||+|.+.++|.+|+..|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKM---ITE--HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEE---ECC--CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEE---Eec--CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3467789999999999999999999999 999988763 223 2336899999999999999999999999999999
Q ss_pred EEEEeccCCCCCC
Q 033648 100 MIIQFGRNPAAAK 112 (114)
Q Consensus 100 l~v~~a~~~~~~~ 112 (114)
|.|+++++....+
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 85 VKVNWATTPSSQK 97 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEECCCCcccc
Confidence 9999999876554
No 55
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=121.81 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=74.7
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcC--CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFG--SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G--~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++|||+|||+++++++|+.+|++ || .|..++ .+.+..+|.++|||||+|.+.++|++|+..|||..++|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~---i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELK---FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEE---EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEE---EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 4579999999999999999999999 99 888876 46677899999999999999999999999999999999999
Q ss_pred EEEeccCC
Q 033648 101 IIQFGRNP 108 (114)
Q Consensus 101 ~v~~a~~~ 108 (114)
.|.+|.+.
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99999753
No 56
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.3e-21 Score=112.58 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
....++.++|||+|||+.+++++|+++|.+ ||.|..++ .+.+ .++..++||||+|.+.++|++|+..|||..++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~---i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRAD---ILED-KDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---EEEC-TTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 345577899999999999999999999999 99998875 2333 468899999999999999999999999999999
Q ss_pred ceEEEEeccCC
Q 033648 98 KPMIIQFGRNP 108 (114)
Q Consensus 98 ~~l~v~~a~~~ 108 (114)
+.|.|++++..
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 99999999854
No 57
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=113.17 Aligned_cols=84 Identities=17% Similarity=0.354 Sum_probs=76.8
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+.+++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFR---LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEE---EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEE---EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34578999999999999999999999 99998886 455667899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|++|++..
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99999765
No 58
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=4.7e-21 Score=109.05 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=75.5
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+++++++|+++|++ | .|..++ .+.+ .+|.++|||||+|.+.++|.+|+. |||..++|+
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~---i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIR---IVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEE---EEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhh-C-CceEEE---EEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 34566789999999999999999999999 9 787775 3444 788999999999999999999999 999999999
Q ss_pred eEEEEeccCCCC
Q 033648 99 PMIIQFGRNPAA 110 (114)
Q Consensus 99 ~l~v~~a~~~~~ 110 (114)
.|.|.+|++...
T Consensus 78 ~i~v~~a~~~~~ 89 (91)
T 2dgw_A 78 YIEVFREKSGPS 89 (91)
T ss_dssp EEEEEEESSCCC
T ss_pred EEEEEECCcCCC
Confidence 999999988754
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=111.78 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=74.2
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+.+++++|+++|++ ||.|..++ .+.+. ++..+|||||+|.+.++|.+|+..|||..++|+.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~---i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVT---ICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEE---EEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEE---EEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3456789999999999999999999999 99998875 23333 5889999999999999999999999999999999
Q ss_pred EEEEeccC
Q 033648 100 MIIQFGRN 107 (114)
Q Consensus 100 l~v~~a~~ 107 (114)
|.|++|+.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999875
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=4.5e-22 Score=118.25 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=74.1
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++.++|||+|||+++++++|+++|++ ||.|..++ .+.+..+|..+|||||+|.+.++|++|+..|||..++|+.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAK---VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEE---ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455689999999999999999999999 99998876 34466788999999999999999999999999999999999
Q ss_pred EEEecc
Q 033648 101 IIQFGR 106 (114)
Q Consensus 101 ~v~~a~ 106 (114)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999985
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.9e-21 Score=111.24 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=76.2
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
.....+.++|||+|||+++++++|+.+|++ ||.|..+++ +.+. +..++||||+|.+.++|.+|+..|||..++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i---~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEI---IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEE---ECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---EecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344567799999999999999999999999 999988763 2222 3378999999999999999999999999999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
+.|.|+++++....
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 83 RKIEVNNATARVMT 96 (103)
T ss_dssp EECEEEECCSSCCC
T ss_pred EEEEEEEcccCCCC
Confidence 99999999977654
No 62
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=2.6e-21 Score=120.10 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=78.6
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+++++++|+.+|++ ||.|..+++ +.+..+|.++|||||+|.+.++|.+|+..|||..++|++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~i---~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYI---PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEC---CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 355789999999999999999999999 999988863 4466789999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|++|++....
T Consensus 143 ~v~~a~~~~~~ 153 (158)
T 2kn4_A 143 RVQMARYGRPP 153 (158)
T ss_dssp EEEEECCSSCC
T ss_pred EEEECCCCCCC
Confidence 99999977544
No 63
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=111.20 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=75.6
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+++|+. |+.+. .+.+..++.+++||||+|.+.++|.+|+..|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~------~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDG-SVRAR------IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTT-CSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcC-CeEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3567789999999999999999999998 86442 4556678999999999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|++|+++...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 999999987654
No 64
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=5.6e-21 Score=118.54 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=78.2
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||..+++++|+.+|++ ||.|..+. .+.+..++..++||||+|.+.++|++|+..|||..+.|+.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKII---MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46789999999999999999999999 99998886 456777899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 033648 102 IQFGRNPAA 110 (114)
Q Consensus 102 v~~a~~~~~ 110 (114)
|++|++...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999987654
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=112.31 Aligned_cols=88 Identities=25% Similarity=0.364 Sum_probs=77.8
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc-cCCc
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-~~g~ 98 (114)
...+.++|||+|||+++++++|+.+|++.||.|..++ .+.+. +|.++|||||+|.+.++|.+|+..|||.. ++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~---i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK---VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE---EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE---EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 3467789999999999999999999986599998886 34455 89999999999999999999999999999 9999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|+++++....
T Consensus 81 ~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 81 PVRLSVAIPKASR 93 (104)
T ss_dssp CCCCCBCCCCCSC
T ss_pred eEEEEEccCCCcC
Confidence 9999999876543
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=2.6e-21 Score=109.52 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=74.4
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.++|||+|||+++++++|+++|++ ||.|..++ .+.+..++.++|||||+|.+.++|++|+ .|||..+.|+.|.|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVT---ILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEE---EEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEE---EEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 478999999999999999999999 99998886 4556678999999999999999999999 999999999999999
Q ss_pred eccCCC
Q 033648 104 FGRNPA 109 (114)
Q Consensus 104 ~a~~~~ 109 (114)
++++..
T Consensus 81 ~a~~~~ 86 (89)
T 3ucg_A 81 PKRTNR 86 (89)
T ss_dssp ETTTTS
T ss_pred EccCCC
Confidence 998754
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=4.2e-21 Score=115.03 Aligned_cols=86 Identities=27% Similarity=0.317 Sum_probs=77.1
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++++|||+|||+.+++++|+.+|++ ||.|..++ .+.+. +|..+|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~---i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAA---VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEE---EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEE---EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 456789999999999999999999999 99998876 33444 88899999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|++|.+....
T Consensus 107 ~V~~a~~~~~~ 117 (124)
T 2kt5_A 107 DIQLVASQIDL 117 (124)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEeCCCCCC
Confidence 99999976544
No 68
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=113.99 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=76.6
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCC-ceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC--CcccC
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGS-IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN--GYVFK 96 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~ 96 (114)
...+.++|||+|||+++++++|+.+|.+ ||. |..+.+. ..+..+|..+|||||+|.+.++|.+|+..|| +..++
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~--~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVY--ASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECC--SSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEE--ccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 3466789999999999999999999999 998 8877531 1456678899999999999999999999996 58999
Q ss_pred CceEEEEeccCCCC
Q 033648 97 GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 g~~l~v~~a~~~~~ 110 (114)
|+.|.|.+|+++..
T Consensus 81 g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 81 GHQIAVDWAEPEID 94 (109)
T ss_dssp TBCCEEEESCSSCS
T ss_pred CCeEEEEEcCCCCC
Confidence 99999999997754
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=110.74 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|.+ ||.|..+++ ..++.+++||||+|.+.++|++|+..|||..++|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDL------KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEE------CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE------EECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3466789999999999999999999999 999987652 335667899999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|+++++....
T Consensus 91 l~V~~a~~~~~~ 102 (109)
T 1x4a_A 91 LRVEFPRSGRGT 102 (109)
T ss_dssp CEEECCCCCCCC
T ss_pred EEEEEcccCCCC
Confidence 999999987654
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=9.5e-22 Score=118.97 Aligned_cols=84 Identities=18% Similarity=0.391 Sum_probs=76.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCcee--cccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc----c
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDA--AKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY----V 94 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~----~ 94 (114)
..+.++|||+|||+++++++|+++|.+ ||.|.. ++ .++++.+|.++|||||+|.+. +|.+|+..|||. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~---i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVR---VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEE---CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEE---EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 466789999999999999999999999 999976 65 355777999999999999999 999999999999 9
Q ss_pred cCCceEEEEeccCCC
Q 033648 95 FKGKPMIIQFGRNPA 109 (114)
Q Consensus 95 ~~g~~l~v~~a~~~~ 109 (114)
++|+.|.|++|++..
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998763
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=113.11 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=79.2
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|.+ ||.|..++ .+.+..++.++|||||+|.+.++|.+|+.. ||..++|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCV---IMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEE---EEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 33567789999999999999999999999 99998886 455677899999999999999999999998 99999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|+++++....
T Consensus 86 ~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 86 NIDPKPCTPRGMQ 98 (105)
T ss_dssp EEBCCCSCCSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999977654
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=3.9e-21 Score=120.35 Aligned_cols=87 Identities=16% Similarity=0.264 Sum_probs=77.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIH---LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEE---EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 455678999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|.+|++....
T Consensus 145 ~V~~a~~~~~~ 155 (165)
T 1rk8_A 145 QVDWCFVKGPK 155 (165)
T ss_dssp EEEESEECC--
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 73
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=114.40 Aligned_cols=82 Identities=27% Similarity=0.437 Sum_probs=71.8
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC--cccCC
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVFKG 97 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~g 97 (114)
..++.++|||+|||+.+++++|+.+|++ ||.|..+.+ +. .+|||||+|.+.++|..|+..|++ ..+.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i---~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLM---LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEE---ET------TTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE---Ec------CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 3567899999999999999999999999 999988753 11 379999999999999999998874 68999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
++|.|++|+++...
T Consensus 82 r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 82 QPIYIQFSNHKELK 95 (105)
T ss_dssp EECCBCCCSSSSCC
T ss_pred EEEEEEEcCCCCCC
Confidence 99999999987654
No 74
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=111.25 Aligned_cols=85 Identities=25% Similarity=0.342 Sum_probs=74.7
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+++++++|+.+|.+ ||.|. .+.+ .++..+|||||+|.+.++|++|+..|||..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEK-ATFIK------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSS-CSEEE------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEEE------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 34567899999999999999999999999 99873 1222 6788999999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|++++++...
T Consensus 82 ~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 82 AIRLELQGPRGSP 94 (101)
T ss_dssp EEEEEECSSCCCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999977654
No 75
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=5.8e-21 Score=107.75 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+. +++..++|+.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 81 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCT---IKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRV 81 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEE---EEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEE---EeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEE
Confidence 3467789999999999999999999999 99999886 45677789999999999999999999995 5888999999
Q ss_pred EEEEec
Q 033648 100 MIIQFG 105 (114)
Q Consensus 100 l~v~~a 105 (114)
|.|++|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999976
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-21 Score=114.30 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=76.1
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+.+++++|+.+|.+ ||.|..++ .+.+..++.+++||||+|.+.++|++|+..+++ .+.|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAV---VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEE---ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEE---EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3466789999999999999999999999 99998886 344667889999999999999999999999998 899999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|++|+...
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999997653
No 77
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-20 Score=111.16 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=75.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc-----
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF----- 95 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~----- 95 (114)
..+.++|||+|||+++++++|+.+|.+ ||.|..++ .+.+. ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~---i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKP-FGQVISTR---ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEE---EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 456789999999999999999999999 99998886 34454 889999999999999999999999999999
Q ss_pred ---CCceEEEEeccCCC
Q 033648 96 ---KGKPMIIQFGRNPA 109 (114)
Q Consensus 96 ---~g~~l~v~~a~~~~ 109 (114)
.+++|.|.||++.+
T Consensus 97 ~~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGPSS 113 (114)
T ss_dssp SCCCSSCBEEEECCCSC
T ss_pred ccCCCCceeEEccCCCC
Confidence 68889999999653
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-20 Score=108.26 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+.+|.+ ||.|..+. .+.+..++.++|||||+|.+.++|.+|+. ++..++|+.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQ---VKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEE---EEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEE---EEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 466789999999999999999999999 99998886 45667789999999999999999999998 5788999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|++++++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999987654
No 79
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=113.58 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=75.5
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+++++++|+.+|++ ||.+.. . .+.+..+|.++|||||+|.+.++|.+|+. |||..+.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~---~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-L---AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-C---CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-E---EEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 456789999999999999999999999 998876 3 34466678899999999999999999998 99999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|.+|+++...
T Consensus 88 ~V~~a~~~~~~ 98 (101)
T 1fj7_A 88 KLEKPKGRDGT 98 (101)
T ss_dssp EEECCSCCCCS
T ss_pred EEEEcCCCCCC
Confidence 99999987643
No 80
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.6e-21 Score=113.47 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=73.0
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC--ccc
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVF 95 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~ 95 (114)
....+|+++|||+|||+++++++|+.+|++ ||.|..+.+ + ..+|||||+|.+.++|.+|+..|++ ..+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i---~------~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLM---L------KGKNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEE---E------GGGTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE---e------CCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 344577899999999999999999999999 999988753 1 1379999999999999999999985 679
Q ss_pred CCceEEEEeccCCCCC
Q 033648 96 KGKPMIIQFGRNPAAA 111 (114)
Q Consensus 96 ~g~~l~v~~a~~~~~~ 111 (114)
.|++|.|++|+++...
T Consensus 95 ~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 95 RGQPIYIQFSNHKELK 110 (119)
T ss_dssp TTBCCEEEECSSSSCC
T ss_pred CCeEEEEEEccCCCCC
Confidence 9999999999987654
No 81
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.85 E-value=3.9e-21 Score=113.32 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=70.4
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
.+..++|||+|||+++++++|+++|++ || .|..+.+ ..+.++|||||+|.+.++|++|+..|||..++|+.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i-------~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSV-------NTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEEC-------SSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEE-------EcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 355689999999999999999999999 99 7876642 12357899999999999999999999999999999
Q ss_pred EEEEeccCCCCCC
Q 033648 100 MIIQFGRNPAAAK 112 (114)
Q Consensus 100 l~v~~a~~~~~~~ 112 (114)
|.|++++.....+
T Consensus 97 i~V~~a~~~p~~r 109 (111)
T 2jvr_A 97 ITVERDDNPPPIR 109 (111)
T ss_dssp EEEEESCC-----
T ss_pred EEEEECCCCCCCC
Confidence 9999998765443
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-22 Score=112.17 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++++|||+|||+++++++|+.+|++ ||.|..++ .+.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTK---AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEE---EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEE---EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 467889999999999999999999999 99998886 45566789999999999999999999999999999999999
Q ss_pred EEEecc
Q 033648 101 IIQFGR 106 (114)
Q Consensus 101 ~v~~a~ 106 (114)
+++++.
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 887654
No 83
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=108.25 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|++ ||.|..+.+ . ++||||+|.+.++|++|+..|||..++|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~----~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDI----I-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEE----E-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEE----E-------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 3467889999999999999999999999 999987752 1 689999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|+++++....
T Consensus 72 l~v~~a~~~~~~ 83 (90)
T 2dnq_A 72 INVEASKNKSKA 83 (90)
T ss_dssp CEEECSSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999977654
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=112.83 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=72.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|++ ||.|..+. .+.+.. |.++|||||+|.+.++|.+|+. ++|..++|+.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~---i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQ---MRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEE---EECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEE---EEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 3456689999999999999999999999 99998886 344444 8899999999999999999998 9999999999
Q ss_pred EEEEeccC
Q 033648 100 MIIQFGRN 107 (114)
Q Consensus 100 l~v~~a~~ 107 (114)
|.|.+++.
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998764
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.6e-21 Score=118.68 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=77.9
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+++|++ ||.|..+++ +.+..++..+|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i---~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYI---PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGG-GSCCSEEEC---CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE---EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 355689999999999999999999999 999988763 4456688999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|+++++....
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999977644
No 86
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-22 Score=114.43 Aligned_cols=84 Identities=17% Similarity=0.293 Sum_probs=72.1
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEec-cCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLM-QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
...+.++|||+|||+++++++|+.+|++ || |..+++ +.+. .+|.++|||||+|.+.++|.+|+ .|||..++|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i---~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRL---PREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEEC---SCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEE---EecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3466789999999999999999999999 99 988763 3344 47889999999999999999999 9999999999
Q ss_pred eEEEEeccCCC
Q 033648 99 PMIIQFGRNPA 109 (114)
Q Consensus 99 ~l~v~~a~~~~ 109 (114)
.|.|++|+++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999998765
No 87
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.9e-21 Score=114.45 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=76.2
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
.+..+.++|||+|||+.+++++|+.+|.+ ||.|..+. .+.+..+|..+|||||+|.+.++|.+|+. +||..++|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~---~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSI---YIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTC---EEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceE---EEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 34456789999999999999999999999 99997754 46677899999999999999999999998 999999999
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
.|.|.+|..+
T Consensus 95 ~i~V~~a~~~ 104 (124)
T 1wel_A 95 FIQVHPITKK 104 (124)
T ss_dssp CBEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998753
No 88
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=1e-20 Score=113.27 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=75.8
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.++|||+|||.++++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|.|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSS-CGSINRIT---ILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEE---EEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 478999999999999999999999 99998886 4556778999999999999999999999 899999999999999
Q ss_pred eccCCCCC
Q 033648 104 FGRNPAAA 111 (114)
Q Consensus 104 ~a~~~~~~ 111 (114)
++++....
T Consensus 111 ~a~~~~~~ 118 (124)
T 2jwn_A 111 PKRTNMPG 118 (124)
T ss_dssp ESSCCCSS
T ss_pred ECCCCCCC
Confidence 99976543
No 89
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=3.9e-21 Score=112.99 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..+ |..++|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~---i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECL---VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---ECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEE---EEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 34566789999999999999999999999 99998886 3446667999999999999999999999876 5899999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|.++.++...
T Consensus 95 ~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 95 TIDPKVAFPRRAQ 107 (109)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999987754
No 90
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=111.03 Aligned_cols=84 Identities=17% Similarity=0.318 Sum_probs=72.0
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc--ccC
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY--VFK 96 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~ 96 (114)
...+|+++|||+|||+.+++++|+.+|++ ||.|..+.+ . ..+|||||+|.+.++|.+|+..|++. .+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i----~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMM----M-----PFKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEE----E-----TTTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEE----E-----CCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 34577899999999999999999999999 999987642 1 13799999999999999999999765 499
Q ss_pred CceEEEEeccCCCCCC
Q 033648 97 GKPMIIQFGRNPAAAK 112 (114)
Q Consensus 97 g~~l~v~~a~~~~~~~ 112 (114)
|++|.|++++.+....
T Consensus 80 Gr~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 80 GQQAFFNYSTSKRITR 95 (104)
T ss_dssp SSBCEEEECSSSSCCC
T ss_pred CEEEEEEEccCccccC
Confidence 9999999999776543
No 91
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=3.7e-21 Score=110.55 Aligned_cols=83 Identities=35% Similarity=0.590 Sum_probs=74.5
Q ss_pred CCCCCeEEecCCCCCCCHhHHH----HHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFF----FVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
.+++++|||+|||+++++++|+ .+|++ ||.|..+.+. .+|..+|||||+|.+.++|..|+..|||..++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVS------RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECC------HHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEE------cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4678999999999999999999 99999 9999876531 36778899999999999999999999999999
Q ss_pred CceEEEEeccCCCC
Q 033648 97 GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 g~~l~v~~a~~~~~ 110 (114)
|+.|.|++++++..
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 99999999998764
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-21 Score=116.06 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+++++++|+.+|.+ ||.|..+. .+.+..++..+|||||+|.+.++|.+|+.. +|..++|+.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCV---VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEE---EECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 34589999999999999999999999 99998886 455667899999999999999999999988 99999999999
Q ss_pred EEeccCCCCC
Q 033648 102 IQFGRNPAAA 111 (114)
Q Consensus 102 v~~a~~~~~~ 111 (114)
|.+++++...
T Consensus 100 V~~a~~~~~~ 109 (116)
T 1x4b_A 100 PKRAVAREES 109 (116)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCccC
Confidence 9999987654
No 93
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=106.58 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+.+++++|+.+|++ ||.|..+.+ .++||||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~-----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDI-----------VKDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEE-----------CSSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE-----------ECCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 34567789999999999999999999999 999987752 144999999999999999999999999999
Q ss_pred eEEEEeccCCCCCC
Q 033648 99 PMIIQFGRNPAAAK 112 (114)
Q Consensus 99 ~l~v~~a~~~~~~~ 112 (114)
.|.|+++++.....
T Consensus 73 ~l~V~~a~~~~~~~ 86 (92)
T 2dgt_A 73 RMHVQLSTSRLRTA 86 (92)
T ss_dssp EEEEEESSCCCSCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999999876543
No 94
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=1.2e-20 Score=108.72 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=70.8
Q ss_pred CCCCCCCCeEEecCCCC-CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 18 YTAGNPASVLYIKNLAK-DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
....+++++|||+|||+ ++++++|+.+|++ ||.|..+.+ .+|||||+|.+.++|.+|+..|||..++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI-----------KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 44567889999999998 9999999999999 999987652 3799999999999999999999999999
Q ss_pred CceEEEEeccCCC
Q 033648 97 GKPMIIQFGRNPA 109 (114)
Q Consensus 97 g~~l~v~~a~~~~ 109 (114)
|+.|.|+++++..
T Consensus 84 g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 84 GKKLILEVSSSNA 96 (97)
T ss_dssp TEECEEEECCCCC
T ss_pred CEEEEEEecCCCC
Confidence 9999999998753
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=115.70 Aligned_cols=81 Identities=26% Similarity=0.353 Sum_probs=73.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+.+|++ ||.|..+++ +.++.++..+|||||+|.+.++|++|+..|||..++|+.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQI---PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEC---CCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEE---eecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 355689999999999999999999999 999988763 4466788999999999999999999999999999999999
Q ss_pred EEEec
Q 033648 101 IIQFG 105 (114)
Q Consensus 101 ~v~~a 105 (114)
.|++|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 96
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=111.71 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=70.4
Q ss_pred CCCCCCeEEecCCCC-CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc--ccC
Q 033648 20 AGNPASVLYIKNLAK-DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY--VFK 96 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~ 96 (114)
...|+++|||+|||+ .+++++|+.+|++ ||.|..+.++ ..++||||+|.+.++|..|+..||+. .+.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLIL---------NKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEEC---------SSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 346789999999999 9999999999999 9999887531 13589999999999999999999975 499
Q ss_pred CceEEEEeccCCCC
Q 033648 97 GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 g~~l~v~~a~~~~~ 110 (114)
|++|.|++|+....
T Consensus 81 Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 81 GKPVRVHLSQKYKR 94 (102)
T ss_dssp TEECEEEEECCCTT
T ss_pred CcEEEEEECCCCCC
Confidence 99999999996543
No 97
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=113.50 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=74.4
Q ss_pred CCCCeEEecCCCCCCCHhHHH---HHHhhhcCCceecccceeEEeccC---CCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 22 NPASVLYIKNLAKDVVPDDFF---FVFGSLFGSIDAAKSGLIVKLMQE---GRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~---~~f~~~~G~i~~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
.+.++|||+|||+++++++|+ ++|++ ||.|..+.+ +.+..+ +..+|||||+|.+.++|++|+..|||..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i---~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVI---NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEE---ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEE---ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 456899999999999999999 99999 999988863 334433 35669999999999999999999999999
Q ss_pred CCceEEEEeccCCCC
Q 033648 96 KGKPMIIQFGRNPAA 110 (114)
Q Consensus 96 ~g~~l~v~~a~~~~~ 110 (114)
+|+.|.|++|+++..
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999998763
No 98
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=3.1e-21 Score=106.07 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=68.6
Q ss_pred eEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEec
Q 033648 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105 (114)
Q Consensus 26 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 105 (114)
+|||+|||+++++++|+.+|++ ||.|..+.+ +.++.+|.++|||||+|.+.++|++|+. +||..++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAML---MFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECC---CBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEE---EecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999 999988863 4466688999999999999999999997 9999999999999976
No 99
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=8.5e-21 Score=111.39 Aligned_cols=82 Identities=27% Similarity=0.490 Sum_probs=71.1
Q ss_pred cCCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 17 NYTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 17 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
......+.++|||+|||+++++++|+.+|++ ||.|..+.+ . +|||||+|.+.++|++|+..|||..++
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i----~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKI----L-------NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEE----E-------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEE----E-------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3444567899999999999999999999999 999987752 1 789999999999999999999999999
Q ss_pred CceEEEEeccCCCC
Q 033648 97 GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 g~~l~v~~a~~~~~ 110 (114)
|+.|.|++++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 92 NQPLEVVYSKLPAK 105 (108)
T ss_dssp TEECEEESCSCCC-
T ss_pred CeEEEEEEecCCCC
Confidence 99999999998754
No 100
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=8.8e-21 Score=106.68 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
.+.-|||+||++.+++++|+++|.+ ||.|..+++. .++|||||+|.+.++|.+|++.|||..+.|++|.|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 4667999999999999999999999 9999887631 26899999999999999999999999999999999
Q ss_pred Eecc
Q 033648 103 QFGR 106 (114)
Q Consensus 103 ~~a~ 106 (114)
.+|.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9994
No 101
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=107.19 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-
Q 033648 18 YTAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK- 96 (114)
Q Consensus 18 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~- 96 (114)
+...++.++|||+|||+++++++|+++|++ ||.|..+.+. + .++||||+|.+.++|++|+..|||..+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~-------~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHV-------K--GDSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEEC-------S--SSCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe-------C--CCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 455677899999999999999999999999 9999876421 2 2789999999999999999999999999
Q ss_pred -CceEEEEeccCCCC
Q 033648 97 -GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 -g~~l~v~~a~~~~~ 110 (114)
|+.|.|++|+++..
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 81 PDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 99999999998764
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=110.88 Aligned_cols=84 Identities=24% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||.++++++|+.+|++ ||.|..+++. .+ .+..+|||||+|.+.++|++|+..|||..++|+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~---~~--~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEII---FN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEEC---CB--TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEE---EC--CCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3466789999999999999999999999 9999887632 22 3457899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|++|+++.
T Consensus 99 l~V~~a~~~~ 108 (109)
T 2err_A 99 IEVNNATARV 108 (109)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 103
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=106.13 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
.....++|||+|||+++++++|+.+|++ ||.|. +. .+ ++..+|||||+|.+.++|++|+..|||..++|+.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~---~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LR---LT----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SE---EE----EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EE---EE----cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3455789999999999999999999999 99985 43 22 2467899999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 033648 100 MIIQFGRNPAA 110 (114)
Q Consensus 100 l~v~~a~~~~~ 110 (114)
|.|++++++..
T Consensus 86 l~V~~a~~~~~ 96 (97)
T 2e5j_A 86 LRVALARQQRD 96 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEcCCCCC
Confidence 99999998753
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=1e-21 Score=111.50 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=70.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
++|||+|||+++++++|+++|++ ||.|..++ .+.+..+|.++|||||+|.+.+ |.+|+..|||..++|+.|.|++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVK---LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEE---ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEE---EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 57999999999999999999999 99998876 3456667899999999999999 9999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
|.+...
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 987653
No 105
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=110.24 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||..+++++|+.+|++ ||.|..+++. . .++||||+|.+.++|.+|+..|||..++|+.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~---~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVF---P------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEE---T------TTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEe---C------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 456789999999999999999999999 9999877531 1 27999999999999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 033648 101 IIQFGRNPAAAK 112 (114)
Q Consensus 101 ~v~~a~~~~~~~ 112 (114)
.|.+++++....
T Consensus 92 ~v~~a~~~~~~~ 103 (109)
T 1x4g_A 92 KCYWGKESPDMT 103 (109)
T ss_dssp EEECCCCCCSSC
T ss_pred EEEecCCCCCCC
Confidence 999999876654
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=110.02 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=73.4
Q ss_pred CCCCeEEecCCCCCC------CHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 22 NPASVLYIKNLAKDV------VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~------~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
..+++|||+|||+.+ ++++|+.+|++ ||.|..+.+. ..+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 456899999999999 77999999999 9999887632 46889999999999999999999999999999
Q ss_pred CCc-eEEEEeccCCC
Q 033648 96 KGK-PMIIQFGRNPA 109 (114)
Q Consensus 96 ~g~-~l~v~~a~~~~ 109 (114)
+|+ +|.|.+|....
T Consensus 87 ~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 87 DKQHTFRVNLFTDFD 101 (105)
T ss_dssp STTCEEEEECSCCCC
T ss_pred CCCceEEEEEcchHh
Confidence 999 99999997543
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=108.79 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC--CcccCC
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN--GYVFKG 97 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~g 97 (114)
..+|+++|||+|||+.+++++|+.+|++ ||.|..+.+ . ..+|||||+|.+.++|..|+..|+ +..+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i----~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILM----L-----KGKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEE----E-----TTTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE----E-----CCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 3467899999999999999999999999 999987642 1 127999999999999999999875 677999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
++|.|++|+.+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999987655
No 108
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=108.20 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=73.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+.+++++|+.+|++ ||.|.. + ..++.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~------~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFED-ALEIRL------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECC------E--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEE------e--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3466789999999999999999999999 997742 2 457889999999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|++++++...
T Consensus 83 l~v~~a~~~~~~ 94 (96)
T 1fjc_A 83 VSLYYTGEKGGT 94 (96)
T ss_dssp EEEEECSSSCCC
T ss_pred EEEEEcCCCCCC
Confidence 999999877643
No 109
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=105.28 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=71.4
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|++ ||.|..+++ .++||||+|.+.++|.+|+..|||..++|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~-----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDV-----------VKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEE-----------CSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEE-----------ECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3467789999999999999999999999 999987753 1449999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|+++++....
T Consensus 73 l~v~~a~~~~~~ 84 (90)
T 2dnp_A 73 INVELSTKGQKK 84 (90)
T ss_dssp CEEEESCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999977543
No 110
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.6e-20 Score=105.78 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=71.3
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhc--CCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLF--GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~--G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
....+.++|||+|||+.+++++|+.+|++ | |.|..+++ .++||||+|.+.++|.+|+..|||..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKK-----------IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEE-----------eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 34467789999999999999999999999 9 77765531 3679999999999999999999999999
Q ss_pred CceEEEEeccCCCCC
Q 033648 97 GKPMIIQFGRNPAAA 111 (114)
Q Consensus 97 g~~l~v~~a~~~~~~ 111 (114)
|+.|.|++|++....
T Consensus 78 g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 78 GSPIEVTLAKPVDKD 92 (99)
T ss_dssp TEEEEEECCCCCCCC
T ss_pred CcEEEEEECCCCCCC
Confidence 999999999987643
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-21 Score=105.81 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=69.8
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
++|||+|||+++++++|+.+|++ ||.+..+. .+.++.+|.++|||||+|.+.++|++|+..++ ..++|+.|.|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECL---VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEE---EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEE---EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 47999999999999999999999 99998876 35566788999999999999999999999999 999999999998
Q ss_pred c
Q 033648 105 G 105 (114)
Q Consensus 105 a 105 (114)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 7
No 112
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=4.4e-20 Score=107.29 Aligned_cols=79 Identities=27% Similarity=0.474 Sum_probs=71.1
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+++++++|+.+|.+ ||.|..+++ .++||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~-----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKK-----------LKDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEE-----------CSSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE-----------ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 456789999999999999999999999 999987652 25699999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|+++++....
T Consensus 76 ~v~~a~~~~~~ 86 (103)
T 2dgu_A 76 EIVFAKPPDQK 86 (103)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEcCCCccc
Confidence 99999977544
No 113
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=105.66 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=67.1
Q ss_pred CCCCe-EEecCCCCCCCHhH----HHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc
Q 033648 22 NPASV-LYIKNLAKDVVPDD----FFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 95 (114)
Q Consensus 22 ~~~~~-l~v~nlp~~~~~~~----l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 95 (114)
+|+.+ |||+|||..+++++ |+++|++ || .|..+ ++ |+|||.|.+.++|.+|++.|||..+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 56666 99999999999887 5589999 94 88654 33 9999999999999999999999999
Q ss_pred CCceEEEEeccCCCCC
Q 033648 96 KGKPMIIQFGRNPAAA 111 (114)
Q Consensus 96 ~g~~l~v~~a~~~~~~ 111 (114)
.||+|+|++|+.+++.
T Consensus 72 ~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 72 FGNRIIVSFTPKNREL 87 (96)
T ss_dssp SSSCCEEESSCCSCCC
T ss_pred CCceEEEEecCCCcce
Confidence 9999999999988765
No 114
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=1e-20 Score=124.10 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcC--CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFG--SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G--~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++|||+|||+++++++|+.+|.+ || .|..++ .+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~---i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIK---FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEE---EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEE---EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 4578999999999999999999999 99 898886 46677899999999999999999999999999999999999
Q ss_pred EEEeccC
Q 033648 101 IIQFGRN 107 (114)
Q Consensus 101 ~v~~a~~ 107 (114)
.|.+|++
T Consensus 143 ~V~~a~~ 149 (229)
T 3q2s_C 143 VVTPVNK 149 (229)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9999874
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=107.89 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC-
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG- 97 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g- 97 (114)
.+..+.++|||+|||+++++++|+.+|.+ ||.|..+++ +.+ +||||+|.+.++|++|+..|||..+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i---~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADV---YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEE---ETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEE---ecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 33466789999999999999999999999 999987753 111 899999999999999999999999999
Q ss_pred ----ceEEEEeccCCCCC
Q 033648 98 ----KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ----~~l~v~~a~~~~~~ 111 (114)
+.|.|++|++....
T Consensus 79 ~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TSCEEEEEEEESSCCSCC
T ss_pred cCcceEEEEEeCCCCCCC
Confidence 99999999987644
No 116
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-21 Score=112.16 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=73.2
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.++|||+|||+++++++|+.+|.. ||.|..++ .+.+..++..+|||||+|.+.++|++|+ .|||..++|+.|.|+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVR---IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEE---ECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEE---EEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 479999999999999999999999 99998886 3446667899999999999999999999 999999999999999
Q ss_pred eccCC
Q 033648 104 FGRNP 108 (114)
Q Consensus 104 ~a~~~ 108 (114)
++++.
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 99854
No 117
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-20 Score=107.90 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=69.9
Q ss_pred CCCCCCeEEecCCCC-CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 20 AGNPASVLYIKNLAK-DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
..++.++|||+|||+ .+++++|+.+|++ ||.|..+.+ .+|||||+|.+.++|..|+..|||..+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI-----------KNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEE-----------ETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457789999999998 9999999999999 999987752 268999999999999999999999999999
Q ss_pred eEEEEeccCCCC
Q 033648 99 PMIIQFGRNPAA 110 (114)
Q Consensus 99 ~l~v~~a~~~~~ 110 (114)
.|.|+++++...
T Consensus 74 ~l~V~~a~~~~~ 85 (96)
T 2kvi_A 74 KLILEVSSSNAR 85 (96)
T ss_dssp TBCEEEEECCCC
T ss_pred EEEEEEcCcCCC
Confidence 999999987654
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=105.93 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=70.4
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCC-ceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC-cccCCc
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGS-IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG-YVFKGK 98 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g-~~~~g~ 98 (114)
..+.++|||+|||+++++++|+.+|++ ||. +..+. + ..++||||+|.+.++|++|+..||| ..++|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~----~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQV----L------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCE----E------EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEE----E------cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 466789999999999999999999999 999 54442 2 2578999999999999999999999 999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|++++++...
T Consensus 74 ~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 74 IMEVDYSVSKKLR 86 (93)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCcccc
Confidence 9999999987654
No 119
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=3.5e-20 Score=110.29 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCC---ceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGS---IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~---i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
..+.++|||+|||+++++++|+++|++ ||. |..++ .+.+. .|+++|||||+|.+.++|++|+. +||..++|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~---i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVH---FIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEE---EEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEE---EEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 456789999999999999999999999 998 66665 34444 48999999999999999999998 99999999
Q ss_pred ceEEEEeccC
Q 033648 98 KPMIIQFGRN 107 (114)
Q Consensus 98 ~~l~v~~a~~ 107 (114)
+.|.|.++..
T Consensus 88 r~i~V~~a~~ 97 (118)
T 2db1_A 88 RYIEVFKSHR 97 (118)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 9999999863
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=5.7e-20 Score=119.06 Aligned_cols=86 Identities=30% Similarity=0.438 Sum_probs=76.4
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
+..|.++|||+|||+++++++|+++|++ ||.|.+++ .+.+..++.++|||||+|.+.++|.+|+..+|+..+.|+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~---i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIR---VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEE---EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 3467789999999999999999999999 99999887 4667889999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.+.++....
T Consensus 87 i~~~~~~~~~ 96 (213)
T 4f02_A 87 VRIMWSQRDP 96 (213)
T ss_dssp CEEEECCCCT
T ss_pred cccccccccc
Confidence 9999987543
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=3e-20 Score=113.14 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=72.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCC---ceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGS---IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~---i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
..+.++|||+|||+++++++|+++|++ ||. |..++ .+.+.. |+++|||||+|.+.++|++|+. +||..++|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~---i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVH---FIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEE---EEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEE---EEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 355689999999999999999999999 998 66665 344554 9999999999999999999998 99999999
Q ss_pred ceEEEEeccCC
Q 033648 98 KPMIIQFGRNP 108 (114)
Q Consensus 98 ~~l~v~~a~~~ 108 (114)
+.|.|.++..+
T Consensus 115 r~i~V~~a~~~ 125 (136)
T 2hgl_A 115 RYIEVFKSHRT 125 (136)
T ss_dssp SEEEEEECCHH
T ss_pred EEEEEEECChH
Confidence 99999998643
No 122
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=4.2e-20 Score=108.54 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=71.3
Q ss_pred CCCCCCeEEecCCCCC-CCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 20 AGNPASVLYIKNLAKD-VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
+..+.++|||+|||+. +++++|+.+|.+ ||.|..+.+ .++||||+|.+.++|++|+..|||..++|+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3455689999999999 999999999999 999987642 579999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q 033648 99 PMIIQFGRNPAAA 111 (114)
Q Consensus 99 ~l~v~~a~~~~~~ 111 (114)
.|.|++++.....
T Consensus 91 ~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 91 TLDINMAGEPKPD 103 (110)
T ss_dssp ECCEEESCCCCSC
T ss_pred EEEEEECCCCCCC
Confidence 9999999865543
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-20 Score=108.94 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=69.8
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
..+++|||+|||.++++++|+.+|++ ||.|..+++ . ..+|||||+|.+.++|.+|+..|||..++|+.|.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~----~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKH----Y-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEE----E-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEE----e-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45689999999999999999999999 999987752 1 4679999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
|.+|+++
T Consensus 95 V~~a~~~ 101 (101)
T 2la4_A 95 TGWGKER 101 (101)
T ss_dssp CCBCCCC
T ss_pred EEeccCC
Confidence 9999864
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=5.7e-20 Score=108.66 Aligned_cols=83 Identities=19% Similarity=0.462 Sum_probs=73.4
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
+..++++|||+|||+.+++++|+.+|++ ||.|..+.+ + ..+..+|||||+|.+.++|.+|+..|||..++|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i---~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRV---G---NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEE---E---CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---e---eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3467789999999999999999999999 999987752 2 34566899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|.+++++.
T Consensus 77 l~v~~a~~~~ 86 (115)
T 3lqv_A 77 LVVLYYNANR 86 (115)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEecCCh
Confidence 9999998643
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=106.33 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=72.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+.+|.+ ||.|..+.+ . ..++||||+|.+.++|.+|+..|||..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~----~-----~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFI----H-----KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEE----E-----TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEE----e-----cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 466789999999999999999999999 999987652 1 247999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|+++++....
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpj_A 82 RVRFACHSASL 92 (99)
T ss_dssp EEEESSCCSCC
T ss_pred EEEEcCCCCCC
Confidence 99999987643
No 126
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.83 E-value=5.8e-20 Score=114.29 Aligned_cols=86 Identities=23% Similarity=0.473 Sum_probs=77.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
+++++|||+|||+++++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..|+|..++|+.|.
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRA-IGPINTCR---IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEE---CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEE---EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence 36789999999999999999999999 99998886 345667889999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 033648 102 IQFGRNPAAA 111 (114)
Q Consensus 102 v~~a~~~~~~ 111 (114)
|.++++....
T Consensus 77 v~~~~~~~~~ 86 (168)
T 1b7f_A 77 VSYARPGGES 86 (168)
T ss_dssp EEECCCCSST
T ss_pred EEecCCCccc
Confidence 9999976543
No 127
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=107.31 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=74.5
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCcee-cccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDA-AKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
....+.++|||+|||+.+++++|+++|.+ ||.|.. +.+ +.+ .+|+++|||||+|.+.++|++|+.. |+..++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i---~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTL---PVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEEC---CBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEE---EEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 33466789999999999999999999999 999875 542 233 6889999999999999999999987 9999999
Q ss_pred ceEEEEeccCCCC
Q 033648 98 KPMIIQFGRNPAA 110 (114)
Q Consensus 98 ~~l~v~~a~~~~~ 110 (114)
+.|.|..+.....
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 9999999986653
No 128
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=107.33 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+++|.+ ||.+ .++ .+.+. +++++|||||+|.+.++|++|+ .+|+..++|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~---i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 83 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVH---IEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRY 83 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEE---EEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEE---EEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcE
Confidence 3456789999999999999999999999 9954 665 34444 8999999999999999999999 57999999999
Q ss_pred EEEEeccCCCC
Q 033648 100 MIIQFGRNPAA 110 (114)
Q Consensus 100 l~v~~a~~~~~ 110 (114)
|.|..+.+...
T Consensus 84 i~V~~~~~~~~ 94 (102)
T 1wez_A 84 VELFLNSTAGT 94 (102)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEECCCCCC
Confidence 99999886654
No 129
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=103.92 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=68.9
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHh-CCcccCCc
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLV-NGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~g~ 98 (114)
...+.++|||+|||+.+++++|+.+|++ ||.|..+++. ..+|||||+|.+.++|.+|+..| +|..++|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~---------~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVV---------QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEE---------CCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 3466789999999999999999999999 9999877531 14799999999999999999999 99999999
Q ss_pred eEEEEecc
Q 033648 99 PMIIQFGR 106 (114)
Q Consensus 99 ~l~v~~a~ 106 (114)
.|.|++|+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=1.1e-19 Score=112.76 Aligned_cols=84 Identities=26% Similarity=0.495 Sum_probs=76.7
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
++++|||+|||+++++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..|||..+.|++|.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~---~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCK---LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEE---EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 4689999999999999999999999 99998886 4556668999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 033648 103 QFGRNPAA 110 (114)
Q Consensus 103 ~~a~~~~~ 110 (114)
.++.+...
T Consensus 77 ~~~~~~~~ 84 (167)
T 1fxl_A 77 SYARPSSA 84 (167)
T ss_dssp EECCCCCG
T ss_pred EecCCCcc
Confidence 99987654
No 131
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=109.18 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=73.7
Q ss_pred CCCCCCeEEe--cCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc--
Q 033648 20 AGNPASVLYI--KNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF-- 95 (114)
Q Consensus 20 ~~~~~~~l~v--~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~-- 95 (114)
...|+.+||| +||++++++++|+++|++ ||.|..+.+. + .+|||||+|.+.++|++|+..|||..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~-------~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMP-------P--NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECC-------T--TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEe-------C--CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 3467789999 779999999999999999 9999776421 1 378999999999999999999999988
Q ss_pred ---CCceEEEEeccCCCCCCCC
Q 033648 96 ---KGKPMIIQFGRNPAAAKPS 114 (114)
Q Consensus 96 ---~g~~l~v~~a~~~~~~~~~ 114 (114)
.|++|.|.|++.....+|+
T Consensus 91 ~lg~g~~l~v~~a~~~p~~~~~ 112 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQWSGPS 112 (114)
T ss_dssp TTSCEEECEEEEESCCCCSSCC
T ss_pred ccCCCcEEEEEecccCcccCCC
Confidence 6899999999988777663
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-20 Score=110.65 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCc-eecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSI-DAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i-~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
...+.++|||+|||+.+++++|+++|.+ ||.+ ..++ .+.+. +|..+|||||+|.+.++|.+|+.. ||..++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~---i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 84 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVH---VLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGR 84 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEE---ECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEE---EEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCe
Confidence 3466789999999999999999999999 9998 6665 23444 899999999999999999999977 99999999
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
.|.|.+|.++
T Consensus 85 ~i~v~~a~~~ 94 (114)
T 2cpy_A 85 EAFVHVVTLE 94 (114)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999999754
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=107.36 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=69.0
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
++|||+|||+++++++|+.+|++ ||.|..+.+ +.+ .+|||||+|.+.++|.+|+..|||..++|+.|.|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i---~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWI---ARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEE---ESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---eeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 57999999999999999999999 999987752 111 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
+++...
T Consensus 72 a~~~~~ 77 (101)
T 2hvz_A 72 STGMPR 77 (101)
T ss_dssp SSSCCC
T ss_pred ccCCCC
Confidence 987653
No 134
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=108.89 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
...++|||+|||+.+++++|+.+|++ ||.|..+.+. ..++||||+|.+.++|++|+..|||..+.|++|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 44679999999999999999999999 9999876531 2678999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|+||+...
T Consensus 78 V~~a~~~~ 85 (111)
T 1whx_A 78 LEWAPIGV 85 (111)
T ss_dssp EEEEETTT
T ss_pred EEECCCCc
Confidence 99998653
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=105.14 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=65.8
Q ss_pred CCeEEecCCCCCC------CHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 24 ASVLYIKNLAKDV------VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 24 ~~~l~v~nlp~~~------~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
+++|||+|||+.+ ++++|+.+|++ ||.|..+.+. ..+|.++|||||+|.+.++|.+|+..|||..++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 3689999999999 67999999999 9999887531 4688999999999999999999999999999999
Q ss_pred c-eEEE
Q 033648 98 K-PMII 102 (114)
Q Consensus 98 ~-~l~v 102 (114)
+ +|+|
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 9 8876
No 136
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=110.58 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCCCCeEEecCCCCC-CCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC--cccCC
Q 033648 21 GNPASVLYIKNLAKD-VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVFKG 97 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~g 97 (114)
.+|+++|||+|||++ +++++|+.+|++ ||.|..+.+ . +.+|||||+|.+.++|..|+..||+ ..+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i----~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYIL----M-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEE----E-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEE----e-----cCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 567899999999998 999999999999 999987752 1 3579999999999999999998865 55999
Q ss_pred ceEEEEeccCCCCC
Q 033648 98 KPMIIQFGRNPAAA 111 (114)
Q Consensus 98 ~~l~v~~a~~~~~~ 111 (114)
++|.|++|+.....
T Consensus 92 r~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 92 RCVKVDLSEKYKKL 105 (112)
T ss_dssp SCCEEEEECSCSSS
T ss_pred EEEEEEECcccccc
Confidence 99999999876654
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.6e-19 Score=110.96 Aligned_cols=84 Identities=25% Similarity=0.422 Sum_probs=76.7
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||..+++++|+.+|++ ||.|..+. .+.+..+|.++|+|||+|.+.++|.+|+..|||..++|++
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGH---VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEE---EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEE---EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 3466789999999999999999999999 99998886 4556678999999999999999999999999999999999
Q ss_pred EEEEeccC
Q 033648 100 MIIQFGRN 107 (114)
Q Consensus 100 l~v~~a~~ 107 (114)
|.|.||+.
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999863
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=104.67 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|.+ ||.|..++. .+.+.. .+.|||+|.+.++|.+|+..|||..++|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~--i~~~~~----~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQ--VNTDSE----TAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEE--ECCSSS----SEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEE--eecCCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3456789999999999999999999999 999987631 122222 233999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|.+|+++.++
T Consensus 84 l~V~~a~~~~~~ 95 (96)
T 2e44_A 84 LKVAYIPDEMAA 95 (96)
T ss_dssp CEEEECCCCCSC
T ss_pred EEEEEcCccccc
Confidence 999999988543
No 139
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=2.5e-19 Score=115.53 Aligned_cols=86 Identities=20% Similarity=0.408 Sum_probs=78.4
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||..+++++|+++|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~---i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSAT---LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEE---EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 45579999999999999999999999 99998886 455667899999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 033648 102 IQFGRNPAAA 111 (114)
Q Consensus 102 v~~a~~~~~~ 111 (114)
|.+|++....
T Consensus 199 V~~a~~~~~~ 208 (216)
T 2qfj_A 199 VGKAVTPPMP 208 (216)
T ss_dssp EEECSSCSST
T ss_pred EEEecCCCCC
Confidence 9999987654
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=1.1e-19 Score=112.11 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=72.2
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+.+++++|+.+|++ ||.|..+.+.. .++|||||+|.+.++|..|+..|||..++|++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVAR--------NPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHH-HSCEEEEEECS--------SSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEee--------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3466789999999999999999999999 99998775321 15899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|++++++.
T Consensus 140 l~v~~a~~~~ 149 (150)
T 2i2y_A 140 VRVELSNGEK 149 (150)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-22 Score=116.99 Aligned_cols=87 Identities=21% Similarity=0.422 Sum_probs=77.7
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCcee--------cccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDA--------AKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--------~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
..+.++|||+|||..+++++|+.+|++ ||.|.. +. .+.+..++..+|||||+|.+.++|.+|+..|||
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMIN---LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 356789999999999999999999999 999977 55 345667889999999999999999999999999
Q ss_pred cccCCceEEEEeccCCCCC
Q 033648 93 YVFKGKPMIIQFGRNPAAA 111 (114)
Q Consensus 93 ~~~~g~~l~v~~a~~~~~~ 111 (114)
..+.|+.|.|++|+++...
T Consensus 80 ~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRADF 98 (116)
Confidence 9999999999999977543
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.81 E-value=7.9e-20 Score=103.43 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=69.9
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
..+++|||+|||+++++++|+.+|++ | .|..+++ + ..+|||||+|.+.++|++|+..|||..++|++|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i-----~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYV-----D----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEE-----E----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEE-----e----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 45688999999999999999999999 9 8877652 1 5789999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 033648 102 IQFGRNPAA 110 (114)
Q Consensus 102 v~~a~~~~~ 110 (114)
|++|+.+..
T Consensus 72 V~~a~~~~~ 80 (88)
T 1wg1_A 72 VQLQPTDAL 80 (88)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCce
Confidence 999987653
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=8.1e-20 Score=115.68 Aligned_cols=83 Identities=28% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.++++|||+|||+.+++++|+++|++ ||.|..+.+ +.+. ++.++|||||+|.+.++|.+|+..|||..++|+.|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i---~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAV---DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEE---CCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---EECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 45689999999999999999999999 999988762 3344 888999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|++|....
T Consensus 161 V~~a~~~~ 168 (177)
T 2f3j_A 161 IQLVASQI 168 (177)
T ss_dssp EEEESSGG
T ss_pred EEEecCCC
Confidence 99998654
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=2.3e-20 Score=102.53 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=67.8
Q ss_pred eEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEec
Q 033648 26 VLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 105 (114)
Q Consensus 26 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 105 (114)
+|||+|||+++++++|+.+|++ ||.+..+.+ +.+..+|.++|||||+|.+.++|.+|+.. ++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIEL---PMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECC---CCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE---EecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999 999988863 44666789999999999999999999974 999999999999876
No 145
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=5.3e-19 Score=112.60 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=77.8
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~---~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFN---LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEE---EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEE---EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 56789999999999999999999999 99998876 455666899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 033648 102 IQFGRNPAA 110 (114)
Q Consensus 102 v~~a~~~~~ 110 (114)
|++|+++..
T Consensus 188 v~~a~~~~~ 196 (198)
T 2yh0_A 188 VQRASVGAK 196 (198)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999998753
No 146
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.80 E-value=4.3e-19 Score=110.78 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=75.2
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
+..+.++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFN---LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEE---EEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEE---EEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 3455789999999999999999999999 99998886 4556668999999999999999999999999999999999
Q ss_pred EEEEecc
Q 033648 100 MIIQFGR 106 (114)
Q Consensus 100 l~v~~a~ 106 (114)
|.|++|.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999973
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=2.9e-19 Score=126.60 Aligned_cols=84 Identities=19% Similarity=0.380 Sum_probs=77.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+.+++++|..+|.+ ||.|..+. ++.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~---i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIH---MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEE---eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 45689999999999999999999999 99998886 455667899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|.+|++..
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998654
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-20 Score=107.72 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=72.5
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCC---ceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGS---IDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~---i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
.....++|||+|||+++++++|+.+|+. ||. |..+++ +.+.. |.++|||||+|.+.++|++|+. +||..++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i---~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHF---LLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEEC---CCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEE---EECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 3466789999999999999999999999 998 666653 33444 8899999999999999999998 9999999
Q ss_pred CceEEEEeccCC
Q 033648 97 GKPMIIQFGRNP 108 (114)
Q Consensus 97 g~~l~v~~a~~~ 108 (114)
|+.|.|.++.++
T Consensus 81 gr~i~V~~a~~~ 92 (107)
T 2lmi_A 81 QRYVEVYEINNE 92 (107)
T ss_dssp SSCCCCEECCHH
T ss_pred CeEEEEEECCHH
Confidence 999999998743
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=101.57 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
....+|||+|||+++++++|+.+|++ ||.|..+ +.+..++. ||||+|.+.++|.+|+. |||..++|+.|.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v-----~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV-----VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE-----EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE-----EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 45679999999999999999999999 9999764 34555555 99999999999999999 999999999999
Q ss_pred EEeccCCCCC
Q 033648 102 IQFGRNPAAA 111 (114)
Q Consensus 102 v~~a~~~~~~ 111 (114)
|+++......
T Consensus 76 V~~a~~~~~~ 85 (94)
T 2e5g_A 76 VRPREQKEFQ 85 (94)
T ss_dssp CBCSCCSCCC
T ss_pred EEECCcCCCC
Confidence 9999866543
No 150
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=106.65 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
....+|||+|||+.+++++|+++|++ | .|..+.+ +.+ ..|+++|||||+|.+.++|++|+ .+||..++||.|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i---~~d-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHL---LKD-HVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEE---CCC-TTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEE---EEC-CCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 34578999999999999999999999 9 7777653 334 35889999999999999999999 7999999999999
Q ss_pred EEeccC
Q 033648 102 IQFGRN 107 (114)
Q Consensus 102 v~~a~~ 107 (114)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 988763
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=100.28 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|+ ++++++|+.+|.+ ||.|..+.+ +..+|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i---------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSM---------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEE---------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEe---------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 456789999996 8999999999999 999987752 2567999999999999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 033648 101 IIQFGRNPAAAK 112 (114)
Q Consensus 101 ~v~~a~~~~~~~ 112 (114)
.|++|+++....
T Consensus 80 ~v~~a~~~~~~~ 91 (97)
T 1x5p_A 80 KVNIARKQPMLD 91 (97)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999999876543
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=6.8e-20 Score=106.22 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+++++++|+.+|++ ||.|..+. .+.+. +|..+|||||+|.+.++|++|+. +|..++|+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVK---IITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEE---EEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEE---EEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 45689999999999999999999999 99998886 34455 89999999999999999999997 99999999999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|.++.+..
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99997553
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=8.2e-19 Score=111.57 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=75.2
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
...+.++|||+|||+++++++|+.+|++ ||.|..++ .+.+..+|.++|||||+|.+.++|.+|+.. ++..+.|+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCV---VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEE---EEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 3456789999999999999999999999 99998886 456677899999999999999999999976 999999999
Q ss_pred EEEEeccCCC
Q 033648 100 MIIQFGRNPA 109 (114)
Q Consensus 100 l~v~~a~~~~ 109 (114)
|.|.++....
T Consensus 84 l~v~~~~~~~ 93 (196)
T 1l3k_A 84 VEPKRAVSRE 93 (196)
T ss_dssp CEEEECCC--
T ss_pred eeeecccCcc
Confidence 9999998654
No 154
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=1.6e-18 Score=108.08 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=68.2
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC--ceEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--KPMI 101 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g--~~l~ 101 (114)
..+|||+||++.+++++|+++|++ ||.|..+.+ .. ...++||||+|.+.++|+.|+..|||..+.| +.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i----~~---k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIIT----FT---KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEE----EE---SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEE----Ee---CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 356899999999999999999999 999988752 21 2357899999999999999999999999965 9999
Q ss_pred EEeccCCC
Q 033648 102 IQFGRNPA 109 (114)
Q Consensus 102 v~~a~~~~ 109 (114)
|+||+++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99999764
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=7e-19 Score=113.64 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=70.1
Q ss_pred CCCCeEEecCCC-CCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 22 NPASVLYIKNLA-KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp-~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++++|||+||| +.+++++|+.+|++ ||.|.+++++. ..+|||||+|.+.++|+.|++.|||..+.|++|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 578899999999 89999999999999 99998876321 247999999999999999999999999999999
Q ss_pred EEEeccCC
Q 033648 101 IIQFGRNP 108 (114)
Q Consensus 101 ~v~~a~~~ 108 (114)
.|.+++..
T Consensus 73 ~v~~s~~~ 80 (205)
T 3tyt_A 73 NVCVSKQP 80 (205)
T ss_dssp EEEECSCS
T ss_pred EEEEccCC
Confidence 99999754
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=105.16 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCc----eecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSI----DAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i----~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
..+..+|||+|||+++++++|+++|++ ||.| ..+. .+.+ .+|+++|||||+|.+.++|++|+.. |+..++
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~---i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGIL---FVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEE---EEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEE---EEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 356789999999999999999999999 9975 4554 3344 6899999999999999999999986 999999
Q ss_pred CceEEEEeccC
Q 033648 97 GKPMIIQFGRN 107 (114)
Q Consensus 97 g~~l~v~~a~~ 107 (114)
||.|.|..+..
T Consensus 94 gR~i~V~~a~~ 104 (123)
T 2dha_A 94 KRYIELFRSTA 104 (123)
T ss_dssp SCEECCEEECH
T ss_pred CeEEEEEECCH
Confidence 99999988763
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.6e-18 Score=110.21 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+.. +|..++|+.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~---i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIE---IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEE---EeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 45589999999999999999999999 99998886 455667899999999999999999999976 89999999999
Q ss_pred EEeccCCCCCC
Q 033648 102 IQFGRNPAAAK 112 (114)
Q Consensus 102 v~~a~~~~~~~ 112 (114)
|.+|.++...+
T Consensus 177 v~~a~~k~~~~ 187 (196)
T 1l3k_A 177 VRKALSKQEMA 187 (196)
T ss_dssp EEECC------
T ss_pred EEecCChhHhc
Confidence 99999876543
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=3.8e-19 Score=110.56 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=73.4
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
+.++|||+|||+.+++++|+.+|++ ||.|..+.+ +.+..+|.++|||||+|.+.++|.+|+. ++|..++|++|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i---~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQL---MLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEEC---CCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEE---EEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 4578999999999999999999999 999988763 3455688999999999999999999997 8999999999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
.+|+++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999875
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=2.7e-18 Score=111.19 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=71.8
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
...+|||+|||+.+++++|+.+|++ ||.|..+++ +.+ .+.++|||||+|.+.++|.+|+..|||..++|++|.|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i---~~d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V 175 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKV---VCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEE---EEE--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccccceECCcccccHHHHHHHHHhh-cCCeEEEEe---ecc--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4568999999999999999999999 999998863 333 3457999999999999999999999999999999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
.+|+++
T Consensus 176 ~~a~~~ 181 (213)
T 4f02_A 176 GRFKSR 181 (213)
T ss_dssp EECCCH
T ss_pred EEcCCC
Confidence 999865
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=4.4e-18 Score=105.74 Aligned_cols=81 Identities=30% Similarity=0.540 Sum_probs=73.4
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC--c
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--K 98 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g--~ 98 (114)
..+.++|||+|||..+++++|+.+|++ ||.|..+. .+.+..+|.++|+|||+|.+.++|.+|+..|||..+.| +
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKN---ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEE---EEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 356789999999999999999999999 99998876 35566688999999999999999999999999999988 9
Q ss_pred eEEEEec
Q 033648 99 PMIIQFG 105 (114)
Q Consensus 99 ~l~v~~a 105 (114)
+|.|.||
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999986
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=3.7e-18 Score=102.86 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=67.1
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeE-EEEEeCCHHHHHHHHHHhCCcccCC--ceE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ-AFVTFPSVELAHRALNLVNGYVFKG--KPM 100 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~g--~~l 100 (114)
--.|||+||++.+++++|+.+|++ ||.|..+.+ +. +.+++ |||+|.+.++|..|+..|||..+.| +.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i---~~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIIT---FT-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEE---EE-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEE---Ec-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 346789999999999999999999 999988752 22 13577 9999999999999999999999988 899
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
+|+||+++.
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999999764
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.3e-18 Score=103.00 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce--
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP-- 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~-- 99 (114)
...++|||+|||+++++++|+++|.+ ||.|..+.+. .. +||||+|.+.++|++|+..|||..++|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~------~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVY------RD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEEC------TT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEe------cC----CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 45689999999999999999999999 9999877531 11 99999999999999999999999999998
Q ss_pred ---EEEEeccCCCC
Q 033648 100 ---MIIQFGRNPAA 110 (114)
Q Consensus 100 ---l~v~~a~~~~~ 110 (114)
+.|..+.+...
T Consensus 83 ~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 83 TAYIRVKVDGPRSP 96 (115)
T ss_dssp CCBCEEEECC----
T ss_pred eEEEEeccCCCCCC
Confidence 88887776543
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.9e-18 Score=105.63 Aligned_cols=81 Identities=25% Similarity=0.308 Sum_probs=71.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEe
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 104 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 104 (114)
++|||+|||+++++++|+.+|++ ||.|..+. +....++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~----i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIK----IMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEE----EECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEE----EEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 47999999999999999999999 99998875 22334577899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 033648 105 GRNPAA 110 (114)
Q Consensus 105 a~~~~~ 110 (114)
+.+...
T Consensus 76 ~~~~~~ 81 (166)
T 3md3_A 76 AFQSQQ 81 (166)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 986653
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=1.8e-19 Score=110.05 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=71.0
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+++++++|+++|++ || +..+.+ +.+. .|+++|||||+|.+.++|++|+ .+|+..++|+.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~~v~i---~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSP-LN-PVRVHI---EIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCS-CC-CSEEEC---CCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEE---EECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 355678999999999999999999999 99 556653 3343 4889999999999999999999 899999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|..+.....
T Consensus 116 ~V~~a~~~~~ 125 (139)
T 2hgn_A 116 ELFLNSTTGA 125 (139)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999887654
No 165
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-18 Score=103.31 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=70.4
Q ss_pred CeEEecCC----CCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCC----HHH----HHHHHH--Hh
Q 033648 25 SVLYIKNL----AKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS----VEL----AHRALN--LV 90 (114)
Q Consensus 25 ~~l~v~nl----p~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~l 90 (114)
+.|||+|| |+.+++.+|+.+|+. ||.|.+++ .+.++.||.++|||||+|.+ .++ |.+|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~---li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFE---AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEE---EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEE---EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 57999999 999999999999999 99999997 68899999999999999996 333 788888 78
Q ss_pred CCcccCCceEEEEeccC
Q 033648 91 NGYVFKGKPMIIQFGRN 107 (114)
Q Consensus 91 ~g~~~~g~~l~v~~a~~ 107 (114)
||..++|+.|+|.+.+.
T Consensus 79 ng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TCEEETTEEEEEEECCT
T ss_pred cCCeecCcEEEEEECcc
Confidence 99999999999998664
No 166
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.77 E-value=2.5e-18 Score=107.73 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=72.2
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..+.++|||+|||+.+++++|+.+|++ ||.|.. + ..++..+|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~------~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRL------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEE------E--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEE------e--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345689999999999999999999999 998742 2 5678899999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
.|++|++++
T Consensus 167 ~v~~a~~k~ 175 (175)
T 1fje_B 167 SLYYTGEKG 175 (175)
T ss_dssp EEEECSSCC
T ss_pred EEEecCCCC
Confidence 999998763
No 167
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.77 E-value=2.9e-18 Score=102.41 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=69.8
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
..++++|||+|+ ++++++|+.+|++ ||.|..+.+ ...+|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i---------~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSM---------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEE---------ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEE---------eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456789999996 6999999999999 999987752 1578999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 033648 101 IIQFGRNPAAA 111 (114)
Q Consensus 101 ~v~~a~~~~~~ 111 (114)
.|.++++....
T Consensus 104 ~V~~a~~~~~~ 114 (121)
T 2bz2_A 104 KVNIARKQPML 114 (121)
T ss_dssp EEEECCSSCC-
T ss_pred EEEEeCCCCCC
Confidence 99999977644
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=7e-18 Score=104.53 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=72.0
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce--
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP-- 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~-- 99 (114)
.+.++|||+|||..+++++|+.+|++ ||.+..++ .+.+..+|.++|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSR---ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEE---EEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 45688999999999999999999999 99998876 3556668899999999999999999999999999999975
Q ss_pred EEEEec
Q 033648 100 MIIQFG 105 (114)
Q Consensus 100 l~v~~a 105 (114)
|.|.||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 888886
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=8.5e-18 Score=100.69 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=67.4
Q ss_pred CCCCCe--EEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeE-EEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 21 GNPASV--LYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQ-AFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 21 ~~~~~~--l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
.+|+.+ |||+||++.+++++|+.+|++ ||.|..+.+ .. . .|| |||+|.+.++|..|+..|||..+.|
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i----~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVI----FK-R----NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEE----EE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEE----Ee-C----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 345554 679999999999999999999 999988752 22 1 275 9999999999999999999999987
Q ss_pred --ceEEEEeccCCC
Q 033648 98 --KPMIIQFGRNPA 109 (114)
Q Consensus 98 --~~l~v~~a~~~~ 109 (114)
+.|.|++|++..
T Consensus 90 ~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 90 GCCTLKIEYARPTR 103 (124)
T ss_dssp TBSEEEEECCSCSC
T ss_pred CCeEEEEEEecCCc
Confidence 689999999775
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=8.2e-19 Score=105.44 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=69.1
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCce--ecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSID--AAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~--~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
...+.++|||+|||+.+++++|+++|++ | .+. .+++ +.+.. |+++|||||+|.+.++|++|+. +++..++|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i---~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITL---PVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGH 110 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEEC---CCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEE---EECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECC
Confidence 3456789999999999999999999999 9 455 6653 33444 8999999999999999999997 47899999
Q ss_pred ceEEEEeccCC
Q 033648 98 KPMIIQFGRNP 108 (114)
Q Consensus 98 ~~l~v~~a~~~ 108 (114)
|.|.|..+..+
T Consensus 111 R~I~V~~a~~~ 121 (126)
T 2hgm_A 111 RYIEVFKSSQE 121 (126)
T ss_dssp BCCCCEEECHH
T ss_pred EEEEEEECCHH
Confidence 99999988644
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=3.1e-18 Score=97.17 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcc--cCC
Q 033648 20 AGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV--FKG 97 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~g 97 (114)
..++.++|||+|||+++++++|+.+|++ ||.|.+++++. .++|||||+|.+.++|++ ++|.. +.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g 73 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKG 73 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCC
Confidence 3567889999999999999999999999 99998876432 278999999999999883 56665 569
Q ss_pred ceEEEEeccCCCC
Q 033648 98 KPMIIQFGRNPAA 110 (114)
Q Consensus 98 ~~l~v~~a~~~~~ 110 (114)
+.|.|.+|.++..
T Consensus 74 ~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 74 ISVHISNAEPKHN 86 (89)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEEEcCCCCc
Confidence 9999999997764
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=9.6e-18 Score=104.72 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=70.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC---Cc
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK---GK 98 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---g~ 98 (114)
.+.++|||+|||+.+++++|+++|++ ||.|..+.+ + ...+|.++|||||+|.+.++|.+|+..|||..+. |+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~---~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRI---L-RGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEE---E-ECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEE---E-ECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 35689999999999999999999999 999988752 3 3356889999999999999999999999998876 49
Q ss_pred eEEEEecc
Q 033648 99 PMIIQFGR 106 (114)
Q Consensus 99 ~l~v~~a~ 106 (114)
+|.|.||.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999984
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=1.1e-17 Score=97.68 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCCCCeEEecCCCC-----CCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 21 GNPASVLYIKNLAK-----DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 21 ~~~~~~l~v~nlp~-----~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
..++.+|+|.|+.. +-++++|++.|++ ||.|.++. .+.++. ++.++|++||+|.+.++|.+|+..|||..
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~---i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCV---IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEE---EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEE---EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 36788999999963 2367899999999 99999886 333433 36789999999999999999999999999
Q ss_pred cCCceEEEEeccC
Q 033648 95 FKGKPMIIQFGRN 107 (114)
Q Consensus 95 ~~g~~l~v~~a~~ 107 (114)
++||.|.|.++..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999974
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=4.4e-18 Score=109.63 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=72.1
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
+.++|||+|||+++++++|+.+|++ ||.|..++ .+.+..+|..+|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSID---MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEE---ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEE---EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3579999999999999999999999 99998886 3445568889999999999999999999999999999999999
Q ss_pred EeccCCC
Q 033648 103 QFGRNPA 109 (114)
Q Consensus 103 ~~a~~~~ 109 (114)
.++....
T Consensus 103 ~~~~~~~ 109 (216)
T 2qfj_A 103 GRPSNIG 109 (216)
T ss_dssp ECCSCCG
T ss_pred ecCCCcc
Confidence 9887654
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=1.3e-17 Score=111.66 Aligned_cols=83 Identities=35% Similarity=0.585 Sum_probs=74.3
Q ss_pred CCCCCeEEecCCCCCCCHhHHH----HHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFF----FVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
.+++++|||+|||+++++++|+ .+|++ ||.|..+++ ..+++.+|||||+|.+.++|.+|+..|||..+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILV------SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEE------cCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 4778999999999999999976 89999 999987652 237889999999999999999999999999999
Q ss_pred CceEEEEeccCCCC
Q 033648 97 GKPMIIQFGRNPAA 110 (114)
Q Consensus 97 g~~l~v~~a~~~~~ 110 (114)
|+.|.|.+++.+..
T Consensus 79 g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 79 DKPMRIQYAKTDSD 92 (282)
T ss_pred CcEEEEEEeccCcc
Confidence 99999999987653
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=3.5e-18 Score=96.12 Aligned_cols=73 Identities=23% Similarity=0.418 Sum_probs=63.6
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhc----C-------CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLF----G-------SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~----G-------~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
..+.++|||+|||+++++++|+.+|++ | | .+..+++ ...+|||||+|.+.++|.+|+ .
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~---------~~~kg~afV~f~~~~~a~~A~-~ 71 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAM-A 71 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEE---------CSSSSEEEEEESSHHHHHHHG-G
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEe---------cCCCcEEEEEcCCHHHHHHHH-h
Confidence 356789999999999999999999999 9 7 6665542 134899999999999999999 9
Q ss_pred hCCcccCCceEEEEe
Q 033648 90 VNGYVFKGKPMIIQF 104 (114)
Q Consensus 90 l~g~~~~g~~l~v~~ 104 (114)
|||..++|+.|.|+.
T Consensus 72 l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 72 FDGIIFQGQSLKIRR 86 (87)
T ss_dssp GTTCEETTEECEEEC
T ss_pred cCCCEECCeEEEEeC
Confidence 999999999999974
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=1.8e-17 Score=103.44 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=72.6
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCC--CceeEEEEEeCCHHHHHHHHHHhCCcccC---C
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEG--RMRGQAFVTFPSVELAHRALNLVNGYVFK---G 97 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---g 97 (114)
+.++|||+|||+++++++|+++|++ ||.|..++ .+.+..++ .++|||||+|.+.++|.+|+..|||..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~---i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEIN---VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEE---EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEE---EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 4678999999999999999999999 99999886 45566665 88999999999999999999999998875 6
Q ss_pred ceEEEEeccCCC
Q 033648 98 KPMIIQFGRNPA 109 (114)
Q Consensus 98 ~~l~v~~a~~~~ 109 (114)
+.+.+.++....
T Consensus 78 ~~~~~~~~~~~~ 89 (175)
T 3nmr_A 78 HPIQMKPADSEK 89 (175)
T ss_dssp SCCEEEECGGGC
T ss_pred cceEEccccccc
Confidence 788888887554
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=2.1e-18 Score=108.06 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=74.6
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
....+.++|||+|||+++++++|+.+|.. ||.+..+ .+.+..+|.++|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~----~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISE-LFAKNDL----AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHTC----CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcceE----EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 34567899999999999999999999999 9987652 2445567889999999999999999999 5999999999
Q ss_pred eEEEEeccCCCC
Q 033648 99 PMIIQFGRNPAA 110 (114)
Q Consensus 99 ~l~v~~a~~~~~ 110 (114)
+|.|.++++...
T Consensus 82 ~l~v~~~~~~~~ 93 (175)
T 1fje_B 82 EIKLEKPKGRDS 93 (175)
T ss_dssp EEEEECCCCSSC
T ss_pred EEEEecCCCccc
Confidence 999999987543
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.5e-18 Score=99.29 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=60.6
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccC---CCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE---GRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
..+.++|||+|||+++++++|+++|++ ||.|. +. .+.+..+ |.++|||||+|.+.++|++|+..|++ ++|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~---~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G 77 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VD---WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDG 77 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EE---CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EE---EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCC
Confidence 356789999999999999999999999 99997 54 2334444 78899999999999999999999832 444
Q ss_pred ceEEEE
Q 033648 98 KPMIIQ 103 (114)
Q Consensus 98 ~~l~v~ 103 (114)
+.+.+.
T Consensus 78 ~~~~~~ 83 (114)
T 2dnl_A 78 KLYLCV 83 (114)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 444443
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=3.8e-17 Score=109.45 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=75.5
Q ss_pred CCCCeEEecCCCCCC-CHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 22 NPASVLYIKNLAKDV-VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~-~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.+.++|||+|||+.+ ++++|+.+|++ ||.|..++ +....+|.++|+|||+|.+.++|.+|+..|||..++|++|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~----i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQ----LACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEE----EEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEE----EEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 567899999999995 99999999999 99998875 3334578899999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|.+++++..
T Consensus 257 ~v~~a~~~~~ 266 (284)
T 3smz_A 257 RVSFCAPGPP 266 (284)
T ss_dssp EEEECCSSSC
T ss_pred EEEEecCCCc
Confidence 9999998754
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.73 E-value=1.7e-17 Score=108.44 Aligned_cols=81 Identities=30% Similarity=0.493 Sum_probs=71.4
Q ss_pred CCCCCCCeEEecCCCC-CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC
Q 033648 19 TAGNPASVLYIKNLAK-DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 97 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 97 (114)
.+.+++++|||+|||+ .+++++|+++|++ ||.|..+++. .+ .+|||||+|.+.++|.+|+..|||..+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~---~~-----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKIL---FN-----KKENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEEC---CT-----TSCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEE---EC-----CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3356789999999999 9999999999999 9999877532 11 27899999999999999999999999999
Q ss_pred ceEEEEeccCC
Q 033648 98 KPMIIQFGRNP 108 (114)
Q Consensus 98 ~~l~v~~a~~~ 108 (114)
+.|.|.+++..
T Consensus 100 ~~l~v~~a~~~ 110 (229)
T 2adc_A 100 KPIRITLSKHQ 110 (229)
T ss_dssp SBCEEECCSCC
T ss_pred eEEEEEEecCc
Confidence 99999999865
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=3.3e-17 Score=109.66 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=69.6
Q ss_pred CCCCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-C
Q 033648 19 TAGNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-G 97 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g 97 (114)
....++++|||+|||..+++++|+++|++ ||.|..+++ +. + .+|||||+|.+.++|.+|+..|||..+. |
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~---~~----~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRL---VP----G-RHDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEE---ec----C-CCcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 34456789999999999999999999999 999988753 21 1 2589999999999999999999999999 9
Q ss_pred ceEEEEecc
Q 033648 98 KPMIIQFGR 106 (114)
Q Consensus 98 ~~l~v~~a~ 106 (114)
+.|+|+||+
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999987
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=5.1e-17 Score=108.83 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=77.8
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.++.++|||+|||+.+++++|+.+|++ ||.|..+. .+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRP-FGSLERCF---LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEE---EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 456789999999999999999999999 99998886 45667789999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 033648 101 IIQFGRNPA 109 (114)
Q Consensus 101 ~v~~a~~~~ 109 (114)
.|.++.+..
T Consensus 168 ~v~~a~~~~ 176 (284)
T 3smz_A 168 YVHWTDAGQ 176 (284)
T ss_dssp EEEECCGGG
T ss_pred EEEECCCCC
Confidence 999998654
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.73 E-value=1.4e-17 Score=112.03 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCCCCeEEecCCCCC-CCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 21 GNPASVLYIKNLAKD-VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
..+.++|||+|||+. +++++|+.+|++ ||.|..+++. .+.. +|.++|||||+|.+.++|.+|+ .|||..++|+
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~---~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~ 281 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIP---AGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR 281 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECC---SCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEE---ecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc
Confidence 456789999999999 999999999999 9999887632 2333 4889999999999999999999 9999999999
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
.|.|.+|+++
T Consensus 282 ~i~V~~a~~k 291 (292)
T 2ghp_A 282 EISVSLADKK 291 (292)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999999876
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=9.4e-18 Score=110.44 Aligned_cols=79 Identities=19% Similarity=0.380 Sum_probs=68.9
Q ss_pred CCCCCeEEecCCCCCC---------CHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 21 GNPASVLYIKNLAKDV---------VPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~---------~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
..+.++|||+||+..+ ++++|+.+|++ ||.|..+++ + ..+|||||.|.+.++|+.|+..|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v---~------~~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRY---V------ESKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEE---E------GGGTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEE---E------CCCCEEEEEeCCHHHHHHHHHHhC
Confidence 4567899999999988 79999999999 999988763 1 258999999999999999999999
Q ss_pred Cccc------------CCceEEEEeccCCC
Q 033648 92 GYVF------------KGKPMIIQFGRNPA 109 (114)
Q Consensus 92 g~~~------------~g~~l~v~~a~~~~ 109 (114)
|..+ .|+.|.|.||+.+.
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999 89999999999764
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8e-18 Score=95.03 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=64.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc--ccCCce
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY--VFKGKP 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~g~~ 99 (114)
.++++|||+|||+++++++|+.+|++ ||.|..+++. ..++|||||+|.+.++|+++ ++. .+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~--------~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIP--------KPFRAFAFVTFADDQIAQSL----CGEDLIIKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECC--------SSCCSCCEEECSCHHHHHHT----TTCEEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEe--------cCCCCEEEEEECCHHHHHHH----hcCCceeCCEE
Confidence 46789999999999999999999999 9999877632 12689999999999999754 444 458999
Q ss_pred EEEEeccCCCCC
Q 033648 100 MIIQFGRNPAAA 111 (114)
Q Consensus 100 l~v~~a~~~~~~ 111 (114)
|.|.+++++...
T Consensus 70 l~v~~a~~~~~~ 81 (88)
T 1wf0_A 70 VHISNAEPKHNS 81 (88)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 999999987654
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=7.1e-17 Score=103.37 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 103 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 103 (114)
.++|||+|||+.+++++|+.+|++ ||.|..+.+ +. ..++.++|||||+|.+.++|.+|+..++ ..++|++|.|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i---~~-~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQM---RR-TLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLIL 182 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEE---EE-CTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEE---EE-CCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEE
Confidence 478999999999999999999999 999988752 23 3468899999999999999999997665 58999999999
Q ss_pred eccCCCC
Q 033648 104 FGRNPAA 110 (114)
Q Consensus 104 ~a~~~~~ 110 (114)
+++.--+
T Consensus 183 ~~~~y~~ 189 (193)
T 2voo_A 183 FKDDYFA 189 (193)
T ss_dssp ETTTC--
T ss_pred EhHHHHH
Confidence 9875433
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.2e-17 Score=103.68 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=70.7
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
++++|||+|||+++++++|+++|++ ||.|..+++ +.+..+|.++|||||+|.+.++|.+|+. ++..++|+.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i---~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKI---MKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEEC---CCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEE---EECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccc
Confidence 5689999999999999999999999 999988863 4466789999999999999999999998 467899999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
.++.+.
T Consensus 76 ~~~~~~ 81 (167)
T 2cjk_A 76 KRAIPR 81 (167)
T ss_dssp EECCCH
T ss_pred ccccch
Confidence 988653
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-16 Score=93.04 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=69.9
Q ss_pred CCCCCCeEEecCCCCCCC-----------HhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHH
Q 033648 20 AGNPASVLYIKNLAKDVV-----------PDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALN 88 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~~~~-----------~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 88 (114)
...++++|+|.||..... +++|+.+|++ ||.|..+. +.+ ...+|||||+|.+.++|.+|+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~----i~~---~~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLL----LFD---RHPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEE----EET---TCTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEE----Eec---CCCCEEEEEEECCHHHHHHHHH
Confidence 456789999999954332 5789999999 99998763 222 2378999999999999999999
Q ss_pred HhCCcccCCceEEEEeccCCCCC
Q 033648 89 LVNGYVFKGKPMIIQFGRNPAAA 111 (114)
Q Consensus 89 ~l~g~~~~g~~l~v~~a~~~~~~ 111 (114)
.|||..++|++|.|.++.+....
T Consensus 83 ~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp HSTTCEETTEECEEEECCSCCCS
T ss_pred HcCCCEECCcEEEEEEeCCCCCc
Confidence 99999999999999999876543
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=5.8e-17 Score=104.64 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=66.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCc--eecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc-
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSI--DAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK- 98 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i--~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~- 98 (114)
+|+.+|||+|||+.+++++|+++|++ ||.| ..+++ .. ..+..+|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~----~~-~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKV----FS-GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEE----CS-CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEE----Ec-CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 56789999999999999999999999 9998 55542 12 2245569999999999999999999999999887
Q ss_pred ---eEEEEec
Q 033648 99 ---PMIIQFG 105 (114)
Q Consensus 99 ---~l~v~~a 105 (114)
++.|.+|
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 6777775
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=3.4e-17 Score=104.21 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccc--eeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCce
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSG--LIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~--~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 99 (114)
..+++|||+|||+++++++|+++|++ ||.+..+... ..+.....+..+|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 35689999999999999999999999 9644332100 01223344667899999999999999999 89999999999
Q ss_pred EEEEeccCC
Q 033648 100 MIIQFGRNP 108 (114)
Q Consensus 100 l~v~~a~~~ 108 (114)
|.|.+++..
T Consensus 80 i~v~~~~~~ 88 (198)
T 2yh0_A 80 LKIRRPHDY 88 (198)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998865
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=102.05 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-Cce
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GKP 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~ 99 (114)
+++++|||+|||..+++++|+++|++ || .|..+++. . ..+|+|||+|.+.++|.+|+..|||..++ |++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~----~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFF----Q----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEES----S----TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEE----e----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 56889999999999999999999999 99 88776521 1 23789999999999999999999999999 999
Q ss_pred EEEEeccCC
Q 033648 100 MIIQFGRNP 108 (114)
Q Consensus 100 l~v~~a~~~ 108 (114)
|.|.|+++.
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=103.45 Aligned_cols=76 Identities=29% Similarity=0.537 Sum_probs=68.2
Q ss_pred CCeEEecCCCC-CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEE
Q 033648 24 ASVLYIKNLAK-DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 102 (114)
Q Consensus 24 ~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v 102 (114)
+++|||+|||+ .+++++|+.+|++ ||.|..+++.. ..+|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILF--------NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECST--------TCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 57899999999 9999999999999 99998775321 12789999999999999999999999999999999
Q ss_pred EeccCC
Q 033648 103 QFGRNP 108 (114)
Q Consensus 103 ~~a~~~ 108 (114)
.+++..
T Consensus 74 ~~a~~~ 79 (198)
T 1qm9_A 74 TLSKHQ 79 (198)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1e-16 Score=99.93 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=67.5
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccc--eeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSG--LIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~--~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
+.++|||+|||+++++++|+++|++ ||.+..+... ..+.....+..+|||||+|.+.++|.+|+ .+||..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 5689999999999999999999999 9433211000 01222234567899999999999999999 899999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|.+++....
T Consensus 81 ~v~~~~~~~~ 90 (172)
T 2g4b_A 81 KIRRPHDYQP 90 (172)
T ss_dssp EEECCSSCCC
T ss_pred eecCCcccCC
Confidence 9999886543
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=2.2e-16 Score=103.20 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=69.3
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC-Cce
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GKP 99 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~ 99 (114)
+++++|||+|||+.+++++|+.+|++ || .|..+++. . ..+|+|||+|.+.++|.+|+..|||..++ |+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~---~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFF---Q-----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEEC---S-----SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEE---E-----CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 56789999999999999999999999 99 88776521 1 24689999999999999999999999999 999
Q ss_pred EEEEeccCC
Q 033648 100 MIIQFGRNP 108 (114)
Q Consensus 100 l~v~~a~~~ 108 (114)
|.|.|+++.
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999864
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=3.2e-16 Score=104.22 Aligned_cols=77 Identities=27% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 101 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~ 101 (114)
.+.++|||+|||+++++++|+.+|++ ||.|..+.+ .+.+|||||.|.+.++|..|+..+||..+.|+.|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i---------~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFI---------NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEE---------ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEE---------eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 55689999999999999999999999 999987752 13579999999999999999999999999999999
Q ss_pred EEeccCC
Q 033648 102 IQFGRNP 108 (114)
Q Consensus 102 v~~a~~~ 108 (114)
|.++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9998754
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=9.1e-16 Score=102.02 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=72.8
Q ss_pred CCCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCc-ccC---
Q 033648 21 GNPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY-VFK--- 96 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~-~~~--- 96 (114)
..++++|||+|||+.+++++|+.+|++ ||.|..+. .+.+ .+|.++|||||+|.+.++|.+|+..||+. .+.
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~---i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAV---VVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEE---EEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHh-cCCeEEEE---eeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 456789999999999999999999999 99998886 3444 68999999999999999999999999554 444
Q ss_pred CceEEEEeccCCC
Q 033648 97 GKPMIIQFGRNPA 109 (114)
Q Consensus 97 g~~l~v~~a~~~~ 109 (114)
+++|.|.++.+..
T Consensus 168 ~r~i~v~~~~~~~ 180 (261)
T 3sde_A 168 PRPVIVEPMEQFD 180 (261)
T ss_dssp CCBCEEEECCCEE
T ss_pred CceEEEeeccccC
Confidence 9999999998653
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=3.4e-16 Score=91.27 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=68.0
Q ss_pred CCCCCeEEecCC--CCCCC--------HhHHHHHHhhhcCCceecccceeEEeccC--CCceeEEEEEeCCHHHHHHHHH
Q 033648 21 GNPASVLYIKNL--AKDVV--------PDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAHRALN 88 (114)
Q Consensus 21 ~~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~~G~i~~~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~ 88 (114)
+.|+.+|.+.|+ |.... .++|++.|++ ||.|.++.++ .+..+ +.++|++||+|.+.++|.+|+.
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~---~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~ 77 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIP---RPVDGVEVPGCGKIFVEFTSVFDCQKAMQ 77 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECC---CCBTTBCCTTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEe---ccCCCCCcCCcEEEEEEECCHHHHHHHHH
Confidence 357889999998 33333 3689999999 9999988642 23322 3678999999999999999999
Q ss_pred HhCCcccCCceEEEEeccC
Q 033648 89 LVNGYVFKGKPMIIQFGRN 107 (114)
Q Consensus 89 ~l~g~~~~g~~l~v~~a~~ 107 (114)
.|||..++||.|.|.++..
T Consensus 78 ~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 78 GLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHTTCEETTEECEEEEECH
T ss_pred HhCCCEeCCCEEEEEEeCH
Confidence 9999999999999999863
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.66 E-value=4.1e-16 Score=104.79 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcC-CceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceE
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFG-SIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 100 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l 100 (114)
.+.++|||+|||+.+++++|+.+|.+ || .|..+.+. .+ ..|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~---~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLP---SL-RFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEE---eC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 35789999999999999999999999 99 99887632 22 337789999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 033648 101 IIQFGRNPAA 110 (114)
Q Consensus 101 ~v~~a~~~~~ 110 (114)
.|.++.+...
T Consensus 190 ~v~~a~~~~~ 199 (292)
T 2ghp_A 190 VTKVSNPLEK 199 (292)
T ss_dssp EEEECCCC--
T ss_pred EEEECCCCcc
Confidence 9999987653
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=1.5e-15 Score=90.25 Aligned_cols=82 Identities=20% Similarity=0.402 Sum_probs=68.8
Q ss_pred CCCCeEEecCCCC--CC---CHhHHHHHHhhhcCCceecccceeEEecc----CCCceeEEEEEeCCHHHHHHHHHHhCC
Q 033648 22 NPASVLYIKNLAK--DV---VPDDFFFVFGSLFGSIDAAKSGLIVKLMQ----EGRMRGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 22 ~~~~~l~v~nlp~--~~---~~~~l~~~f~~~~G~i~~~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
+|+.+|++.|+-. .+ .+++|++.|++ ||.|.++.+ +.+.. ++.++|++||+|.+.++|.+|+..|||
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I---~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVII---YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEE---EEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEE---eecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 5788999999842 22 35789999999 999998863 33433 457789999999999999999999999
Q ss_pred cccCCceEEEEeccC
Q 033648 93 YVFKGKPMIIQFGRN 107 (114)
Q Consensus 93 ~~~~g~~l~v~~a~~ 107 (114)
..++||.|.|.++..
T Consensus 94 r~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCcEEEEEEcCh
Confidence 999999999999863
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=1.6e-16 Score=92.58 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=59.0
Q ss_pred ecCCCCCCCHhHHHHHH------------hhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 29 IKNLAKDVVPDDFFFVF------------GSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 29 v~nlp~~~~~~~l~~~f------------~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
+.+||+.+++++|++.| ++ ||.|..+.+ ....++.++|||||.|.+.++|.+|+..|||..++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i----~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNV----CDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEE----CCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEE----EeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 45566666666666555 99 999998863 23345788999999999999999999999999999
Q ss_pred CceEEEEec
Q 033648 97 GKPMIIQFG 105 (114)
Q Consensus 97 g~~l~v~~a 105 (114)
||+|.|+++
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999987
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=6.6e-15 Score=101.36 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=65.4
Q ss_pred CCCCCCeEEecC--CCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCccc--
Q 033648 20 AGNPASVLYIKN--LAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF-- 95 (114)
Q Consensus 20 ~~~~~~~l~v~n--lp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~-- 95 (114)
..+|+.+|||+| |+..+++++|+++|++ ||.|..+.+ . ..+|||||+|.+.++|++|++.|||..+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~-----~----~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLM-----P----PNKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEEC-----C----TTCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEE-----e----CCCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 368889999999 5789999999999999 999976542 1 1579999999999999999999999987
Q ss_pred -CCc--eEEEEecc
Q 033648 96 -KGK--PMIIQFGR 106 (114)
Q Consensus 96 -~g~--~l~v~~a~ 106 (114)
.|+ .|.|.|+.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 345 68888875
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-14 Score=81.83 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=57.0
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEeccCCCCC
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 111 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 111 (114)
..+++++|+.+|++ ||.|..+.+ . +..+|||||+|.+.++|+.|+..+++ +.|++|+|+|+++....
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i----~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVL----S----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEE----E----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEE----c----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 45899999999999 999988752 1 46789999999999999999988554 67999999999977544
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=1.3e-13 Score=81.43 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=63.6
Q ss_pred CCCCCeEEecCCCCCCC----------HhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHh
Q 033648 21 GNPASVLYIKNLAKDVV----------PDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLV 90 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~~~----------~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 90 (114)
..|+.+|.+.|+=..-. +++|++.|++ ||.|.++.+ ... ..+|++||+|.+.++|.+|+..|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i-----~~~--~~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYV-----DKN--SAQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEE-----CTT--CTTCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEE-----ecC--CCcEEEEEEECCHHHHHHHHHHh
Confidence 45678899999843221 3578999999 999987642 111 25899999999999999999999
Q ss_pred CCcccCCceEEEEecc
Q 033648 91 NGYVFKGKPMIIQFGR 106 (114)
Q Consensus 91 ~g~~~~g~~l~v~~a~ 106 (114)
||..++||.|.|.++.
T Consensus 76 nG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 76 HGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCEETTEECEEEEEC
T ss_pred CCCEECCEEEEEEEEc
Confidence 9999999999999986
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=73.25 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=62.2
Q ss_pred CCCCCCeEEecCCCC----CCCH----hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 20 AGNPASVLYIKNLAK----DVVP----DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 20 ~~~~~~~l~v~nlp~----~~~~----~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
.++|..|+.|...+. .+-. .+|...|.+ ||.+..+++. . ..+||+|.+.++|.+|+. ||
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~-------~----d~~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFV-------E----DKMWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEEC-------S----SSEEEEESSHHHHHHGGG-GT
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEe-------c----CCEEEEECChHHHHHHHh-cC
Confidence 468889999988772 2322 578999999 9988766531 1 228999999999999997 99
Q ss_pred CcccCCceEEEEeccCCC
Q 033648 92 GYVFKGKPMIIQFGRNPA 109 (114)
Q Consensus 92 g~~~~g~~l~v~~a~~~~ 109 (114)
|..++||.|+|+++.++=
T Consensus 70 G~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 70 GKELLNRTITIALKSPSG 87 (91)
T ss_dssp TCEETTEEEEEEECCCSS
T ss_pred CeEeCCeEEEEEeCCCCc
Confidence 999999999999998763
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.9e-11 Score=72.55 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=64.5
Q ss_pred CCCCCeEEecCCCCC-CCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCC-HHHHHHHHHHhC--CcccC
Q 033648 21 GNPASVLYIKNLAKD-VVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPS-VELAHRALNLVN--GYVFK 96 (114)
Q Consensus 21 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--g~~~~ 96 (114)
-++++.|||+||++. +++++|+.+|++ ||.|.++.+. .| ...|||.|.+ .++|..|+..+| |..+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~-------~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFV-------RG--AKEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECC-------TT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEe-------cC--CCEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 367899999999999 999999999999 9999877531 12 2259999999 899999999995 67799
Q ss_pred CceEEEEeccC
Q 033648 97 GKPMIIQFGRN 107 (114)
Q Consensus 97 g~~l~v~~a~~ 107 (114)
|..++++....
T Consensus 85 g~~~~~evL~G 95 (121)
T 1owx_A 85 NKEVTWEVLEG 95 (121)
T ss_dssp SSSEEEEECCH
T ss_pred CcEEEEEECCC
Confidence 99999887653
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.24 E-value=5e-11 Score=77.32 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=57.5
Q ss_pred CCHhHHHHHHhhhcCCceecccceeEEec----cCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEecc
Q 033648 36 VVPDDFFFVFGSLFGSIDAAKSGLIVKLM----QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 36 ~~~~~l~~~f~~~~G~i~~~~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 106 (114)
-.++++++.|++ ||.|.++.+ +.+. .++.++|++||+|.+.++|.+|+..|||..++||+|.+.++.
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v---~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVII---YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEE---EEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHc-cCCeEEEEE---ecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 345789999999 999998863 3232 345889999999999999999999999999999999999975
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=9.4e-11 Score=66.26 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=60.2
Q ss_pred CCCCCCCeEEecCCCCC------CCH---hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHH
Q 033648 19 TAGNPASVLYIKNLAKD------VVP---DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNL 89 (114)
Q Consensus 19 ~~~~~~~~l~v~nlp~~------~~~---~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 89 (114)
..++|..|+.|..++.. ..+ .+|.+.|.. ||.+..+++ +.+ -+||+|.+.++|.+|+.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~---v~d--------~~fVtF~d~~sAl~AI~- 76 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRI---NQG--------QMLVTFADSHSALSVLD- 76 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEE---ETT--------EEEEECSCSHHHHHHHH-
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEE---ecC--------cEEEEEcChHHHHHHHh-
Confidence 45789999999988743 332 568899999 998876652 111 19999999999999998
Q ss_pred hCCcccCCceEEEEecc
Q 033648 90 VNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 90 l~g~~~~g~~l~v~~a~ 106 (114)
|||..++||.|+|++..
T Consensus 77 ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 77 VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp GGGSEETTEEEEEECCC
T ss_pred cCCeeeCCeEEEEeccC
Confidence 99999999999999754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.6e-07 Score=52.41 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhc-----CCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccC
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLF-----GSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 96 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~-----G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 96 (114)
+...++-+.|||..++...++.+..+ + |.+..+. ..+ .-+-|+|+|.+...|-+|.-+|+|.+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~-----L~p----DH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKIL-----LVS----DFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEE-----EET----TTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEE-----Eec----CCCceEEEEccchhhHHHHhhcCCeeec
Confidence 44678999999999999999999999 9 7665432 222 3467999999999999999999999999
Q ss_pred CceEEEEe
Q 033648 97 GKPMIIQF 104 (114)
Q Consensus 97 g~~l~v~~ 104 (114)
|+.|++.-
T Consensus 89 gr~Lr~gT 96 (117)
T 2l9w_A 89 GKVIRSGT 96 (117)
T ss_dssp TEEEEEEC
T ss_pred CeEEEecC
Confidence 99999863
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.00 E-value=7.8e-05 Score=41.84 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=58.4
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccC--CCceeEEEEEeCCHHHHHHHHHHhCCcccCCc----
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAHRALNLVNGYVFKGK---- 98 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~---- 98 (114)
+.|-|++||+..+++++.+.+++ ...++... .+..+.+ ....+.|+|.|.+.+++..-...++|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~---fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFE---FFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEE---EEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEE---EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 46889999999999999999988 77654322 1222222 12348899999999999999999999886432
Q ss_pred -eEEEEeccCC
Q 033648 99 -PMIIQFGRNP 108 (114)
Q Consensus 99 -~l~v~~a~~~ 108 (114)
+-.|++|--+
T Consensus 78 ~~a~VE~AP~q 88 (91)
T 1uw4_A 78 YPAIVEFAPFQ 88 (91)
T ss_dssp EECEEEECSSC
T ss_pred eeeEEEEcCCC
Confidence 3467777543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=3.7e-05 Score=44.07 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=57.3
Q ss_pred CCeEEecCCCCCC-CH----hHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 24 ASVLYIKNLAKDV-VP----DDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 24 ~~~l~v~nlp~~~-~~----~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
.++|+|.|++..+ .. +.++.+|.. |+.+.... .. ++-.-.-|.|.+.++|.+|-..||+..++|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~----~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQ----YF-----KSFKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEE----EE-----TTTTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCccee----ec-----CcceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 4679999998754 32 456888888 88765321 11 1223457899999999999999999999999
Q ss_pred eEEEEeccCC
Q 033648 99 PMIIQFGRNP 108 (114)
Q Consensus 99 ~l~v~~a~~~ 108 (114)
.++|-|+.+.
T Consensus 75 ~~r~YFgq~~ 84 (104)
T 1wey_A 75 EMKLYFAQTL 84 (104)
T ss_dssp ECEEECCCCS
T ss_pred eeEEEecCCC
Confidence 9999999754
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.0013 Score=37.58 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=53.7
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhh----cCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCc
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSL----FGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 98 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~----~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 98 (114)
-..+|.|.|||+.+.++.|.-.|++. -|.+..++ . ..+-|+|+|.+...|++.++. ..+.+++-
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~------~-----~~~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQ------R-----LGCGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEE------E-----ETTEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEE------E-----cCCcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 45789999999999999999999872 23444332 1 116789999999999998852 35678888
Q ss_pred eEEEEecc
Q 033648 99 PMIIQFGR 106 (114)
Q Consensus 99 ~l~v~~a~ 106 (114)
+|.|.-.-
T Consensus 75 ~LsV~P~~ 82 (104)
T 2dhx_A 75 QLSLRPAP 82 (104)
T ss_dssp BCEEEECC
T ss_pred EEEEEcCC
Confidence 88886544
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.49 E-value=0.00071 Score=38.27 Aligned_cols=54 Identities=26% Similarity=0.460 Sum_probs=42.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
..+++ ++|+.+...+|..+|++ ||.+. ++ |+- -..|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~-fggv~-I~---Wid-------DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSA-FGNIQ-IS---WID-------DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTT-TCSCC-CE---EEE-------TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhc-cCCEE-EE---EEc-------CCeEEEEecCHHHHHHHHHhcc
Confidence 44555 99999999999999999 98542 22 322 3469999999999999998663
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.29 E-value=0.0009 Score=37.85 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=55.1
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccC--CCceeEEEEEeCCHHHHHHHHHHhCCcccCCc---
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQE--GRMRGQAFVTFPSVELAHRALNLVNGYVFKGK--- 98 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~--- 98 (114)
+-.|-|++||+..|++++.+.+++ .-.++... -+....+ ....+.|||.|.+.++...-...++|..+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~-~~~~d~~~---fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRP-LPAHDYFE---FFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSC-CSSEEECC---CCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCC-cCccceEE---EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 456889999999999998887776 44433221 0111111 12347899999999999999999999886432
Q ss_pred --eEEEEecc
Q 033648 99 --PMIIQFGR 106 (114)
Q Consensus 99 --~l~v~~a~ 106 (114)
+-.|++|.
T Consensus 85 ~~~a~VE~AP 94 (97)
T 2l08_A 85 EYPAVVEFAP 94 (97)
T ss_dssp EEEEEEEECC
T ss_pred EeeeEEEecC
Confidence 45677765
No 215
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.10 E-value=0.00027 Score=42.70 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHh-CCcccCCceEEEEeccC
Q 033648 66 EGRMRGQAFVTFPSVELAHRALNLV-NGYVFKGKPMIIQFGRN 107 (114)
Q Consensus 66 ~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~~ 107 (114)
....+|+++++|.+.++|++|+..+ ||..++| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3467899999999999999999999 9999999 999998875
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.00085 Score=38.05 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=42.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
..+++ ++|+.+...+|..+|++ ||.+. ++ |+ .-..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fggv~-I~---Wi-------dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FGNIQ-IS---WI-------DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SEEEE-EE---EE-------ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cCCEE-EE---EE-------cCCeEEEEecCHHHHHHHHHhcc
Confidence 34666 99999999999999999 98442 22 22 23469999999999999998764
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.0096 Score=34.87 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=52.5
Q ss_pred CCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCC-ceEEE
Q 033648 24 ASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG-KPMII 102 (114)
Q Consensus 24 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g-~~l~v 102 (114)
.+.|.|-+.|+.. .+.+...|.+ ||.|.+.. . .....+-.|.|.+..+|++|+ ..||..++| -.|-|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~------~---~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHV------M---SNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGV 91 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEE------E---CSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHh-hCcEEEec------c---CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEE
Confidence 5678899999874 5677788999 99986432 1 123478999999999999999 569999985 44555
Q ss_pred Eec
Q 033648 103 QFG 105 (114)
Q Consensus 103 ~~a 105 (114)
...
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.59 E-value=0.0083 Score=35.71 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=53.0
Q ss_pred CCCeEEecCCCCCCCHhHHHHHHhhhcCCceec-cccee-----EE----eccCC-CceeEEEEEeCCHHHHHHHHHHhC
Q 033648 23 PASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAA-KSGLI-----VK----LMQEG-RMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 23 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~-~~~~~-----~~----~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
..+.+.|-+.|+. ....+...|++ ||.|.+- ..... .. ....+ ....|..|.|.+..+|.+|+ ..|
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~N 82 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LEN 82 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhC
Confidence 3456778888765 44566777999 9998641 11000 00 00001 12468899999999999999 679
Q ss_pred CcccCCceEEEEecc
Q 033648 92 GYVFKGKPMIIQFGR 106 (114)
Q Consensus 92 g~~~~g~~l~v~~a~ 106 (114)
|..++|.-|-|....
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999877776654
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.57 E-value=0.0031 Score=38.19 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=24.3
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 68 RMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 68 ~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
.++||+||+|.+.++|++|+..+++..
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 589999999999999999999988644
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.14 E-value=0.008 Score=43.03 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=37.8
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHH
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRAL 87 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 87 (114)
+.|+|. .|..+++.+|.+.|+. ||.|..+ +++... ..|+.|+|.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~-----~~~~~~---g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQ-FGPINNH-----FFYESF---GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGG-GSCCCCE-----EEECSS---SEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHh-cCCcceE-----EEEccC---CeEEEEEeCCHHHHHHHH
Confidence 589997 7999999999999999 9999764 334332 379999999999888665
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.13 E-value=2 Score=31.12 Aligned_cols=55 Identities=25% Similarity=0.371 Sum_probs=42.9
Q ss_pred CeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 92 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 92 (114)
..++|+ +|..+...+|...|+. ||.+. +. | -....|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~-fg~v~-V~---w-------iddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSA-FGNIQ-IS---W-------IDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGG-GCCCE-EE---E-------CSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHh-cCCEE-EE---E-------EcCCeEEEEECCHHHHHHHHHHHHh
Confidence 456666 8888899999999999 99652 21 1 2345699999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.60 E-value=2.4 Score=22.04 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=37.0
Q ss_pred CCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhCCcccCCceEEEEecc
Q 033648 35 DVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 106 (114)
Q Consensus 35 ~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 106 (114)
.+...++..++.. -+.+..-.+. .+.. ...|.||+.... .+..++..|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~-~~gi~~~~IG-~I~i-----~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAK-IDGVSADDIG-IITI-----MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHT-STTCCGGGEE-EEEE-----CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHH-ccCCChhhcc-EEEE-----eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4555667777766 4445433221 1111 234778877654 5777889999999999999998764
No 223
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=52.25 E-value=29 Score=19.40 Aligned_cols=52 Identities=8% Similarity=-0.024 Sum_probs=29.2
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHRA 86 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a 86 (114)
...+..++++-+.+.|+.-..+-+.+.+.... .|++.|||. .|.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~-IYds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAK-LYEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHhh
Confidence 56788999988887566533222111222211 344556665 47777776543
No 224
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=47.11 E-value=38 Score=19.18 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=28.8
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..++++-+++-|+.-..+-+.+.+.... .|++.|||. .|.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAK-YYYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEE-EESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHh
Confidence 46778899888887566532222111111111 345567775 4888777764
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.19 E-value=40 Score=18.60 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCCCeEEecCCCCCCCHhHHHHHHhhhcCCceecccceeEEeccCCCceeEEEEEeCCHHHHHHHHHHhC
Q 033648 22 NPASVLYIKNLAKDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 91 (114)
Q Consensus 22 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 91 (114)
...|.+.|-|+|..+...++--.... .|-.-.|. ..-|.|.+.|.+.++...|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrh-lgyefycd-----------yidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRH-LGYEFYCD-----------YIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHT-TCCCEEEE-----------ECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehh-cCeeEeee-----------eecCeeEEEecCChHHHHHHHHHH
Confidence 45688999999999999888776666 66543332 134678999999999998987664
No 226
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=39.61 E-value=35 Score=18.98 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=25.2
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc----CCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ----EGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..++++-+.+.|+.-..+- .+..-. .|++.|||.| |.+.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~v---vv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELV---IVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTE---ECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEE---EEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45678888888877455422221 111112 2445566653 666555543
No 227
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=36.30 E-value=71 Score=19.24 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=28.3
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc----CCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ----EGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..++++-+++.|+.-..+- .+..-. .|.+.|||.| |.+.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~V---vV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNV---VVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGE---EEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEE---EEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46678899888887566432221 222222 2445567764 788877764
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.54 E-value=27 Score=18.91 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=22.1
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 68 RMRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 68 ~~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
..+||.||++...++...++....|..
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred ccCCEEEEEEecchhHHHHHHCCCCce
Confidence 378999999999988888887776643
No 229
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=32.33 E-value=69 Score=17.91 Aligned_cols=51 Identities=6% Similarity=-0.064 Sum_probs=29.3
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..++++-+.+.|+.-..+-+.+.+.... .|++.|||. .|.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAK-IYNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEE-EECCHHHHHh
Confidence 56788899988887566533322111222221 345567775 4777777654
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.76 E-value=31 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.5
Q ss_pred CeEEecCCCCCCCHhHHHHHHhh
Q 033648 25 SVLYIKNLAKDVVPDDFFFVFGS 47 (114)
Q Consensus 25 ~~l~v~nlp~~~~~~~l~~~f~~ 47 (114)
....|+|+|+.++..-|..++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~ 137 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSF 137 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGG
T ss_pred ceEEEEccCccccHHHHHHHHhc
Confidence 45789999999999998888865
No 231
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.27 E-value=66 Score=18.94 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhCCcc
Q 033648 69 MRGQAFVTFPSVELAHRALNLVNGYV 94 (114)
Q Consensus 69 ~~g~~fv~f~~~~~a~~a~~~l~g~~ 94 (114)
.+||.||++...++...++....|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 78999999999888888887777643
No 232
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.96 E-value=1.4e+02 Score=17.61 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCHhHHHHHHhhhcCCceecccceeEEecc-CCCceeEEEEEeCCHHHHHH
Q 033648 34 KDVVPDDFFFVFGSLFGSIDAAKSGLIVKLMQ-EGRMRGQAFVTFPSVELAHR 85 (114)
Q Consensus 34 ~~~~~~~l~~~f~~~~G~i~~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~ 85 (114)
...+..++++-+.+-|+.-..+-+.+-+.... .|.+.|||. .|.+.+.+..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~-IYds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGL-VYNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEE-EESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEE-EeCCHHHHHh
Confidence 46788999999887566433332212222222 344556665 4788777764
Done!