BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033649
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZME|C Chain C, Integrated Structural And Functional Model Of The Human
           Escrt-Ii Complex
 pdb|2ZME|D Chain D, Integrated Structural And Functional Model Of The Human
           Escrt-Ii Complex
          Length = 102

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 68  FNDPELQRKKRVASYKVYTVEGKMKGSLRKSLKWVKNTYTQIVHGWQ 114
           FN+ +LQRK  V S ++   E + KG    +L+W+  + +  +  W+
Sbjct: 60  FNNVKLQRKLPVESIQIVLEELRKKG----NLEWLDKSKSSFLIMWR 102


>pdb|3CUQ|C Chain C, Integrated Structural And Functional Model Of The Human
           Escrt-Ii Complex
 pdb|3CUQ|D Chain D, Integrated Structural And Functional Model Of The Human
           Escrt-Ii Complex
          Length = 176

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 68  FNDPELQRKKRVASYKVYTVEGKMKGSLRKSLKWVKNTYTQIVHGWQ 114
           FN+ +LQRK  V S ++   E + KG    +L+W+  + +  +  W+
Sbjct: 60  FNNVKLQRKLPVESIQIVLEELRKKG----NLEWLDKSKSSFLIMWR 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,926,650
Number of Sequences: 62578
Number of extensions: 75976
Number of successful extensions: 83
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)