Query 033649
Match_columns 114
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 04:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12023 DUF3511: Domain of un 100.0 9E-33 2E-37 176.9 2.0 47 66-112 1-47 (47)
2 PF10856 DUF2678: Protein of u 24.2 44 0.00096 25.2 1.3 10 1-10 1-10 (118)
3 PF07849 DUF1641: Protein of u 23.5 39 0.00084 20.5 0.7 9 68-76 20-28 (42)
4 PF08255 Leader_Trp: Trp-opero 18.1 37 0.00079 17.3 -0.2 6 109-114 6-11 (14)
5 cd07402 MPP_GpdQ Enterobacter 14.9 82 0.0018 23.0 0.9 32 59-90 207-239 (240)
6 PF01372 Melittin: Melittin; 13.7 78 0.0017 18.4 0.4 9 98-106 16-24 (26)
7 PF02009 Rifin_STEVOR: Rifin/s 13.2 90 0.002 26.2 0.8 7 69-75 33-39 (299)
8 PF15178 TOM_sub5: Mitochondri 13.0 1.1E+02 0.0023 20.3 0.9 10 69-78 11-21 (51)
9 PF15271 BBP1_N: Spindle pole 11.5 2.3E+02 0.005 22.1 2.5 22 55-76 45-66 (145)
10 PF13243 Prenyltrans_1: Prenyl 11.3 86 0.0019 20.3 0.1 19 88-106 41-59 (109)
No 1
>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=99.97 E-value=9e-33 Score=176.91 Aligned_cols=47 Identities=72% Similarity=1.275 Sum_probs=46.5
Q ss_pred cccCChHHHhhhhhheeeeeeeeccchhhhhccchhhhhhhheeccc
Q 033649 66 WSFNDPELQRKKRVASYKVYTVEGKMKGSLRKSLKWVKNTYTQIVHG 112 (114)
Q Consensus 66 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~r~sfrWiK~k~s~iv~G 112 (114)
|+|+|||||||||||+||+|+||||||+|||+||||||++|++||||
T Consensus 1 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~R~sfrWiK~k~s~iv~G 47 (47)
T PF12023_consen 1 WGFNDPEMKRKKRVASYKVYAVEGKVKGSLRKSFRWIKNKCSRIVYG 47 (47)
T ss_pred CCCCCHHHHHHHHHHhhheeeeehHHHHHHHhhhHHHHHHhhHhhcC
Confidence 89999999999999999999999999999999999999999999998
No 2
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=24.17 E-value=44 Score=25.22 Aligned_cols=10 Identities=10% Similarity=0.607 Sum_probs=9.3
Q ss_pred CCcccCcccc
Q 033649 1 MENYRSKSCK 10 (114)
Q Consensus 1 MEd~RSkS~~ 10 (114)
||||+.+.|+
T Consensus 1 ~~~~~~~~~g 10 (118)
T PF10856_consen 1 MDDFTTRTYG 10 (118)
T ss_pred CCcccccccC
Confidence 8999999998
No 3
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=23.50 E-value=39 Score=20.49 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=7.6
Q ss_pred cCChHHHhh
Q 033649 68 FNDPELQRK 76 (114)
Q Consensus 68 ~~dpE~kRk 76 (114)
+.|||+||=
T Consensus 20 l~Dpdvqrg 28 (42)
T PF07849_consen 20 LRDPDVQRG 28 (42)
T ss_pred HcCHHHHHH
Confidence 599999984
No 4
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=18.07 E-value=37 Score=17.30 Aligned_cols=6 Identities=50% Similarity=1.337 Sum_probs=4.4
Q ss_pred eccccC
Q 033649 109 IVHGWQ 114 (114)
Q Consensus 109 iv~G~~ 114 (114)
+.+|||
T Consensus 6 ~L~~WW 11 (14)
T PF08255_consen 6 SLHGWW 11 (14)
T ss_pred EEeeEE
Confidence 467887
No 5
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=14.88 E-value=82 Score=23.04 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=25.0
Q ss_pred cCCcccccccCChHHHhhhhhheeeeeee-ecc
Q 033649 59 FGSVSKSWSFNDPELQRKKRVASYKVYTV-EGK 90 (114)
Q Consensus 59 ~~~ss~sw~~~dpE~kRkkRVA~Yk~y~v-EGK 90 (114)
.++.+-.|...+|+..|--+.++|+.|.+ |++
T Consensus 207 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 207 APSTCHQFAPDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred cCcceeeecCCCCcccccccCCCCcEEEEecCC
Confidence 34445566668899999999999999998 654
No 6
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=13.70 E-value=78 Score=18.41 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=6.9
Q ss_pred cchhhhhhh
Q 033649 98 SLKWVKNTY 106 (114)
Q Consensus 98 sfrWiK~k~ 106 (114)
-+.|||+|-
T Consensus 16 lISWIK~kr 24 (26)
T PF01372_consen 16 LISWIKNKR 24 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 467999874
No 7
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=13.19 E-value=90 Score=26.21 Aligned_cols=7 Identities=57% Similarity=1.132 Sum_probs=6.2
Q ss_pred CChHHHh
Q 033649 69 NDPELQR 75 (114)
Q Consensus 69 ~dpE~kR 75 (114)
||||||+
T Consensus 33 NDPeMK~ 39 (299)
T PF02009_consen 33 NDPEMKS 39 (299)
T ss_pred CcHHHHH
Confidence 8999986
No 8
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=13.05 E-value=1.1e+02 Score=20.30 Aligned_cols=10 Identities=60% Similarity=0.973 Sum_probs=6.8
Q ss_pred CCh-HHHhhhh
Q 033649 69 NDP-ELQRKKR 78 (114)
Q Consensus 69 ~dp-E~kRkkR 78 (114)
-|| |||||-|
T Consensus 11 ~DPeE~k~kmR 21 (51)
T PF15178_consen 11 MDPEEMKRKMR 21 (51)
T ss_pred CCHHHHHHHHH
Confidence 466 7888755
No 9
>PF15271 BBP1_N: Spindle pole body component BBP1, Mps2-binding protein
Probab=11.50 E-value=2.3e+02 Score=22.07 Aligned_cols=22 Identities=41% Similarity=0.389 Sum_probs=16.6
Q ss_pred CccccCCcccccccCChHHHhh
Q 033649 55 SKSTFGSVSKSWSFNDPELQRK 76 (114)
Q Consensus 55 gKS~~~~ss~sw~~~dpE~kRk 76 (114)
+.....+.|.||+..||++-+|
T Consensus 45 ~~~~~rsRSnSwsg~D~~Fy~k 66 (145)
T PF15271_consen 45 SSERSRSRSNSWSGLDSSFYRK 66 (145)
T ss_pred cccccccCCCCCCCCChhHHHH
Confidence 4455557778998889998876
No 10
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=11.32 E-value=86 Score=20.30 Aligned_cols=19 Identities=11% Similarity=0.546 Sum_probs=14.3
Q ss_pred eccchhhhhccchhhhhhh
Q 033649 88 EGKMKGSLRKSLKWVKNTY 106 (114)
Q Consensus 88 EGKvK~S~r~sfrWiK~k~ 106 (114)
++.+...|++++.||.+.-
T Consensus 41 ~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 41 DAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp TS-SSBSSHHHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 4589999999999999853
Done!