BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033649
         (114 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
          Length = 1559

 Score = 32.7 bits (73), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 52  SKKSKSTFGSVSKSWSFNDPELQRKKRVASYKVYTVEGKMKGSLRKSLKWVKNTYTQIVH 111
           + KS S FG   +S+S  +P ++  + +    ++   GK+KG   K + W+ N Y Q ++
Sbjct: 486 ADKSGSGFG---ESYSLANPSIRAGEDIPQPTIFN--GKLKGYQLKGMNWLANLYEQGIN 540

Query: 112 G 112
           G
Sbjct: 541 G 541


>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
          Length = 1556

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 52  SKKSKSTFGSVSKSWSFNDPELQRKKRVASYKVYTVEGKMKGSLRKSLKWVKNTYTQIVH 111
           + KS + FG   +S+S  +P ++  + +    ++   GK+KG   K + W+ N Y Q ++
Sbjct: 484 ANKSGTGFG---ESYSLANPSIRAGEDIPQPTIFN--GKLKGYQLKGMNWLANLYEQGIN 538

Query: 112 G 112
           G
Sbjct: 539 G 539


>sp|P56696|KCNQ4_HUMAN Potassium voltage-gated channel subfamily KQT member 4 OS=Homo
           sapiens GN=KCNQ4 PE=1 SV=2
          Length = 695

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 7/33 (21%)

Query: 38  PTQPNDQQLGKKSKSKKSKSTFGSVSKSWSFND 70
           PT P+ +Q+G+ +   K       V KSWSFND
Sbjct: 462 PTSPSSEQVGEATSPTK-------VQKSWSFND 487


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.123    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,303,784
Number of Sequences: 539616
Number of extensions: 1427538
Number of successful extensions: 2915
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2908
Number of HSP's gapped (non-prelim): 29
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)